Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 251 of 362
Found at i:84864808 original size:27 final size:27
Alignment explanation
Indices: 84864778--84864876 Score: 107
Period size: 27 Copynumber: 3.7 Consensus size: 27
84864768 TATAATAAAT
84864778 ATATATATCATATAATAACTTACATAA
1 ATATATATCATATAATAACTTACATAA
* *
84864805 ATATATATCATATCATAACTTACACAA
1 ATATATATCATATAATAACTTACATAA
* *
84864832 CT-TATATACCT-TACATAA--TACATAA
1 ATATATAT-CATATA-ATAACTTACATAA
*
84864857 ATATATATTATATAATAACT
1 ATATATATCATATAATAACT
84864877 GATGTAACTT
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
25 12 0.21
26 13 0.23
27 32 0.56
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.37
Consensus pattern (27 bp):
ATATATATCATATAATAACTTACATAA
Found at i:84864854 original size:52 final size:46
Alignment explanation
Indices: 84864798--84865059 Score: 254
Period size: 43 Copynumber: 5.6 Consensus size: 46
84864788 TATAATAACT
84864798 TACATAAATATATATCATATCATAACTTACACAACTTATATACCTTACATAA
1 TACATAAATATATATCATATCATAACTT----AACTTATA-A-CTTACATAA
* * * *
84864850 TACATAAATATATATTATATAATAACTGATGTAACTTACAAATCTTACAGAA
1 TACATAAATATATATCATATCATAAC---T-TAACTTA-TAA-CTTACATAA
* * * *
84864902 TACATAAGTATATATCATTTAATAACTT-AC--ATAACTCACATAA
1 TACATAAATATATATCATATCATAACTTAACTTATAACTTACATAA
* *
84864945 TACATAAATATATATCATATAATAACTTAA---ATAACTTACAGAA
1 TACATAAATATATATCATATCATAACTTAACTTATAACTTACATAA
*
84864988 TACATAAATATATATCATAGCATAACTT-AC--ATAACTTACATAA
1 TACATAAATATATATCATATCATAACTTAACTTATAACTTACATAA
84865031 TACATAAATATATATCATATCATAACTTA
1 TACATAAATATATATCATATCATAACTTA
84865060 CATACCTTAC
Statistics
Matches: 183, Mismatches: 19, Indels: 24
0.81 0.08 0.11
Matches are distributed among these distances:
42 1 0.01
43 109 0.60
44 3 0.02
45 1 0.01
47 2 0.01
48 1 0.01
49 1 0.01
52 62 0.34
53 1 0.01
55 1 0.01
56 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.34
Consensus pattern (46 bp):
TACATAAATATATATCATATCATAACTTAACTTATAACTTACATAA
Found at i:84864928 original size:43 final size:42
Alignment explanation
Indices: 84864881--84865106 Score: 248
Period size: 43 Copynumber: 5.4 Consensus size: 42
84864871 ATAACTGATG
* *
84864881 TAACTTACAAATCTTACAGAATACATAAGTATATATCATTTAA
1 TAACTTACAAA-CTTACAGAATACATAAATATATATCATATAA
* *
84864924 TAACTTACATAACTCACATAATACATAAATATATATCATATAA
1 TAACTTACA-AACTTACAGAATACATAAATATATATCATATAA
* **
84864967 TAACTTAAATAACTTACAGAATACATAAATATATATCATAGCA
1 TAACTTACA-AACTTACAGAATACATAAATATATATCATATAA
* *
84865010 TAACTTACATAACTTACATAATACATAAATATATATCATATCA
1 TAACTTACA-AACTTACAGAATACATAAATATATATCATATAA
** * *
84865053 TAACTTAC--A--TAC--CTTACATAAATGTATATCATATCA
1 TAACTTACAAACTTACAGAATACATAAATATATATCATATAA
84865089 TAACTTACATAACTTACA
1 TAACTTACA-AACTTACA
84865107 AAACTTACTT
Statistics
Matches: 161, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
36 29 0.18
38 3 0.02
39 1 0.01
40 1 0.01
41 3 0.02
43 122 0.76
44 2 0.01
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (42 bp):
TAACTTACAAACTTACAGAATACATAAATATATATCATATAA
Found at i:84864937 original size:9 final size:9
Alignment explanation
Indices: 84864923--84865123 Score: 84
Period size: 9 Copynumber: 23.0 Consensus size: 9
84864913 ATATCATTTA
84864923 ATAACTTAC
1 ATAACTTAC
*
84864932 ATAACTCAC
1 ATAACTTAC
84864941 ATAA--TAC
1 ATAACTTAC
* *
84864948 ATAA-ATAT
1 ATAACTTAC
*
84864956 ATATCATATA-
1 ATAAC-T-TAC
*
84864966 ATAACTTAA
1 ATAACTTAC
84864975 ATAACTTAC
1 ATAACTTAC
*
84864984 AGAA--TAC
1 ATAACTTAC
* *
84864991 ATAA-ATAT
1 ATAACTTAC
* *
84864999 ATATCATAGC
1 ATAACTTA-C
84865009 ATAACTTAC
1 ATAACTTAC
84865018 ATAACTTAC
1 ATAACTTAC
84865027 ATAA--TAC
1 ATAACTTAC
* *
84865034 ATAA-ATAT
1 ATAACTTAC
* *
84865042 ATATCATATC
1 ATAACTTA-C
84865052 ATAACTTAC
1 ATAACTTAC
*
84865061 ATACCTTAC
1 ATAACTTAC
*
84865070 ATAAATGT--
1 ATAACT-TAC
* *
84865078 ATATCATATC
1 ATAACTTA-C
84865088 ATAACTTAC
1 ATAACTTAC
84865097 ATAACTTAC
1 ATAACTTAC
*
84865106 AAAACTTAC
1 ATAACTTAC
*
84865115 TTAACTTAC
1 ATAACTTAC
84865124 GTAATACATA
Statistics
Matches: 147, Mismatches: 30, Indels: 30
0.71 0.14 0.14
Matches are distributed among these distances:
7 20 0.14
8 20 0.14
9 82 0.56
10 23 0.16
11 2 0.01
ACGTcount: A:0.48, C:0.17, G:0.01, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:84865028 original size:36 final size:36
Alignment explanation
Indices: 84864975--84865106 Score: 151
Period size: 36 Copynumber: 3.5 Consensus size: 36
84864965 AATAACTTAA
* *
84864975 ATAACTTACAGAA--TACATAAATATATATCATAGC
1 ATAACTTACATAACTTACATAAATATATATCATATC
84865009 ATAACTTACATAACTTACATAATACATAAATATATATCATATC
1 ATAACTTACAT-A---AC-T--TACATAAATATATATCATATC
* *
84865052 ATAACTTACATACCTTACATAAATGTATATCATATC
1 ATAACTTACATAACTTACATAAATATATATCATATC
84865088 ATAACTTACATAACTTACA
1 ATAACTTACATAACTTACA
84865107 AAACTTACTT
Statistics
Matches: 84, Mismatches: 5, Indels: 16
0.80 0.05 0.15
Matches are distributed among these distances:
34 10 0.12
35 1 0.01
36 38 0.45
38 2 0.02
39 1 0.01
42 1 0.01
43 31 0.37
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.33
Consensus pattern (36 bp):
ATAACTTACATAACTTACATAAATATATATCATATC
Found at i:84865058 original size:86 final size:85
Alignment explanation
Indices: 84864889--84865106 Score: 297
Period size: 86 Copynumber: 2.6 Consensus size: 85
84864879 TGTAACTTAC
* * * *
84864889 AAAT-CTTACAGAATACATAAGTATATATCATTTAATAACTTACATAACTCACATAATACATAAA
1 AAATACTTACAGAATACATAAATATATATCATATCATAACTTACATAACTTACATAATACATAAA
84864953 TATATATCATATAATAACTT
66 TATATATCATATAATAACTT
*
84864973 AAATAACTTACAGAATACATAAATATATATCATAGCATAACTTACATAACTTACATAATACATAA
1 AAAT-ACTTACAGAATACATAAATATATATCATATCATAACTTACATAACTTACATAATACATAA
*
84865038 ATATATATCATATCATAACTT
65 ATATATATCATATAATAACTT
* * *
84865059 ACATAC---C---TTACATAAATGTATATCATATCATAACTTACATAACTTACA
1 AAATACTTACAGAATACATAAATATATATCATATCATAACTTACATAACTTACA
84865107 AAACTTACTT
Statistics
Matches: 122, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
79 38 0.31
82 1 0.01
84 4 0.03
85 2 0.02
86 77 0.63
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.33
Consensus pattern (85 bp):
AAATACTTACAGAATACATAAATATATATCATATCATAACTTACATAACTTACATAATACATAAA
TATATATCATATAATAACTT
Found at i:84868577 original size:26 final size:26
Alignment explanation
Indices: 84868546--84868653 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
84868536 TGAAATGCCC
84868546 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
84868572 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
84868598 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAAACCATT
84868624 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
84868650 ATCA
1 ATCA
84868654 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
25 2 0.03
26 72 0.97
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:84869953 original size:12 final size:12
Alignment explanation
Indices: 84869936--84869961 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84869926 AAGATCGAGG
84869936 GATGAATCTGAT
1 GATGAATCTGAT
84869948 GATGAATCTGAT
1 GATGAATCTGAT
84869960 GA
1 GA
84869962 AGAGGATGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:84873531 original size:16 final size:16
Alignment explanation
Indices: 84873510--84873541 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
84873500 TAGTAAAAAT
84873510 AAAAATAACATAATAA
1 AAAAATAACATAATAA
*
84873526 AAAAATAAGATAATAA
1 AAAAATAACATAATAA
84873542 TAATAGCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAAATAACATAATAA
Found at i:84873541 original size:3 final size:3
Alignment explanation
Indices: 84873468--84873565 Score: 55
Period size: 3 Copynumber: 34.7 Consensus size: 3
84873458 GATAATATGC
* * * * * *
84873468 TAA TAA T-A TAA TAG TAA TGA TAA TAG TAA TAA TAG TAA AAA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
84873515 TAA -CA TAA TAA -AA AAA TAA -GA TAA TAA TAA TAG CAA TAA -AA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
84873558 TAA TAA TA
1 TAA TAA TA
84873566 GTGATATTAG
Statistics
Matches: 69, Mismatches: 21, Indels: 10
0.69 0.21 0.10
Matches are distributed among these distances:
2 10 0.14
3 59 0.86
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:84875608 original size:42 final size:42
Alignment explanation
Indices: 84875550--84875636 Score: 120
Period size: 42 Copynumber: 2.1 Consensus size: 42
84875540 AGACACGTGA
* *
84875550 CTTCAATCAATTCCACTGAAACATCAAGGAGATTTGCTGTAG
1 CTTCAATCAATTCCACTGAAACATCAAAGAGATCTGCTGTAG
* * * *
84875592 CTTCGATCAATTCCACTGAAACTTTAAAGAGATCTGCTGTGG
1 CTTCAATCAATTCCACTGAAACATCAAAGAGATCTGCTGTAG
84875634 CTT
1 CTT
84875637 TTAGCTGCTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (42 bp):
CTTCAATCAATTCCACTGAAACATCAAAGAGATCTGCTGTAG
Found at i:84875818 original size:43 final size:43
Alignment explanation
Indices: 84875733--84875877 Score: 157
Period size: 43 Copynumber: 3.4 Consensus size: 43
84875723 TGATCTATTT
* * *
84875733 CCCTACTGCTTAGGGGTTT-AGATCTGTAAACTCAACCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGCTTGTTA
* * **
84875775 CCCTACTGCTTAGGGGTTTAAGGTTTGTAAATTTGGCTTGTTA
1 CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGCTTGTTA
* *** * *
84875818 CCCTATTGCTTAGGGCAATAATATCTATAAACTTCAGCTTGTTA
1 CCCTACTGCTTAGGGGTTTAAGATCTGTAAA-TTCAGCTTGTTA
84875862 CCCTACTGCTTAGGGG
1 CCCTACTGCTTAGGGG
84875878 GTAAAGCTTG
Statistics
Matches: 82, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 19 0.23
43 39 0.48
44 24 0.29
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGCTTGTTA
Found at i:84875822 original size:85 final size:87
Alignment explanation
Indices: 84875678--84875887 Score: 218
Period size: 85 Copynumber: 2.4 Consensus size: 87
84875668 ATATTTGATT
* *
84875678 TTCAACCTGTTACCCTACTGC-TAGGGGGTTAAGGCTTGTCATCATTGATCTATTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAT-ATTGAGCTATTTCCCTACTGC
** * *
84875742 TTAGGG-GTTTAGATCTGTAAAC
65 TTAGGGCAATAAGATCTATAAAC
* * *
84875764 -TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGTAA-ATTTG-GCT-TGTTACCCTATT
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAATA-TTGAGCTAT-TT-CCCTACT
*
84875825 GCTTAGGGCAATAATATCTATAAAC
63 GCTTAGGGCAATAAGATCTATAAAC
* * *
84875850 TTCAGCTTGTTACCCTACTGCTTAGGGGG-TAAAGCTTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTG
84875888 GTGGTTTGAA
Statistics
Matches: 103, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
83 1 0.01
84 5 0.05
85 37 0.36
86 35 0.34
87 25 0.24
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.36
Consensus pattern (87 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAATATTGAGCTATTTCCCTACTGCT
TAGGGCAATAAGATCTATAAAC
Found at i:84876228 original size:43 final size:44
Alignment explanation
Indices: 84876161--84876258 Score: 117
Period size: 43 Copynumber: 2.2 Consensus size: 44
84876151 TACATTTAGC
* * * *
84876161 CTGCTCCACTGTGACTTCAAGGAGATGAGACTTGTAACTTCAGT
1 CTGCTCCACTGTCACTTCAAGGAGATAAGACTAGTAACTTCAAT
* * *
84876205 CTGCTCCACTG-CACTTCAGGGAGATAAGGCTAGTGACTTCAAT
1 CTGCTCCACTGTCACTTCAAGGAGATAAGACTAGTAACTTCAAT
*
84876248 CTGCTTCACTG
1 CTGCTCCACTG
84876259 AGGTTTCAGG
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
43 35 0.76
44 11 0.24
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (44 bp):
CTGCTCCACTGTCACTTCAAGGAGATAAGACTAGTAACTTCAAT
Found at i:84877314 original size:45 final size:45
Alignment explanation
Indices: 84877250--84877340 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
84877240 GTCCGAATTC
84877250 ATGGGATTGGATAAGGTCTTGCCATCCATTTCATCCAATATCAAT
1 ATGGGATTGGATAAGGTCTTGCCATCCATTTCATCCAATATCAAT
*
84877295 ATGGGATTGGGTAAGGTCTTGCCATCCATTTCATCCAATATCAAT
1 ATGGGATTGGATAAGGTCTTGCCATCCATTTCATCCAATATCAAT
84877340 A
1 A
84877341 CTCCTCCAGA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (45 bp):
ATGGGATTGGATAAGGTCTTGCCATCCATTTCATCCAATATCAAT
Found at i:84884453 original size:9 final size:9
Alignment explanation
Indices: 84884439--84884463 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
84884429 ATGCGGATGC
84884439 ATGAATGTA
1 ATGAATGTA
84884448 ATGAATGTA
1 ATGAATGTA
84884457 ATGAATG
1 ATGAATG
84884464 CAAAAAAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (9 bp):
ATGAATGTA
Found at i:84888456 original size:16 final size:16
Alignment explanation
Indices: 84888435--84888466 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
84888425 TAGTAAAAAT
84888435 AAAAATAACATAATAA
1 AAAAATAACATAATAA
*
84888451 AAAAATAAGATAATAA
1 AAAAATAACATAATAA
84888467 TAATAGCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAAATAACATAATAA
Found at i:84888466 original size:3 final size:3
Alignment explanation
Indices: 84888393--84888490 Score: 55
Period size: 3 Copynumber: 34.7 Consensus size: 3
84888383 GATAATATGC
* * * * * *
84888393 TAA TAA T-A TAA TAG TAA TGA TAA TAG TAA TAA TAG TAA AAA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
84888440 TAA -CA TAA TAA -AA AAA TAA -GA TAA TAA TAA TAG CAA TAA -AA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
84888483 TAA TAA TA
1 TAA TAA TA
84888491 GTGATATTAG
Statistics
Matches: 69, Mismatches: 21, Indels: 10
0.69 0.21 0.10
Matches are distributed among these distances:
2 10 0.14
3 59 0.86
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:84889214 original size:27 final size:26
Alignment explanation
Indices: 84889134--84889235 Score: 152
Period size: 26 Copynumber: 3.9 Consensus size: 26
84889124 TTGATAAAAT
* *
84889134 GTTAGGTAAATGTTCCATGATAATAG
1 GTTAGGTAAATGTTTCATGATAATGG
84889160 GTTAGGTAAATG-TTCTATGATAATGG
1 GTTAGGTAAATGTTTC-ATGATAATGG
*
84889186 GTTAGGTAAATGTTTTGATGATAATGG
1 GTTAGGTAAATG-TTTCATGATAATGG
84889213 GTTAGGTAAATGTTTCATGATAA
1 GTTAGGTAAATGTTTCATGATAA
84889236 GAATTTCATG
Statistics
Matches: 69, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
25 2 0.03
26 43 0.62
27 22 0.32
28 2 0.03
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.38
Consensus pattern (26 bp):
GTTAGGTAAATGTTTCATGATAATGG
Found at i:84889223 original size:53 final size:52
Alignment explanation
Indices: 84889134--84889235 Score: 152
Period size: 53 Copynumber: 1.9 Consensus size: 52
84889124 TTGATAAAAT
84889134 GTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATG-TTCTATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTTC-ATGATAATGG
** *
84889186 GTTAGGTAAATGTTTTGATGATAATGGGTTAGGTAAATGTTTCATGATAA
1 GTTAGGTAAATG-TTCCATGATAATAGGTTAGGTAAATGTTTCATGATAA
84889236 GAATTTCATG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
52 12 0.27
53 30 0.67
54 3 0.07
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.38
Consensus pattern (52 bp):
GTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTTCATGATAATGG
Found at i:84890744 original size:25 final size:26
Alignment explanation
Indices: 84890716--84890767 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
84890706 TTTACAGTTT
84890716 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
84890741 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
84890767 T
1 T
84890768 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:84894897 original size:26 final size:26
Alignment explanation
Indices: 84894861--84894970 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
84894851 TGATACAAAT
*
84894861 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
84894887 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
84894913 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
84894939 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
84894965 TGATAA
1 TGATAA
84894971 GAATTCCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:84899948 original size:13 final size:14
Alignment explanation
Indices: 84899932--84899960 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
84899922 TTTTAAATAT
84899932 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
84899945 TTATAATGGTTTAA
1 TTATAATGGTTTAA
84899959 TT
1 TT
84899961 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:84901806 original size:27 final size:27
Alignment explanation
Indices: 84901775--84901952 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
84901765 TAAATTGTAC
84901775 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
84901802 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
84901828 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
84901856 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
84901884 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
84901911 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
84901938 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84901953 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:84901889 original size:82 final size:81
Alignment explanation
Indices: 84901776--84901931 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
84901766 AAATTGTACA
* *
84901776 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
84901840 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
84901857 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
84901922 TGCGAGTTGA
65 TGCGAATTGA
84901932 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84901943 original size:82 final size:81
Alignment explanation
Indices: 84901772--84901952 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
84901762 GATTAAATTG
* *
84901772 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
84901837 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
84901853 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
84901917 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
84901935 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
84901953 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84903525 original size:21 final size:21
Alignment explanation
Indices: 84903499--84903538 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
84903489 AAATTGCTCA
*
84903499 ACTTAAAGCGGAGGCAGCATC
1 ACTTAAAGAGGAGGCAGCATC
84903520 ACTTAAAGAGGAGGCAGCA
1 ACTTAAAGAGGAGGCAGCA
84903539 GCGAGGGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.20, G:0.30, T:0.12
Consensus pattern (21 bp):
ACTTAAAGAGGAGGCAGCATC
Found at i:84903816 original size:47 final size:47
Alignment explanation
Indices: 84903741--84903834 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
84903731 CGTTGAATTT
* *
84903741 TTGAAGTATCATTTAGATTTGTTGTTATTGGTTGGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTTGCTATTATTGGTTGGATTTGATGTTGC
*
84903788 TTGAAGTATCATTTAGGTTTGCTATTATTGGTTGGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTTGCTATTATTGGTTGGATTTGATGTTGC
84903835 AGGAAGGATT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.19, C:0.05, G:0.26, T:0.50
Consensus pattern (47 bp):
TTGAAGTATCATTTAGATTTGCTATTATTGGTTGGATTTGATGTTGC
Found at i:84904014 original size:40 final size:41
Alignment explanation
Indices: 84903967--84904067 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 41
84903957 TAAAGATCAC
*
84903967 TTCTTTAGCGGC-TTTTTTGAAAGTGCCACTAAAAGTCAAG
1 TTCTTTAGCGGCATTTTTTGAAAGCGCCACTAAAAGTCAAG
* *** *
84904007 TTCTTTAGCGGCGTTTTTCTGAAAGCGTTGCTAAAAGTCATG
1 TTCTTTAGCGGCATTTTT-TGAAAGCGCCACTAAAAGTCAAG
*
84904049 TTCTTTAGCGACATTTTTT
1 TTCTTTAGCGGCATTTTTT
84904068 TACATGAATG
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 12 0.23
41 6 0.12
42 34 0.65
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.41
Consensus pattern (41 bp):
TTCTTTAGCGGCATTTTTTGAAAGCGCCACTAAAAGTCAAG
Found at i:84917814 original size:22 final size:23
Alignment explanation
Indices: 84917788--84917837 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 23
84917778 AGGTGATTTG
* * *
84917788 TGAAT-GTGAAATTGGTATGTTT
1 TGAATAGTAAAATTGGGATGTTA
84917810 TGAATAGGTAAAATTGGGATGTTA
1 TGAATA-GTAAAATTGGGATGTTA
84917834 TGAA
1 TGAA
84917838 CATTATAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 5 0.22
24 18 0.78
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38
Consensus pattern (23 bp):
TGAATAGTAAAATTGGGATGTTA
Found at i:84918173 original size:12 final size:12
Alignment explanation
Indices: 84918156--84918181 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84918146 GTTTTGGCAT
84918156 GGCCTAGCACAC
1 GGCCTAGCACAC
84918168 GGCCTAGCACAC
1 GGCCTAGCACAC
84918180 GG
1 GG
84918182 GCATGTGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:84919414 original size:20 final size:19
Alignment explanation
Indices: 84919384--84919424 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
84919374 AAAGTAGTGG
84919384 AAATTTATTTTCTTAGAAT
1 AAATTTATTTTCTTAGAAT
* *
84919403 AAATTCTATTTTTTTGGAAT
1 AAATT-TATTTTCTTAGAAT
84919423 AA
1 AA
84919425 TAATTTCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (19 bp):
AAATTTATTTTCTTAGAAT
Found at i:84920469 original size:24 final size:24
Alignment explanation
Indices: 84920442--84920506 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
84920432 CAGTCACAGT
*
84920442 ATTGCACAGAAGTGCCACATTTT-G
1 ATTGCACAGAAGTGCCAC-TTTTCA
84920466 ATTGCACTA-AAGTGCCACTTTTCA
1 ATTGCAC-AGAAGTGCCACTTTTCA
* *
84920490 AGTGCACCGAAGTGCCA
1 ATTGCACAGAAGTGCCA
84920507 TATTCATTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
23 4 0.11
24 30 0.86
25 1 0.03
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (24 bp):
ATTGCACAGAAGTGCCACTTTTCA
Found at i:84921069 original size:5 final size:5
Alignment explanation
Indices: 84921059--84921085 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
84921049 CTAGATAAAC
84921059 ATTAA ATTAA ATTAA ATTAA ATTAA AT
1 ATTAA ATTAA ATTAA ATTAA ATTAA AT
84921086 ATCTGATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:84921168 original size:18 final size:18
Alignment explanation
Indices: 84921117--84921171 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
84921107 AATAAAATAC
*
84921117 TATCTATATAAATATTTAA
1 TATCTAAATAAATA-TTAA
*
84921136 T-T-TAATATCACATATTAA
1 TATCTAA-AT-AAATATTAA
84921154 TATCTAAATAAATATTAA
1 TATCTAAATAAATATTAA
84921172 ATTCATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
17 2 0.07
18 16 0.55
19 8 0.28
20 3 0.10
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (18 bp):
TATCTAAATAAATATTAA
Found at i:84921188 original size:32 final size:31
Alignment explanation
Indices: 84921097--84921189 Score: 78
Period size: 37 Copynumber: 2.8 Consensus size: 31
84921087 TCTGATATTC
* * *
84921097 ATATTAAATTAATAAAATACTATCTATATAA
1 ATATTAAATTATTAAAATAATATCTAAATAA
* *
84921128 ATATTTAATTTAATATCACATATTAATATCTAAATAA
1 ATA-TTAAATT-AT-T-A-A-AATAATATCTAAATAA
84921165 ATATTAAATTCATTAAAATAATATC
1 ATATTAAATT-ATTAAAATAATATC
84921190 CTTTTTGGAA
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
31 3 0.06
32 14 0.29
33 2 0.04
34 2 0.04
35 2 0.04
36 9 0.19
37 16 0.33
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.41
Consensus pattern (31 bp):
ATATTAAATTATTAAAATAATATCTAAATAA
Found at i:84923196 original size:20 final size:20
Alignment explanation
Indices: 84923166--84923233 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 20
84923156 AATTTTGCAC
84923166 TTAATATTAAC-ATATTCATAA
1 TTAA-ATTAACTA-ATTCATAA
84923187 TTAAATTAACTAATT--TAA
1 TTAAATTAACTAATTCATAA
84923205 TATAAATTATACCTAATTCATAA
1 T-TAAATTA-A-CTAATTCATAA
84923228 TTAAAT
1 TTAAAT
84923234 AAAATTAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
18 4 0.10
19 7 0.17
20 10 0.24
21 11 0.27
22 5 0.12
23 4 0.10
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (20 bp):
TTAAATTAACTAATTCATAA
Found at i:84923222 original size:21 final size:18
Alignment explanation
Indices: 84923184--84923233 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 18
84923174 AACATATTCA
84923184 TAATTAAATTAACTAATT
1 TAATTAAATTAACTAATT
84923202 TAATATAAATTATACCTAATT
1 TAAT-TAAATTA-A-CTAATT
84923223 CATAATTAAAT
1 --TAATTAAAT
84923234 AAAATTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.15
19 7 0.26
20 1 0.04
21 6 0.22
22 5 0.19
23 4 0.15
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATTAAATTAACTAATT
Found at i:84929907 original size:20 final size:20
Alignment explanation
Indices: 84929884--84929931 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
84929874 TTCCACTTCA
* *
84929884 GTGCCCCTATTTGCACTTTG
1 GTGCCCCTATATACACTTTG
* *
84929904 GTGCCTCTGTATACACTTTG
1 GTGCCCCTATATACACTTTG
*
84929924 GTGTCCCT
1 GTGCCCCT
84929932 GGTGCCCTTG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.10, C:0.29, G:0.21, T:0.40
Consensus pattern (20 bp):
GTGCCCCTATATACACTTTG
Found at i:84929981 original size:49 final size:49
Alignment explanation
Indices: 84929884--84929981 Score: 108
Period size: 49 Copynumber: 2.0 Consensus size: 49
84929874 TTCCACTTCA
* *** *
84929884 GTGCCCCTATTTGCACTTTGGTGCCTCTGTATACACTTTGGTGTCCCTG
1 GTGCCCCTATTTGCACTTTGGTGCCCCTGTATACACTTCAATGCCCCTG
* * *
84929933 GTGCCCTTGTTTGCACATTT-GTGCCCCTGTCTACACTTCAATGCCCCTG
1 GTGCCCCTATTTGCAC-TTTGGTGCCCCTGTATACACTTCAATGCCCCTG
84929982 TTATGCATCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
49 37 0.93
50 3 0.08
ACGTcount: A:0.11, C:0.32, G:0.20, T:0.37
Consensus pattern (49 bp):
GTGCCCCTATTTGCACTTTGGTGCCCCTGTATACACTTCAATGCCCCTG
Found at i:84931533 original size:19 final size:19
Alignment explanation
Indices: 84931497--84931535 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
84931487 TTTTCATCAT
* *
84931497 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
84931516 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
84931535 A
1 A
84931536 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:84932035 original size:28 final size:28
Alignment explanation
Indices: 84931987--84932077 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
84931977 GTGACAGAGT
*
84931987 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
84932016 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
*
84932044 CGCCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
84932072 CACCAG
1 CACCAG
84932078 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
28 49 0.88
29 7 0.12
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:84932230 original size:28 final size:28
Alignment explanation
Indices: 84932183--84932247 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
84932173 AAATTAACCC
* *
84932183 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGATAATTTTGCATACA
* *
84932211 TAGGGGTATAATGATAATTTTGCATATA
1 TAGGGGTATAAAGATAATTTTGCATACA
84932239 TAGGGGTAT
1 TAGGGGTAT
84932248 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAAAGATAATTTTGCATACA
Found at i:84936499 original size:40 final size:40
Alignment explanation
Indices: 84936448--84936652 Score: 313
Period size: 40 Copynumber: 5.1 Consensus size: 40
84936438 AGATGATAAT
* *
84936448 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
84936487 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
84936528 TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* **
84936568 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* **
84936608 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
84936648 TCCGG
1 TCCGG
84936653 TTAAAGCCCG
Statistics
Matches: 151, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 150 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:84942640 original size:19 final size:19
Alignment explanation
Indices: 84942604--84942642 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
84942594 TTTTCATCAT
* *
84942604 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
84942623 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
84942642 A
1 A
84942643 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:84943154 original size:28 final size:28
Alignment explanation
Indices: 84943105--84943195 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 28
84943095 GTGACAGAGT
*
84943105 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
* * *
84943134 CACCAGAGCAGATAATTTGTGCCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
*
84943162 CACCAGAACAGATAACTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
84943190 CACCAG
1 CACCAG
84943196 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
28 46 0.87
29 7 0.13
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:84943348 original size:28 final size:28
Alignment explanation
Indices: 84943301--84943365 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
84943291 AAATTAACCC
*
84943301 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
84943329 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
84943357 TAGCGGTAT
1 TAGGGGTAT
84943366 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:84947022 original size:16 final size:17
Alignment explanation
Indices: 84947003--84947035 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
84946993 ATGATAATAC
*
84947003 ATGAAAT-ATTGATATA
1 ATGAAATGAGTGATATA
84947019 ATGAAATGAGTGATATA
1 ATGAAATGAGTGATATA
84947036 TGTTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (17 bp):
ATGAAATGAGTGATATA
Found at i:84949603 original size:85 final size:86
Alignment explanation
Indices: 84949514--84949670 Score: 228
Period size: 85 Copynumber: 1.8 Consensus size: 86
84949504 ATCAAATATA
* * *
84949514 GATGCCATTGTCCCAGACAGGGTCTTACACGAAATCAT-A-TACGATGCCAATGTCCCATACATG
1 GATGCCAATGTCCAAGACAGGGTCTTACACGAAATC-TCAGTACGATGCCAATGTCCCAGACATG
84949577 GTCTTACATGTAATCTCAGTTT
65 GTCTTACATGTAATCTCAGTTT
* * **
84949599 GATGCCAATGTCCAAGACATGGTCTTACACGTAATCTCAGTTTGATGCCAATGTCCCAGACATGG
1 GATGCCAATGTCCAAGACAGGGTCTTACACGAAATCTCAGTACGATGCCAATGTCCCAGACATGG
84949664 TCTTACA
66 TCTTACA
84949671 CGAAATCAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
84 1 0.02
85 33 0.52
86 29 0.46
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (86 bp):
GATGCCAATGTCCAAGACAGGGTCTTACACGAAATCTCAGTACGATGCCAATGTCCCAGACATGG
TCTTACATGTAATCTCAGTTT
Found at i:84949619 original size:43 final size:43
Alignment explanation
Indices: 84949514--84949677 Score: 224
Period size: 43 Copynumber: 3.8 Consensus size: 43
84949504 ATCAAATATA
* * * **
84949514 GATGCCATTGTCCCAGACAGGGTCTTACACGAAATCAT-A-TAC
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATC-TCAGTTT
* *
84949556 GATGCCAATGTCCCATACATGGTCTTACATGTAATCTCAGTTT
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAGTTT
*
84949599 GATGCCAATGTCCAAGACATGGTCTTACACGTAATCTCAGTTT
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAGTTT
*
84949642 GATGCCAATGTCCCAGACATGGTCTTACACGAAATC
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATC
84949678 AAATCTCGGA
Statistics
Matches: 108, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
41 1 0.01
42 32 0.30
43 75 0.69
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAGTTT
Found at i:84955722 original size:16 final size:17
Alignment explanation
Indices: 84955703--84955740 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
84955693 GAATTTGACA
*
84955703 TTTGGCAAACTCT-AGG
1 TTTGGCAAACCCTAAGG
84955719 TTTGGCAAACCCTAAGG
1 TTTGGCAAACCCTAAGG
84955736 TTTGG
1 TTTGG
84955741 TGGGCTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (17 bp):
TTTGGCAAACCCTAAGG
Found at i:84956070 original size:29 final size:29
Alignment explanation
Indices: 84956028--84956091 Score: 128
Period size: 29 Copynumber: 2.2 Consensus size: 29
84956018 CATGTTTGTA
84956028 CATTTTGTTTATGTTTCTTTTTTTCCTTT
1 CATTTTGTTTATGTTTCTTTTTTTCCTTT
84956057 CATTTTGTTTATGTTTCTTTTTTTCCTTT
1 CATTTTGTTTATGTTTCTTTTTTTCCTTT
84956086 CATTTT
1 CATTTT
84956092 CACTGAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.08, C:0.14, G:0.06, T:0.72
Consensus pattern (29 bp):
CATTTTGTTTATGTTTCTTTTTTTCCTTT
Found at i:84959444 original size:39 final size:40
Alignment explanation
Indices: 84959342--84959526 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
84959332 TTGAATGATG
* * *
84959342 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
84959381 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
84959422 TCCGGGCTAAG-CGCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
84959461 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
84959500 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
84959527 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:84959548 original size:79 final size:79
Alignment explanation
Indices: 84959395--84959559 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
84959385 GGACTAAGAT
* * **
84959395 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCGCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
84959460 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATC
* *
84959474 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
84959537 TATATCC-GGTTAAATT
63 TAAATCCAGGTTAAATC
84959553 CCGAAGG
1 CCGAAGG
84959560 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCAGGTTAAATC
Found at i:84963317 original size:43 final size:43
Alignment explanation
Indices: 84963192--84963355 Score: 140
Period size: 43 Copynumber: 3.8 Consensus size: 43
84963182 CAAAAAGCTC
** * * *
84963192 GTACAATGTGAACATCCCAGACGTGGTCTTGCATGT-AATCAA
1 GTACAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAA
* * *
84963234 ATATCAATGCC-ACTGTTCCAGATAG-GGTCTTACACG-AAATCAA
1 GTA-CAATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAAATCAA
84963277 GTACAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAA
1 GTACAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATC--AA
* * * *
84963322 GT-CGATGCCAACTTCCTAGACGTGGCCTTACACG
1 GTACAATGCCAACGTCCCAGACGTGGTCTTACACG
84963356 ATGACACATA
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 1 0.01
42 29 0.30
43 35 0.36
44 29 0.30
45 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
GTACAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAA
Found at i:84972558 original size:46 final size:46
Alignment explanation
Indices: 84972508--84972683 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
84972498 TGGTTGAGCA
84972508 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
84972554 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
84972601 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATTGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
84972647 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84972684 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 67 0.62
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84972664 original size:93 final size:93
Alignment explanation
Indices: 84972505--84972675 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
84972495 GGATGGTTGA
* *
84972505 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCGTTGAGT
84972570 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
84972598 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATTGATACGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCGTTGAGT
84972663 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84972676 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:84976668 original size:42 final size:42
Alignment explanation
Indices: 84976555--84976670 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 42
84976545 TGAAAAGCTT
* * * **
84976555 GTACAATGCCAACATTCCAGACGTGGTCTTACATGAAATCAA
1 GTACAATGCCAACGTCCCAGACATGGTCTTACACAAAATCAA
* * * * *
84976597 ATATCGATGCC-ACTGTCTCAAACAGGGTCTTACACAAAATCAA
1 GTA-CAATGCCAAC-GTCCCAGACATGGTCTTACACAAAATCAA
84976640 GTACAATGCCAACGTCCCAGACATGGTCTTA
1 GTACAATGCCAACGTCCCAGACATGGTCTTA
84976671 TAAGTAAATC
Statistics
Matches: 56, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
42 25 0.45
43 31 0.55
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.23
Consensus pattern (42 bp):
GTACAATGCCAACGTCCCAGACATGGTCTTACACAAAATCAA
Found at i:84978799 original size:21 final size:21
Alignment explanation
Indices: 84978774--84978815 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
84978764 AAAAAGAGAA
84978774 TAATTAGCCAAAATTGTAATT
1 TAATTAGCCAAAATTGTAATT
*
84978795 TAATTAGCCGAAATTGTAATT
1 TAATTAGCCAAAATTGTAATT
84978816 GAGGTAAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (21 bp):
TAATTAGCCAAAATTGTAATT
Found at i:84979262 original size:46 final size:44
Alignment explanation
Indices: 84979195--84979315 Score: 136
Period size: 46 Copynumber: 2.7 Consensus size: 44
84979185 TGTGTACCAA
* **
84979195 TGTAAGACATGTCTGGGACATGCATTGGCCT-CGAGATGTAAGCCAG
1 TGTAAAACATGTCTGGGACATGCATCAG-CTACGAGATGT--GCCAG
* *
84979241 TGTAAAACATGTCTAGGACATGCATCAGCTACGAGATGTGTCAG
1 TGTAAAACATGTCTGGGACATGCATCAGCTACGAGATGTGCCAG
*
84979285 TGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGTAA-AACATGTCTGGGACAT-GCATCAGC
84979316 ATGGATATAT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 9 0.14
45 16 0.25
46 40 0.62
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (44 bp):
TGTAAAACATGTCTGGGACATGCATCAGCTACGAGATGTGCCAG
Found at i:84984255 original size:41 final size:41
Alignment explanation
Indices: 84984182--84984278 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 41
84984172 ATAATAATTC
**
84984182 CGCACACTTAGTGCTTTCTCAATTAACCGAAGCTA-TCTTGGTAT
1 CGCACACTTAGTG--TTCTCAATTAACCGAAGCTAGT-TT-AAAT
*
84984226 CGCACACTTAGTG-TCTC-ATATAGCCGAAGCTAGTTTAAAT
1 CGCACACTTAGTGTTCTCAAT-TAACCGAAGCTAGTTTAAAT
84984266 CGCACACTTAGTG
1 CGCACACTTAGTG
84984279 CCAAATACCA
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
40 17 0.35
41 17 0.35
42 1 0.02
44 13 0.27
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.31
Consensus pattern (41 bp):
CGCACACTTAGTGTTCTCAATTAACCGAAGCTAGTTTAAAT
Found at i:84991125 original size:18 final size:17
Alignment explanation
Indices: 84991082--84991126 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
84991072 AATGTTTTTC
84991082 TATAAAAACAAAGGTTT
1 TATAAAAACAAAGGTTT
*
84991099 TATACAAACAAAGGTTTT
1 TATAAAAACAAAGG-TTT
*
84991117 TCTAAAAACA
1 TATAAAAACA
84991127 CGACTGTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29
Consensus pattern (17 bp):
TATAAAAACAAAGGTTT
Found at i:84996711 original size:19 final size:19
Alignment explanation
Indices: 84996671--84996712 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
84996661 TTATTCTCTT
*
84996671 TCTTTTTTTGAATTTTTGC
1 TCTTTTTTTGAAGTTTTGC
*
84996690 TCTTTATTTTGACGTTTT-C
1 TCTTT-TTTTGAAGTTTTGC
84996709 TCTT
1 TCTT
84996713 CCTCTCCCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.10, C:0.14, G:0.10, T:0.67
Consensus pattern (19 bp):
TCTTTTTTTGAAGTTTTGC
Found at i:84998294 original size:18 final size:18
Alignment explanation
Indices: 84998253--84998295 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
84998243 TGTTTTTCTT
*
84998253 TAAAAACAACGGTTTTAC
1 TAAAAACAAAGGTTTTAC
* *
84998271 T-CAAACAAAGGTTTTTC
1 TAAAAACAAAGGTTTTAC
84998288 TAAAAACA
1 TAAAAACA
84998296 CAACTGTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (18 bp):
TAAAAACAAAGGTTTTAC
Found at i:85004215 original size:33 final size:35
Alignment explanation
Indices: 85004120--85004216 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
85004110 TTAATATTTT
*
85004120 AATATATGAAATATAAATTTTAAATATTT--TTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATTAAGC
* *
85004155 AATAAATATTAATTAT-TTATAAA-ATTTAATT-AG-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAGC
85004188 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
85004217 ATATAACCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.25
34 8 0.16
35 7 0.14
36 3 0.06
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (35 bp):
AATATATAAATTATATTTTAAATATTTAATTAAGC
Found at i:85004631 original size:14 final size:13
Alignment explanation
Indices: 85004612--85004649 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
85004602 ATTTAATGTT
85004612 TAATTATATTAGGA
1 TAATTAT-TTAGGA
*
85004626 TAATTATTAAGGA
1 TAATTATTTAGGA
85004639 TAATTATTTAG
1 TAATTATTTAG
85004650 ATTTAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAATTATTTAGGA
Found at i:85004678 original size:10 final size:10
Alignment explanation
Indices: 85004663--85004714 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
85004653 TAAATTTAGG
85004663 ATTTATTTTT
1 ATTTATTTTT
*
85004673 ATTTATCTTT
1 ATTTATTTTT
* *
85004683 AATTATCTTT
1 ATTTATTTTT
*
85004693 ATTTATTTGT
1 ATTTATTTTT
85004703 ATTTATCTTTT
1 ATTTAT-TTTT
85004714 A
1 A
85004715 GAATTTAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:85010302 original size:16 final size:16
Alignment explanation
Indices: 85010271--85010330 Score: 59
Period size: 16 Copynumber: 3.6 Consensus size: 16
85010261 GCAACCTAAT
* *
85010271 TTTTTATTTCTCTTTA
1 TTTTTATTTTTATTTA
85010287 TTTTTATTTTTATTTA
1 TTTTTATTTTTATTTA
*
85010303 TTATTT-TATTTTAATTA
1 TT-TTTAT-TTTTATTTA
85010320 TTTATTATTTT
1 TTT-TTATTTT
85010331 ATCTTAATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
16 18 0.49
17 18 0.49
18 1 0.03
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTATTTTTATTTA
Found at i:85010309 original size:18 final size:19
Alignment explanation
Indices: 85010288--85010332 Score: 65
Period size: 21 Copynumber: 2.3 Consensus size: 19
85010278 TTCTCTTTAT
85010288 TTTTATTT-TTATTTATTA
1 TTTTATTTATTATTTATTA
85010306 TTTTATTTTAATTATTTATTA
1 TTTTA-TTT-ATTATTTATTA
85010327 TTTTAT
1 TTTTAT
85010333 CTTAATTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.21
19 3 0.12
20 1 0.04
21 15 0.62
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTATTTATTATTTATTA
Found at i:85010321 original size:14 final size:12
Alignment explanation
Indices: 85010283--85010356 Score: 57
Period size: 12 Copynumber: 6.2 Consensus size: 12
85010273 TTTATTTCTC
85010283 TTTATTT-TTATT
1 TTTATTTATTA-T
85010295 TTTATTTATTAT
1 TTTATTTATTAT
85010307 TTTA-TT-TTA-
1 TTTATTTATTAT
*
85010316 ATTATTTATTAT
1 TTTATTTATTAT
85010328 TTTATCTTAATTAT
1 TTTAT-TT-ATTAT
* *
85010342 GTTACTTAATTAT
1 TTTA-TTTATTAT
85010355 TT
1 TT
85010357 AGTTTATTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
9 3 0.06
10 5 0.10
11 5 0.10
12 16 0.32
13 11 0.22
14 9 0.18
15 1 0.02
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (12 bp):
TTTATTTATTAT
Found at i:85010322 original size:21 final size:21
Alignment explanation
Indices: 85010296--85010341 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
85010286 ATTTTTATTT
*
85010296 TTATTTATTATTTTATTTTAA
1 TTATTTATTATTTTATCTTAA
85010317 TTATTTATTATTTTATCTTAA
1 TTATTTATTATTTTATCTTAA
85010338 TTAT
1 TTAT
85010342 GTTACTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (21 bp):
TTATTTATTATTTTATCTTAA
Found at i:85013228 original size:97 final size:97
Alignment explanation
Indices: 85013040--85013229 Score: 285
Period size: 97 Copynumber: 2.0 Consensus size: 97
85013030 TTTTTAAGAA
*
85013040 TATGTTGGGCTGAGTAACCGGGGTGAGGTGCTTAGCTGTCATCTCTCTTCGTATCAAAAGGTTCG
1 TATGTTGGGCTGAGTAACCGGGGTGAGGTGCTTAGCTGTCATCTCTCTTCGTATCAAAAGGTTCA
* *
85013105 ATATGTTCTTAAGAAAAATAAAAAATTAGGAG
66 ATATATTCCTAAGAAAAATAAAAAATTAGGAG
* * * *
85013137 TATGTTGGGCTGAGTAACTGGGGTGGGGTGCTTGGCTGTCATCTCTCTTTGT-T-AAAAGGTTCA
1 TATGTTGGGCTGAGTAACCGGGGTGAGGTGCTTAGCTGTCATCTCTCTTCGTATCAAAAGGTTCA
85013200 ATATATTCCTAAGTAAAAATAAATAAATTA
66 ATATATTCCTAAG-AAAAATAAA-AAATTA
85013230 AACCATTAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
95 20 0.24
96 10 0.12
97 54 0.64
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (97 bp):
TATGTTGGGCTGAGTAACCGGGGTGAGGTGCTTAGCTGTCATCTCTCTTCGTATCAAAAGGTTCA
ATATATTCCTAAGAAAAATAAAAAATTAGGAG
Found at i:85013840 original size:14 final size:13
Alignment explanation
Indices: 85013821--85013858 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
85013811 ATTTAATGTT
85013821 TAATTATATTAGGA
1 TAATTAT-TTAGGA
*
85013835 TAATTATTAAGGA
1 TAATTATTTAGGA
85013848 TAATTATTTAG
1 TAATTATTTAG
85013859 ATTTAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAATTATTTAGGA
Found at i:85016196 original size:23 final size:24
Alignment explanation
Indices: 85016170--85016216 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
85016160 ATTTAAAAAA
*
85016170 TTTAAAAAAATTA-TAAAATTATT
1 TTTAAAAAAAGTATTAAAATTATT
*
85016193 TTTAAAAGAAGTATTAAAATTATT
1 TTTAAAAAAAGTATTAAAATTATT
85016217 GAAAAAGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTTAAAAAAAGTATTAAAATTATT
Found at i:85024431 original size:19 final size:20
Alignment explanation
Indices: 85024409--85024461 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
85024399 TCACTTGTTC
85024409 TTTTT-TTTTCTTTTGCT-A
1 TTTTTCTTTTCTTTTGCTCA
* *
85024427 TTTTTGC-ATTCTTTTTCTCA
1 TTTTT-CTTTTCTTTTGCTCA
85024447 TTTTTCTTTTCTTTT
1 TTTTTCTTTTCTTTT
85024462 TTCACATCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 5 0.18
19 10 0.36
20 13 0.46
ACGTcount: A:0.06, C:0.15, G:0.04, T:0.75
Consensus pattern (20 bp):
TTTTTCTTTTCTTTTGCTCA
Found at i:85024485 original size:21 final size:20
Alignment explanation
Indices: 85024435--85024485 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
85024425 TATTTTTGCA
* *
85024435 TTCTTTTTCTCATTTTTCTT
1 TTCTTTTTCACATTATTCTT
85024455 TTCTTTTTTCACATCTATTCTT
1 TTC-TTTTTCACAT-TATTCTT
85024477 TTCTTTTTC
1 TTCTTTTTC
85024486 TCTTAATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 3 0.11
21 15 0.56
22 9 0.33
ACGTcount: A:0.08, C:0.22, G:0.00, T:0.71
Consensus pattern (20 bp):
TTCTTTTTCACATTATTCTT
Found at i:85026650 original size:12 final size:12
Alignment explanation
Indices: 85026628--85026652 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85026618 AAATATAAAT
85026628 ATTCATATAATC
1 ATTCATATAATC
85026640 ATTCATATAATC
1 ATTCATATAATC
85026652 A
1 A
85026653 CAATTTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTCATATAATC
Found at i:85036415 original size:2 final size:2
Alignment explanation
Indices: 85036408--85036436 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
85036398 TTGTCTTCCC
85036408 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
85036437 ACACAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:85038069 original size:21 final size:19
Alignment explanation
Indices: 85038040--85038078 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
85038030 ACAAAACATA
85038040 CCATAACAAACCATTACCAAG
1 CCATAACAAA-C-TTACCAAG
*
85038061 CCATTACAAACTTACCAA
1 CCATAACAAACTTACCAA
85038079 AAGAACCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 1 0.06
21 9 0.53
ACGTcount: A:0.46, C:0.33, G:0.03, T:0.18
Consensus pattern (19 bp):
CCATAACAAACTTACCAAG
Found at i:85045602 original size:21 final size:19
Alignment explanation
Indices: 85045573--85045611 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
85045563 ACAAAACATA
85045573 CCATAACAAACCATTACCAAG
1 CCATAACAAA-C-TTACCAAG
*
85045594 CCATTACAAACTTACCAA
1 CCATAACAAACTTACCAA
85045612 AAGAACTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 1 0.06
21 9 0.53
ACGTcount: A:0.46, C:0.33, G:0.03, T:0.18
Consensus pattern (19 bp):
CCATAACAAACTTACCAAG
Found at i:85054881 original size:42 final size:43
Alignment explanation
Indices: 85054781--85054881 Score: 100
Period size: 43 Copynumber: 2.4 Consensus size: 43
85054771 AGTTCATACA
* * * *
85054781 ATGCCAAC-GTCCCAGACATGGTCTTTCATGTAATCAAACATCG
1 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAAACATCG
* * *
85054824 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAACATCG
85054866 ATGCCGA-TGTCCCAGA
1 ATGCC-ACTGTCCCAGA
85054882 ATGTCCAAGA
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
42 17 0.35
43 31 0.65
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAACATCG
Found at i:85058178 original size:83 final size:83
Alignment explanation
Indices: 85058039--85058205 Score: 334
Period size: 83 Copynumber: 2.0 Consensus size: 83
85058029 ATCGAACTAA
85058039 TCCAAAACTTTTGCTTTGCCTTGATCTAGGTCCGTGCGTGGTCTATCTTGATCTAAATAGACAAT
1 TCCAAAACTTTTGCTTTGCCTTGATCTAGGTCCGTGCGTGGTCTATCTTGATCTAAATAGACAAT
85058104 TTTAATCCATTGAATACT
66 TTTAATCCATTGAATACT
85058122 TCCAAAACTTTTGCTTTGCCTTGATCTAGGTCCGTGCGTGGTCTATCTTGATCTAAATAGACAAT
1 TCCAAAACTTTTGCTTTGCCTTGATCTAGGTCCGTGCGTGGTCTATCTTGATCTAAATAGACAAT
85058187 TTTAATCCATTGAATACT
66 TTTAATCCATTGAATACT
85058205 T
1 T
85058206 ATAGTATTCA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (83 bp):
TCCAAAACTTTTGCTTTGCCTTGATCTAGGTCCGTGCGTGGTCTATCTTGATCTAAATAGACAAT
TTTAATCCATTGAATACT
Found at i:85063289 original size:16 final size:16
Alignment explanation
Indices: 85063270--85063300 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85063260 AACTTCTTCA
*
85063270 CTTACTTACTTAAATG
1 CTTACTTAATTAAATG
85063286 CTTACTTAATTAAAT
1 CTTACTTAATTAAAT
85063301 TTATTGATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.03, T:0.45
Consensus pattern (16 bp):
CTTACTTAATTAAATG
Found at i:85063674 original size:55 final size:52
Alignment explanation
Indices: 85063533--85063740 Score: 172
Period size: 55 Copynumber: 3.8 Consensus size: 52
85063523 ATCCTTTTGA
* * *
85063533 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGCATCCTTGCCTTATG
1 AACTTA-CAATGCCATGTCTTGACATGGTCTTACATAGCATCCTTGCCTTATG
* * *
85063586 AACTCACTAATGCCATGCCTTGGCATGGTCTTACATAAG-A-CCTTTGCCTTATAG
1 AACTTAC-AATGCCATGTCTTGACATGGTCTTACAT-AGCATCC-TTGCCTTAT-G
* *
85063640 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCGC-TGCCTTA-G
1 -AACTTA-CAATGCCATGTCTTGACATGGTCTTACATAGCATC-CTTGCCTTATG
* * * *
85063693 AAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -AA-CTTA-CAA-TGCCATGTCTTGACATGGTCTTACATAGCATCCTT
85063741 AAACCCTAAT
Statistics
Matches: 129, Mismatches: 14, Indels: 22
0.78 0.08 0.13
Matches are distributed among these distances:
52 3 0.02
53 42 0.33
54 11 0.09
55 70 0.54
56 2 0.02
57 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (52 bp):
AACTTACAATGCCATGTCTTGACATGGTCTTACATAGCATCCTTGCCTTATG
Found at i:85063677 original size:108 final size:110
Alignment explanation
Indices: 85063533--85063731 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
85063523 ATCCTTTTGA
* *
85063533 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGCATC-CTTGCCTTATG-AA-CTCACTA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGCATCGC-TGCCTTA-GAAACCTCACCA
85063595 A-TGCCATGCCTTGGCATGGTCTTACATAAGACCTTTGCCTTATAGT
64 ATTGCCATGCCTTGGCATGGTCTTACATAAGACCTTTGCCTTATAGT
* * * *
85063641 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCGCTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGCATCGCTGCCTTAGAAACCTCACCAAT
85063706 TGCCATGCCTTGGCATGGTCTTACAT
66 TGCCATGCCTTGGCATGGTCTTACAT
85063732 GGTATCCTTA
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
107 1 0.01
108 47 0.58
109 7 0.09
110 26 0.32
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGCATCGCTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATAAGACCTTTGCCTTATAGT
Found at i:85069162 original size:44 final size:44
Alignment explanation
Indices: 85069099--85069189 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
85069089 AACTCTATTT
* *
85069099 TTAGTTTCTCACTTAAACTCTGATTAATTTAGGTTATTTTAATA
1 TTAGTTTCTCACTTAAACTCTGATTAATGTAGGTTATGTTAATA
* *
85069143 TTAGTTTC-CTACTTAAACTCTTATTAGTGTAGGTTATGTTAATA
1 TTAGTTTCTC-ACTTAAACTCTGATTAATGTAGGTTATGTTAATA
85069187 TTA
1 TTA
85069190 TTTGACCTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 1 0.02
44 41 0.98
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (44 bp):
TTAGTTTCTCACTTAAACTCTGATTAATGTAGGTTATGTTAATA
Found at i:85069313 original size:21 final size:21
Alignment explanation
Indices: 85069289--85069342 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
85069279 TTTTAAAGAA
85069289 TTTTGTATTTATGTTTTGAGG
1 TTTTGTATTTATGTTTTGAGG
* *
85069310 TTTTTTATTTTATGTTTTGGGG
1 TTTTGTA-TTTATGTTTTGAGG
*
85069332 TTTAGT-TTTAT
1 TTTTGTATTTAT
85069343 CTCCATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 5 0.18
21 6 0.21
22 17 0.61
ACGTcount: A:0.13, C:0.00, G:0.20, T:0.67
Consensus pattern (21 bp):
TTTTGTATTTATGTTTTGAGG
Found at i:85078033 original size:43 final size:43
Alignment explanation
Indices: 85077984--85078133 Score: 180
Period size: 43 Copynumber: 3.5 Consensus size: 43
85077974 TATCCTAGAT
* * *
85077984 ATGGTCTTACATGTTATCACATATA-GATGCCACTGTCCTAAAC
1 ATGGTCTTACATGTAATCACATATACGATGCCAATGTCC-AGAC
* * * * *
85078027 AGGGTCTTACACGAAATCATATA-ATGATGCCAATGTCCAGAC
1 ATGGTCTTACATGTAATCACATATACGATGCCAATGTCCAGAC
*
85078069 ATGGTCTTACATGTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACATATACGATGCCAATGT-CCAGAC
85078112 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACATGTAATCACAT
85078134 CTCAGTAATC
Statistics
Matches: 90, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.01
42 32 0.36
43 57 0.63
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATACGATGCCAATGTCCAGAC
Found at i:85094489 original size:25 final size:25
Alignment explanation
Indices: 85094421--85094494 Score: 85
Period size: 26 Copynumber: 2.9 Consensus size: 25
85094411 CTAATTTTCA
*
85094421 CAAAATTTTACTGGGGATAAAATGGT
1 CAAAATTTTACTGGGG-TAAAATAGT
* **
85094447 CACAATTTTTTTGGGGGTAAAATAGT
1 CAAAATTTTACT-GGGGTAAAATAGT
*
85094473 CAAAATTTTACTAGGGTAAAAT
1 CAAAATTTTACTGGGGTAAAAT
85094495 TGGGATGAGA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
25 9 0.23
26 26 0.67
27 4 0.10
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (25 bp):
CAAAATTTTACTGGGGTAAAATAGT
Found at i:85102063 original size:364 final size:364
Alignment explanation
Indices: 85101394--85102482 Score: 2007
Period size: 364 Copynumber: 3.0 Consensus size: 364
85101384 GCTCGGATGC
* * * *
85101394 CACATATATCACAAACCCGAACCACTCAACAAGTTCGGACTTCTTAATTCCTAGTGACATGTCAC
1 CACATATATCACGAACCCGGACCACTCAACGAGTTCGGAATTCTTAATTCCTAGTGACATGTCAC
*
85101459 TTGTATTCTAAACTATTCCTAAGGTTCAAATGGGGTTTTTCTCACATGCACATTGCACCTCTATT
66 TTGTATTCTAAACTATTCCTAAGGTTCAAATGGGGTTTTTCTCACTTGCACATTGCACCTCTATT
85101524 GCACTTGCTCGTGACGTAGTGGATAGCGACCATAATATCATTCATGCTTACAGTAGTACCATTAG
131 GCACTTGCTCGTGACGTAGTGGATAGCGACCATAATATCATTCATGCTTACAGTAGTACCATTAG
85101589 ACATAGCATACATAATAAGCAATAAAATAATTATCACATAATGTTAACACAACATAACATACCAC
196 ACATAGCATACATAATAAGCAATAAAATAATTATCACATAATGTTAACACAACATAACATACCAC
* *
85101654 ATTGTCACATTATTCACACATGTACTTACCTCAGTAAAAAAATGATGGTAATTGAGCCTAATCAT
261 ATTGTCACATTATTCACACATGTACTTACCTCAGTAAAAAAATGATGGTAATCGAGCCTAATCGT
85101719 CGTATACTTTATTCTTCCCTCGATCAAGACCCGGTTATT
326 CGTATACTTTATTCTTCCCTCGATCAAGACCCGGTTATT
85101758 CACATATATCACGAACCCGGACCACTCAACGAGTTCGGAATTCTTAATTCCTAGTGACATGTCAC
1 CACATATATCACGAACCCGGACCACTCAACGAGTTCGGAATTCTTAATTCCTAGTGACATGTCAC
*
85101823 TTGTATTCTAAAATATTCCTAAGGTTCAAATGGGGTTTTTCTCACTTGCACATTGCACCTCTATT
66 TTGTATTCTAAACTATTCCTAAGGTTCAAATGGGGTTTTTCTCACTTGCACATTGCACCTCTATT
*
85101888 GCACTTGCTCGTGACGTAGTGGATAGCAACCATAATATCATTCATGCTTACAGTAGTACCATTAG
131 GCACTTGCTCGTGACGTAGTGGATAGCGACCATAATATCATTCATGCTTACAGTAGTACCATTAG
* *
85101953 ACATAACATACATAATAAGCAATAAAATAGTTATCACATAATGTTAACACAACATAACATACCAC
196 ACATAGCATACATAATAAGCAATAAAATAATTATCACATAATGTTAACACAACATAACATACCAC
*
85102018 ATTGTCACATTATTCACACATGTACTTACTTCAGTAAAAAAATGATGGTAATCGAGCCTAATCGT
261 ATTGTCACATTATTCACACATGTACTTACCTCAGTAAAAAAATGATGGTAATCGAGCCTAATCGT
85102083 CGTATACTTTATTCTTCCCTCGATCAAGACCCGGTTATT
326 CGTATACTTTATTCTTCCCTCGATCAAGACCCGGTTATT
*
85102122 CACATATATCACGAACCCGGACCACTCAACGAGTTCGAAATTCTTAATTCCTAGTGACATGTCAC
1 CACATATATCACGAACCCGGACCACTCAACGAGTTCGGAATTCTTAATTCCTAGTGACATGTCAC
* *
85102187 TTGTATTCTAAACTATTCCTGATGTTCAAATGGGGTTTTTCTCACTTGCACATTGCACCTCTATT
66 TTGTATTCTAAACTATTCCTAAGGTTCAAATGGGGTTTTTCTCACTTGCACATTGCACCTCTATT
*
85102252 GCATTTGCTCGTGACGTAGTGGATAGCGACCATAATATCATTCATGCTTACAGTAGTACCATTAG
131 GCACTTGCTCGTGACGTAGTGGATAGCGACCATAATATCATTCATGCTTACAGTAGTACCATTAG
*
85102317 ACATAGCATACATAATAAGCAATAAAATAATTATCACATAATGTTAACACAACCTAACATACCAC
196 ACATAGCATACATAATAAGCAATAAAATAATTATCACATAATGTTAACACAACATAACATACCAC
* *
85102382 ATTGTCACATTATTCACACATGTACTTACCTCGGTACAAAAATGATGGTAATCGAGCCTAATCGT
261 ATTGTCACATTATTCACACATGTACTTACCTCAGTAAAAAAATGATGGTAATCGAGCCTAATCGT
85102447 CGTATACTTTATTCTTCCCTCGATCAAGACCCGGTT
326 CGTATACTTTATTCTTCCCTCGATCAAGACCCGGTT
85102483 CATATTTTTC
Statistics
Matches: 701, Mismatches: 24, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
364 701 1.00
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (364 bp):
CACATATATCACGAACCCGGACCACTCAACGAGTTCGGAATTCTTAATTCCTAGTGACATGTCAC
TTGTATTCTAAACTATTCCTAAGGTTCAAATGGGGTTTTTCTCACTTGCACATTGCACCTCTATT
GCACTTGCTCGTGACGTAGTGGATAGCGACCATAATATCATTCATGCTTACAGTAGTACCATTAG
ACATAGCATACATAATAAGCAATAAAATAATTATCACATAATGTTAACACAACATAACATACCAC
ATTGTCACATTATTCACACATGTACTTACCTCAGTAAAAAAATGATGGTAATCGAGCCTAATCGT
CGTATACTTTATTCTTCCCTCGATCAAGACCCGGTTATT
Found at i:85103966 original size:49 final size:49
Alignment explanation
Indices: 85103851--85103966 Score: 124
Period size: 49 Copynumber: 2.4 Consensus size: 49
85103841 ACTCCAGCTC
** *** *
85103851 ATGGTGGTTATACATTCATGGGTTGAAGTATAAATAAGGCTCCTAATTG
1 ATGGTGGTTATACGGTCATGGGTTGAAGTATAAATAAGAAGCCTAATTA
* * * * *
85103900 ATGGTTGTTATATGGTCATGGGTTGGAGTATAAGTCAGAAGCCTAATTA
1 ATGGTGGTTATACGGTCATGGGTTGAAGTATAAATAAGAAGCCTAATTA
*
85103949 ATGGTGGTTATGCGGTCA
1 ATGGTGGTTATACGGTCA
85103967 CGAGTTCAAG
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.34
Consensus pattern (49 bp):
ATGGTGGTTATACGGTCATGGGTTGAAGTATAAATAAGAAGCCTAATTA
Found at i:85105500 original size:14 final size:13
Alignment explanation
Indices: 85105463--85105502 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
85105453 TAAATATCAC
*
85105463 ACAAAAAAATTTA
1 ACAAAAAAATTTT
85105476 ACAAAAAAATTTT
1 ACAAAAAAATTTT
*
85105489 ACAATAATAATTTT
1 ACAA-AAAAATTTT
85105503 TTTATTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 16 0.67
14 8 0.33
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (13 bp):
ACAAAAAAATTTT
Found at i:85110177 original size:108 final size:108
Alignment explanation
Indices: 85109920--85110178 Score: 373
Period size: 108 Copynumber: 2.4 Consensus size: 108
85109910 ATAATTAATA
* * *
85109920 TTGTTAATTACCCTGTTAAAGTTTTTGACGTGTTTTTTT-AA-AATGATATGTTAAGTTAGAATA
1 TTGTTAATTACTCTGATAAAATTTTTGACGTGTTTTTTTAAACAATGATATGTTAAGTTAGAATA
85109983 AGTTTTAAATAATAAAATTTCTAACAAAATTGTATTAAAATTT
66 AGTTTTAAATAATAAAATTTCTAACAAAATTGTATTAAAATTT
* * **** *
85110026 TTGTTAATTACTTTGAT-AAATGTTTTGA-TTAGTTTAACAAAACAATGATATGTTAAGTTGGAA
1 TTGTTAATTACTCTGATAAAAT-TTTTGACGT-GTTTTTTTAAACAATGATATGTTAAGTTAGAA
85110089 TAAGTTTTAAATAATAAAATTTCTAACAAAATTGTATTAAAATTT
64 TAAGTTTTAAATAATAAAATTTCTAACAAAATTGTATTAAAATTT
*
85110134 TTGTTAATTACTCTAATAAAATTTTTGACGTGTTTTTTTAAACAA
1 TTGTTAATTACTCTGATAAAATTTTTGACGTGTTTTTTTAAACAA
85110179 AATATTAGTT
Statistics
Matches: 130, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
105 4 0.03
106 24 0.18
107 2 0.02
108 95 0.73
109 5 0.04
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.45
Consensus pattern (108 bp):
TTGTTAATTACTCTGATAAAATTTTTGACGTGTTTTTTTAAACAATGATATGTTAAGTTAGAATA
AGTTTTAAATAATAAAATTTCTAACAAAATTGTATTAAAATTT
Found at i:85111192 original size:19 final size:19
Alignment explanation
Indices: 85111150--85111240 Score: 71
Period size: 19 Copynumber: 4.9 Consensus size: 19
85111140 TATTAAAATA
* *
85111150 TAAAAATATTTAAAAGTTG
1 TAAAATTATTTAAAATTTG
* *
85111169 CAAAATTATTTAAATTTTG
1 TAAAATTATTTAAAATTTG
*
85111188 TAAAA--ATTTAAAAATTG
1 TAAAATTATTTAAAATTTG
* *
85111205 TGAAAATCATTAAAAATTT-
1 T-AAAATTATTTAAAATTTG
* *
85111224 AAAAATGATTTAAAATT
1 TAAAATTATTTAAAATT
85111241 ATAAAAAAAA
Statistics
Matches: 57, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
17 11 0.19
18 18 0.32
19 19 0.33
20 9 0.16
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (19 bp):
TAAAATTATTTAAAATTTG
Found at i:85111193 original size:38 final size:38
Alignment explanation
Indices: 85111150--85111269 Score: 95
Period size: 36 Copynumber: 3.2 Consensus size: 38
85111140 TATTAAAATA
* * *
85111150 TAAAAATATTTAAAAGTTGCAAAATTATTTAAATTTTG
1 TAAAAATATTTAAAAATTGAAAAATAATTTAAATTTTG
* * **
85111188 T-AAAA-ATTTAAAAATTGTGAAAATCA-TTAAAAATT-
1 TAAAAATATTTAAAAATTG-AAAAATAATTTAAATTTTG
* * *
85111223 TAAAAATGATTTAAAATTATAAAAAAAAATTTAAATTTTG
1 TAAAAAT-ATTTAAAAAT-TGAAAAATAATTTAAATTTTG
85111263 TAAAAAT
1 TAAAAAT
85111270 CATAAGAAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
35 1 0.02
36 22 0.35
37 10 0.16
38 15 0.24
39 8 0.13
40 7 0.11
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.38
Consensus pattern (38 bp):
TAAAAATATTTAAAAATTGAAAAATAATTTAAATTTTG
Found at i:85111228 original size:18 final size:19
Alignment explanation
Indices: 85111195--85111247 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
85111185 TTGTAAAAAT
* *
85111195 TTAAAAATTGTGAAAATCA
1 TTAAAAATTATAAAAATCA
*
85111214 TTAAAAATT-TAAAAATGA
1 TTAAAAATTATAAAAATCA
*
85111232 TTTAAAATTATAAAAA
1 TTAAAAATTATAAAAA
85111248 AAAATTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (19 bp):
TTAAAAATTATAAAAATCA
Found at i:85111245 original size:19 final size:17
Alignment explanation
Indices: 85111142--85111247 Score: 70
Period size: 19 Copynumber: 5.8 Consensus size: 17
85111132 TTTATATTTA
*
85111142 TTAAAATATAAAAATAT
1 TTAAAATTTAAAAATAT
* *
85111159 TTAAAAGTTGCAAAATTAT
1 TTAAAA-TT-TAAAAATAT
*
85111178 TTAAATTTTGTAAAAAT-T
1 TTAAA-ATT-TAAAAATAT
* *
85111196 TAAAAATTGTGAAAATCAT
1 TTAAAATT-TAAAAAT-AT
*
85111215 TAAAAATTTAAAAATGAT
1 TTAAAATTTAAAAAT-AT
85111233 TTAAAATTATAAAAA
1 TTAAAATT-TAAAAA
85111248 AAAATTTAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
17 15 0.21
18 21 0.30
19 35 0.49
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.37
Consensus pattern (17 bp):
TTAAAATTTAAAAATAT
Found at i:85111245 original size:27 final size:26
Alignment explanation
Indices: 85111170--85111247 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 26
85111160 TAAAAGTTGC
* * *
85111170 AAAATTATTTAAATTTTGTAAAAATTT
1 AAAAATATTTAAA-ATTATAAAAATTT
* *
85111197 AAAAAT-TGTGAAAATCATTAAAAATTT
1 AAAAATAT-TTAAAATTA-TAAAAATTT
85111224 AAAAATGATTTAAAATTATAAAAA
1 AAAAAT-ATTTAAAATTATAAAAA
85111248 AAAATTTAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
26 2 0.05
27 30 0.75
28 7 0.17
29 1 0.03
ACGTcount: A:0.56, C:0.01, G:0.05, T:0.37
Consensus pattern (26 bp):
AAAAATATTTAAAATTATAAAAATTT
Found at i:85111558 original size:16 final size:17
Alignment explanation
Indices: 85111537--85111570 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
85111527 TTAGTTTGGG
85111537 TTATGG-TTAAGGTTTT
1 TTATGGTTTAAGGTTTT
85111553 TTATGGTTTAAGGTTTT
1 TTATGGTTTAAGGTTTT
85111570 T
1 T
85111571 AAGGTAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.59
Consensus pattern (17 bp):
TTATGGTTTAAGGTTTT
Found at i:85112671 original size:27 final size:27
Alignment explanation
Indices: 85112633--85112701 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
85112623 CAGATTTCAA
*
85112633 CCAAACATACCAGAATAAATAATCCTC
1 CCAAACACACCAGAATAAATAATCCTC
85112660 CCAAACACACCAGAATAAATAATCCTC
1 CCAAACACACCAGAATAAATAATCCTC
*
85112687 CCAAACACACTAGAA
1 CCAAACACACCAGAA
85112702 AGGCATTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.49, C:0.32, G:0.04, T:0.14
Consensus pattern (27 bp):
CCAAACACACCAGAATAAATAATCCTC
Found at i:85113899 original size:18 final size:18
Alignment explanation
Indices: 85113856--85113902 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
85113846 CTTGTCTTGA
* *
85113856 TTTAATTTAATTTATTTG
1 TTTAATATAATTTATATG
*
85113874 TTTTATATAATTTAATAT-
1 TTTAATATAATTT-ATATG
85113892 TTTAATATAAT
1 TTTAATATAAT
85113903 AAAAATATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 21 0.88
19 3 0.12
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTAATATAATTTATATG
Found at i:85120272 original size:27 final size:27
Alignment explanation
Indices: 85120229--85120297 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
85120219 CTGATTTCAA
*
85120229 CCAAACACACCAAAATAAATAATCCTC
1 CCAAACACACCAGAATAAATAATCCTC
*
85120256 CCAAACACACTAGAATAAATAATCCTC
1 CCAAACACACCAGAATAAATAATCCTC
*
85120283 CTAAACACACCAGAA
1 CCAAACACACCAGAA
85120298 AGGTATTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.51, C:0.32, G:0.03, T:0.14
Consensus pattern (27 bp):
CCAAACACACCAGAATAAATAATCCTC
Found at i:85124898 original size:26 final size:26
Alignment explanation
Indices: 85124869--85124976 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
85124859 TGGTACAAAT
85124869 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
** *
85124895 TGATAATGAATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85124921 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85124947 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85124973 TGAT
1 TGAT
85124977 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85126674 original size:27 final size:26
Alignment explanation
Indices: 85126573--85126684 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
85126563 AGGAAGCGTC
* * *
85126573 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
85126600 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
85126627 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
*
85126655 CTGGTGAG-TCTGTCACATTATCTGTT
1 CTGGTG-GCTCTGCCACATTATCTGTT
85126681 CTGG
1 CTGG
85126685 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
26 6 0.08
27 54 0.70
28 16 0.21
29 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:85126677 original size:54 final size:54
Alignment explanation
Indices: 85126573--85126684 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
85126563 AGGAAGCGTC
85126573 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * *
85126627 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGAG-TCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTG-GCTCTGCCACATATATCTGTT
85126681 CTGG
1 CTGG
85126685 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
54 34 0.65
55 17 0.33
56 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:85143390 original size:24 final size:24
Alignment explanation
Indices: 85143354--85143463 Score: 79
Period size: 24 Copynumber: 4.6 Consensus size: 24
85143344 AAAAGATGTT
*
85143354 ATAAAAGCAATTTTAAGTGAAT-AAC
1 ATAAAA-CAATTTAAAGT-AATCAAC
*
85143379 ATAAAACAATTTAAAATAATCAAC
1 ATAAAACAATTTAAAGTAATCAAC
85143403 ATACAAAACAATTTAAAGT-A--AA-
1 AT--AAAACAATTTAAAGTAATCAAC
* * *
85143425 ATAAAGCGATTTAAAATAAAT-AAC
1 ATAAAACAATTTAAAGT-AATCAAC
*
85143449 ATATAACAATTTAAA
1 ATAAAACAATTTAAA
85143464 AGAACATATA
Statistics
Matches: 69, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
20 12 0.17
22 3 0.04
23 7 0.10
24 26 0.38
25 7 0.10
26 14 0.20
ACGTcount: A:0.59, C:0.09, G:0.05, T:0.26
Consensus pattern (24 bp):
ATAAAACAATTTAAAGTAATCAAC
Found at i:85143475 original size:46 final size:45
Alignment explanation
Indices: 85143387--85143516 Score: 108
Period size: 45 Copynumber: 2.8 Consensus size: 45
85143377 ACATAAAACA
85143387 ATTTAAAAT-AATCAACATACAAAACAATTTAAAGTAAAAT-AAAGCG
1 ATTTAAAATAAAT-AACATA-AAAACAATTTAAAGTAAAATAAAAG-G
*
85143433 ATTTAAAATAAATAACAT-ATAACAATTTAAAAG-AACATATAAAAGG
1 ATTTAAAATAAATAACATAAAAACAATTT-AAAGTAA-A-ATAAAAGG
* * * *
85143479 -TCTAAAATAAATAATATAGAAAAAAATAGTAAAGTAAA
1 ATTTAAAATAAATAACATA-AAAACAAT-TTAAAGTAAA
85143517 TAATATACAT
Statistics
Matches: 69, Mismatches: 6, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
44 11 0.16
45 20 0.29
46 17 0.25
47 18 0.26
48 3 0.04
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.25
Consensus pattern (45 bp):
ATTTAAAATAAATAACATAAAAACAATTTAAAGTAAAATAAAAGG
Found at i:85143562 original size:15 final size:14
Alignment explanation
Indices: 85143529--85143573 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
85143519 ATATACATAA
* *
85143529 AATAAAAATATTTT
1 AATAAAAATAATAT
85143543 AATAAAAATAATAT
1 AATAAAAATAATAT
85143557 ATATAAAAATAA-AT
1 A-ATAAAAATAATAT
85143571 AAT
1 AAT
85143574 GTATAAAGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 2 0.07
14 16 0.57
15 10 0.36
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AATAAAAATAATAT
Found at i:85143570 original size:19 final size:19
Alignment explanation
Indices: 85143513--85143578 Score: 68
Period size: 17 Copynumber: 3.7 Consensus size: 19
85143503 AATAGTAAAG
*
85143513 TAAATAATATACAT-AAAA
1 TAAATAATATATATAAAAA
* *
85143531 TAAA-AATAT-TTTAATAA
1 TAAATAATATATATAAAAA
85143548 -AAATAATATATATAAAAA
1 TAAATAATATATATAAAAA
*
85143566 TAAATAATGTATA
1 TAAATAATATATA
85143579 AAGAGTTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
16 4 0.11
17 13 0.34
18 10 0.26
19 11 0.29
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAATAATATATATAAAAA
Found at i:85145739 original size:29 final size:29
Alignment explanation
Indices: 85145681--85145766 Score: 95
Period size: 29 Copynumber: 2.9 Consensus size: 29
85145671 GTTATTGTAC
* *
85145681 TATTTGTAAA-TTTAAATTTTAGTCTATT
1 TATTTTTAAATTTTAAAATTTAGTCTATT
* *
85145709 TATTTTT-ATTTTTAAAAATTTAGTCTCTT
1 TATTTTTAAATTTT-AAAATTTAGTCTATT
85145738 TATTTTTCAAATTTTAAAATTTAGATCTA
1 TATTTTT-AAATTTTAAAATTTAG-TCTA
85145767 ACTGTTAACA
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
27 1 0.02
28 9 0.19
29 20 0.43
30 9 0.19
31 8 0.17
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.57
Consensus pattern (29 bp):
TATTTTTAAATTTTAAAATTTAGTCTATT
Found at i:85154854 original size:26 final size:26
Alignment explanation
Indices: 85154818--85154925 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
85154808 TGAAATGCCC
* *
85154818 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
85154844 ATCATTGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85154870 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85154896 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85154922 ATCA
1 ATCA
85154926 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:85160656 original size:26 final size:26
Alignment explanation
Indices: 85160620--85160727 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
85160610 TGAAATGCCA
* *
85160620 ATCATGGAACATTTACCTAAACTATT
1 ATCATGGAACATTTACCTAACCCATT
85160646 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85160672 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85160698 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85160724 ATCA
1 ATCA
85160728 ATTTGTACCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:85161444 original size:12 final size:12
Alignment explanation
Indices: 85161417--85161459 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
85161407 TGATATTGTT
*
85161417 ATTTTTTAATACA
1 ATTTTTTTATA-A
85161430 ATTTTTTTATAA
1 ATTTTTTTATAA
85161442 ATTTTGTTTAT-A
1 ATTTT-TTTATAA
85161454 ATTTTT
1 ATTTTT
85161460 ATGTTTTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 1 0.04
12 12 0.43
13 15 0.54
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (12 bp):
ATTTTTTTATAA
Found at i:85163768 original size:17 final size:17
Alignment explanation
Indices: 85163746--85163781 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
85163736 ATTTACATTT
*
85163746 AAATTATTAACATCTTG
1 AAATTATTAACATATTG
85163763 AAATTATTAACATATTG
1 AAATTATTAACATATTG
85163780 AA
1 AA
85163782 TTTTAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.47, C:0.08, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATTATTAACATATTG
Found at i:85165371 original size:11 final size:11
Alignment explanation
Indices: 85165357--85165436 Score: 97
Period size: 11 Copynumber: 6.9 Consensus size: 11
85165347 AGATAAATAT
85165357 TATTTTATTAA
1 TATTTTATTAA
*
85165368 TATTTTAATAATA
1 TATTTT-ATTA-A
85165381 TATTTTATTAA
1 TATTTTATTAA
*
85165392 TATTTTAATAATA
1 TATTTT-ATTA-A
85165405 TATTTTATTAA
1 TATTTTATTAA
*
85165416 TATTTTAATAA
1 TATTTTATTAA
85165427 TATTTTATTA
1 TATTTTATTA
85165437 GTATATAAAG
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
11 33 0.56
12 12 0.20
13 14 0.24
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:85165385 original size:13 final size:13
Alignment explanation
Indices: 85165367--85165429 Score: 80
Period size: 13 Copynumber: 5.2 Consensus size: 13
85165357 TATTTTATTA
85165367 ATATTTTAATAAT
1 ATATTTTAATAAT
*
85165380 ATATTTT-ATTA-
1 ATATTTTAATAAT
85165391 ATATTTTAATAAT
1 ATATTTTAATAAT
*
85165404 ATATTTT-ATTA-
1 ATATTTTAATAAT
85165415 ATATTTTAATAAT
1 ATATTTTAATAAT
85165428 AT
1 AT
85165430 TTTATTAGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
11 14 0.33
12 12 0.29
13 16 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATATTTTAATAAT
Found at i:85165442 original size:24 final size:24
Alignment explanation
Indices: 85165352--85165436 Score: 147
Period size: 24 Copynumber: 3.6 Consensus size: 24
85165342 TAATTAGATA
85165352 AATATTATTTTATTAATATTTTAAT
1 AATA-TATTTTATTAATATTTTAAT
85165377 AATATATTTTATTAATATTTTAAT
1 AATATATTTTATTAATATTTTAAT
85165401 AATATATTTTATTAATATTTTAAT
1 AATATATTTTATTAATATTTTAAT
85165425 -A-ATATTTTATTA
1 AATATATTTTATTA
85165437 GTATATAAAG
Statistics
Matches: 60, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
22 11 0.18
23 1 0.02
24 44 0.73
25 4 0.07
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
AATATATTTTATTAATATTTTAAT
Found at i:85167347 original size:46 final size:46
Alignment explanation
Indices: 85167285--85167595 Score: 410
Period size: 46 Copynumber: 6.7 Consensus size: 46
85167275 ATGAAATATG
* * * * **
85167285 TAAGACCATGGCTGAAAGATGCCATGTCAACATGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
* *
85167331 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
**
85167377 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
* *
85167423 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
* *
85167469 TAAGACCATGGTTG-AAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
*
85167514 TAAGACCATGGTTGAAAGATACCATATGGCAACATGACA-GAAAATGAG
1 TAAGACCATGGTTGAAAGATACC--ATGGCAACATGACATG-AAATGAA
* * * *
85167562 TAAGACCATAGTTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
85167596 TCAAAGATAA
Statistics
Matches: 236, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
45 43 0.18
46 154 0.65
47 1 0.00
48 38 0.16
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
Found at i:85167535 original size:137 final size:139
Alignment explanation
Indices: 85167285--85167595 Score: 464
Period size: 137 Copynumber: 2.2 Consensus size: 139
85167275 ATGAAATATG
* * * * **
85167285 TAAGACCATGGCTGAAAGATGCCATGTCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
*
85167350 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC-ATGGCAACATGACG
66 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCAATGGCAACATGACA
*
85167414 GGAAATGAA
131 GAAAATGAA
* *
85167423 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTG-AAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
85167487 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATATGGCAACATGAC
66 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCA-ATGGCAACATGAC
*
85167552 AGAAAATGAG
130 AGAAAATGAA
* * * *
85167562 TAAGACCATAGTTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
85167596 TCAAAGATAA
Statistics
Matches: 155, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
137 54 0.35
138 52 0.34
139 49 0.32
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (139 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCAATGGCAACATGACA
GAAAATGAA
Found at i:85168927 original size:37 final size:36
Alignment explanation
Indices: 85168878--85168952 Score: 132
Period size: 37 Copynumber: 2.1 Consensus size: 36
85168868 GGTAATAAAA
85168878 TTAAAAAAACTAAATAAAATTAACTCACTGCTCATT
1 TTAAAAAAACTAAATAAAATTAACTCACTGCTCATT
*
85168914 TTAAAAGAAACTAAATAAAATTAACTCCCTGCTCATT
1 TTAAAA-AAACTAAATAAAATTAACTCACTGCTCATT
85168951 TT
1 TT
85168953 GGGGTAACTT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 6 0.16
37 31 0.84
ACGTcount: A:0.47, C:0.17, G:0.04, T:0.32
Consensus pattern (36 bp):
TTAAAAAAACTAAATAAAATTAACTCACTGCTCATT
Done.