Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 250 of 362
Found at i:84385242 original size:38 final size:39
Alignment explanation
Indices: 84385174--84385350 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 39
84385164 CCAGCATGAT
*
84385174 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGC-CGGATATATCACTAGCACGAA
* *
84385214 TGCTCTTC-GGACTTAGCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCGGATATATCACTAGCACGAA
* * * *
84385252 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAG-CCGGATATA-TCACTAGCACGAA
*
84385293 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAG-CCGGATAT-ATCAC-TAGCACGAA
*
84385333 AGC-CTTCGGGACTTAGCC
1 TGCTCTTCGGGACTTAGCC
84385351 CGGACATCAT
Statistics
Matches: 115, Mismatches: 15, Indels: 15
0.79 0.10 0.10
Matches are distributed among these distances:
38 27 0.23
39 21 0.18
40 47 0.41
41 20 0.17
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
TGCTCTTCGGGACTTAGCCGGATATATCACTAGCACGAA
Found at i:84385260 original size:78 final size:80
Alignment explanation
Indices: 84385161--84385316 Score: 210
Period size: 78 Copynumber: 2.0 Consensus size: 80
84385151 CGAATACACG
* * * *
84385161 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATA-TCACTAGCACGAATGCTCTTCGGA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATAGTAACTAGCACCAATGC-CTTCGGA
84385225 -CTTAG-CCGGATACA
65 TCTTAGTCCGGATACA
* * * *
84385239 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGAT
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATAGTAACTAGCACCAATGCCTTCGGAT
84385304 CTTAGTCCGGATA
66 CTTAGTCCGGATA
84385317 TGGTCACTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 42 0.63
79 18 0.27
80 7 0.10
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (80 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATAGTAACTAGCACCAATGCCTTCGGAT
CTTAGTCCGGATACA
Found at i:84385345 original size:80 final size:78
Alignment explanation
Indices: 84385175--84385354 Score: 204
Period size: 78 Copynumber: 2.3 Consensus size: 78
84385165 CAGCATGATT
* * * *
84385175 GCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCCGGATACAT
1 GCTCTTCGGGACTTAGCCCGGATATATAACTAGCACCAATGCTCTTCGGACTTAGCCGGATACAT
* *
84385240 CACTAGCATGAAT
66 CACTAGCATCAAA
* *
84385253 GCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATA
1 GCTCTTCGGGACTTAGCCCGGATATA-TAACTAGCACCAATGCTCTTCGGA-CTTAG-CCGGATA
**
84385317 TGGTCACTTAGCA-CAAA
63 -CATCAC-TAGCATCAAA
84385334 GC-CTTCGGGACTTAGCCCGGA
1 GCTCTTCGGGACTTAGCCCGGA
84385355 CATCATTCGA
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 30 0.34
79 18 0.21
80 26 0.30
81 8 0.09
82 5 0.06
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (78 bp):
GCTCTTCGGGACTTAGCCCGGATATATAACTAGCACCAATGCTCTTCGGACTTAGCCGGATACAT
CACTAGCATCAAA
Found at i:84385696 original size:29 final size:29
Alignment explanation
Indices: 84385657--84385735 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
84385647 CTTAATAATC
*
84385657 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
84385687 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
84385716 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
84385736 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:84385778 original size:43 final size:43
Alignment explanation
Indices: 84385717--84385819 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
84385707 TGCATTTCAA
84385717 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
84385760 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
84385803 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
84385820 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:84387714 original size:37 final size:37
Alignment explanation
Indices: 84387664--84387742 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
84387654 TTATTACGAA
* *
84387664 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
84387701 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
84387738 GTCTT
1 GTCTT
84387743 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:84388104 original size:22 final size:22
Alignment explanation
Indices: 84388076--84388148 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
84388066 TTTCACATTC
84388076 ATCACATCGGCTATTAGGCCTT
1 ATCACATCGGCTATTAGGCCTT
*** *** *
84388098 ATCACATATAC-ACTTTCACATT
1 ATCACATCGGCTA-TTAGGCCTT
84388120 CATCACATCGGCTATTAGGCCTT
1 -ATCACATCGGCTATTAGGCCTT
84388143 ATCACA
1 ATCACA
84388149 CATATACACT
Statistics
Matches: 34, Mismatches: 14, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
21 1 0.03
22 19 0.56
23 13 0.38
24 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATCGGCTATTAGGCCTT
Found at i:84388155 original size:92 final size:92
Alignment explanation
Indices: 84387860--84388253 Score: 599
Period size: 92 Copynumber: 4.2 Consensus size: 92
84387850 CCCTTCGGGA
* * * * * * * * * *
84387860 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATACAC
*
84387925 TTTCACATTCATCACATCGGCCACTAGGC
64 TTTCACATTCATCACATCGGCCATTAGGC
* * *
84387954 CTTATCACATATATGCACTTTCACATTCATTACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATACAC
*
84388019 TTTCACATTCATCACATCGGCTATTAGGC
64 TTTCACATTCATCACATCGGCCATTAGGC
84388048 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTT
*
84388113 TCACATTCATCACATCGGCTATTAGGC
66 TCACATTCATCACATCGGCCATTAGGC
*
84388140 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTT
84388205 TCACATTCATCACATCGGCCATTAGGC
66 TCACATTCATCACATCGGCCATTAGGC
84388232 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
84388254 TGAATCTACA
Statistics
Matches: 283, Mismatches: 17, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
92 148 0.52
94 135 0.48
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (92 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTT
TCACATTCATCACATCGGCCATTAGGC
Found at i:84388265 original size:45 final size:47
Alignment explanation
Indices: 84387860--84388253 Score: 607
Period size: 47 Copynumber: 8.5 Consensus size: 47
84387850 CCCTTCGGGA
* * * * * * * *
84387860 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * *
84387907 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
84387954 CTTATCACATATATGCACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
84388001 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
84388048 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
84388095 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
84388140 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
84388187 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
84388232 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
84388254 TGAATCTACA
Statistics
Matches: 326, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
45 89 0.27
47 237 0.73
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:84395460 original size:43 final size:43
Alignment explanation
Indices: 84395311--84395469 Score: 182
Period size: 43 Copynumber: 3.7 Consensus size: 43
84395301 TATGTGTTAT
*
84395311 CATGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * * ** *
84395355 CGTGTAAGACCATGTCTTGGAAATTGGCATCG-TATTTGATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
84395397 CATGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
*
84395440 CATGTAAGACCACGTTTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
84395470 TGTACGAGGT
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
42 29 0.31
43 38 0.40
44 28 0.29
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:84409389 original size:55 final size:55
Alignment explanation
Indices: 84409302--84409550 Score: 268
Period size: 55 Copynumber: 4.7 Consensus size: 55
84409292 ATTAGGGTTT
*
84409302 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCATAAGGC
* * * *
84409357 AAGGGTATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-ATAAGGC
* * * *
84409412 AAAGG-TCCCTTGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCATAAGGC
* * *
84409465 AAGGATACCATGTAAGACAATGTCGAGACATGGCAA-TGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCATAAGGC
* *
84409514 AAGGATACCATGTAAGACCATGACAAGTCATGGCAAT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAAT
84409551 GGAAATGTAC
Statistics
Matches: 164, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
49 32 0.20
52 6 0.04
53 41 0.25
54 14 0.09
55 67 0.41
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCATAAGGC
Found at i:84409508 original size:108 final size:110
Alignment explanation
Indices: 84409312--84409511 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
84409302 AAGGATACCA
* * *
84409312 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGGTATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACAA
*
84409377 TGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTCCCT
66 TGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTCCCT
*
84409422 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGACA
* *
84409484 ATGTCGAGACATGGCAATGGTAAGTTTC
65 ATGTCAAGACATGGCAATGATAAGTTTC
84409512 AAAAGGATAC
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 24 0.29
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACAA
TGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTCCCT
Found at i:84409771 original size:16 final size:16
Alignment explanation
Indices: 84409750--84409780 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84409740 ATAAATTTGA
84409750 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
84409766 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
84409781 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:84419907 original size:39 final size:39
Alignment explanation
Indices: 84419851--84419997 Score: 159
Period size: 39 Copynumber: 3.8 Consensus size: 39
84419841 TTAATATGGG
*
84419851 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
1 TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * * * * *
84419890 TAAATTACTATATTGAATAATTAATAGCTATTAAATAAC
1 TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * * * *
84419929 TATACTACTGCACTGAATATTTGATAGTTACTGAATGAC
1 TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * *
84419968 TAAATTGCTGTACTGAATAACTGATTGTTA
1 TAAATTACTGTACTGAATAATTGATAGTTA
84419998 TTGATTGGTT
Statistics
Matches: 83, Mismatches: 25, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (39 bp):
TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
Found at i:84421269 original size:18 final size:18
Alignment explanation
Indices: 84421246--84421283 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
84421236 CCTATTCCTA
84421246 TACCCAACGAGCCCCGAT
1 TACCCAACGAGCCCCGAT
84421264 TACCCAACGAGCCCCGAT
1 TACCCAACGAGCCCCGAT
84421282 TA
1 TA
84421284 AAGAGTTACG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.42, G:0.16, T:0.13
Consensus pattern (18 bp):
TACCCAACGAGCCCCGAT
Found at i:84422075 original size:34 final size:34
Alignment explanation
Indices: 84422032--84422099 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
84422022 TAGGGAGAGT
84422032 GGTGGAAATTAACTGGAGGATGTTTCCATTGTGG
1 GGTGGAAATTAACTGGAGGATGTTTCCATTGTGG
84422066 GGTGGAAATTAACTGGAGGATGTTTCCATTGTGG
1 GGTGGAAATTAACTGGAGGATGTTTCCATTGTGG
84422100 ATCCACCAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.09, G:0.35, T:0.32
Consensus pattern (34 bp):
GGTGGAAATTAACTGGAGGATGTTTCCATTGTGG
Found at i:84426014 original size:3 final size:3
Alignment explanation
Indices: 84426002--84426058 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
84425992 TTAGCATATC
* *
84426002 TTA TTA -TA TTA TTG TTA TTA -AA TTGAA TTA -TA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT--A TTA TTA TTA TTA TTA TTA
84426046 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
84426059 GAATTAAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
2 5 0.11
3 37 0.82
5 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:84427579 original size:44 final size:44
Alignment explanation
Indices: 84427510--84427598 Score: 103
Period size: 44 Copynumber: 2.0 Consensus size: 44
84427500 CTTCGACCTT
84427510 GAGTCGATGAGGCACTATAAGTGTCGTACTATTACT-TTGACTTC
1 GAGTCGATGAGGCACTATAAGTGTCGTACTATTACTGTT-ACTTC
* * *
84427554 GAGTCGATGAGGCATCT-T-GGCTGTCGTATTGTTACTGTTACTTC
1 GAGTCGATGAGGCA-CTATAAG-TGTCGTACTATTACTGTTACTTC
84427598 G
1 G
84427599 GTTTAATTCG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
43 1 0.03
44 34 0.87
45 4 0.10
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (44 bp):
GAGTCGATGAGGCACTATAAGTGTCGTACTATTACTGTTACTTC
Found at i:84430855 original size:21 final size:20
Alignment explanation
Indices: 84430829--84430885 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 20
84430819 AGATAGTTAC
84430829 TGAATAACTAAATTACTGTAT
1 TGAATAACTAAA-TACTGTAT
** *
84430850 TGAATAA-TTGATAGT-TAT
1 TGAATAACTAAATACTGTAT
84430868 TGAATAACTAAACTACTG
1 TGAATAACTAAA-TACTG
84430886 CACTGAATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
18 10 0.37
19 5 0.19
20 5 0.19
21 7 0.26
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (20 bp):
TGAATAACTAAATACTGTAT
Found at i:84430874 original size:39 final size:39
Alignment explanation
Indices: 84430820--84430932 Score: 158
Period size: 39 Copynumber: 2.9 Consensus size: 39
84430810 GGCTGTTACA
*
84430820 GATAGTTACTGAATAACTAAATTACTGTATTGAATAATT
1 GATAGTTACTGAATAACTAAATTACTGTACTGAATAATT
* * * *
84430859 GATAGTTATTGAATAACTAAACTACTGCACTGAATATTT
1 GATAGTTACTGAATAACTAAATTACTGTACTGAATAATT
*
84430898 GATAGTTACTGAATGACTAAATTA--GTACTGAATAA
1 GATAGTTACTGAATAACTAAATTACTGTACTGAATAA
84430933 CTAATTGTTA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
37 9 0.14
39 55 0.86
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (39 bp):
GATAGTTACTGAATAACTAAATTACTGTACTGAATAATT
Found at i:84439330 original size:39 final size:39
Alignment explanation
Indices: 84439224--84439332 Score: 191
Period size: 39 Copynumber: 2.8 Consensus size: 39
84439214 TAATCTAAGA
* * *
84439224 AACATACTCATAGTAGGTTAGTCCAATACGTTGTTCTCT
1 AACATACTCATAGTAGGTCAGTCCAATATGTTGTTCCCT
84439263 AACATACTCATAGTAGGTCAGTCCAATATGTTGTTCCCT
1 AACATACTCATAGTAGGTCAGTCCAATATGTTGTTCCCT
84439302 AACATACTCATAGTAGGTCAGTCCAATATGT
1 AACATACTCATAGTAGGTCAGTCCAATATGT
84439333 GTTGATTTTG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (39 bp):
AACATACTCATAGTAGGTCAGTCCAATATGTTGTTCCCT
Found at i:84442932 original size:41 final size:40
Alignment explanation
Indices: 84442869--84443092 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
84442859 TATTCGGATG
*
84442869 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * * *
84442910 ATATCCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
84442950 ATATCCGGGCTAAGACCTGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
84442991 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
84443031 ATATCCGGGCTAAGTCCCAAAGACATTTGTGCGATTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* *
84443071 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
84443093 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 12 0.08
40 89 0.56
41 59 0.37
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:84443003 original size:81 final size:81
Alignment explanation
Indices: 84442868--84443092 Score: 285
Period size: 81 Copynumber: 2.8 Consensus size: 81
84442858 TTATTCGGAT
*
84442868 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGCTAAGTCCTGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
* *
84442933 CATTTGCGCTAGTGGC
66 CATTTGCGCGAGTGAC
* *
84442949 GATATCCGGGCTAAGACCTGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
* *
84443014 CATTTGTGCGAGTTAC
66 CATTTGCGCGAGTGAC
* * * * * * * *
84443030 TATATCCGGGCTAAGTCCCAAAGACA-TTTGTGCGATTTG-CTATATCC-GGTTAAATCCCGAAG
1 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTA-GTGACTATATCCGGGCTAAGTCCCGAAG
84443092 G
65 G
84443093 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 14 0.11
80 16 0.13
81 97 0.76
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
CATTTGCGCGAGTGAC
Found at i:84449395 original size:40 final size:39
Alignment explanation
Indices: 84449205--84449388 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
84449195 CGAATGATGT
* * * *
84449205 CCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
84449245 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* * *
84449285 CCGGACTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84449323 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
84449364 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
84449389 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 33 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84449410 original size:79 final size:77
Alignment explanation
Indices: 84449238--84449421 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 77
84449228 GTGCTAAGTG
* * *
84449238 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGACTAAGCTCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGACTAAGCCCGAAGG
**
84449303 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * *
84449317 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGACTAAG-CCCGAA
*
84449381 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
84449396 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
84449422 TACGTGATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGACTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:84456766 original size:26 final size:25
Alignment explanation
Indices: 84456715--84456766 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
84456705 AAAAAACCAC
* * *
84456715 AAAAAATAGAGAATAAAGAATAATA
1 AAAAAATAAAGAAGAAAAAATAATA
*
84456740 AAAAAATTAAAGAAGAAAAAATGATA
1 AAAAAA-TAAAGAAGAAAAAATAATA
84456766 A
1 A
84456767 TAATTAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (25 bp):
AAAAAATAAAGAAGAAAAAATAATA
Found at i:84461378 original size:15 final size:17
Alignment explanation
Indices: 84461360--84461397 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
84461350 TAAAAAATAT
84461360 AATTAACA-AAATTT-A
1 AATTAACACAAATTTAA
*
84461375 AATTGACACAAATTTAA
1 AATTAACACAAATTTAA
84461392 AATTAA
1 AATTAA
84461398 AGTCCTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 7 0.37
16 6 0.32
17 6 0.32
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.32
Consensus pattern (17 bp):
AATTAACACAAATTTAA
Found at i:84466332 original size:7 final size:7
Alignment explanation
Indices: 84466320--84466346 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
84466310 TGTTGGAATG
84466320 ATGAAGC
1 ATGAAGC
84466327 ATGAAGC
1 ATGAAGC
84466334 ATGAAGC
1 ATGAAGC
84466341 ATGAAG
1 ATGAAG
84466347 AGAATTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.11, G:0.30, T:0.15
Consensus pattern (7 bp):
ATGAAGC
Found at i:84470676 original size:68 final size:69
Alignment explanation
Indices: 84470527--84470683 Score: 171
Period size: 68 Copynumber: 2.3 Consensus size: 69
84470517 TAGCCAATTC
* *
84470527 ATCTCGTAGCTCTCTTGTCTACATGGTGTCTTTCACTTGGAATCACACATGCGACCTAGCTACAT
1 ATCTCGTAGCTCTCTTGTCTACATGGTGTCTATCACTTGGAATCACACATGCGACCTAGCTACAC
*
84470592 TTAT
66 ATAT
* * *
84470596 CTCTCCCGTAGCTCTCTTGTCTACATGG-GATAC-ATC-C-T-GTATCACACATGTGACCTAGCT
1 ATCT--CGTAGCTCTCTTGTCTACATGGTG-T-CTATCACTTGGAATCACACATGCGACCTAGCT
84470656 ACTACATAGT
62 AC-ACATA-T
84470666 ATCTCGTAGCTCTCTTGT
1 ATCTCGTAGCTCTCTTGT
84470684 ACACATGATG
Statistics
Matches: 75, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
68 36 0.48
69 7 0.09
70 6 0.08
71 25 0.33
72 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (69 bp):
ATCTCGTAGCTCTCTTGTCTACATGGTGTCTATCACTTGGAATCACACATGCGACCTAGCTACAC
ATAT
Found at i:84478154 original size:68 final size:68
Alignment explanation
Indices: 84478005--84478161 Score: 167
Period size: 68 Copynumber: 2.3 Consensus size: 68
84477995 TAGACAATTC
* * * *
84478005 ATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACAT
1 ATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACAC
*
84478070 TTAT
65 ATAT
* * *
84478074 CTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTAC
1 ATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC
84478136 TACATAGT
63 -ACATA-T
84478144 ATCTCGTAGCTCTCTTGT
1 ATCTCGTAGCTCTCTTGT
84478162 ACACATGATG
Statistics
Matches: 74, Mismatches: 9, Indels: 11
0.79 0.10 0.12
Matches are distributed among these distances:
68 36 0.49
69 6 0.08
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
ATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACACA
TAT
Found at i:84480485 original size:18 final size:18
Alignment explanation
Indices: 84480462--84480519 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
84480452 TTTATTCAAT
84480462 TTGGTCCTAAATTTCCAA
1 TTGGTCCTAAATTTCCAA
*
84480480 TTGGTCACCT-TA-TT-CAA
1 TTGGT--CCTAAATTTCCAA
84480497 TTTGGTCCTAAATTTCCAA
1 -TTGGTCCTAAATTTCCAA
84480516 TTGG
1 TTGG
84480520 ACACCTTACT
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
16 3 0.09
17 4 0.12
18 18 0.56
19 4 0.12
20 3 0.09
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (18 bp):
TTGGTCCTAAATTTCCAA
Found at i:84480495 original size:36 final size:36
Alignment explanation
Indices: 84480453--84480527 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
84480443 TTTTTGCGCT
*
84480453 TTATTCAATTTGGTCCTAAATTTCCAATTGGTCACC
1 TTATTCAATTTGGTCCTAAATTTCCAATTGGACACC
84480489 TTATTCAATTTGGTCCTAAATTTCCAATTGGACACC
1 TTATTCAATTTGGTCCTAAATTTCCAATTGGACACC
84480525 TTA
1 TTA
84480528 CTCATAGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.41
Consensus pattern (36 bp):
TTATTCAATTTGGTCCTAAATTTCCAATTGGACACC
Found at i:84483608 original size:25 final size:24
Alignment explanation
Indices: 84483571--84483617 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
84483561 GGACGATATT
* *
84483571 TTATTTTATTTAATATTGATATAA
1 TTATTTTAATTAATATTAATATAA
84483595 TTATATTTAATTAATATTAATAT
1 TTAT-TTTAATTAATATTAATAT
84483618 TACTATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
TTATTTTAATTAATATTAATATAA
Found at i:84483624 original size:25 final size:25
Alignment explanation
Indices: 84483575--84483624 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
84483565 GATATTTTAT
* * *
84483575 TTTATTTAATATTGATATAATTATA
1 TTTAATTAATATTAATATAACTATA
*
84483600 TTTAATTAATATTAATATTACTATA
1 TTTAATTAATATTAATATAACTATA
84483625 AAACTTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (25 bp):
TTTAATTAATATTAATATAACTATA
Found at i:84484258 original size:17 final size:19
Alignment explanation
Indices: 84484231--84484268 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
84484221 TTCAACGTAA
*
84484231 TATTATATATATAATT-TT
1 TATTATATATACAATTATT
84484249 TATT-TATATACAATTATT
1 TATTATATATACAATTATT
84484267 TA
1 TA
84484269 CATAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
TATTATATATACAATTATT
Found at i:84485541 original size:19 final size:20
Alignment explanation
Indices: 84485517--84485556 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
84485507 AATATCAACA
84485517 TATACTATATT-A-TAAAAAT
1 TATACT-TATTCATTAAAAAT
84485536 TATACTTATTCATTAAAAAT
1 TATACTTATTCATTAAAAAT
84485556 T
1 T
84485557 GTTATATCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 7 0.37
20 8 0.42
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (20 bp):
TATACTTATTCATTAAAAAT
Found at i:84492342 original size:25 final size:25
Alignment explanation
Indices: 84492294--84492351 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
84492284 ATAAAACCTA
*
84492294 AAAATGAAATAGTATTAAAGGAAGAT
1 AAAAT-AAAAAGTATTAAAGGAAGAT
84492320 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAAGGAAGAT
84492345 -AAATAAA
1 AAAATAAA
84492352 GATAAAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 7 0.23
25 13 0.43
26 10 0.33
ACGTcount: A:0.64, C:0.02, G:0.14, T:0.21
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAAGGAAGAT
Found at i:84511174 original size:26 final size:26
Alignment explanation
Indices: 84511144--84511225 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
84511134 TGAAATTCCC
84511144 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
84511170 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
84511196 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
84511222 ATCA
1 ATCA
84511226 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:84512328 original size:20 final size:20
Alignment explanation
Indices: 84512290--84512328 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
84512280 TAAATTTTAA
* * *
84512290 ATATAAAATATTTATCAATT
1 ATATAAAATACTCACCAATT
84512310 ATATAAAATACTCACCAAT
1 ATATAAAATACTCACCAAT
84512329 AAACTCTAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (20 bp):
ATATAAAATACTCACCAATT
Found at i:84512376 original size:16 final size:16
Alignment explanation
Indices: 84512355--84512422 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
84512345 TTTGGTTCGC
* *
84512355 TGTATTGGATTAAAGG
1 TGTATTGGAATAGAGG
84512371 TGTATTGGAATAGAGG
1 TGTATTGGAATAGAGG
*
84512387 TGTATTGGATTAGAGG
1 TGTATTGGAATAGAGG
84512403 TGTATTGGAATAGAGG
1 TGTATTGGAATAGAGG
84512419 TGTA
1 TGTA
84512423 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGGAATAGAGG
Found at i:84512391 original size:32 final size:32
Alignment explanation
Indices: 84512355--84512422 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
84512345 TTTGGTTCGC
84512355 TGTATTGGATTAAAGGTGTATTGGAATAGAGG
1 TGTATTGGATTAAAGGTGTATTGGAATAGAGG
*
84512387 TGTATTGGATTAGAGGTGTATTGGAATAGAGG
1 TGTATTGGATTAAAGGTGTATTGGAATAGAGG
84512419 TGTA
1 TGTA
84512423 ATAGCAAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (32 bp):
TGTATTGGATTAAAGGTGTATTGGAATAGAGG
Found at i:84512996 original size:24 final size:27
Alignment explanation
Indices: 84512945--84512997 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
84512935 TATATGTAAT
*
84512945 ATTATTAAAATAATATTTTTTATTTTA
1 ATTATTAAAATAATATTTTTTATATTA
*
84512972 ATTATTTAAA-AATA-TTTTTA-ATTA
1 ATTATTAAAATAATATTTTTTATATTA
84512996 AT
1 AT
84512998 GCAGTGTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 6 0.25
26 4 0.17
27 9 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
ATTATTAAAATAATATTTTTTATATTA
Found at i:84516915 original size:5 final size:5
Alignment explanation
Indices: 84516889--84516929 Score: 50
Period size: 5 Copynumber: 8.6 Consensus size: 5
84516879 TATAAATTAC
* *
84516889 ATAAT AT-AT A-AAA ATAAC ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
84516930 CATAAACACT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
4 5 0.16
5 26 0.84
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (5 bp):
ATAAT
Found at i:84521245 original size:23 final size:21
Alignment explanation
Indices: 84521219--84521262 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
84521209 CTAATTATTT
*
84521219 TAAAAGGTTAATTAGTAATTAAA
1 TAAAAGGTAAATTA--AATTAAA
*
84521242 TAAATGGTAAATTAAATTAAA
1 TAAAAGGTAAATTAAATTAAA
84521263 GGATGGTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
23 12 0.63
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (21 bp):
TAAAAGGTAAATTAAATTAAA
Found at i:84522229 original size:18 final size:18
Alignment explanation
Indices: 84522208--84522258 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
84522198 ACAATTCTTT
84522208 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCTCC
* *
84522226 TCTCTTCATCTATTTCTTC
1 TCTCTTCTTCT-TTTCTCC
84522245 T-TCTTCTTCTTTTC
1 TCTCTTCTTCTTTTC
84522259 CTCTATAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 4 0.14
18 18 0.62
19 7 0.24
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.63
Consensus pattern (18 bp):
TCTCTTCTTCTTTTCTCC
Found at i:84523349 original size:27 final size:27
Alignment explanation
Indices: 84523319--84523376 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
84523309 TACTAAAGTA
84523319 CCCTAAGTATG-AAAATGACCATTATAC
1 CCCTAAG-ATGCAAAATGACCATTATAC
*
84523346 CCCT-AGGTGCAAAATGACCATTATAC
1 CCCTAAGATGCAAAATGACCATTATAC
84523372 CCCTA
1 CCCTA
84523377 GGGTTGATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 2 0.07
26 22 0.79
27 4 0.14
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.24
Consensus pattern (27 bp):
CCCTAAGATGCAAAATGACCATTATAC
Found at i:84523527 original size:28 final size:28
Alignment explanation
Indices: 84523481--84523589 Score: 139
Period size: 28 Copynumber: 3.9 Consensus size: 28
84523471 GGAGGAAGCG
* *
84523481 TTCTGGCGGCTCTGTCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
84523509 TTCTGGTGGCTTTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
84523537 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
84523565 ATCTGGTGACTCTGTCAC-AATATCT
1 TTCTGGTGGCTCTGCCACAAATATCT
84523590 ATTCTGGCAG
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
27 6 0.09
28 64 0.91
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:84530079 original size:13 final size:13
Alignment explanation
Indices: 84530061--84530087 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84530051 TTTCTGACAA
84530061 TTCTTTTCTCTTC
1 TTCTTTTCTCTTC
84530074 TTCTTTTCTCTTC
1 TTCTTTTCTCTTC
84530087 T
1 T
84530088 CTTCATCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (13 bp):
TTCTTTTCTCTTC
Found at i:84530087 original size:18 final size:17
Alignment explanation
Indices: 84530065--84530117 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 17
84530055 TGACAATTCT
84530065 TTTCTCTTCTTCTTTTC
1 TTTCTCTTCTTCTTTTC
*
84530082 TCTTCTCTTCATCTATTT-
1 T-TTCTCTTCTTCT-TTTC
84530100 TTTCTTCTTCTTCTTTTC
1 TTTC-TCTTCTTCTTTTC
84530118 CTCTATAGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 7 0.23
18 20 0.67
19 3 0.10
ACGTcount: A:0.04, C:0.28, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTCTCTTCTTCTTTTC
Found at i:84531364 original size:28 final size:28
Alignment explanation
Indices: 84531318--84531405 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
84531308 GGAGGAAGCG
*
84531318 TTCTGGTGGCTCTGTCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
84531346 TTCTGGTGGC-CTTGCCACAATTATCTGT
1 TTCTGGTGGCTC-TGCCACAAATATCTGT
* *
84531374 ATCTGGTGACTCT-CTCAC-AATATCTG-
1 TTCTGGTGGCTCTGC-CACAAATATCTGT
84531400 TTCTGG
1 TTCTGG
84531406 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
26 5 0.10
27 9 0.18
28 36 0.71
29 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.20, T:0.39
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:84539949 original size:19 final size:19
Alignment explanation
Indices: 84539921--84539961 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
84539911 TCGGGACCAA
* * *
84539921 TTTGATAACTTATAAAAGT
1 TTTGAAAACTTAGAAAAAT
84539940 TTTGAAAACTTAGAAAAAT
1 TTTGAAAACTTAGAAAAAT
84539959 TTT
1 TTT
84539962 CAACTTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (19 bp):
TTTGAAAACTTAGAAAAAT
Found at i:84542109 original size:5 final size:6
Alignment explanation
Indices: 84542091--84542119 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
84542081 AACCCTAATG
84542091 TTCTTT TTCTTT TTCTTT TTCTTT TTCTT
1 TTCTTT TTCTTT TTCTTT TTCTTT TTCTT
84542120 GTATTTTCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTCTTT
Found at i:84547871 original size:6 final size:6
Alignment explanation
Indices: 84547862--84547900 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
84547852 ACATGAACAT
* *
84547862 AAAATA AAAATA AAAATA AAAATA AAACTA AAAAGA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
84547901 CAAATAAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:84550414 original size:272 final size:272
Alignment explanation
Indices: 84549928--84550468 Score: 1010
Period size: 272 Copynumber: 2.0 Consensus size: 272
84549918 TAGTTCTAGC
84549928 AATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACGTCTAAAACAA
1 AATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACGTCTAAAACAA
84549993 CAAAATCAACTAGGAATATGAATTTATCAATTTTTACAAGAACATATTCAATAATACCCCTAGGA
66 CAAAATCAACTAGGAATATGAATTTATCAATTTTTACAAGAACATATTCAATAATACCCCTAGGA
84550058 AATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTAA
131 AATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTAA
* *
84550123 TTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATTAGCTAAATCATTATTCA
196 TTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTATTAA
*
84550188 TAGTTAAACACT
261 TAGTCAAACACT
* * *
84550200 AATTGCTAAAAAGGGTCGACCTAAAATTAAATTTACTTCATTACCCTCATCTATGTCTAAAACAA
1 AATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACGTCTAAAACAA
*
84550265 CAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATTCAATAATACCCCTAGGA
66 CAAAATCAACTAGGAATATGAATTTATCAATTTTTACAAGAACATATTCAATAATACCCCTAGGA
84550330 AATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTAA
131 AATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTAA
*
84550395 TTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTGTTAA
196 TTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTATTAA
84550460 TAGTCAAAC
261 TAGTCAAAC
84550469 TACCAATTAA
Statistics
Matches: 261, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
272 261 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (272 bp):
AATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACGTCTAAAACAA
CAAAATCAACTAGGAATATGAATTTATCAATTTTTACAAGAACATATTCAATAATACCCCTAGGA
AATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTAA
TTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTATTAA
TAGTCAAACACT
Found at i:84558925 original size:50 final size:50
Alignment explanation
Indices: 84558852--84559087 Score: 233
Period size: 50 Copynumber: 4.7 Consensus size: 50
84558842 TAAGATGGTT
* * *
84558852 TTAGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * *
84558902 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* ** * * *
84558952 CTACAATCACGTGTGTAGTACTAAGTGCAGGCTACTACGAGTATCAGATAG
1 TTA-GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * *
84559003 TTAGGTCACGTGTGTAGTATTAAGTGCAAGTTATTACGTGTACCGGATTA-
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAG
* *
84559053 TT-GGTCGCATGTGTAGTTCTAAGTGCAGGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
84559088 TTCCTACCAG
Statistics
Matches: 147, Mismatches: 37, Indels: 5
0.78 0.20 0.03
Matches are distributed among these distances:
49 26 0.18
50 80 0.54
51 41 0.28
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:84559046 original size:101 final size:101
Alignment explanation
Indices: 84558856--84559046 Score: 283
Period size: 101 Copynumber: 1.9 Consensus size: 101
84558846 ATGGTTTTAG
* *
84558856 ATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGAAGGCTACTACGAGTACCAGATAGTTAGGTCACATGTGTAGTA
* *
84558921 CTAAGTGCAGGCTACTATGCGTACCCGACAACTACA
66 CTAAGTGCAAGCTACTACGCGTACCCGACAACTACA
* * *
84558957 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGAGTATCAGATAGTTAGGTCACGTGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGAAGGCTACTACGAGTACCAGATAGTTAGGTCACATGTGTAGTA
* * * *
84559022 TTAAGTGCAAGTTATTACGTGTACC
66 CTAAGTGCAAGCTACTACGCGTACC
84559047 GGATTATTGG
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 79 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (101 bp):
ATCACGTGTGTAGTACTAAGTGAAGGCTACTACGAGTACCAGATAGTTAGGTCACATGTGTAGTA
CTAAGTGCAAGCTACTACGCGTACCCGACAACTACA
Found at i:84562956 original size:16 final size:16
Alignment explanation
Indices: 84562930--84562969 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
84562920 CTTTGCTGGC
*
84562930 CTTTTTT-TCTTTTTT
1 CTTTTTTATCTTTTCT
84562945 CTTTTTTATCTTTTCT
1 CTTTTTTATCTTTTCT
84562961 CTTTCTTTA
1 CTTT-TTTA
84562970 GGTAAAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.32
16 11 0.50
17 4 0.18
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (16 bp):
CTTTTTTATCTTTTCT
Found at i:84563950 original size:20 final size:20
Alignment explanation
Indices: 84563922--84563966 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
84563912 GATTTAAAGT
* *
84563922 ATATTTTAATCTAAATTTAA
1 ATATATTAATCTAAATCTAA
84563942 ATATATTAATCTAAATCTAA
1 ATATATTAATCTAAATCTAA
84563962 ATATA
1 ATATA
84563967 ATTCGCACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (20 bp):
ATATATTAATCTAAATCTAA
Found at i:84582771 original size:20 final size:21
Alignment explanation
Indices: 84582732--84582773 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
84582722 AGCATACAGT
*
84582732 TATATTTTAAAGAATAAAATA
1 TATATCTTAAAGAATAAAATA
*
84582753 TATATCTTAAA-ATTAAAATA
1 TATATCTTAAAGAATAAAATA
84582773 T
1 T
84582774 TATTATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TATATCTTAAAGAATAAAATA
Found at i:84583168 original size:20 final size:20
Alignment explanation
Indices: 84583127--84583168 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
84583117 GTAAATAATT
*
84583127 ATTTAATATATTTTACTTTC
1 ATTTAATATATTTTACTCTC
*
84583147 ATTTAATTTAATTTTA-TCTC
1 ATTTAATAT-ATTTTACTCTC
84583167 AT
1 AT
84583169 AGCTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTAATATATTTTACTCTC
Found at i:84584197 original size:29 final size:30
Alignment explanation
Indices: 84584146--84584213 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
84584136 TTTATTATGG
*
84584146 TGTACTTGTACTTTTATAAAATGTTTAACGT
1 TGTACTTGTAC-TTTAGAAAATGTTTAACGT
*
84584177 TGTACTTGTA-TTTAGAAAATGTTTAATGT
1 TGTACTTGTACTTTAGAAAATGTTTAACGT
*
84584206 AGTACTTG
1 TGTACTTG
84584214 AATTATCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 24 0.71
31 10 0.29
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.47
Consensus pattern (30 bp):
TGTACTTGTACTTTAGAAAATGTTTAACGT
Found at i:84584224 original size:29 final size:28
Alignment explanation
Indices: 84584159--84584227 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
84584149 ACTTGTACTT
* *
84584159 TTATAAAATGTTTAACGTTGTACTTGTAT
1 TTATAAAATGTTTAACGTAGTACTTG-AA
* *
84584188 TTAGAAAATGTTTAATGTAGTACTTGAA
1 TTATAAAATGTTTAACGTAGTACTTGAA
84584216 TTATCAAAATGT
1 TTAT-AAAATGT
84584228 GTTTTATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 4 0.12
29 30 0.88
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.43
Consensus pattern (28 bp):
TTATAAAATGTTTAACGTAGTACTTGAA
Found at i:84584462 original size:56 final size:56
Alignment explanation
Indices: 84584383--84584536 Score: 209
Period size: 56 Copynumber: 2.8 Consensus size: 56
84584373 AGTAGTTAGG
* * * * **
84584383 TAGGAATCAAATTACTAAAAGATAATATCCCATAACAATATTCTATAATATCTTAT
1 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAACATCCCAT
* * * * *
84584439 TAGGAAACAAATTGCTAAGAGATAATATCTCATAATAATATCCTATCACATCCCGT
1 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAACATCCCAT
84584495 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATC
1 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATC
84584537 TTAACACCCC
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 84 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (56 bp):
TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAACATCCCAT
Found at i:84604797 original size:19 final size:19
Alignment explanation
Indices: 84604773--84604812 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
84604763 GAAACCCGTC
*
84604773 AGGACCACTACTGTTCGAT
1 AGGACCAATACTGTTCGAT
*
84604792 AGGACCAATACTGTTTGAT
1 AGGACCAATACTGTTCGAT
84604811 AG
1 AG
84604813 TGAGATCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (19 bp):
AGGACCAATACTGTTCGAT
Found at i:84617438 original size:46 final size:46
Alignment explanation
Indices: 84617268--84617474 Score: 199
Period size: 46 Copynumber: 4.5 Consensus size: 46
84617258 TGTGTGAGCT
* * * * *
84617268 AGTGTAAGACATGTCTGGGACATGCATCGGTCAC-ATTATGTGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAAGCC
* * * * *
84617314 AGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGATG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCC
*
84617362 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
* *
84617408 AGTGTAAGACATGTCTGGGATATGCATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
*
84617452 AGTGTAAGACCATGTATGGGACA
1 AGTGTAAGA-CATGTCTGGGACA
84617475 GGGCGTTGAT
Statistics
Matches: 137, Mismatches: 17, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
44 11 0.08
45 13 0.09
46 62 0.45
47 28 0.20
48 22 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:84620877 original size:27 final size:27
Alignment explanation
Indices: 84620521--84620864 Score: 375
Period size: 27 Copynumber: 12.7 Consensus size: 27
84620511 TTAGTTTACC
*
84620521 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* **
84620548 AAATTACCAAAATACTCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
84620575 AAATTACCAAAATACCCCTGGTCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
84620602 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
84620629 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
84620656 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
84620683 AAAGTACCAAAATA-CCTCTAGTTTGTA
1 AAATTACCAAAATACCCT-TGGTTTGTA
*
84620710 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
84620737 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
84620764 GAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
*** * * ***
84620791 AAATTATTGAAATATCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** **
84620818 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
84620845 AAATTACCAAAGTACCCTTG
1 AAATTACCAAAATACCCTTG
84620865 ATTTATAGAA
Statistics
Matches: 265, Mismatches: 50, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 3 0.01
27 260 0.98
28 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:84620930 original size:27 final size:27
Alignment explanation
Indices: 84620900--84621311 Score: 468
Period size: 27 Copynumber: 15.3 Consensus size: 27
84620890 CGATTTACAA
* *
84620900 AATTACCGAAACACCACTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
84620927 AATTAGCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
**
84620954 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
84620981 AATTACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * * *
84621008 AATTATCAAAATACCCCTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
84621035 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * * *
84621062 AATTATCGAAATACCCTTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
84621089 AATTACTGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
84621116 AATTACAGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
84621143 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
84621170 AATTACCGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
84621197 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
84621224 AATTACCTAAATACCCTTGT-AGGTTAG
1 AATTACCGAAATACCCCTGTAAGG-TAG
* * **
84621251 AAATACTGATTTACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
84621278 AATTACCGAGATACCCTCT-TAGGGTAA
1 AATTACCGAAATACCC-CTGTAAGGTAG
84621305 AATTACC
1 AATTACC
84621312 ATTTTGCCCC
Statistics
Matches: 328, Mismatches: 54, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
26 2 0.01
27 321 0.98
28 5 0.02
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:84622105 original size:31 final size:31
Alignment explanation
Indices: 84622070--84622148 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
84622060 TTGCATTCAC
* *
84622070 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* * **
84622101 ATTCTGATTCTAATTCTGTCACCTGATTTTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
84622132 ATTTTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
84622149 AGTTCTGATA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:84626087 original size:56 final size:56
Alignment explanation
Indices: 84625996--84626149 Score: 211
Period size: 56 Copynumber: 2.8 Consensus size: 56
84625986 GGTGTCATAG
* *
84625996 TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATCCTATAATATCCCAT
1 TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATCCTATAACATCCAAT
* * *
84626052 TAGGAATCAAATTGCTAAAAGATCATGTCTC-ATAATAATATCCTATAACATCTAAT
1 TAGGAATCAAATTGCTAAAAGATAATATC-CAATAATAATATCCTATAACATCCAAT
* * * *
84626108 TAGGAATCAAATTGCTAAAAGTTAACATCCCATGATAATATC
1 TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATC
84626150 TTAACAACTA
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 1 0.01
56 84 0.98
57 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (56 bp):
TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATCCTATAACATCCAAT
Found at i:84629234 original size:40 final size:40
Alignment explanation
Indices: 84629190--84629335 Score: 247
Period size: 40 Copynumber: 3.6 Consensus size: 40
84629180 TTGGCTCGGA
* * *
84629190 TATAACAACCCGCACAAATGCCTTCGGGACTTAACCCGAT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
84629230 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
* *
84629270 TATAATAACCTGCACGAATGCCTTTGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
84629310 TATAATAACCCGCACGAATGCCTTCG
1 TATAATAACCCGCACGAATGCCTTCG
84629336 ACATATATAT
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
Found at i:84646715 original size:48 final size:48
Alignment explanation
Indices: 84646644--84646739 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
84646634 TGAGAAGGAT
*
84646644 GATTAAATGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
1 GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
*
84646692 GATTAAAGGCTGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
1 GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
84646740 ACTAGGCTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.39
Consensus pattern (48 bp):
GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
Found at i:84648089 original size:22 final size:23
Alignment explanation
Indices: 84648055--84648100 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
84648045 TTGCCATAAA
84648055 ACCATAAACAGAAGCTCAAAAGT
1 ACCATAAACAGAAGCTCAAAAGT
* *
84648078 ACCA-AAATAGAAGCTCAATAGT
1 ACCATAAACAGAAGCTCAAAAGT
84648100 A
1 A
84648101 TGATGCAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.52, C:0.20, G:0.13, T:0.15
Consensus pattern (23 bp):
ACCATAAACAGAAGCTCAAAAGT
Found at i:84655936 original size:28 final size:28
Alignment explanation
Indices: 84655872--84655981 Score: 127
Period size: 28 Copynumber: 4.0 Consensus size: 28
84655862 AGTATGGCTG
* *
84655872 CCAG-AACAGATA-TTATGACAGAGTCC-
1 CCAGAAACAGATATTTGTGGCAGAG-CCA
* *
84655898 CCAGATACAGATATTTGTGGCAGTGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
* *
84655926 CCAGAATCAGATATTTGTGGTAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
*
84655954 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
84655982 GTAGAACGCT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.06
27 9 0.13
28 57 0.81
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:84656147 original size:26 final size:26
Alignment explanation
Indices: 84656090--84656152 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
84656080 CAAAACTAAC
**
84656090 CCTAGGGGTATAATGGTAATTTTGCA
1 CCTAGGGGTATAATGGTAATTTCACA
* *
84656116 CCTAGGGGTATAGTGGTAATTTCATA
1 CCTAGGGGTATAATGGTAATTTCACA
*
84656142 CTTAGGGGTAT
1 CCTAGGGGTAT
84656153 TTTAGTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.25, C:0.11, G:0.29, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTATAATGGTAATTTCACA
Found at i:84659462 original size:64 final size:63
Alignment explanation
Indices: 84659381--84659505 Score: 171
Period size: 64 Copynumber: 2.0 Consensus size: 63
84659371 TGATTAAACT
* * * *
84659381 TAATCACTTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTACATTAAATATTAAGA
1 TAATCACTTTTAATATTAAATTAATACAATA-CTATCAAAATAAATATTAAATTAAAT-TTAAGA
* *
84659446 TAATCAC-TTTAATATTAAATTAATACAATACTATTAAAATAAGTATTAAATTAAATTTAA
1 TAATCACTTTTAATATTAAATTAATACAATACTATCAAAATAAATATTAAATTAAATTTAA
84659506 TATTAAACCA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
62 4 0.07
63 21 0.39
64 22 0.41
65 7 0.13
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.41
Consensus pattern (63 bp):
TAATCACTTTTAATATTAAATTAATACAATACTATCAAAATAAATATTAAATTAAATTTAAGA
Found at i:84659964 original size:19 final size:19
Alignment explanation
Indices: 84659926--84659965 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
84659916 AAAATATCAT
*
84659926 ATTAATTTTAATTTATTTG
1 ATTAATTTTAATTTACTTG
84659945 ATTAA-TTTAATTGTACTTG
1 ATTAATTTTAATT-TACTTG
84659964 AT
1 AT
84659966 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (19 bp):
ATTAATTTTAATTTACTTG
Found at i:84665209 original size:135 final size:135
Alignment explanation
Indices: 84664967--84665237 Score: 533
Period size: 135 Copynumber: 2.0 Consensus size: 135
84664957 GGGAAAAACG
84664967 TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
1 TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
84665032 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
66 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
84665097 ATTCA
131 ATTCA
84665102 TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
1 TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
*
84665167 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTTGTAATAAATATGTG
66 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
84665232 ATTCA
131 ATTCA
84665237 T
1 T
84665238 TATATAAAAA
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 135 1.00
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (135 bp):
TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
ATTCA
Found at i:84665703 original size:23 final size:23
Alignment explanation
Indices: 84665677--84665729 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
84665667 GGTATTTCGA
*
84665677 TGCAAATGATAGTGGCACTTAAG
1 TGCAAATGAAAGTGGCACTTAAG
* *
84665700 TGCAAGTGAAAGTGGCACTTTAG
1 TGCAAATGAAAGTGGCACTTAAG
84665723 TGCAAAT
1 TGCAAAT
84665730 TAGTGATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.26
Consensus pattern (23 bp):
TGCAAATGAAAGTGGCACTTAAG
Found at i:84680577 original size:17 final size:16
Alignment explanation
Indices: 84680546--84680588 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
84680536 GGGAAATCGA
*
84680546 AAAAGGAAAGGGAAAG
1 AAAATGAAAGGGAAAG
84680562 AAAATGAAAGGCGAAAG
1 AAAATGAAAGG-GAAAG
*
84680579 AGAATGAAAG
1 AAAATGAAAG
84680589 AAAGAATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.60, C:0.02, G:0.33, T:0.05
Consensus pattern (16 bp):
AAAATGAAAGGGAAAG
Found at i:84687940 original size:22 final size:22
Alignment explanation
Indices: 84687909--84687953 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
84687899 GCTTGTACGG
84687909 GTTTAACACTTCT-GTGCTCTCT
1 GTTTAACACTT-TGGTGCTCTCT
*
84687931 GTTTAGCACTTTGGTGCTCTCT
1 GTTTAACACTTTGGTGCTCTCT
84687953 G
1 G
84687954 GTATGGTGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.44
Consensus pattern (22 bp):
GTTTAACACTTTGGTGCTCTCT
Found at i:84688350 original size:12 final size:12
Alignment explanation
Indices: 84688333--84688361 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
84688323 AGAGGAAAGT
84688333 AACTACGTAAGG
1 AACTACGTAAGG
84688345 AACTACGTAAGG
1 AACTACGTAAGG
84688357 AACTA
1 AACTA
84688362 GTGCTTAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (12 bp):
AACTACGTAAGG
Found at i:84689391 original size:26 final size:24
Alignment explanation
Indices: 84689350--84689404 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
84689340 TGAGTTCAAT
* *
84689350 AGAGCTTACTGTTCATTAGCTCAGAA
1 AGAGCTTAATGATCA-TAGCTC-GAA
*
84689376 TGAGCTTAATGATCATAGCTCGAA
1 AGAGCTTAATGATCATAGCTCGAA
84689400 AGAGC
1 AGAGC
84689405 GAATACGATG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 7 0.28
25 6 0.24
26 12 0.48
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (24 bp):
AGAGCTTAATGATCATAGCTCGAA
Found at i:84689554 original size:19 final size:19
Alignment explanation
Indices: 84689530--84689609 Score: 81
Period size: 19 Copynumber: 4.2 Consensus size: 19
84689520 AAAAGCTATG
*
84689530 TGTTATACGGATGAATTAT
1 TGTTATACGGATGAATTAC
* * *
84689549 TGTTATAGGGTTGAAGTAC
1 TGTTATACGGATGAATTAC
* *
84689568 TGTTTATACGGATCAGTTAC
1 TG-TTATACGGATGAATTAC
*
84689588 TGTTAT-CGAATGAATTAC
1 TGTTATACGGATGAATTAC
84689606 TGTT
1 TGTT
84689610 TATATGATTG
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
18 13 0.27
19 21 0.44
20 14 0.29
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.41
Consensus pattern (19 bp):
TGTTATACGGATGAATTAC
Found at i:84689588 original size:20 final size:20
Alignment explanation
Indices: 84689565--84689613 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
84689555 AGGGTTGAAG
* *
84689565 TACTGTTTATACGGATCAGT
1 TACTGTTTATACGAATCAAT
*
84689585 TACTG-TTAT-CGAATGAAT
1 TACTGTTTATACGAATCAAT
84689603 TACTGTTTATA
1 TACTGTTTATA
84689614 TGATTGAGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 11 0.46
19 8 0.33
20 5 0.21
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (20 bp):
TACTGTTTATACGAATCAAT
Found at i:84700392 original size:46 final size:45
Alignment explanation
Indices: 84700325--84700499 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
84700315 TGTAACCCGC
*
84700325 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTT-GCAT
*
84700371 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G--T-GTTGCAT
* * * *
84700421 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GTGTTGCAT
* *
84700464 CCAAAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
84700500 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 63 0.57
47 28 0.25
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTGCAT
Found at i:84700464 original size:93 final size:93
Alignment explanation
Indices: 84700333--84700504 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
84700323 GCCCATAAGT
* *** *
84700333 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAAAAGTGAACTCGGACTCAACTCAA
84700398 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
84700426 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAAAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAAAAGTGAACTCGGACTCAACTCAA
*
84700491 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
84700505 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAAAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:84700519 original size:46 final size:46
Alignment explanation
Indices: 84700376--84700519 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 46
84700366 CGCATCCATA
* * * *
84700376 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* * *
84700424 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCAAA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
*
84700469 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
84700515 AGTGA
1 AGTGA
84700520 CATGTCACTT
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 34 0.45
47 28 0.37
48 5 0.07
50 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:84710581 original size:18 final size:17
Alignment explanation
Indices: 84710554--84710588 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
84710544 AATCCTCCTA
*
84710554 TTTTATTTTTATTTTTC
1 TTTTATTTTTAGTTTTC
84710571 TTTTGATTTTTAGTTTTC
1 TTTT-ATTTTTAGTTTTC
84710589 AATTTTCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.77
Consensus pattern (17 bp):
TTTTATTTTTAGTTTTC
Found at i:84713520 original size:13 final size:13
Alignment explanation
Indices: 84713504--84713536 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
84713494 TTTGATTAAA
*
84713504 TTAGTTAATTAGT
1 TTAGATAATTAGT
84713517 TTAGATAATTAGT
1 TTAGATAATTAGT
84713530 TTA-ATAA
1 TTAGATAA
84713537 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:84714789 original size:20 final size:20
Alignment explanation
Indices: 84714761--84714826 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
84714751 AGGAAAATTA
84714761 TGTGATCTGAACTCATGAGT
1 TGTGATCTGAACTCATGAGT
* ** *
84714781 TGTGGTCTGAGTTCATGATTT
1 TGTGATCTGAACTCATGA-GT
* *
84714802 ATGTGATTTGAACTAATGAGT
1 -TGTGATCTGAACTCATGAGT
84714823 TGTG
1 TGTG
84714827 GTTTGAGTTT
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
20 19 0.56
21 2 0.06
22 13 0.38
ACGTcount: A:0.23, C:0.09, G:0.27, T:0.41
Consensus pattern (20 bp):
TGTGATCTGAACTCATGAGT
Found at i:84714821 original size:42 final size:42
Alignment explanation
Indices: 84714758--84714842 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
84714748 ACTAGGAAAA
*
84714758 TTATGTGATCTGAACTCATGAGTTGTGGTCTGAGTTCATGAT
1 TTATGTGATCTGAACTAATGAGTTGTGGTCTGAGTTCATGAT
* * *
84714800 TTATGTGATTTGAACTAATGAGTTGTGGTTTGAGTTTATGAT
1 TTATGTGATCTGAACTAATGAGTTGTGGTCTGAGTTCATGAT
84714842 T
1 T
84714843 ATGAGTCACA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.22, C:0.07, G:0.26, T:0.45
Consensus pattern (42 bp):
TTATGTGATCTGAACTAATGAGTTGTGGTCTGAGTTCATGAT
Found at i:84714840 original size:20 final size:20
Alignment explanation
Indices: 84714775--84714840 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
84714765 ATCTGAACTC
* *
84714775 ATGAGTTGTGGTCTGAGTTC
1 ATGAGTTGTGGTTTGAGTTA
* * **
84714795 ATGATTTATGTGATTTGAACTA
1 ATGA-GT-TGTGGTTTGAGTTA
*
84714817 ATGAGTTGTGGTTTGAGTTT
1 ATGAGTTGTGGTTTGAGTTA
84714837 ATGA
1 ATGA
84714841 TTATGAGTCA
Statistics
Matches: 33, Mismatches: 11, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
20 18 0.55
21 2 0.06
22 13 0.39
ACGTcount: A:0.23, C:0.05, G:0.29, T:0.44
Consensus pattern (20 bp):
ATGAGTTGTGGTTTGAGTTA
Found at i:84722038 original size:50 final size:49
Alignment explanation
Indices: 84721920--84722236 Score: 197
Period size: 46 Copynumber: 6.7 Consensus size: 49
84721910 GTAAAGTGCT
*
84721920 GATGCCATGTCCCAGT-CATGGTCTTACACTAGCTATCATCTTCGAGGCC
1 GATGCCATGTCCCA-TACATGGTCTTACACTAGCTATCATCTCCGAGGCC
* * * *
84721969 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCA-CATAACCG-TGTC
1 GATGCCATGTCCCATACATGGTCTTACACTAGCTATCATC-T--CCGAGGCC
*
84722019 GATGCCATGTCCCATACATGGTCTTACA-TTGAC-A-CATCT-CGTA-GCC
1 GATGCCATGTCCCATACATGGTCTTACACTAG-CTATCATCTCCG-AGGCC
* * * * **
84722065 GATG-CATGTCCCAGACAT-GTCTTGCACTAGCT-TACGTC-CCAAGGTT
1 GATGCCATGTCCCATACATGGTCTTACACTAGCTAT-CATCTCCGAGGCC
* * * * *
84722111 GATG-CATGTCCCAGACAT-TTCTTACACTAG-TACTCGTCT-CAATGCC
1 GATGCCATGTCCCATACATGGTCTTACACTAGCTA-TCATCTCCGAGGCC
* * * * * *
84722157 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT--GTGGCC
1 GATGCCATGTCCCATACATGGTCTTACACTAGCTATCAT-CTCCGAGGCC
*
84722205 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT
1 GATGCCATGTCCCATACATGGTCTTACACTAGCT
84722237 CACACAAATG
Statistics
Matches: 215, Mismatches: 32, Indels: 45
0.74 0.11 0.15
Matches are distributed among these distances:
44 8 0.04
45 19 0.09
46 64 0.30
47 27 0.13
48 24 0.11
49 41 0.19
50 30 0.14
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCATACATGGTCTTACACTAGCTATCATCTCCGAGGCC
Found at i:84733825 original size:18 final size:18
Alignment explanation
Indices: 84733782--84733817 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
84733772 TTCAAACGAT
84733782 TAATAAAATATAATAAGC
1 TAATAAAATATAATAAGC
*
84733800 TAATAAAATCTAATAAGC
1 TAATAAAATATAATAAGC
84733818 ATATAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.28
Consensus pattern (18 bp):
TAATAAAATATAATAAGC
Found at i:84742579 original size:23 final size:23
Alignment explanation
Indices: 84742553--84742603 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
84742543 ATCTTGTTAT
84742553 TATTTTCTAAATTGTATGATAAA
1 TATTTTCTAAATTGTATGATAAA
84742576 TATTTTCTAAATTGTATGATAAA
1 TATTTTCTAAATTGTATGATAAA
84742599 TATTT
1 TATTT
84742604 AACTTCTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.51
Consensus pattern (23 bp):
TATTTTCTAAATTGTATGATAAA
Found at i:84742631 original size:20 final size:20
Alignment explanation
Indices: 84742606--84742645 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
84742596 AAATATTTAA
84742606 CTTCTTAATTATGTGTTCTT
1 CTTCTTAATTATGTGTTCTT
84742626 CTTCTTAATTATGTGTTCTT
1 CTTCTTAATTATGTGTTCTT
84742646 AATTCTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.10, T:0.60
Consensus pattern (20 bp):
CTTCTTAATTATGTGTTCTT
Found at i:84761602 original size:28 final size:27
Alignment explanation
Indices: 84761556--84761608 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
84761546 TGAAGGTGTT
84761556 TCATAAAAAATGGAACAAAGAACTATTA
1 TCATAAAAAATGGAACAAAG-ACTATTA
*
84761584 TCATAAAAAAATGG-GCAAAGACTAT
1 TCAT-AAAAAATGGAACAAAGACTAT
84761609 CCATTAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.22
28 9 0.39
29 9 0.39
ACGTcount: A:0.55, C:0.11, G:0.13, T:0.21
Consensus pattern (27 bp):
TCATAAAAAATGGAACAAAGACTATTA
Found at i:84795215 original size:17 final size:18
Alignment explanation
Indices: 84795193--84795226 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84795183 TCAATTGGGC
84795193 CGTGT-GGACCACACGGG
1 CGTGTGGGACCACACGGG
*
84795210 CGTGTGGGCCCACACGG
1 CGTGTGGGACCACACGG
84795227 TTGAACCCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.15, C:0.32, G:0.41, T:0.12
Consensus pattern (18 bp):
CGTGTGGGACCACACGGG
Found at i:84795321 original size:17 final size:17
Alignment explanation
Indices: 84795299--84795371 Score: 110
Period size: 17 Copynumber: 4.2 Consensus size: 17
84795289 TTTGGGCCAT
*
84795299 GTGGGCCACACGAGCGC
1 GTGGGCCACACGGGCGC
84795316 GTGGGCCACACGGGCGC
1 GTGGGCCACACGGGCGC
84795333 GTGGGCCACACGGGCGC
1 GTGGGCCACACGGGCGC
*
84795350 GTGGGCCTACATGGGCAGC
1 GTGGGCC-ACACGGGC-GC
84795369 GTG
1 GTG
84795372 TGAGGCCATT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
17 40 0.77
18 7 0.13
19 5 0.10
ACGTcount: A:0.14, C:0.32, G:0.45, T:0.10
Consensus pattern (17 bp):
GTGGGCCACACGGGCGC
Found at i:84804485 original size:39 final size:40
Alignment explanation
Indices: 84804411--84804491 Score: 119
Period size: 39 Copynumber: 2.0 Consensus size: 40
84804401 CACAGAAAAG
* *
84804411 TCAATCTAGAAAAATAAAGGAAGAACTACATGAAGTTAAT
1 TCAATCTAGAAAAATAAAGAAAGAACTACAGGAAGTTAAT
**
84804451 TCAATCTAGAAAAATAAA-AAAGAACTGTAGGAAGTTAAT
1 TCAATCTAGAAAAATAAAGAAAGAACTACAGGAAGTTAAT
84804490 TC
1 TC
84804492 CACATTCCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 19 0.51
40 18 0.49
ACGTcount: A:0.52, C:0.10, G:0.15, T:0.23
Consensus pattern (40 bp):
TCAATCTAGAAAAATAAAGAAAGAACTACAGGAAGTTAAT
Found at i:84806740 original size:26 final size:27
Alignment explanation
Indices: 84806657--84806749 Score: 73
Period size: 27 Copynumber: 3.5 Consensus size: 27
84806647 TAGTGATAAT
* ** *
84806657 CATGAACGAAAAGCCTTTCTGGCAAAA
1 CATGAAAGAAAATTCTTTGTGGCAAAA
* * ** *
84806684 TATAAAAGAAAATTCTTTGTGGTGAAT
1 CATGAAAGAAAATTCTTTGTGGCAAAA
84806711 CATGAAAG-AAATAT-TTTGTGGCAAAA
1 CATGAAAGAAAAT-TCTTTGTGGCAAAA
*
84806737 CATGAAAAAAAAT
1 CATGAAAGAAAAT
84806750 CATTGTAACG
Statistics
Matches: 49, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
26 20 0.41
27 29 0.59
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (27 bp):
CATGAAAGAAAATTCTTTGTGGCAAAA
Found at i:84806782 original size:27 final size:27
Alignment explanation
Indices: 84806752--84806809 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
84806742 AAAAAAATCA
84806752 TTGTAACGAAATATGAAAGAAAAGCCT
1 TTGTAACGAAATATGAAAGAAAAGCCT
* * * * * *
84806779 TTGTGATGAATTATGAAGGGATAGCCT
1 TTGTAACGAAATATGAAAGAAAAGCCT
84806806 TTGT
1 TTGT
84806810 GGCAAACCCT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (27 bp):
TTGTAACGAAATATGAAAGAAAAGCCT
Found at i:84806828 original size:27 final size:27
Alignment explanation
Indices: 84806798--84806855 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
84806788 ATTATGAAGG
84806798 GATAGCCTTTGTGGCAAACCCTACAAT
1 GATAGCCTTTGTGGCAAACCCTACAAT
* *
84806825 GATAGCTTTTGTGGCAAATCCTACAAT
1 GATAGCCTTTGTGGCAAACCCTACAAT
84806852 GATA
1 GATA
84806856 ACTTTTATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (27 bp):
GATAGCCTTTGTGGCAAACCCTACAAT
Found at i:84806860 original size:27 final size:27
Alignment explanation
Indices: 84806805--84806866 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
84806795 AGGGATAGCC
*
84806805 TTTGTGGCAAACCCTACAATGATAGCT
1 TTTGTGGCAAACCCTACAATGATAACT
*
84806832 TTTGTGGCAAATCCTACAATGATAACT
1 TTTGTGGCAAACCCTACAATGATAACT
*
84806859 TTTATGGC
1 TTTGTGGC
84806867 GATAATTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (27 bp):
TTTGTGGCAAACCCTACAATGATAACT
Found at i:84810199 original size:50 final size:50
Alignment explanation
Indices: 84810124--84810371 Score: 320
Period size: 50 Copynumber: 4.9 Consensus size: 50
84810114 TAAGACAGTT
*
84810124 TTAGGTCACGTGTGTAGTACCAAGTGCAGGCTACTACGTGCTA-CAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTG-TACCAGATTG
* * * * *
84810174 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
84810224 CTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTTTCC-GATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTG-TACCAGATTG
84810275 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * *
84810325 TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
84810372 GAGCTTCAGT
Statistics
Matches: 173, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
49 5 0.03
50 125 0.72
51 40 0.23
52 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:84810260 original size:101 final size:100
Alignment explanation
Indices: 84810078--84810360 Score: 323
Period size: 101 Copynumber: 2.8 Consensus size: 100
84810068 GTTTTGAGAA
* * ** *** * *
84810078 CACATGTGTAGTACTATGTGCAAGCTACTTTGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGATCACGTGTGTAGTA
* *
84810143 CCAAGTGCAGGCTACTACGTGCTACAGATTGTTAGGT
64 CTAAGTGCAGGCTACTACGTGCTACAGATGGTTAGGT
* * * *
84810180 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCGATCACGTGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-TTAGATCACGTGTGTAGTAC
* * * *
84810245 TAAGTGCAGGCTACTATGTGTTTCCGATGGTTAGGT
65 TAAGTGCAGGCTACTACGTGCTACAGATGGTTAGGT
* * * *
84810281 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGATCACGTGTGTAGTACT
*
84810346 AAGTGTAGGCTACTA
66 AAGTGCAGGCTACTA
84810361 TGCGTACCAG
Statistics
Matches: 154, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
100 32 0.21
101 87 0.56
102 35 0.23
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (100 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGATCACGTGTGTAGTACT
AAGTGCAGGCTACTACGTGCTACAGATGGTTAGGT
Found at i:84810358 original size:151 final size:153
Alignment explanation
Indices: 84810082--84810378 Score: 447
Period size: 151 Copynumber: 2.0 Consensus size: 153
84810072 TGAGAACACA
* * *
84810082 TGTGTAGTACTATGTGCAAGCTACTTTGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTACCAA
1 TGTGTAGTACTAAGTGCAAGCTACTATGTGTTTAAGACAGTGTTAGGTCACGTGTGTAGTACCAA
*
84810147 GTGCAGGCTACTACGTGCTACAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
66 GTGCAGGCTACTACGTGCTACAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
* * *
84810212 TGTACCCGATAGCTTCGATCACG
131 CGTACCAGAGAGCTTCGATCACG
* ** * *
84810235 TGTGTAGTACTAAGTGCAGGCTACTATGTGTTTCCGA-TG-GTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAAGCTACTATGTGTTTAAGACAGTGTTAGGTCACGTGTGTAGTACCAA
*
84810298 GTGCAGGCTACTACGTG-TACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTAT
66 GTGCAGGCTACTACGTGCTA-CAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTAT
84810362 GCGTACCAGAGAGCTTC
130 GCGTACCAGAGAGCTTC
84810379 AGTTACAAGG
Statistics
Matches: 130, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
150 2 0.02
151 95 0.73
152 1 0.01
153 32 0.25
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (153 bp):
TGTGTAGTACTAAGTGCAAGCTACTATGTGTTTAAGACAGTGTTAGGTCACGTGTGTAGTACCAA
GTGCAGGCTACTACGTGCTACAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
CGTACCAGAGAGCTTCGATCACG
Found at i:84813533 original size:45 final size:47
Alignment explanation
Indices: 84813465--84813553 Score: 128
Period size: 45 Copynumber: 1.9 Consensus size: 47
84813455 TCAAAATATA
*
84813465 TTTTACATCGATTTTTTAATGACATTATAGGTATGTCAT-ATCTCAT
1 TTTTACATCAATTTTTTAATGACATTATAGGTATGTCATGATCTCAT
* * *
84813511 TTTTACAT-AATTTTTTATTGACATTATGGGTGTGTCATGATCT
1 TTTTACATCAATTTTTTAATGACATTATAGGTATGTCATGATCT
84813554 TTTTTATATC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 26 0.68
46 12 0.32
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.49
Consensus pattern (47 bp):
TTTTACATCAATTTTTTAATGACATTATAGGTATGTCATGATCTCAT
Found at i:84817655 original size:19 final size:17
Alignment explanation
Indices: 84817631--84817688 Score: 52
Period size: 19 Copynumber: 3.4 Consensus size: 17
84817621 TCCAAAATCA
84817631 AAATTTAAGCAAAAACATT
1 AAATTTAA-CAAAAA-ATT
84817650 AAATTT---AAAAAA-T
1 AAATTTAACAAAAAATT
84817663 AAATTTAAACAAAAATATT
1 AAATTT-AACAAAAA-ATT
84817682 AAATTTA
1 AAATTTA
84817689 TTTAAAACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
13 7 0.21
14 1 0.03
15 5 0.15
17 5 0.15
18 2 0.06
19 13 0.39
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (17 bp):
AAATTTAACAAAAAATT
Found at i:84817795 original size:13 final size:13
Alignment explanation
Indices: 84817777--84817801 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84817767 ATATAATATA
84817777 ATATATTATTTTT
1 ATATATTATTTTT
84817790 ATATATTATTTT
1 ATATATTATTTT
84817802 ATTTATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATATATTATTTTT
Found at i:84817803 original size:18 final size:18
Alignment explanation
Indices: 84817772--84817813 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
84817762 TTATAATATA
* *
84817772 ATATAATATATTATTTTT
1 ATATATTATATTATTTAT
*
84817790 ATATATTATTTTATTTAT
1 ATATATTATATTATTTAT
84817808 ATATAT
1 ATATAT
84817814 AAAGATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATATATTATATTATTTAT
Found at i:84834273 original size:40 final size:39
Alignment explanation
Indices: 84834122--84834266 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 39
84834112 TCGAATGATG
* * * *
84834122 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
84834162 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
*
84834202 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84834241 TCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
84834267 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 34 0.39
40 46 0.53
41 7 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84842234 original size:40 final size:40
Alignment explanation
Indices: 84842043--84842227 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
84842033 TCGAATGATG
* * * * *
84842043 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
84842083 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
84842123 TCTGGGTTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84842162 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
84842203 -CCGGGTTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
84842228 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84842249 original size:79 final size:79
Alignment explanation
Indices: 84842096--84842250 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
84842086 GGACTAAGAT
* * **
84842096 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGTTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGTTAAGCCCGAAGGCATTGGAACGAGTTACTAA
84842161 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
84842175 CCGAAGGCATTTGTGCGAGTTA-TTATAACCGGGTTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGTTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
84842238 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
84842251 ATTCTGAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.05
79 37 0.58
80 24 0.38
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGTTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:84849858 original size:26 final size:27
Alignment explanation
Indices: 84849811--84849863 Score: 65
Period size: 29 Copynumber: 2.0 Consensus size: 27
84849801 GTTGGTATTA
*
84849811 AATAATAAAATTATTATTAAATATCAAAT
1 AATAATAAAATTA-TATGAAAT-TCAAAT
84849840 AATAATAAAA-TA-ATGAAATTCAAA
1 AATAATAAAATTATATGAAATTCAAA
84849864 CAATGAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 5 0.22
26 6 0.26
28 2 0.09
29 10 0.43
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (27 bp):
AATAATAAAATTATATGAAATTCAAAT
Found at i:84852312 original size:50 final size:50
Alignment explanation
Indices: 84852209--84852395 Score: 223
Period size: 50 Copynumber: 3.8 Consensus size: 50
84852199 AAGTACCCTG
* * * * **
84852209 CCACAAAGGCTTTACA-ATGACTCGCCACAAAGGTTTCCCAAATAGATCG
1 CCACAAAGGCTTTACAGGTGACTCGCCACAAAAGCTTCCCAAATAAATAA
* * * * *
84852258 CCACAAAGGCTTTACAGGGGACTTGCCACAGAGGCTTCCCAAATAAATTA
1 CCACAAAGGCTTTACAGGTGACTCGCCACAAAAGCTTCCCAAATAAATAA
* * * *
84852308 CCACAAAGGCTTTATAGGAGACTCGCCATAAAAGCTTTCCAAATAAATAA
1 CCACAAAGGCTTTACAGGTGACTCGCCACAAAAGCTTCCCAAATAAATAA
*
84852358 CCACAAAGGCTTTACAGGTGACTCGCCACAGAAGCTTC
1 CCACAAAGGCTTTACAGGTGACTCGCCACAAAAGCTTC
84852396 ACATAAACTT
Statistics
Matches: 116, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
49 16 0.14
50 100 0.86
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (50 bp):
CCACAAAGGCTTTACAGGTGACTCGCCACAAAAGCTTCCCAAATAAATAA
Found at i:84852369 original size:100 final size:99
Alignment explanation
Indices: 84852209--84852395 Score: 252
Period size: 100 Copynumber: 1.9 Consensus size: 99
84852199 AAGTACCCTG
* * * **
84852209 CCACAAAGGCTTTACAATGACTCGCCACAAAGGTTTCCCAAATAGATCGCCACAAAGGCTTTACA
1 CCACAAAGGCTTTACAATGACTCGCCAAAAAGCTTTCCCAAATAAATAACCACAAAGGCTTTACA
* *
84852274 GGGGACTTGCCACAGAGGCTTCCCAAATAAATTA
66 GGGGACTCGCCACAGAAGCTTCCCAAATAAATTA
*
84852308 CCACAAAGGCTTTATAGGA-GACTCGCCATAAAAGCTTT-CCAAATAAATAACCACAAAGGCTTT
1 CCACAAAGGCTTTACA--ATGACTCGCCA-AAAAGCTTTCCCAAATAAATAACCACAAAGGCTTT
*
84852371 ACAGGTGACTCGCCACAGAAGCTTC
63 ACAGGGGACTCGCCACAGAAGCTTC
84852396 ACATAAACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
99 15 0.20
100 53 0.70
101 8 0.11
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (99 bp):
CCACAAAGGCTTTACAATGACTCGCCAAAAAGCTTTCCCAAATAAATAACCACAAAGGCTTTACA
GGGGACTCGCCACAGAAGCTTCCCAAATAAATTA
Found at i:84852386 original size:25 final size:25
Alignment explanation
Indices: 84852208--84852387 Score: 98
Period size: 25 Copynumber: 7.2 Consensus size: 25
84852198 CAAGTACCCT
84852208 GCCACAAAGGCTTTAC-AATGACTC
1 GCCACAAAGGCTTTACAAATGACTC
*
84852232 GCCACAAAGG-TTTCCCAAATAGA-TC
1 GCCACAAAGGCTTT-ACAAAT-GACTC
*** *
84852257 GCCACAAAGGCTTTACAGGGGACTT
1 GCCACAAAGGCTTTACAAATGACTC
* ** * * *
84852282 GCCACAGAGGCTTCCCAAATAAATT
1 GCCACAAAGGCTTTACAAATGACTC
* * *
84852307 ACCACAAAGGCTTTATAGGA-GACTC
1 GCCACAAAGGCTTTACA-AATGACTC
* * * * * *
84852332 GCCATAAAAGCTTTCCAAATAAATA
1 GCCACAAAGGCTTTACAAATGACTC
* **
84852357 ACCACAAAGGCTTTACAGGTGACTC
1 GCCACAAAGGCTTTACAAATGACTC
84852382 GCCACA
1 GCCACA
84852388 GAAGCTTCAC
Statistics
Matches: 107, Mismatches: 42, Indels: 13
0.66 0.26 0.08
Matches are distributed among these distances:
23 3 0.03
24 14 0.13
25 84 0.79
26 6 0.06
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.20
Consensus pattern (25 bp):
GCCACAAAGGCTTTACAAATGACTC
Found at i:84852589 original size:24 final size:24
Alignment explanation
Indices: 84852542--84852589 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
84852532 CTGGATTTTT
* * * *
84852542 CTCGTGTTTGTTGTCCCGATAGAC
1 CTCGTGTTTATAGTCCCAACAGAC
84852566 CTCGTGTTTATAGTCCCAACAGAC
1 CTCGTGTTTATAGTCCCAACAGAC
84852590 TACATTTCGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (24 bp):
CTCGTGTTTATAGTCCCAACAGAC
Found at i:84864778 original size:20 final size:20
Alignment explanation
Indices: 84864753--84864795 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
84864743 ATCTTAATGT
84864753 TAAATATATATATCATATAA
1 TAAATATATATATCATATAA
84864773 TAAATATATATATCATATAA
1 TAAATATATATATCATATAA
84864793 TAA
1 TAA
84864796 CTTACATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (20 bp):
TAAATATATATATCATATAA
Done.