Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 252 of 362
Found at i:85174011 original size:20 final size:20
Alignment explanation
Indices: 85173960--85174015 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
85173950 TAAATTGTAA
* *
85173960 TTCATTCATATAACCAGTAG
1 TTCATCCATATAAACAGTAG
* *
85173980 TTTATCCGTATAAACAGTAG
1 TTCATCCATATAAACAGTAG
*
85174000 TTCATCTATATAAACA
1 TTCATCCATATAAACA
85174016 CATATCTTAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (20 bp):
TTCATCCATATAAACAGTAG
Found at i:85174234 original size:22 final size:22
Alignment explanation
Indices: 85174177--85174245 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
85174167 ATTGAGCTGA
* * * *
85174177 TGAATAGTAAGATCTGTTGAGC
1 TGAACAGTAAGCTCTATCGAGC
*
85174199 TGAAACGGTAAGCTCTATCGAGC
1 TG-AACAGTAAGCTCTATCGAGC
85174222 TGAACAGTAAGCTC-ATACGAGC
1 TGAACAGTAAGCTCTAT-CGAGC
85174244 TG
1 TG
85174246 TGATAAGTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 2 0.05
22 20 0.51
23 17 0.44
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCGAGC
Found at i:85175766 original size:21 final size:22
Alignment explanation
Indices: 85175722--85175768 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
85175712 AATTTTATTG
85175722 TTCACCCCAAAAGGAAATTTTT
1 TTCACCCCAAAAGGAAATTTTT
85175744 TTCACCCCAAAAGGAAATTTTT
1 TTCACCCCAAAAGGAAATTTTT
85175766 TTC
1 TTC
85175769 TAGTTCTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (22 bp):
TTCACCCCAAAAGGAAATTTTT
Found at i:85176643 original size:29 final size:29
Alignment explanation
Indices: 85176610--85176666 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
85176600 ATAGAGAACG
85176610 CCAACTTATGACTTCTATCAATTTAACCA
1 CCAACTTATGACTTCTATCAATTTAACCA
* *
85176639 CCAACTTATGGCTTCTTTCAATTTAACC
1 CCAACTTATGACTTCTATCAATTTAACC
85176667 TCACTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.05, T:0.37
Consensus pattern (29 bp):
CCAACTTATGACTTCTATCAATTTAACCA
Found at i:85179767 original size:3 final size:3
Alignment explanation
Indices: 85179759--85179802 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
85179749 CTACAAAAGC
85179759 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
85179803 ATTTTGCCTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:85180110 original size:26 final size:26
Alignment explanation
Indices: 85180074--85180125 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
85180064 TTTAACTTAG
85180074 TTCATTTTCATCATGCTTACAATATT
1 TTCATTTTCATCATGCTTACAATATT
85180100 TTCATTTTCATCATGCTTACAATATT
1 TTCATTTTCATCATGCTTACAATATT
85180126 CCGAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.04, T:0.50
Consensus pattern (26 bp):
TTCATTTTCATCATGCTTACAATATT
Found at i:85186198 original size:5 final size:5
Alignment explanation
Indices: 85186188--85186243 Score: 60
Period size: 5 Copynumber: 11.0 Consensus size: 5
85186178 TAGGAAGATA
* * *
85186188 TTATT TTATTT TTATTT TTACT TTA-T TTATT TTATT TTATT TTCTT TTAAT
1 TTATT TTA-TT TTA-TT TTATT TTATT TTATT TTATT TTATT TTATT TTATT
85186239 TTATT
1 TTATT
85186244 AAATTAGTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 11 0.25
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:85186240 original size:25 final size:25
Alignment explanation
Indices: 85186188--85186243 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
85186178 TAGGAAGATA
85186188 TTATTTTATTTTTATTTTTACTTTAT
1 TTATTTTATTTTTATTTTTA-TTTAT
85186214 TTATTTTA-TTTTATTTTCT-TTTAAT
1 TTATTTTATTTTTATTTT-TATTT-AT
85186239 TTATT
1 TTATT
85186244 AAATTAGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
24 3 0.11
25 16 0.57
26 9 0.32
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.77
Consensus pattern (25 bp):
TTATTTTATTTTTATTTTTATTTAT
Found at i:85186693 original size:3 final size:3
Alignment explanation
Indices: 85186685--85186857 Score: 118
Period size: 3 Copynumber: 57.7 Consensus size: 3
85186675 AGTTTTATAT
* * * * *
85186685 TTA TTA TTA TTT TTA GTA TTA TTA TT- TCTG TTA TTA TTG TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
* * ** * *
85186730 CTTA TTA GTA TTG TTA TTA TTA TTA TTA CCA CTA TTA CTA TTA TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
85186776 TT- TTA TCA CTA TTG TCA TTA TTA -TA GTA TTA TTA GTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
85186822 CTA TTA TTC TTA TTA TCA TTA TTTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TT
85186858 TTTTTAAAAC
Statistics
Matches: 128, Mismatches: 36, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
2 5 0.04
3 117 0.91
4 6 0.05
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:85186743 original size:19 final size:18
Alignment explanation
Indices: 85186719--85186754 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
85186709 TTTCTGTTAT
85186719 TATTGTTACTACTTATTAG
1 TATTGTTACTA-TTATTAG
*
85186738 TATTGTTATTATTATTA
1 TATTGTTACTATTATTA
85186755 TTACCACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.28, C:0.06, G:0.08, T:0.58
Consensus pattern (18 bp):
TATTGTTACTATTATTAG
Found at i:85187024 original size:15 final size:14
Alignment explanation
Indices: 85186996--85187034 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
85186986 TTTATTCTTG
85186996 TCCTCATTATTATTA
1 TCCT-ATTATTATTA
*
85187011 TCTTATTATATATTA
1 TCCTATTAT-TATTA
85187026 TCCTATTAT
1 TCCTATTAT
85187035 GTAGCTATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.28, C:0.15, G:0.00, T:0.56
Consensus pattern (14 bp):
TCCTATTATTATTA
Found at i:85193685 original size:43 final size:45
Alignment explanation
Indices: 85193638--85193745 Score: 121
Period size: 43 Copynumber: 2.4 Consensus size: 45
85193628 AGCTACCAGC
**
85193638 CTTATCTCCTTGAGGTAGCAAGGAAGCAG-GCCGAGATTGTAG-T
1 CTTATCTCCTTGAGGTAGCAAGGAAGCAGAGCAAAGATTGTAGAT
* * * * **
85193681 CTTATCTTCTTGAGGTAACAAGTAAGTAGATTAAAGATTGTAGAT
1 CTTATCTCCTTGAGGTAGCAAGGAAGCAGAGCAAAGATTGTAGAT
*
85193726 CTTATCTCCTTGAGATAGCA
1 CTTATCTCCTTGAGGTAGCA
85193746 GTGGAGCAGA
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 25 0.48
44 9 0.17
45 18 0.35
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (45 bp):
CTTATCTCCTTGAGGTAGCAAGGAAGCAGAGCAAAGATTGTAGAT
Found at i:85193763 original size:45 final size:45
Alignment explanation
Indices: 85193638--85194074 Score: 116
Period size: 45 Copynumber: 9.8 Consensus size: 45
85193628 AGCTACCAGC
* * **
85193638 CTTATCTCCTTGAGGTAGCAAG-GAAGCAGGCCG-AGATTGTAG-T
1 CTTATCTCCTTGAGATAGC-AGTGGAGCAGATCGAAGATTGTAGAT
* * * * * **
85193681 CTTATCTTCTTGAGGTAACAAGT-AAGTAGATTAAAGATTGTAGAT
1 CTTATCTCCTTGAGATAGC-AGTGGAGCAGATCGAAGATTGTAGAT
*
85193726 CTTATCTCCTTGAGATAGCAGTGGAGCAGATCGAAGATGGT-GAAT
1 CTTATCTCCTTGAGATAGCAGTGGAGCAGATCGAAGATTGTAG-AT
* * ** *** *****
85193771 CTTATCT-TTTCGA-AGTTGCAAAGGAGCAGATTTTAGCCACCAG-T
1 CTTATCTCCTT-GAGA-TAGCAGTGGAGCAGATCGAAGATTGTAGAT
* * * * ** *
85193815 CTTATCTCCCTGAGGTAGCAAG-AGAGTAGGCCGAAGATTGTA-TT
1 CTTATCTCCTTGAGATAGC-AGTGGAGCAGATCGAAGATTGTAGAT
* * *
85193859 CTTATCTTCC-AGAGGTAGCAAG-GAAGCAGA-CTGAAGATTGTAGAT
1 CTTATC-TCCTTGAGATAGC-AGTGGAGCAGATC-GAAGATTGTAGAT
* * * * *
85193904 CTTATGTCCCTGAGATAGTAGTGGAGCAGATCAAAGATGGT-GAAT
1 CTTATCTCCTTGAGATAGCAGTGGAGCAGATCGAAGATTGTAG-AT
* * * ** ***** *
85193949 CTTATCTTCC-CGAGATAGCAGGGGAGTAGATTTAAGCCACCAG-C
1 CTTATC-TCCTTGAGATAGCAGTGGAGCAGATCGAAGATTGTAGAT
* * ** * * *
85193993 CTTATCTCCTTAAGGTAGCAAAGGAGCAG-GCTAAAGATTGTATAT
1 CTTATCTCCTTGAGATAGCAGTGGAGCAGATC-GAAGATTGTAGAT
* *
85194038 CTTATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGA
1 CTTATCTCCTTGAGATAGCAGTGGAGCAGATCGAAGA
85194075 CGACAAATCT
Statistics
Matches: 277, Mismatches: 92, Indels: 48
0.66 0.22 0.12
Matches are distributed among these distances:
43 29 0.10
44 98 0.35
45 143 0.52
46 7 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (45 bp):
CTTATCTCCTTGAGATAGCAGTGGAGCAGATCGAAGATTGTAGAT
Found at i:85193862 original size:44 final size:45
Alignment explanation
Indices: 85193814--85193917 Score: 122
Period size: 44 Copynumber: 2.3 Consensus size: 45
85193804 TAGCCACCAG
* * *
85193814 TCTTATCTCCCTGAGGTAGCAA-GAGAGTAGGCCGAAGATTGTA-T
1 TCTTATCTCCCTGAGGTAGCAAGGA-AGCAGACCGAAGATTGTAGA
* * *
85193858 TCTTATCTTCCAGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGA
1 TCTTATCTCCCTGAGGTAGCAAGGAAGCAGACCGAAGATTGTAGA
*
85193903 TCTTATGTCCCTGAG
1 TCTTATCTCCCTGAG
85193918 ATAGTAGTGG
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
44 35 0.71
45 14 0.29
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAGGTAGCAAGGAAGCAGACCGAAGATTGTAGA
Found at i:85193920 original size:178 final size:178
Alignment explanation
Indices: 85193546--85194044 Score: 614
Period size: 178 Copynumber: 2.8 Consensus size: 178
85193536 GTGAATTCAC
* * * * *
85193546 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGATGAATCTTATCTCCTT-GAA-
1 AGATCTTATCTCCATGAGATAGCAGTGGAGCAGATCGAAGATGGTGAATCTTATCT-TTTCGAAG
* *
85193609 TAGCAGGGGAATAGATTTTAGCTACCAGCCTTATCTCCTTGAGGTAGCAAG-GAAGCAGGCCG-A
65 TAGCAGGGGAGTAGATTTTAGCCACCAGCCTTATCTCCTTGAGGTAGCAAGAG-AGCAGGCCGAA
* ** * * *
85193672 GATTGTAGTCTTATCTTCTTGAGGTAACAAGTAAGTAGATTAAAGATTGT
129 GATTGTATTCTTATCTTCCAGAGGTAACAAGGAAGCAGACTAAAGATTGT
*
85193722 AGATCTTATCTCCTTGAGATAGCAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTTCGAAGT
1 AGATCTTATCTCCATGAGATAGCAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTTCGAAGT
* ** * * * *
85193787 TGCAAAGGAGCAGATTTTAGCCACCAGTCTTATCTCCCTGAGGTAGCAAGAGAGTAGGCCGAAGA
66 AGCAGGGGAGTAGATTTTAGCCACCAGCCTTATCTCCTTGAGGTAGCAAGAGAGCAGGCCGAAGA
* *
85193852 TTGTATTCTTATCTTCCAGAGGTAGCAAGGAAGCAGACTGAAGATTGT
131 TTGTATTCTTATCTTCCAGAGGTAACAAGGAAGCAGACTAAAGATTGT
* * * * **
85193900 AGATCTTATGTCCCTGAGATAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCG-AGA
1 AGATCTTATCTCCATGAGATAGCAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTTCGAAG-
* * **
85193964 TAGCAGGGGAGTAGATTTAAGCCACCAGCCTTATCTCCTTAAGGTAGCAA-AGGAGCAGGCTAAA
65 TAGCAGGGGAGTAGATTTTAGCCACCAGCCTTATCTCCTTGAGGTAGCAAGA-GAGCAGGCCGAA
85194028 GATTGTATATCTTATCT
129 GATTGTAT-TCTTATCT
85194045 CCCTAAGATA
Statistics
Matches: 276, Mismatches: 40, Indels: 11
0.84 0.12 0.03
Matches are distributed among these distances:
175 2 0.01
176 54 0.20
177 54 0.20
178 158 0.57
179 8 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (178 bp):
AGATCTTATCTCCATGAGATAGCAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTTCGAAGT
AGCAGGGGAGTAGATTTTAGCCACCAGCCTTATCTCCTTGAGGTAGCAAGAGAGCAGGCCGAAGA
TTGTATTCTTATCTTCCAGAGGTAACAAGGAAGCAGACTAAAGATTGT
Found at i:85194011 original size:134 final size:134
Alignment explanation
Indices: 85193871--85194178 Score: 420
Period size: 134 Copynumber: 2.3 Consensus size: 134
85193861 TATCTTCCAG
* * * *
85193871 AGGTAGC-AAGGAAGCAGACTGAAGATTGTAGATCTTATGTCCCTGAGATAGTAGTGGAGCAGAT
1 AGGTAGCAAAGG-AGCAGGCTGAAGATTGTAGATCTTATCTCCCTAAGATAGCAGTGGAGCAGAT
* *** **
85193935 CAAAGATGGTGAATCTTATCTTCCCGAGATAGCAGGGGAGTAGATTTAAGCCACCAGCCTTATCT
65 CAAAGACGACAAATCTTATCTTCCCGAGATAGCAGGGGAACAGATTTAAGCCACCAGCCTTATCT
85194000 CCTTA
130 CCTTA
* *
85194005 AGGTAGCAAAGGAGCAGGCTAAAGATTGTATATCTTATCTCCCTAAGATAGCAGTGGAGCAGATC
1 AGGTAGCAAAGGAGCAGGCTGAAGATTGTAGATCTTATCTCCCTAAGATAGCAGTGGAGCAGATC
* * * **
85194070 GAAGACGACAAATCTTATTTTTCTTAGATAGCAGGGGAACAGATTTAAGCCACCAGCCTTATCTC
66 AAAGACGACAAATCTTATCTTCCCGAGATAGCAGGGGAACAGATTTAAGCCACCAGCCTTATCTC
*
85194135 CTTG
131 CTTA
* *
85194139 AGGTAGCAAAGGAGTAGGCTGAAGATTGTAGATTTTATCT
1 AGGTAGCAAAGGAGCAGGCTGAAGATTGTAGATCTTATCT
85194179 TCCCGAGGAA
Statistics
Matches: 151, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
134 147 0.97
135 4 0.03
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (134 bp):
AGGTAGCAAAGGAGCAGGCTGAAGATTGTAGATCTTATCTCCCTAAGATAGCAGTGGAGCAGATC
AAAGACGACAAATCTTATCTTCCCGAGATAGCAGGGGAACAGATTTAAGCCACCAGCCTTATCTC
CTTA
Found at i:85194220 original size:223 final size:223
Alignment explanation
Indices: 85193947--85194401 Score: 671
Period size: 223 Copynumber: 2.0 Consensus size: 223
85193937 AAGATGGTGA
* *
85193947 ATCTTATCTTCCCGAGATAGCAGGGGAGTAGATTTAAGCCACCAGCCTTATCTCCTTAAGGTAGC
1 ATCTTATCTTCCCGAGATAGCAGGGAAGCAGATTTAAGCCACCAGCCTTATCTCCTTAAGGTAGC
* * * *
85194012 AAAGGAGCAGGCTAAAGATTGTATATCTTATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGACG
66 AAAGGAGCAGACTAAAGATTGTAGATCTTATCTCCCTAAGATAGCAGTGGAGCAGATCAAAGACA
* * * * *
85194077 ACAAATCTTAT-TTTTCTTAGATAGCAGGGGAACAGATTTAAGCCACCAGCCTTATCTCCTTGAG
131 ACAAATCTTATCTTCTC-AAGATAGCAGGAGAACAGATTTAAGCCACAAGCCTTATCTCCTTAAG
*
85194141 GTAGCAAAGGAGTAGGCTGAAGATTGTAG
195 GTAGCAAAGGAGCAGGCTGAAGATTGTAG
* * *
85194170 ATTTTATCTTCCCGAGGA-AGTAGGGAAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGGTAG
1 ATCTTATCTTCCCGA-GATAGCAGGGAAGCAGATTTAAGCCACCAGCCTTATCTCCTTAAGGTAG
* * * *
85194234 CAAAGGAGCAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGTAGTGGAGCAGATCAAAGAC
65 CAAAGGAGCAGACTAAAGATTGTAGATCTTATCTCCCTAAGATAGCAGTGGAGCAGATCAAAGAC
* * *
85194299 AACAAATCTTATCTTCTCAAGGTAGCAGGAGAGCATATTTAAGCCACAAGCCTTATCTCCTTAAG
130 AACAAATCTTATCTTCTCAAGATAGCAGGAGAACAGATTTAAGCCACAAGCCTTATCTCCTTAAG
85194364 GTAGCAAAGGAGCAGGCTGAAGATTGTAG
195 GTAGCAAAGGAGCAGGCTGAAGATTGTAG
*
85194393 GTCTTATCT
1 ATCTTATCT
85194402 CCCTAAAGTA
Statistics
Matches: 206, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
223 200 0.97
224 6 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (223 bp):
ATCTTATCTTCCCGAGATAGCAGGGAAGCAGATTTAAGCCACCAGCCTTATCTCCTTAAGGTAGC
AAAGGAGCAGACTAAAGATTGTAGATCTTATCTCCCTAAGATAGCAGTGGAGCAGATCAAAGACA
ACAAATCTTATCTTCTCAAGATAGCAGGAGAACAGATTTAAGCCACAAGCCTTATCTCCTTAAGG
TAGCAAAGGAGCAGGCTGAAGATTGTAG
Found at i:85194266 original size:45 final size:45
Alignment explanation
Indices: 85194127--85194274 Score: 122
Period size: 45 Copynumber: 3.3 Consensus size: 45
85194117 AGCCACCAGC
* *
85194127 CTTATCTCCTTGAGGTAGCAAAGGAGTAGGCTGAAGATTGTAGAT
1 CTTATCTCCTTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGAT
* * * * * * * ***** *
85194172 TTTATCTTCC-CGAGGAAG-TAGGGAAGCAGATTTAAGCCACCAG-C
1 CTTATC-TCCTTGAGGTAGCAAAGG-AGCAGACTGAAGATTGTAGAT
85194216 CTTATCTCCTTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGAT
1 CTTATCTCCTTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGAT
85194261 CTTATCTCCTTGAG
1 CTTATCTCCTTGAG
85194275 ATAGTAGTGG
Statistics
Matches: 70, Mismatches: 28, Indels: 10
0.65 0.26 0.09
Matches are distributed among these distances:
43 3 0.04
44 26 0.37
45 38 0.54
46 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (45 bp):
CTTATCTCCTTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGAT
Found at i:85194281 original size:89 final size:89
Alignment explanation
Indices: 85194095--85194291 Score: 285
Period size: 89 Copynumber: 2.2 Consensus size: 89
85194085 TATTTTTCTT
* * *
85194095 AGATAGCAGGGGAA-CAGATTTAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGTAGGCT
1 AGATAGTA-GGGAAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAGACT
*
85194159 GAAGATTGTAGATTTTATCTTCCCG
65 GAAGATTGTAGATCTTATCTTCCCG
85194184 AGGA-AGTAGGGAAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAGACT
1 A-GATAGTAGGGAAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAGACT
*
85194248 GAAGATTGTAGATCTTATC-TCCTTG
65 GAAGATTGTAGATCTTATCTTCC-CG
85194273 AGATAGTAGTGG-AGCAGAT
1 AGATAGTAG-GGAAGCAGAT
85194292 CAAAGACAAC
Statistics
Matches: 98, Mismatches: 5, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
88 10 0.10
89 84 0.86
90 4 0.04
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (89 bp):
AGATAGTAGGGAAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAGACTG
AAGATTGTAGATCTTATCTTCCCG
Found at i:85194473 original size:134 final size:134
Alignment explanation
Indices: 85194196--85194558 Score: 373
Period size: 134 Copynumber: 2.7 Consensus size: 134
85194186 GAAGTAGGGA
* *
85194196 AGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGAT
1 AGCAGATTTAAGCCACCAGCCTTATCTCCTTAAGGTAGCAAAGGAGCAGACTGAAGATTGTAGGT
** * *
85194261 CTTATCT-CCTTGAGATAGTAGTGGAGCAGATCAAAGACAACAAATCTTATCTTCTCAAGGTAGC
66 CTTATCTCCCTAAAG-TAGCAGTAGAGCAGATCAAAGACAACAAATCTTATCTTCTCAAGGTAGC
85194325 AGGAG
130 AGGAG
* * *
85194330 AGCATATTTAAGCCACAAGCCTTATCTCCTTAAGGTAGCAAAGGAGCAGGCTGAAGATTGTAGGT
1 AGCAGATTTAAGCCACCAGCCTTATCTCCTTAAGGTAGCAAAGGAGCAGACTGAAGATTGTAGGT
* * * ** *
85194395 CTTATCTCCCTAAAGTAGCAGTAGAGTAGATCGAAGACGATGAATCTTATC-T-TC-ATGTAGC-
66 CTTATCTCCCTAAAGTAGCAGTAGAGCAGATCAAAGACAACAAATCTTATCTTCTCAAGGTAGCA
85194456 GGAAATGG
131 GG--A--G
* * * * **
85194464 ATCAGATTTAAGTCACCAGTCTTATTTCCTTGAAGTTGTAGC---GGAGCAGACTGAAGATAATA
1 AGCAGATTTAAGCCACCAGCCTTATCTCCTT-AAG--GTAGCAAAGGAGCAGACTGAAGATTGTA
* * * *
85194526 GGTTTTATCTCCCTAAAGTTGTAGTGGAGCAGA
63 GGTCTTATCTCCCTAAAGTAGCAGTAGAGCAGA
85194559 CTGAAGATAG
Statistics
Matches: 192, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
130 2 0.01
131 6 0.03
132 3 0.02
133 1 0.01
134 167 0.87
135 8 0.04
137 5 0.03
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (134 bp):
AGCAGATTTAAGCCACCAGCCTTATCTCCTTAAGGTAGCAAAGGAGCAGACTGAAGATTGTAGGT
CTTATCTCCCTAAAGTAGCAGTAGAGCAGATCAAAGACAACAAATCTTATCTTCTCAAGGTAGCA
GGAG
Found at i:85194520 original size:357 final size:357
Alignment explanation
Indices: 85193870--85194535 Score: 903
Period size: 357 Copynumber: 1.9 Consensus size: 357
85193860 TTATCTTCCA
*
85193870 GAGGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATGTCCCTGAGATAGTAGTGGAGCAGAT
1 GAGGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATCTCCCTGAGATAGTAGTGGAGCAGAT
***** * * * *
85193935 CAAAGATGGTGAATCTTATCTTCCCGAGATAGCAGGGGAGTAGATTTAAGCCACCAGCCTTATCT
66 CAAAGACAACAAATCTTATCTTCCCAAGATAGCAGGAGAGCAGATTTAAGCCACAAGCCTTATCT
* *
85194000 CCTTAAGGTAGCAAAGGAGCAGGCTAAAGATTGTATATCTTATCTCCCTAAGATAGCAGTGGAGC
131 CCTTAAGGTAGCAAAGGAGCAGGCTAAAGATTGTAGATCTTATCTCCCTAAGATAGCAGTAGAGC
* *
85194065 AGATCGAAGACGACAAATCTTATTTTTCTTAGATAGCAGGGGAACAGATTTAAGCCACCAGCCTT
196 AGATCGAAGACGACAAATCTTATTCTTCATAGATAGCAGGGGAACAGATTTAAGCCACCAGCCTT
* * * **
85194130 ATCTCCTTGAGGTAGCAAAGGAGTAGGCTGAAGATTGTAGATTTTATCTTCCCGAGGAAGTAGGG
261 ATCTCCTTGAAGTAGCAAAGGAGCAGACTGAAGATAATAGATTTTATCTTCCCGAGGAAGTAGGG
85194195 AAGCAGATTTAAGCCACCAGCCTTATCTCCTT
326 AAGCAGATTTAAGCCACCAGCCTTATCTCCTT
*
85194227 GAGGTAGCAAAGG-AGCAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGTAGTGGAGCAGA
1 GAGGTAGC-AAGGAAGCAGACTGAAGATTGTAGATCTTATCTCCCTGAGATAGTAGTGGAGCAGA
* * *
85194291 TCAAAGACAACAAATCTTATCTTCTCAAGGTAGCAGGAGAGCATATTTAAGCCACAAGCCTTATC
65 TCAAAGACAACAAATCTTATCTTCCCAAGATAGCAGGAGAGCAGATTTAAGCCACAAGCCTTATC
* *
85194356 TCCTTAAGGTAGCAAAGGAGCAGGCTGAAGATTGTAGGTCTTATCTCCCTAA-AGTAGCAGTAGA
130 TCCTTAAGGTAGCAAAGGAGCAGGCTAAAGATTGTAGATCTTATCTCCCTAAGA-TAGCAGTAGA
* ** * *
85194420 GTAGATCGAAGACGATGAATCTTA-TCTTCAT-G-TAGC-GGAAATGGATCAGATTTAAGTCACC
194 GCAGATCGAAGACGACAAATCTTATTCTTCATAGATAGCAGG----GGAACAGATTTAAGCCACC
* * * * ** *
85194481 AGTCTTATTTCCTTGAAGTTGTAGCGGAGCAGACTGAAGATAATAGGTTTTATCT
255 AGCCTTATCTCCTTGAAGTAGCAAAGGAGCAGACTGAAGATAATAGATTTTATCT
85194536 CCCTAAAGTT
Statistics
Matches: 266, Mismatches: 37, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
353 2 0.01
354 4 0.02
355 1 0.00
356 6 0.02
357 249 0.94
358 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (357 bp):
GAGGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATCTCCCTGAGATAGTAGTGGAGCAGAT
CAAAGACAACAAATCTTATCTTCCCAAGATAGCAGGAGAGCAGATTTAAGCCACAAGCCTTATCT
CCTTAAGGTAGCAAAGGAGCAGGCTAAAGATTGTAGATCTTATCTCCCTAAGATAGCAGTAGAGC
AGATCGAAGACGACAAATCTTATTCTTCATAGATAGCAGGGGAACAGATTTAAGCCACCAGCCTT
ATCTCCTTGAAGTAGCAAAGGAGCAGACTGAAGATAATAGATTTTATCTTCCCGAGGAAGTAGGG
AAGCAGATTTAAGCCACCAGCCTTATCTCCTT
Found at i:85194579 original size:45 final size:45
Alignment explanation
Indices: 85194483--85194781 Score: 212
Period size: 45 Copynumber: 6.7 Consensus size: 45
85194473 AAGTCACCAG
* * * * ** *
85194483 TCTTATTTCCTTGAAGTTGTAGCGGAGCAGACTGAAGATAATAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
* * *
85194528 TTTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
* * * ** *
85194573 TCTTATCTCCTTGAAGTTGCAGCGAAATAGA-TCGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAGCAGA
* * * * **
85194618 CCTTATCTCTCTGAGGTTGCAGTAGAGCAGGTTGAAG-TAGCA-A
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
* * *
85194661 GTCTTATCTCCTTGAAGTGGCAGTGGAGCAGACTGAAAATAGCAGA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
* * * * **
85194707 TCATATCTTCCTGAAGTTACAGCGGAATAGA-TCGAAGATAGCA-A
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAGCAGA
* * * *
85194751 ACTTTATCTCTCTGAAGTTGTAGTAGAGCAG
1 TC-TTATCTCCCTGAAGTTGCAGTGGAGCAG
85194782 GTTGAAATTA
Statistics
Matches: 192, Mismatches: 55, Indels: 14
0.74 0.21 0.05
Matches are distributed among these distances:
43 1 0.01
44 37 0.19
45 152 0.79
46 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
Found at i:85194668 original size:134 final size:135
Alignment explanation
Indices: 85194530--85194823 Score: 421
Period size: 134 Copynumber: 2.2 Consensus size: 135
85194520 ATAATAGGTT
* * * * *
85194530 TTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATAGCAGATCTTATC-TCCTTGAAGTTGCA
1 TTATCTCCTTAAAGTTGCAGTGGAGCAGACTGAAAATAGCAGATCATATCTTCC-TGAAGTTACA
* *
85194594 GCGAAATAGATCGAAGATAGCAAACCTTATCTCTCTGAGGTTGCAGTAGAGCAGGTTG-AAGTAG
65 GCGAAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAAGTAC
85194658 CAAGTC
130 CAAGTC
* *
85194664 TTATCTCCTTGAAGTGGCAGTGGAGCAGACTGAAAATAGCAGATCATATCTTCCTGAAGTTACAG
1 TTATCTCCTTAAAGTTGCAGTGGAGCAGACTGAAAATAGCAGATCATATCTTCCTGAAGTTACAG
* * * *
85194729 CGGAATAGATCGAAGATAGCAAACTTTATCTCTCTGAAGTTGTAGTAGAGCAGGTTGAAATTACC
66 CGAAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAAGTACC
*
85194794 AATTC
131 AAGTC
* *
85194799 TTATCTCCTTAAAGTTTCAGCGGAG
1 TTATCTCCTTAAAGTTGCAGTGGAG
85194824 TAGATCGAAG
Statistics
Matches: 140, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
134 107 0.76
135 33 0.24
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (135 bp):
TTATCTCCTTAAAGTTGCAGTGGAGCAGACTGAAAATAGCAGATCATATCTTCCTGAAGTTACAG
CGAAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAAGTACC
AAGTC
Found at i:85194780 original size:90 final size:90
Alignment explanation
Indices: 85194664--85194833 Score: 193
Period size: 90 Copynumber: 1.9 Consensus size: 90
85194654 GTAGCAAGTC
* * *
85194664 TTATCTCCTTGAAGTGGCAGTGGAGCAGACTGAAAATAGCAGA-TCATATCTTCC-TGAAGTTAC
1 TTATCTCCTTGAAGTGGCAGTAGAGCAGACTGAAAATACCA-ATTCATATC-TCCTTAAAGTTAC
85194727 AGCGGAATAGATCGAAGATAGCAAACT
64 AGCGGAATAGATCGAAGATAGCAAACT
* * ** * * *
85194754 TTATCT-CTCTGAAGTTGTAGTAGAGCAGGTTGAAATTACCAATTCTTATCTCCTTAAAGTTTCA
1 TTATCTCCT-TGAAGTGGCAGTAGAGCAGACTGAAAATACCAATTCATATCTCCTTAAAGTTACA
*
85194818 GCGGAGTAGATCGAAG
65 GCGGAATAGATCGAAG
85194834 CTAAAAATCT
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
89 6 0.09
90 60 0.91
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (90 bp):
TTATCTCCTTGAAGTGGCAGTAGAGCAGACTGAAAATACCAATTCATATCTCCTTAAAGTTACAG
CGGAATAGATCGAAGATAGCAAACT
Found at i:85196747 original size:5 final size:5
Alignment explanation
Indices: 85196737--85196766 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
85196727 TAGGAAGATA
*
85196737 TTATT TTATT TTATT TTATT TTAAT TTATT
1 TTATT TTATT TTATT TTATT TTATT TTATT
85196767 AAATTAGCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:85197267 original size:3 final size:3
Alignment explanation
Indices: 85197259--85197394 Score: 87
Period size: 3 Copynumber: 46.0 Consensus size: 3
85197249 AGTTTTATAT
* * * * * * * *
85197259 TTA TTA TTA TTT TTA GTA TTA TTA TTT TTG TTA TTA CTG TTA CTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * *
85197307 CTA CTA CTA TTA TTA TTA TTA TTA TTA TT- TTA TCA CTA CTG TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
85197354 TTA TTA -TA GTA TTA TTA GTA TTA TTA TTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
85197395 CTATAATTTT
Statistics
Matches: 105, Mismatches: 26, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
2 4 0.04
3 101 0.96
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:85197493 original size:25 final size:25
Alignment explanation
Indices: 85197463--85197513 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
85197453 TCACTTTCAA
85197463 TTTAAATTAAATTCTCGCTAGAATT
1 TTTAAATTAAATTCTCGCTAGAATT
85197488 TTTAAATTAAATTCTCGCTAGAATT
1 TTTAAATTAAATTCTCGCTAGAATT
85197513 T
1 T
85197514 CCTTTGTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (25 bp):
TTTAAATTAAATTCTCGCTAGAATT
Found at i:85197594 original size:15 final size:14
Alignment explanation
Indices: 85197566--85197604 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
85197556 TTTATTCTGG
85197566 TCCTCATTATTATTA
1 TCCT-ATTATTATTA
*
85197581 TCTTATTATATATTA
1 TCCTATTAT-TATTA
85197596 TCCTATTAT
1 TCCTATTAT
85197605 GTAGCTATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.28, C:0.15, G:0.00, T:0.56
Consensus pattern (14 bp):
TCCTATTATTATTA
Found at i:85219929 original size:70 final size:69
Alignment explanation
Indices: 85219855--85220059 Score: 187
Period size: 69 Copynumber: 3.0 Consensus size: 69
85219845 AGAGTTTTTT
* ** *** * *
85219855 CAACTTCAACATGGTGAGTGGAAGATGCATTTCGAACTTTGCAGCTTCAATATGGTAGGAAGAAC
1 CAACTTCAACATGGTGAGAGGAAGACCCATTTCGAACTTTGCAAAATCAACATGATAGGAAGAA-
85219920 CCTTA
65 CCTTA
* * * * *
85219925 CAACTTCAACATGGCGAGAGGAGGGCCCATTTTGAATTTTGCAAAATCAACATGATAGGAAGAAC
1 CAACTTCAACATGGTGAGAGGAAGACCCATTTCGAACTTTGCAAAATCAACATGATAGGAAGAAC
*
85219990 CTTG
66 CTTA
* ** * * * * *
85219994 CAACTTCAACATGATGAGAGG-AGAACAAATTTCAAACTTTGCAACATGAACATGACAAGAAGAA
1 CAACTTCAACATGGTGAGAGGAAG-ACCCATTTCGAACTTTGCAAAATCAACATGATAGGAAGAA
85220058 CC
65 CC
85220060 CTTTCAAATT
Statistics
Matches: 107, Mismatches: 27, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
68 1 0.01
69 55 0.51
70 51 0.48
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (69 bp):
CAACTTCAACATGGTGAGAGGAAGACCCATTTCGAACTTTGCAAAATCAACATGATAGGAAGAAC
CTTA
Found at i:85220252 original size:70 final size:70
Alignment explanation
Indices: 85219882--85220320 Score: 230
Period size: 70 Copynumber: 6.3 Consensus size: 70
85219872 GTGGAAGATG
* * * * * *
85219882 CATTTCGAACTTTGCAGCTTCAATATGG-TAGGAAGAACCCTTACAACTTCAACATGGCGAGAGG
1 CATTTTGAACTTTGCAACATCAACA-GGATAGGAAGAACCCTTACAACTTCAACATGGAGAAAGG
85219946 AGGGCC
65 AGGGCC
* * * * *
85219952 CATTTTGAATTTTGCAAAATCAACATGATAGGAAGAA-CCTTGCAACTTCAACAT-GATGAGAGG
1 CATTTTGAACTTTGCAACATCAACAGGATAGGAAGAACCCTTACAACTTCAACATGGA-GAAAGG
** *
85220015 AGAACA
65 AGGGCC
* ** * * * * * * * * *
85220021 AATTTCAAACTTTGCAACATGAACATGACAAGAAGAACCCTTTCAAATTTAATATGGTA-ATAGG
1 CATTTTGAACTTTGCAACATCAACAGGATAGGAAGAACCCTTACAACTTCAACATGG-AGAAAGG
85220085 AGGG--
65 AGGGCC
* * * * * * *** * * * * * *
85220089 CTTTAATTGAACTATGTATCATTAACATGG-CA-GATAGAAGTTTTGCACCTTTAACGTGGTGAG
1 CATT--TTGAACTTTGCAACATCAACA-GGATAGGA-AGAACCCTTACAACTTCAACATGGAGAA
* *
85220152 GGGAGGACC
62 AGGAGGGCC
* * ** * * *
85220161 CATTTTGGACTTTACAACATCAGTAGGGTGGGAAGAACCCTTACAACTTTAACAT-GACGAAAGG
1 CATTTTGAACTTTGCAACATCAACAGGATAGGAAGAACCCTTACAACTTCAACATGGA-GAAAGG
85220225 AGGGCC
65 AGGGCC
* * * *
85220231 CATTTTGAACTTTGCAGCATCAACATGATAGGAAGAGCCCTTGCAACTTCAACATGGAGAAAGGA
1 CATTTTGAACTTTGCAACATCAACAGGATAGGAAGAACCCTTACAACTTCAACATGGAGAAAGGA
*
85220296 GGGCT
66 GGGCC
* *
85220301 CACTTCGAACTTTGCAACAT
1 CATTTTGAACTTTGCAACAT
85220321 TGTGGCTAGA
Statistics
Matches: 269, Mismatches: 84, Indels: 32
0.70 0.22 0.08
Matches are distributed among these distances:
68 3 0.01
69 60 0.22
70 196 0.73
71 6 0.02
72 4 0.01
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (70 bp):
CATTTTGAACTTTGCAACATCAACAGGATAGGAAGAACCCTTACAACTTCAACATGGAGAAAGGA
GGGCC
Found at i:85222573 original size:47 final size:47
Alignment explanation
Indices: 85222515--85222636 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
85222505 ACATTGGCAC
*
85222515 TAAGACAAGGATACCATGTATGACCATGTTTAGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGG
*
85222562 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGG
* *
85222609 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
85222637 CCAATGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGG
Found at i:85222744 original size:55 final size:53
Alignment explanation
Indices: 85222623--85222808 Score: 207
Period size: 55 Copynumber: 3.5 Consensus size: 53
85222613 ATAAGGATAT
* * ** *
85222623 CATGTAAGACCATGCCAATG-CATGGCATTGATAAGTTCTATAAGGCGAAGAAAT
1 CATGTAAGACCATGTCAA-GACATGGCATTGATGAGTTCTATAAGGC-AAGGTAC
*
85222677 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGTAC
* * *
85222732 CATGTAAGACCAT-TCCAAGGCATGACATTGGTGAGTTC-ATAAGGCAAGGATAC
1 CATGTAAGACCATGT-CAAGACATGGCATTGATGAGTTCTATAAGGCAAGG-TAC
*
85222785 CACGTAAGACCATGTCAAGACATG
1 CATGTAAGACCATGTCAAGACATG
85222809 AAAATGGTAA
Statistics
Matches: 114, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
52 4 0.04
53 30 0.26
54 36 0.32
55 44 0.39
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGTAC
Found at i:85229094 original size:27 final size:28
Alignment explanation
Indices: 85229050--85229183 Score: 143
Period size: 27 Copynumber: 4.9 Consensus size: 28
85229040 CATTAAATGC
* * *
85229050 GAGGTAGTCCA-CTAGGACATTAAACAAA
1 GAGGTAGTCCATC-GGGACAATAAACAAT
85229078 GA-GTAGTCCATCGGGACAATAAAC-AT
1 GAGGTAGTCCATCGGGACAATAAACAAT
*
85229104 GAGGTAGTCCATCGGAACAATAAAC-AT
1 GAGGTAGTCCATCGGGACAATAAACAAT
* *
85229131 GAGGTAGTCCATTGGGACAATAAAC-AC
1 GAGGTAGTCCATCGGGACAATAAACAAT
* * *
85229158 GGGGTAGTCCATCGAGACATTAAACA
1 GAGGTAGTCCATCGGGACAATAAACA
85229184 TAAACATTAA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.03
27 86 0.93
28 3 0.03
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.19
Consensus pattern (28 bp):
GAGGTAGTCCATCGGGACAATAAACAAT
Found at i:85229184 original size:54 final size:55
Alignment explanation
Indices: 85229027--85229186 Score: 184
Period size: 54 Copynumber: 2.9 Consensus size: 55
85229017 GATATCAGTA
* * ** *
85229027 TAGTCCGTTGGGACATTAAATGCGAGGTAGTCCA-CTAGGACATTAAACA-AAGAG
1 TAGTCCATTGGGACAATAAACACGAGGTAGTCCATCGA-GACATTAAACATAAGAG
* * * *
85229081 TAGTCCATCGGGACAATAAACATGAGGTAGTCCATCG-GAACAATAAACATGAG-G
1 TAGTCCATTGGGACAATAAACACGAGGTAGTCCATCGAG-ACATTAAACATAAGAG
*
85229135 TAGTCCATTGGGACAATAAACACGGGGTAGTCCATCGAGACATTAAACATAA
1 TAGTCCATTGGGACAATAAACACGAGGTAGTCCATCGAGACATTAAACATAA
85229187 ACATTAAATG
Statistics
Matches: 88, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
53 1 0.01
54 83 0.94
55 4 0.05
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (55 bp):
TAGTCCATTGGGACAATAAACACGAGGTAGTCCATCGAGACATTAAACATAAGAG
Found at i:85229283 original size:121 final size:121
Alignment explanation
Indices: 85229066--85229285 Score: 268
Period size: 121 Copynumber: 1.8 Consensus size: 121
85229056 GTCCACTAGG
* * *
85229066 ACATTAAACAAAGAGTAGTCCATCGGGACAATAAACATGAGGTAGTCCATCGGAACAATAAACAT
1 ACATTAAACAAAGAGTAGTCCACCGAGACAATAAACATGAGGTAGTCCATCGGAACAATAAACAG
* *
85229131 GAGGTAGTCCATTGGGACAATAAACACGGGGTAGTCCATCGAGACATTAAACATAA
66 GAGGTAGCCCATCGGGACAATAAACACGGGGTAGTCCATCGAGACATTAAACATAA
* * * *
85229187 ACATTAAATGAAAG-GTAGTCTACCGAGACAATAAATAT-AGGATCGTCCATCAGGAA-AATAAA
1 ACATTAAA-CAAAGAGTAGTCCACCGAGACAATAAACATGAGG-TAGTCCATC-GGAACAATAAA
* **
85229249 CACGGA-GTAGCCCGTCGGGACAATAAACGTGGGGTAG
63 CA-GGAGGTAGCCCATCGGGACAATAAACACGGGGTAG
85229286 CCTGCCAGGA
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
120 3 0.04
121 70 0.84
122 10 0.12
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.19
Consensus pattern (121 bp):
ACATTAAACAAAGAGTAGTCCACCGAGACAATAAACATGAGGTAGTCCATCGGAACAATAAACAG
GAGGTAGCCCATCGGGACAATAAACACGGGGTAGTCCATCGAGACATTAAACATAA
Found at i:85229403 original size:27 final size:27
Alignment explanation
Indices: 85229371--85229437 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 27
85229361 GGCTTGTCTG
85229371 CCAAGACATTAAACAAAGGGTAGTCCA
1 CCAAGACATTAAACAAAGGGTAGTCCA
* * * * *
85229398 CTAAGACAATAAA-TAGGGGTAGTCTA
1 CCAAGACATTAAACAAAGGGTAGTCCA
*
85229424 CCGAGACATTAAAC
1 CCAAGACATTAAAC
85229438 GTGGGATGGA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
26 20 0.65
27 11 0.35
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.18
Consensus pattern (27 bp):
CCAAGACATTAAACAAAGGGTAGTCCA
Found at i:85240254 original size:27 final size:27
Alignment explanation
Indices: 85240171--85240267 Score: 95
Period size: 27 Copynumber: 3.6 Consensus size: 27
85240161 CTTTAATCAT
* * *
85240171 TTGCCACAAAGGCTTTCCTTTCCTTATA
1 TTGCCACAAAGGCTTTCATTT-CATAGA
* * * *
85240199 TTGCCACAAAGGATTCCATTTGATCGA
1 TTGCCACAAAGGCTTTCATTTCATAGA
*
85240226 TTGCCACATAGGCTTTCATTTCATAGA
1 TTGCCACAAAGGCTTTCATTTCATAGA
**
85240253 TTATCACAAAGGCTT
1 TTGCCACAAAGGCTT
85240268 CTATTTTTCT
Statistics
Matches: 54, Mismatches: 15, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
27 36 0.67
28 18 0.33
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (27 bp):
TTGCCACAAAGGCTTTCATTTCATAGA
Found at i:85258859 original size:26 final size:26
Alignment explanation
Indices: 85258830--85258937 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
85258820 TGGTACAAAT
*
85258830 TGATAATGGGTTTGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
85258856 TGATAATGGATTAGGAAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85258882 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85258908 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85258934 TGAT
1 TGAT
85258938 GGGAATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85265149 original size:25 final size:25
Alignment explanation
Indices: 85265120--85265171 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
85265110 AAGAATAATT
**
85265120 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
85265145 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
85265170 TG
1 TG
85265172 TCAAGGCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:85270679 original size:16 final size:16
Alignment explanation
Indices: 85270658--85270688 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85270648 CATTTTATTT
*
85270658 ATATTAGGATAATTAA
1 ATATTAAGATAATTAA
85270674 ATATTAAGATAATTA
1 ATATTAAGATAATTA
85270689 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATTAAGATAATTAA
Found at i:85271477 original size:18 final size:18
Alignment explanation
Indices: 85271448--85271482 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
85271438 TATTTTTTCT
85271448 TATTTCAATTTCTGCAATC
1 TATTTCAATTTC-GCAATC
85271467 TATTT-AATTTCGCAAT
1 TATTTCAATTTCGCAAT
85271483 TTCAATTCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 6 0.38
19 5 0.31
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.49
Consensus pattern (18 bp):
TATTTCAATTTCGCAATC
Found at i:85284650 original size:20 final size:20
Alignment explanation
Indices: 85284625--85284696 Score: 126
Period size: 20 Copynumber: 3.6 Consensus size: 20
85284615 GAGGCAAAGC
85284625 ACACGCCCGTGTGCTTCGGG
1 ACACGCCCGTGTGCTTCGGG
85284645 ACACGCCCGTGTGCTTCGGG
1 ACACGCCCGTGTGCTTCGGG
*
85284665 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTCGGG
*
85284685 ACATGCCCGTGT
1 ACACGCCCGTGT
85284697 CCCTTACTCG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.11, C:0.33, G:0.33, T:0.22
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTCGGG
Found at i:85287921 original size:42 final size:42
Alignment explanation
Indices: 85287875--85288026 Score: 151
Period size: 42 Copynumber: 3.5 Consensus size: 42
85287865 GTTATCATGT
*
85287875 AAGACCATATTTGGGATATGGCGTTGATATGAGATTTCGTGCAAGACC
1 AAGACCATATCTGGGATATGGCGTTGATATGAGATTTCGT----G--C
*
85287923 AAGACCATATCTGGGATATAGCGTTGATATGAGATTTCGTGC
1 AAGACCATATCTGGGATATGGCGTTGATATGAGATTTCGTGC
** * * * * **
85287965 AAGACCACGTCTGGGACATGGCGTAGAAATGAGAATTCGTAT
1 AAGACCATATCTGGGATATGGCGTTGATATGAGATTTCGTGC
*
85288007 AAGACTATATCTGGGATATG
1 AAGACCATATCTGGGATATG
85288027 ACATCGATGT
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 50 0.56
44 1 0.01
48 38 0.43
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (42 bp):
AAGACCATATCTGGGATATGGCGTTGATATGAGATTTCGTGC
Found at i:85287927 original size:48 final size:48
Alignment explanation
Indices: 85287875--85287971 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
85287865 GTTATCATGT
* *
85287875 AAGACCATATTTGGGATATGGCGTTGATATGAGATTTCGTGCAAGACC
1 AAGACCATATCTGGGATATAGCGTTGATATGAGATTTCGTGCAAGACC
85287923 AAGACCATATCTGGGATATAGCGTTGATATGAGATTTCGTGCAAGACC
1 AAGACCATATCTGGGATATAGCGTTGATATGAGATTTCGTGCAAGACC
85287971 A
1 A
85287972 CGTCTGGGAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (48 bp):
AAGACCATATCTGGGATATAGCGTTGATATGAGATTTCGTGCAAGACC
Found at i:85292379 original size:47 final size:46
Alignment explanation
Indices: 85292267--85292538 Score: 211
Period size: 47 Copynumber: 5.8 Consensus size: 46
85292257 ATTCGTGTGT
*
85292267 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCAAATT-ATA-A
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGG-C--ATTGAGATA
* *
85292313 GAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAGAT-A
* * * * *
85292361 GGGCTAGTGTAAGA-CATGTCTAGGACATGCATCGACCTCGAGACATA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAG--ATA
* *
85292408 -AGCCAGTGTAAGA-CATGTCAGGGACATGCATCGGC-TATGAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCAT-TGAGAT-A
* * *
85292453 TAG-TCAATGTAAGACCATGTCTGGGACATGGCATTGGC-TTGAGATA
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAGATA
* * * *
85292499 TGAGCAAGTGTAAGACCGTTTCTAGGACATGGCATCGGCA
1 -GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCA
85292539 CCTTACCTTA
Statistics
Matches: 183, Mismatches: 27, Indels: 30
0.76 0.11 0.12
Matches are distributed among these distances:
44 2 0.01
45 5 0.03
46 69 0.38
47 78 0.43
48 29 0.16
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAGATA
Found at i:85292523 original size:140 final size:141
Alignment explanation
Indices: 85292272--85292535 Score: 347
Period size: 140 Copynumber: 1.9 Consensus size: 141
85292262 TGTGTGAGCT
* * *
85292272 AGTGTAAGACATGTCTGGGACATGCATCGGCCAAATTATAAGAGCCAGTATAAGACCATGTCTGG
1 AGTGTAAGACATGTCAGGGACATGCATCGGCCAAATGATAAGAGCCAATATAAGACCATGTCTGG
* *
85292337 GACATGGCATCGGCATTGAGATGAGGGCTAGTGTAAGACATGTCTAGGACAT-GCATCGACCTCG
66 GACATGGCATCGGCATTGAGATGAGAGCAAGTGTAAGACATGTCTAGGACATGGCATCGACCTCG
85292401 AGACATAAGCC
131 AGACATAAGCC
* * * * * *
85292412 AGTGTAAGACATGTCAGGGACATGCATCGGCTATGA-GATGATAGTCAATGTAAGACCATGTCTG
1 AGTGTAAGACATGTCAGGGACATGCATCGGCCA-AATGATAAGAGCCAATATAAGACCATGTCTG
* * *
85292476 GGACATGGCATTGGC-TTGAGAT-ATGAGCAAGTGTAAGACCGTTTCTAGGACATGGCATCG
65 GGACATGGCATCGGCATTGAGATGA-GAGCAAGTGTAAGA-CATGTCTAGGACATGGCATCG
85292536 GCACCTTACC
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
138 1 0.01
139 19 0.18
140 79 0.75
141 7 0.07
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCAGGGACATGCATCGGCCAAATGATAAGAGCCAATATAAGACCATGTCTGG
GACATGGCATCGGCATTGAGATGAGAGCAAGTGTAAGACATGTCTAGGACATGGCATCGACCTCG
AGACATAAGCC
Found at i:85294098 original size:46 final size:47
Alignment explanation
Indices: 85293984--85294111 Score: 143
Period size: 47 Copynumber: 2.7 Consensus size: 47
85293974 TGTGTGTGCT
* * * *
85293984 AGTGTAAGACATGTCTGAGACATGCATCGGCTACATTATGAAATGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACATGACGAAATGCC
* * ** *
85294031 AGTGTAAGACAAGTCTAGGACATGCATCGGCATTGA-GACGAGA-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-TACATGACGAAATGCC
*
85294077 AGTGTAAGACATGTCTGGGACATGCATCGACTACA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACA
85294112 AGATGTGTTA
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
45 2 0.03
46 30 0.45
47 32 0.48
48 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACATGACGAAATGCC
Found at i:85303925 original size:44 final size:44
Alignment explanation
Indices: 85303859--85303947 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
85303849 GATTTGTCAG
*
85303859 CACCTCTACATCTCATCACTAGTCCCACCTCGCGAACCATCCAT
1 CACCTCCACATCTCATCACTAGTCCCACCTCGCGAACCATCCAT
* *
85303903 CACCTCCACATCTCATCGCTAGTCCCACCTCGTGAACCATCCAT
1 CACCTCCACATCTCATCACTAGTCCCACCTCGCGAACCATCCAT
85303947 C
1 C
85303948 GATGAAGATG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.24, C:0.46, G:0.08, T:0.22
Consensus pattern (44 bp):
CACCTCCACATCTCATCACTAGTCCCACCTCGCGAACCATCCAT
Found at i:85307582 original size:600 final size:597
Alignment explanation
Indices: 85306440--85307621 Score: 2186
Period size: 600 Copynumber: 2.0 Consensus size: 597
85306430 GAATAGACCC
*
85306440 TGTCTAAGAGTACATTTGTCATAATTAAGGCGAGTTGTTTGCACGCCTAGACATAGGGTGACAAA
1 TGTCTAAGAGTACATTTGTCATAATTAAGGCGAGTTGTTTGCACACCTAGACATAGGGTGACAAA
85306505 ATTTTACCGGATTAGGGTGAAACCTAATAAGGGGATCCATAGATCGAGTTAATGCAACCCTAGGG
66 ATTTTACCGGATTAGGGTGAAACCTAATAAGGGGATCCATAGATCGAGTTAATGCAACCCTAGGG
*
85306570 TGTTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTGAATAGGG
131 TGTTAATTAGAGAAAAGCCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTGAATAGGG
85306635 ATAATAACATAACTTAGGGATCTCTACGGAACAAGTTAATAATAAATCGTCGATTCGGAGCCAGA
196 ATAATAACATAACTTAGGGATCTCTACGGAACAAGTTAATAATAAATCGTCGATTCGGAGCCAGA
*
85306700 ATAACAAGTACAGTCTAAGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATCGTTTTCCAAAAG
261 ATAACAAGTACAGTCTAAGTGGATTTTTCCTTAGGTATTGTATTAATTCAATCGTTTTCCAAAAG
*
85306765 TAATCCCCCAATTCCATTCTCTGTGAATTCTTAGATTAGTTAATTAGTTAGTTAAAACAAAACCC
326 TAATCCCCCAATTCAATTCTCTGTGAATTCTTAGATTAGTTAATTAGTTAGTTAAAACAAAACCC
85306830 CCTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTACTACTTTTAGTTCCTTTGGGTTCG
391 CCTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTACTACTTTTAGTTCCTTTGGGTTCG
* * * *
85306895 ACAATCCGATCTTGCTAAAACTATACTATTGTTCAATAGGTACACTTGCTTGCATCGTGATAATA
456 ACAATCAGATCTTGCTAAAACTATACTACTGTTCAATAAGTACACTTGCTTGCATCATGATAATA
* **
85306960 GTTAGTTTCAAGAATGATTAATTATAAATATTTAAAACTTATCACACAAAATCGCGCGATCAAGT
521 GTTAGTTTCAAAAACAATTAATTATAAATATTTAAAACTTATCACACAAAATCGCGCGATCAAGT
85307025 TTTTGGCGCCGT
586 TTTTGGCGCCGT
85307037 TGTCTAAGAGTACATTTGTCATAATTAAGGCGAGTTGTTTGCACACCTAGACATAGGGTGACAAA
1 TGTCTAAGAGTACATTTGTCATAATTAAGGCGAGTTGTTTGCACACCTAGACATAGGGTGACAAA
85307102 ATTTTACCGGATTAGGGTGAAACCTAATAAGGGGATCCATAGATCGAGTTAATGCAACCCTAGGG
66 ATTTTACCGGATTAGGGTGAAACCTAATAAGGGGATCCATAGATCGAGTTAATGCAACCCTAGGG
85307167 TGTTAATTAGAGAAAAGCCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTGAATAGGG
131 TGTTAATTAGAGAAAAGCCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTGAATAGGG
85307232 ATAATAACATAACTTAGGGATCTCTACGGAACAAGTTGAATAAATAAATCGTCCGATTCGGAGCC
196 ATAATAACATAACTTAGGGATCTCTACGGAACAAGTT-AAT-AATAAATCGT-CGATTCGGAGCC
*
85307297 AGAATAACAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTATTAATTCAATCGTTTTCCAA
258 AGAATAACAAGTACAGTCTAAGTGGATTTTTCCTTAGGTATTGTATTAATTCAATCGTTTTCCAA
85307362 AAGTAATCCCCCAATTCAATTCTCTGTGAATTCTTAGATTAGTTAATTAGTTAGTTAAAACAAAA
323 AAGTAATCCCCCAATTCAATTCTCTGTGAATTCTTAGATTAGTTAATTAGTTAGTTAAAACAAAA
*
85307427 CCCCCTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCTTTGGGT
388 CCCCCTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTACTACTTTTAGTTCCTTTGGGT
*
85307492 TCGACAATCTAG-TCTTGCTAAAACTATACTACTGTTCGATAAGTACACTTGCTTGCATCATGAT
453 TCGACAATC-AGATCTTGCTAAAACTATACTACTGTTCAATAAGTACACTTGCTTGCATCATGAT
*
85307556 AATAGTTAGTTTCAAAAACAATTAATTATAAATATTTAAAACTTATCACACAAAATCGTGCGATC
517 AATAGTTAGTTTCAAAAACAATTAATTATAAATATTTAAAACTTATCACACAAAATCGCGCGATC
85307621 A
582 A
85307622 GCTATGGTCG
Statistics
Matches: 566, Mismatches: 15, Indels: 5
0.97 0.03 0.01
Matches are distributed among these distances:
597 230 0.41
598 3 0.01
599 10 0.02
600 322 0.57
601 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Consensus pattern (597 bp):
TGTCTAAGAGTACATTTGTCATAATTAAGGCGAGTTGTTTGCACACCTAGACATAGGGTGACAAA
ATTTTACCGGATTAGGGTGAAACCTAATAAGGGGATCCATAGATCGAGTTAATGCAACCCTAGGG
TGTTAATTAGAGAAAAGCCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTGAATAGGG
ATAATAACATAACTTAGGGATCTCTACGGAACAAGTTAATAATAAATCGTCGATTCGGAGCCAGA
ATAACAAGTACAGTCTAAGTGGATTTTTCCTTAGGTATTGTATTAATTCAATCGTTTTCCAAAAG
TAATCCCCCAATTCAATTCTCTGTGAATTCTTAGATTAGTTAATTAGTTAGTTAAAACAAAACCC
CCTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTACTACTTTTAGTTCCTTTGGGTTCG
ACAATCAGATCTTGCTAAAACTATACTACTGTTCAATAAGTACACTTGCTTGCATCATGATAATA
GTTAGTTTCAAAAACAATTAATTATAAATATTTAAAACTTATCACACAAAATCGCGCGATCAAGT
TTTTGGCGCCGT
Found at i:85317122 original size:49 final size:49
Alignment explanation
Indices: 85317053--85317532 Score: 772
Period size: 47 Copynumber: 10.1 Consensus size: 49
85317043 GAAATGATAG
85317053 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
85317102 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
85317149 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
85317198 T-AGGCCTAATGGCC-ATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
85317243 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
85317290 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
85317339 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
85317388 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
85317435 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
85317482 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
85317529 TAAG
1 TAAG
85317533 TCCCGAAGGG
Statistics
Matches: 406, Mismatches: 13, Indels: 26
0.91 0.03 0.06
Matches are distributed among these distances:
45 14 0.03
46 13 0.03
47 215 0.53
48 14 0.03
49 150 0.37
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:85317707 original size:37 final size:37
Alignment explanation
Indices: 85317651--85317729 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
85317641 CCGAGCTCTA
* * *
85317651 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
85317688 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
85317725 AAGAC
1 AAGAC
85317730 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:85324864 original size:47 final size:47
Alignment explanation
Indices: 85324798--85324922 Score: 134
Period size: 47 Copynumber: 2.7 Consensus size: 47
85324788 TGTGTGAACT
*
85324798 AGTGTAAGACATGTTTGGGACATGCATCAGCCACATT-ATGA-GA-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CACATTGA-GACGAGGCC
**
85324844 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACATTGAGACGAGGGGT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACATTGAGACGA-GGCC
*
85324892 AGTGTAAAACATGTCTGGGACATGCATCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
85324923 TATGAGATGA
Statistics
Matches: 67, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
45 7 0.10
46 17 0.25
47 29 0.43
48 14 0.21
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCACATTGAGACGAGGCC
Found at i:85324958 original size:94 final size:93
Alignment explanation
Indices: 85324797--85324976 Score: 236
Period size: 94 Copynumber: 1.9 Consensus size: 93
85324787 GTGTGTGAAC
* * * * *
85324797 TAGTGTAAGACATGTTTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTG
1 TAGTGTAAAACATGTCTGGGACATGCATCAGCCACATGATGACAGCCAATGTAAGACCATGTCTG
85324862 GGACATGGCATCGACATTGAGACGAGGGG
66 GGACATGGCATCGAC-TTGAGACGAGGGG
* * ** *
85324891 TAGTGTAAAACATGTCTGGGACATGCATCAGCTATGA-GATGACAGTTAATGTAAGACCATGTTT
1 TAGTGTAAAACATGTCTGGGACATGCATCAGCCA-CATGATGACAGCCAATGTAAGACCATGTCT
*
85324955 GGGACATGGCATTGACTTGAGA
65 GGGACATGGCATCGACTTGAGA
85324977 TATGAGCCAG
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
93 6 0.08
94 67 0.91
95 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (93 bp):
TAGTGTAAAACATGTCTGGGACATGCATCAGCCACATGATGACAGCCAATGTAAGACCATGTCTG
GGACATGGCATCGACTTGAGACGAGGGG
Found at i:85324991 original size:47 final size:46
Alignment explanation
Indices: 85324838--85325010 Score: 136
Period size: 47 Copynumber: 3.7 Consensus size: 46
85324828 CCACATTATG
* *
85324838 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGAC-TTGAGA-T
* ** * *
85324886 AGGGGTAGTGTAA-AACATGTCTGGGACAT-GCA-TCAGCTATGAGAT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGA-CT-TGAGAT
* ** * *
85324931 GACAGTTAATGTAAGACCATGTTTGGGACATGGCATTGACTTGAGAT
1 -AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGAGAT
* * *
85324978 ATGAGCCAGTGTAAGACCGTGTCTAGGATATGG
1 A-GAGCCAGTGTAAGACCATGTCTGGGACATGG
85325011 TATCGGCACC
Statistics
Matches: 96, Mismatches: 22, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
45 2 0.02
46 19 0.20
47 58 0.60
48 15 0.16
49 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (46 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGAGAT
Found at i:85341321 original size:42 final size:42
Alignment explanation
Indices: 85341274--85341388 Score: 158
Period size: 42 Copynumber: 2.7 Consensus size: 42
85341264 TGAGTTATCA
*
85341274 TGTAAGACCATATCTGGGATATGGCGTTGATATGAGATTTTG
1 TGTAAGACCATATCTGGGATATGGCGTTGATATGAGAATTTG
* * * *
85341316 TGTAAGACCATGTCTGGGACATGGCGTCGAAATGAGAATTTG
1 TGTAAGACCATATCTGGGATATGGCGTTGATATGAGAATTTG
* * *
85341358 TATAAAACCATATCTGGGATATGGCATTGAT
1 TGTAAGACCATATCTGGGATATGGCGTTGAT
85341389 GTGGGATATG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCGTTGATATGAGAATTTG
Found at i:85368618 original size:16 final size:17
Alignment explanation
Indices: 85368597--85368628 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
85368587 TCCATCTGAA
85368597 ATACAAGA-AAATGATG
1 ATACAAGACAAATGATG
85368613 ATACAAGACAAATGAT
1 ATACAAGACAAATGAT
85368629 ATATGGAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.56, C:0.09, G:0.16, T:0.19
Consensus pattern (17 bp):
ATACAAGACAAATGATG
Found at i:85371070 original size:40 final size:40
Alignment explanation
Indices: 85370976--85371120 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
85370966 TACTCGAATG
*
85370976 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAA-CGACT
* *
85371017 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAACGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAACGACT
* ** *
85371057 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAACGACT
* *
85371097 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
85371121 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 59 0.65
41 30 0.33
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAACGACT
Found at i:85374269 original size:20 final size:20
Alignment explanation
Indices: 85374244--85374284 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
85374234 AAGAAGTAAG
*
85374244 GCTTTATGTAATGGTTATCT
1 GCTTTATATAATGGTTATCT
85374264 GCTTTATATAATGGTTATCT
1 GCTTTATATAATGGTTATCT
85374284 G
1 G
85374285 GGTTTGTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.22, C:0.10, G:0.20, T:0.49
Consensus pattern (20 bp):
GCTTTATATAATGGTTATCT
Found at i:85384757 original size:20 final size:18
Alignment explanation
Indices: 85384710--85384758 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
85384700 TTGACCCCTG
* *
85384710 TTTTCAAAAATTTTTGTT
1 TTTTCAAAATTTTTTATT
85384728 TTTTCTAAAATTTTTTAATT
1 TTTTC-AAAATTTTTT-ATT
85384748 TGTTTCAAAAT
1 T-TTTCAAAAT
85384759 GATCCCCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 5 0.19
19 9 0.35
20 8 0.31
21 4 0.15
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (18 bp):
TTTTCAAAATTTTTTATT
Found at i:85385925 original size:14 final size:15
Alignment explanation
Indices: 85385897--85385925 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
85385887 ACTAATACAA
85385897 ACTTACACTAAAATT
1 ACTTACACTAAAATT
85385912 ACTTACAC-AAAATT
1 ACTTACACTAAAATT
85385926 TTCAACATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
ACTTACACTAAAATT
Found at i:85387519 original size:27 final size:27
Alignment explanation
Indices: 85387461--85387520 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
85387451 ATAGGCCCAA
* ** * *
85387461 CAAGTTAGGGTTTGCCAAAGGGCTTGG
1 CAAGCTAGGGTTCACCAAAGGGCGTAG
*
85387488 TAAGCTAGGGTTCACCAAAGGGCGTAG
1 CAAGCTAGGGTTCACCAAAGGGCGTAG
85387515 CAAGCT
1 CAAGCT
85387521 GAGGTTCGCC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (27 bp):
CAAGCTAGGGTTCACCAAAGGGCGTAG
Found at i:85393786 original size:5 final size:4
Alignment explanation
Indices: 85393742--85393782 Score: 64
Period size: 4 Copynumber: 9.8 Consensus size: 4
85393732 ATTTAATATA
85393742 AAAT AAAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAAT AAA
1 AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAA
85393783 ATAAGATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 27 0.77
5 8 0.23
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:85395785 original size:20 final size:20
Alignment explanation
Indices: 85395760--85395797 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
85395750 ATCGAGATCT
85395760 AGCCTTGTTGAAGATTCTCG
1 AGCCTTGTTGAAGATTCTCG
*
85395780 AGCCTTGTTGCAGATTCT
1 AGCCTTGTTGAAGATTCT
85395798 TTGGTCTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (20 bp):
AGCCTTGTTGAAGATTCTCG
Found at i:85397945 original size:24 final size:24
Alignment explanation
Indices: 85397918--85397965 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
85397908 GTGAAACTAT
*
85397918 AAAGGTTGAAAAGCCGAAAAGTAG
1 AAAGGCTGAAAAGCCGAAAAGTAG
85397942 AAAGGCTGAAAAGCCGAAAAGTAG
1 AAAGGCTGAAAAGCCGAAAAGTAG
85397966 GTTGTCGACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.29, T:0.10
Consensus pattern (24 bp):
AAAGGCTGAAAAGCCGAAAAGTAG
Found at i:85398412 original size:27 final size:27
Alignment explanation
Indices: 85398372--85398445 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
85398362 AAAATGACCG
**
85398372 AATACCCCAATAGGGTAAAATGACTAT
1 AATACCCCTGTAGGGTAAAATGACTAT
* * *
85398399 AATACCCTTGTAGGGTAAAATGATTGT
1 AATACCCCTGTAGGGTAAAATGACTAT
*
85398426 AATACCCCTGTAAGGTAAAA
1 AATACCCCTGTAGGGTAAAA
85398446 GGATAGTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.26
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACTAT
Found at i:85398472 original size:27 final size:27
Alignment explanation
Indices: 85398439--85398682 Score: 237
Period size: 27 Copynumber: 9.0 Consensus size: 27
85398429 ACCCCTGTAA
*
85398439 GGTAAAAGGATAGTTTTGCCCTTATGT
1 GGTAAAATGATAGTTTTGCCCTTATGT
* * *
85398466 GGCAAAATGATTGTTTTGCCCTTATAT
1 GGTAAAATGATAGTTTTGCCCTTATGT
* * *
85398493 GTTAAAATGACAATTTTGCCCTTATGT
1 GGTAAAATGATAGTTTTGCCCTTATGT
* *
85398520 GATAAAATGACAGTTTTGCCCTTATGT
1 GGTAAAATGATAGTTTTGCCCTTATGT
*
85398547 GGCAAAATGACT-GTTTTGCCCTTATGT
1 GGTAAAATGA-TAGTTTTGCCCTTATGT
* * * *
85398574 GTTAAAATAAT-GATTTTTCCCTTATGA
1 GGTAAAATGATAG-TTTTGCCCTTATGT
*
85398601 GGTAAAATGAT-GATTTTGCCCTTATGA
1 GGTAAAATGATAG-TTTTGCCCTTATGT
*
85398628 GGTAAAATGATTA-TTTTGTCCTTATGT
1 GGTAAAATGA-TAGTTTTGCCCTTATGT
** *
85398655 GGTAGGATGACTA-TTTTGCCCCTATGT
1 GGTAAAATGA-TAGTTTTGCCCTTATGT
85398682 G
1 G
85398683 ATGTTTGTTT
Statistics
Matches: 183, Mismatches: 30, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
26 2 0.01
27 180 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTAAAATGATAGTTTTGCCCTTATGT
Found at i:85398535 original size:81 final size:80
Alignment explanation
Indices: 85398441--85398684 Score: 290
Period size: 81 Copynumber: 3.0 Consensus size: 80
85398431 CCCTGTAAGG
* *
85398441 TAAAAGGATAGTTTTGCCCTTATGTGGCAAAATGATTGTTTTGCCCTTATATGTTAAAATGACAA
1 TAAAATGA-AGTTTTGCCCTTATGTGGCAAAATGATTGTTTTGCCCTTATGTGTTAAAATGACAA
85398506 TTTTGCCCTTATGTGA
65 TTTTGCCCTTATGTGA
* * **
85398522 TAAAATGACAGTTTTGCCCTTATGTGGCAAAATGACTGTTTTGCCCTTATGTGTTAAAATAATGA
1 TAAAATGA-AGTTTTGCCCTTATGTGGCAAAATGATTGTTTTGCCCTTATGTGTTAAAATGACAA
* * *
85398587 TTTTTCCCTTATGAGG
65 TTTTGCCCTTATGTGA
* * * * * * ** *
85398603 TAAAATGATGATTTTGCCCTTATGAGGTAAAATGATTATTTTGTCCTTATGTGGTAGGATGACTA
1 TAAAATGAAG-TTTTGCCCTTATGTGGCAAAATGATTGTTTTGCCCTTATGTGTTAAAATGACAA
*
85398668 TTTTGCCCCTATGTGA
65 TTTTGCCCTTATGTGA
85398684 T
1 T
85398685 GTTTGTTTAT
Statistics
Matches: 136, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
80 1 0.01
81 135 0.99
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (80 bp):
TAAAATGAAGTTTTGCCCTTATGTGGCAAAATGATTGTTTTGCCCTTATGTGTTAAAATGACAAT
TTTGCCCTTATGTGA
Found at i:85399080 original size:18 final size:18
Alignment explanation
Indices: 85399006--85399080 Score: 80
Period size: 18 Copynumber: 4.1 Consensus size: 18
85398996 AGGACTTGCA
85399006 TACTGTTTACTGTTACTG
1 TACTGTTTACTGTTACTG
* *
85399024 CATACTG-TTACTGCTACTA
1 --TACTGTTTACTGTTACTG
* * *
85399043 CACTGTTTACTATTATTG
1 TACTGTTTACTGTTACTG
85399061 TACTGTTTACTGTTACTG
1 TACTGTTTACTGTTACTG
85399079 TA
1 TA
85399081 ATGAGCCAAG
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
17 4 0.09
18 25 0.57
19 10 0.23
20 5 0.11
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (18 bp):
TACTGTTTACTGTTACTG
Found at i:85401061 original size:21 final size:22
Alignment explanation
Indices: 85401035--85401083 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
85401025 TATTATTTTT
85401035 TATATTAATC-AAAATAAATAA
1 TATATTAATCAAAAATAAATAA
*
85401056 TATATTATTCAAAAATAAATAA
1 TATATTAATCAAAAATAAATAA
85401078 TATATT
1 TATATT
85401084 GTATATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (22 bp):
TATATTAATCAAAAATAAATAA
Found at i:85403115 original size:2 final size:2
Alignment explanation
Indices: 85403108--85403135 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
85403098 AAATTGCTCC
85403108 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85403136 TCATTCTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85410861 original size:30 final size:30
Alignment explanation
Indices: 85410825--85410883 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
85410815 ACTTAACAAG
85410825 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
* *
85410855 CAAATGTCTTTAAATTAATAACAAAATTA
1 CAAATGTCTCTAAAATAATAACAAAATTA
85410884 GCAATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.54, C:0.12, G:0.03, T:0.31
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:85413488 original size:6 final size:6
Alignment explanation
Indices: 85413477--85413501 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
85413467 ATCCATTCCA
85413477 CTGAGC CTGAGC CTGAGC CTGAGC C
1 CTGAGC CTGAGC CTGAGC CTGAGC C
85413502 ATGTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (6 bp):
CTGAGC
Found at i:85431928 original size:55 final size:56
Alignment explanation
Indices: 85431863--85431977 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
85431853 AGCATGGCTG
* *
85431863 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
85431919 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
85431974 CCAG
1 CCAG
85431978 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:85431940 original size:27 final size:27
Alignment explanation
Indices: 85431888--85431977 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
85431878 GTGACAGAGT
85431888 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
85431917 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
85431944 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
85431972 CACCAG
1 CACCAG
85431978 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:85432130 original size:28 final size:28
Alignment explanation
Indices: 85432083--85432150 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
85432073 AAATTAACCC
* *
85432083 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
85432111 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
85432139 TAGGGGTATAAT
1 TAGGGGTATAAT
85432151 AGTACATCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:85440805 original size:15 final size:15
Alignment explanation
Indices: 85440785--85440815 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
85440775 TAATTATTTA
85440785 TTTATTTATTTCTAT
1 TTTATTTATTTCTAT
*
85440800 TTTATTTATTTTTAT
1 TTTATTTATTTCTAT
85440815 T
1 T
85440816 ATTTCTAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTATTTATTTCTAT
Found at i:85442042 original size:16 final size:16
Alignment explanation
Indices: 85442021--85442051 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85442011 TTCTTCTGCA
85442021 ATTTATTCATACAGTG
1 ATTTATTCATACAGTG
*
85442037 ATTTATTCGTACAGT
1 ATTTATTCATACAGT
85442052 TCTTCTGCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (16 bp):
ATTTATTCATACAGTG
Found at i:85453236 original size:51 final size:50
Alignment explanation
Indices: 85453061--85453235 Score: 212
Period size: 51 Copynumber: 3.5 Consensus size: 50
85453051 CTAGTGACTT
* *
85453061 AAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGCTTGGTCAC
1 AAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGTCAC
*
85453110 AAGTGTGGTACTAT-TGAAGGCCACGTTGTGAAGAAAGATAGCTTTCGTCAC
1 AAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTT-GTCAC
* * * * *
85453161 AAGTGTGGTACTATGTAAAGGCCATTTTGTGCAGAAGGTAGCTTTGACTAC
1 AAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGTC-AC
*
85453212 AA-TGGTGGTACTATGTGCAGGCCA
1 AAGT-GTGGTACTATGTGAAGGCCA
85453236 TCCGGTATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
48 17 0.16
49 14 0.13
50 12 0.11
51 51 0.47
52 15 0.14
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (50 bp):
AAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGTCAC
Found at i:85454994 original size:40 final size:40
Alignment explanation
Indices: 85454943--85455034 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
85454933 CTCAACATTT
* *
85454943 CACACTTAGTGCTACATATAGCCAAAACTAT-TCCAATTCG
1 CACACTAAGTGCTACATATAGCCAAAACTATCTCCAA-ACG
* * * *
85454983 CACACTAAGTGCTATATATAGCCGAAGCTATCTCGAAACG
1 CACACTAAGTGCTACATATAGCCAAAACTATCTCCAAACG
85455023 CACACTAAGTGC
1 CACACTAAGTGC
85455035 CAACATAGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 41 0.91
41 4 0.09
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCTACATATAGCCAAAACTATCTCCAAACG
Found at i:85455504 original size:29 final size:29
Alignment explanation
Indices: 85455440--85455505 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
85455430 TTTTCATTTA
* *
85455440 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATATACACT
* * *
85455469 TTTCTCAATTTAATCCCT-AATATGCATT
1 TTTCTCAATTTAACCCCTCAATATACACT
85455497 TTTACTCAA
1 TTT-CTCAA
85455506 ATCACTCTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.42
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATATACACT
Found at i:85458649 original size:28 final size:28
Alignment explanation
Indices: 85458589--85458645 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
85458579 ACATAAGTAA
* *
85458589 GGTTCACACATACAGGGTTCAGATCTAG
1 GGTTCACACATACAGGGTTCAAACCTAG
* *
85458617 GGTTCACATATA-TGGGTTCAAACCTAG
1 GGTTCACACATACAGGGTTCAAACCTAG
85458644 GG
1 GG
85458646 GTTCGTACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (28 bp):
GGTTCACACATACAGGGTTCAAACCTAG
Found at i:85468247 original size:29 final size:29
Alignment explanation
Indices: 85468181--85468252 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
85468171 TGGCCCATCT
**
85468181 CATTCATATGGCCCATCAAGCCCAATTTA
1 CATTCATATGGCCCATCAAGCCCAATAAA
*
85468210 CATTCATATGGCCCATCAGGCCCAAATAAA
1 CATTCATATGGCCCATCAAGCCC-AATAAA
*
85468240 C-TTTATATGGCCC
1 CATTCATATGGCCC
85468253 GTTAGTCCCA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 33 0.87
30 5 0.13
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (29 bp):
CATTCATATGGCCCATCAAGCCCAATAAA
Found at i:85468501 original size:16 final size:16
Alignment explanation
Indices: 85468480--85468522 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
85468470 CCAAACTTTC
85468480 GGCTTTTCGACATTTT
1 GGCTTTTCGACATTTT
*
85468496 GGCTTTTCAACATTTT
1 GGCTTTTCGACATTTT
85468512 GGCTTTTCGAC
1 GGCTTTTCGAC
85468523 TTTGCCGATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.47
Consensus pattern (16 bp):
GGCTTTTCGACATTTT
Found at i:85469723 original size:16 final size:17
Alignment explanation
Indices: 85469691--85469726 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
85469681 ACAAAGAAAG
*
85469691 TTTGGGATTTTGAGATT
1 TTTGGGATTTCGAGATT
85469708 TTTGGG-TTTCGAGATT
1 TTTGGGATTTCGAGATT
85469724 TTT
1 TTT
85469727 AGGGCGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.14, C:0.03, G:0.28, T:0.56
Consensus pattern (17 bp):
TTTGGGATTTCGAGATT
Found at i:85472556 original size:16 final size:16
Alignment explanation
Indices: 85472535--85472568 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
85472525 AATATATTAG
85472535 TAAAGTTTTATGTGGT
1 TAAAGTTTTATGTGGT
85472551 TAAAGTTTTATGTGGT
1 TAAAGTTTTATGTGGT
85472567 TA
1 TA
85472569 TCATATACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (16 bp):
TAAAGTTTTATGTGGT
Found at i:85472668 original size:20 final size:19
Alignment explanation
Indices: 85472643--85472686 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
85472633 TGGCCCATCA
85472643 GGCCCAATTCACATTCATAT
1 GGCCCAA-TCACATTCATAT
*
85472663 GGCCC-ATCTCATTCATAT
1 GGCCCAATCACATTCATAT
85472681 GGCCCA
1 GGCCCA
85472687 TCAGGCCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 16 0.73
19 1 0.05
20 5 0.23
ACGTcount: A:0.25, C:0.34, G:0.14, T:0.27
Consensus pattern (19 bp):
GGCCCAATCACATTCATAT
Found at i:85472677 original size:18 final size:18
Alignment explanation
Indices: 85472654--85472688 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
85472644 GCCCAATTCA
85472654 CATTCATATGGCCCATCT
1 CATTCATATGGCCCATCT
85472672 CATTCATATGGCCCATC
1 CATTCATATGGCCCATC
85472689 AGGCCCAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.34, G:0.11, T:0.31
Consensus pattern (18 bp):
CATTCATATGGCCCATCT
Found at i:85472684 original size:47 final size:47
Alignment explanation
Indices: 85472615--85472713 Score: 189
Period size: 47 Copynumber: 2.1 Consensus size: 47
85472605 ATGACCCGCT
85472615 TGGCCCATCTCATTCATATGGCCCATCAGGCCCAATTCACATTCATA
1 TGGCCCATCTCATTCATATGGCCCATCAGGCCCAATTCACATTCATA
*
85472662 TGGCCCATCTCATTCATATGGCCCATCAGGCCCAATTCATATTCATA
1 TGGCCCATCTCATTCATATGGCCCATCAGGCCCAATTCACATTCATA
85472709 TGGCC
1 TGGCC
85472714 TATTAGGCCC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.28
Consensus pattern (47 bp):
TGGCCCATCTCATTCATATGGCCCATCAGGCCCAATTCACATTCATA
Found at i:85472721 original size:29 final size:29
Alignment explanation
Indices: 85472672--85472759 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
85472662 TGGCCCATCT
* * *
85472672 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCTATTAGGCCCAAATCA
*
85472701 TATTCATATGGCCTATTAGGCCCAAATCA
1 CATTCATATGGCCTATTAGGCCCAAATCA
* * * *
85472730 CCTTTATATGGCCTGTTAAGCCCAAATCA
1 CATTCATATGGCCTATTAGGCCCAAATCA
85472759 C
1 C
85472760 CTTATCACAC
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (29 bp):
CATTCATATGGCCTATTAGGCCCAAATCA
Found at i:85476482 original size:21 final size:21
Alignment explanation
Indices: 85476458--85476540 Score: 69
Period size: 21 Copynumber: 3.8 Consensus size: 21
85476448 CTAGGAATTA
85476458 TTGTGATCTGAACTCATTGAG
1 TTGTGATCTGAACTCATTGAG
** ** *
85476479 TTGTGGCCTGAGTTCA-TGATAT
1 TTGTGATCTGAACTCATTG--AG
85476501 TTGTGACATCTGAACTCATTGAG
1 TTGTG--ATCTGAACTCATTGAG
*
85476524 TTGTGATCTGAATTCAT
1 TTGTGATCTGAACTCAT
85476541 GATGCATGGG
Statistics
Matches: 46, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
20 2 0.04
21 23 0.50
22 6 0.13
23 6 0.13
24 7 0.15
25 2 0.04
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.40
Consensus pattern (21 bp):
TTGTGATCTGAACTCATTGAG
Found at i:85476554 original size:45 final size:45
Alignment explanation
Indices: 85476463--85476554 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
85476453 AATTATTGTG
* * ** *
85476463 ATCTGAACTCATTGAGTTGTGGCCTGAGTTCATGATATTTGTGAC
1 ATCTGAACTCATTGAGTTGTGACCTGAATTCATGATACATGGGAC
* *
85476508 ATCTGAACTCATTGAGTTGTGATCTGAATTCATGATGCATGGGAC
1 ATCTGAACTCATTGAGTTGTGACCTGAATTCATGATACATGGGAC
85476553 AT
1 AT
85476555 ATGTTTTGGC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTGACCTGAATTCATGATACATGGGAC
Found at i:85482503 original size:28 final size:28
Alignment explanation
Indices: 85482471--85482526 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
85482461 TATATGGGCG
85482471 TAAGTGTCGAATGCCATTGTATTAGACC
1 TAAGTGTCGAATGCCATTGTATTAGACC
85482499 TAAGTGTCGAATGCCATTGTATTAGACC
1 TAAGTGTCGAATGCCATTGTATTAGACC
85482527 GAGCTCAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (28 bp):
TAAGTGTCGAATGCCATTGTATTAGACC
Found at i:85486073 original size:46 final size:45
Alignment explanation
Indices: 85486000--85486128 Score: 172
Period size: 46 Copynumber: 2.8 Consensus size: 45
85485990 AGGTTATTTG
*
85486000 TGTGCCAGCGTAAGACATGTCTAGGACATACATCGGCCT-CGAGA
1 TGTGCCAGCGTAAGACATGTCTAGGACATGCATCGGCCTACGAGA
*
85486044 TGTAAGCCAGCGTAAGACATGTCTGGGACATGCATCGG-CTACGAGA
1 TGT--GCCAGCGTAAGACATGTCTAGGACATGCATCGGCCTACGAGA
* *
85486090 TGTGTCAGTGTAAGACCATGTCTAGGACATCGCATCGGC
1 TGTGCCAGCGTAAGA-CATGTCTAGGACAT-GCATCGGC
85486129 ACGGATATGT
Statistics
Matches: 74, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
44 13 0.18
45 15 0.20
46 46 0.62
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (45 bp):
TGTGCCAGCGTAAGACATGTCTAGGACATGCATCGGCCTACGAGA
Found at i:85490282 original size:17 final size:19
Alignment explanation
Indices: 85490245--85490282 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
85490235 AAACCCTAAA
*
85490245 TTTTCTCCTTTCTTTTTCT
1 TTTTCTCCTTTCTTCTTCT
85490264 TTTTC-CCTTT-TTCTTCT
1 TTTTCTCCTTTCTTCTTCT
85490281 TT
1 TT
85490283 CTTTCCCCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 8 0.44
18 5 0.28
19 5 0.28
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTCTCCTTTCTTCTTCT
Found at i:85490291 original size:20 final size:20
Alignment explanation
Indices: 85490253--85490296 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
85490243 AATTTTCTCC
* *
85490253 TTTCTTTTTCTTTTTCCCTT
1 TTTCTTTTTCTTTTCCCCTG
85490273 TTTCTTCTTTC-TTTCCCCTG
1 TTTCTT-TTTCTTTTCCCCTG
85490293 TTTC
1 TTTC
85490297 GTTCCCCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.00, C:0.30, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTCTTTTTCTTTTCCCCTG
Found at i:85503553 original size:18 final size:18
Alignment explanation
Indices: 85503530--85503568 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
85503520 ACTTTAGTTG
* *
85503530 TTTTTCTTTTTCTTTTTA
1 TTTTTCCTTTTATTTTTA
85503548 TTTTTCCTTTTATTTTTA
1 TTTTTCCTTTTATTTTTA
85503566 TTT
1 TTT
85503569 CTATTTCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTCCTTTTATTTTTA
Found at i:85503565 original size:6 final size:6
Alignment explanation
Indices: 85503530--85503582 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
85503520 ACTTTAGTTG
* * * * * *
85503530 TTTTTC TTTTTC TTTTTA TTTTTC CTTTTA TTTTTA TTTCTA TTTCTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
85503578 TTTTT
1 TTTTT
85503583 TTATGTTCTA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:85515184 original size:14 final size:15
Alignment explanation
Indices: 85515156--85515184 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
85515146 CTCTTTCAAG
85515156 GACAAGAATAATCCA
1 GACAAGAATAATCCA
85515171 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
85515185 TATGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:85515881 original size:15 final size:15
Alignment explanation
Indices: 85515863--85515906 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
85515853 GAAGCCCAGA
85515863 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
85515878 ATAAACAAATCCATG
1 ATAAAGAAATCCAAG
* *
85515893 ACAAGGAAATCCAA
1 ATAAAGAAATCCAA
85515907 TTTACAACAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.57, C:0.18, G:0.11, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:85519775 original size:35 final size:35
Alignment explanation
Indices: 85519736--85519803 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
85519726 TACTTAAATG
* *
85519736 AGATCGGATTTGAATTA-CCAGTCCAGGCTAAATTC
1 AGATCCGAATTGAATTACCCA-TCCAGGCTAAATTC
* *
85519771 AGATCCTAATTGGATTACCCATCCAGGCTAAAT
1 AGATCCGAATTGAATTACCCATCCAGGCTAAAT
85519804 CCTTAATGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 25 0.89
36 3 0.11
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (35 bp):
AGATCCGAATTGAATTACCCATCCAGGCTAAATTC
Found at i:85528174 original size:20 final size:20
Alignment explanation
Indices: 85528151--85528194 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
85528141 GTTTTGATTC
85528151 TTTAAATAAAATTTTAAGGT
1 TTTAAATAAAATTTTAAGGT
*
85528171 TTTAAATAAAGTTTTAAGGT
1 TTTAAATAAAATTTTAAGGT
85528191 TTTA
1 TTTA
85528195 TTTTTTGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (20 bp):
TTTAAATAAAATTTTAAGGT
Found at i:85528404 original size:2 final size:2
Alignment explanation
Indices: 85528397--85528433 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
85528387 GTTTTAAGGT
85528397 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
85528434 TGTTTTGGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:85531599 original size:3 final size:3
Alignment explanation
Indices: 85531551--85531584 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
85531541 AAAATATATA
*
85531551 AAT AAT ATAT AAT AAT GAT AAT AAT AAT AAT AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
85531585 TTGTGAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:85531616 original size:20 final size:19
Alignment explanation
Indices: 85531593--85531634 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
85531583 ATTTGTGAAA
85531593 AATAATATACGATAAATAAT
1 AATAATATACGATAAA-AAT
* *
85531613 AATAATGTATGATAAAAAT
1 AATAATATACGATAAAAAT
85531632 AAT
1 AAT
85531635 CTTATAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (19 bp):
AATAATATACGATAAAAAT
Found at i:85533715 original size:210 final size:209
Alignment explanation
Indices: 85533255--85533814 Score: 668
Period size: 210 Copynumber: 2.7 Consensus size: 209
85533245 AAAACTGCTT
* ** * * * *
85533255 CTTCGATTTATTCTCTGACAATACAGAGGTGCCAAATTATCTTAGATTTGTTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * ** * * **
85533320 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTG--TAAGCACA-AG-GAT--GACAAAT
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCACGCCGAA-TACAGAGAGATAAGAC-TGT
* *
85533379 CATCTTGGATCTTGCTTCAGTCTAATCGTCTGAAGATCAGATCTGCCATGTATCTGTTCCCCATT
129 CATCTTGGATC-TGCTTCAGTCTAAACATCTGAAGATCAGATCTGCCATGTATCTGTT-CCCATT
* * * *
85533444 GAATGTGGAGATGCCAGA
192 CAAAGTGGAAATGCCACA
*
85533462 CTTCGATTTGTTCTCTAACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
85533527 GTGAATGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGAGCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCACGCCGAATACAGAGAGATAAGA-CTGTC
* * * * * *
85533592 ATCTTGGATCTGCTTTAGTGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTT-CCA-TC
130 ATCTTGGATCTGCTTCAGTCTAAACATCTGAAGATCAGATCTGCCATGTATCTG--TTCCCATTC
85533655 AAAGTGGAAATGCCACA
193 AAAGTGGAAATGCCACA
*
85533672 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTTCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
85533737 GTGAAAGCCAAATCAACTATATCTTCGATCTGCTCCACACCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCACGCCGAATACAGAGAGATAAGA-CTGTC
*
85533802 ATCTTGAATCTGC
130 ATCTTGGATCTGC
85533815 CCTGATAATG
Statistics
Matches: 305, Mismatches: 39, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
207 89 0.29
208 3 0.01
209 4 0.01
210 153 0.50
211 39 0.13
212 14 0.05
213 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (209 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCACGCCGAATACAGAGAGATAAGACTGTCA
TCTTGGATCTGCTTCAGTCTAAACATCTGAAGATCAGATCTGCCATGTATCTGTTCCCATTCAAA
GTGGAAATGCCACA
Found at i:85541957 original size:14 final size:14
Alignment explanation
Indices: 85541934--85541963 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
85541924 ATTCTGGTTC
85541934 AATTTCATTTAGAA
1 AATTTCATTTAGAA
*
85541948 AATTTTATTTAGAA
1 AATTTCATTTAGAA
85541962 AA
1 AA
85541964 AGAATATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (14 bp):
AATTTCATTTAGAA
Found at i:85545700 original size:24 final size:24
Alignment explanation
Indices: 85545651--85545701 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
85545641 TTGCTATACA
*
85545651 ATTTATAAAACATAATAACAAAAT
1 ATTTATAAAAAATAATAACAAAAT
* *
85545675 ATTTATAAAAGAATGATAA-AATAT
1 ATTTATAAAA-AATAATAACAAAAT
85545699 ATT
1 ATT
85545702 GGTTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (24 bp):
ATTTATAAAAAATAATAACAAAAT
Found at i:85545885 original size:7 final size:7
Alignment explanation
Indices: 85545873--85545962 Score: 59
Period size: 7 Copynumber: 13.1 Consensus size: 7
85545863 TTTAAGTAAT
*
85545873 ATAATGA
1 ATAATAA
*
85545880 ATAATGA
1 ATAATAA
85545887 ATAATAA
1 ATAATAA
85545894 ATAAT--
1 ATAATAA
85545899 ATAATAA
1 ATAATAA
*
85545906 ATAATAT
1 ATAATAA
85545913 ATACATAA
1 ATA-ATAA
85545921 CATATATAA
1 -ATA-ATAA
85545930 A-AA-AA
1 ATAATAA
85545935 ATAAGT-A
1 ATAA-TAA
85545942 AT-ATAGA
1 ATAATA-A
85545949 ATAA-AA
1 ATAATAA
85545955 ATAATAA
1 ATAATAA
85545962 A
1 A
85545963 CGTTATAGAA
Statistics
Matches: 68, Mismatches: 4, Indels: 22
0.72 0.04 0.23
Matches are distributed among these distances:
5 9 0.13
6 9 0.13
7 38 0.56
8 5 0.07
9 7 0.10
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (7 bp):
ATAATAA
Found at i:85545953 original size:23 final size:23
Alignment explanation
Indices: 85545926--85545977 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
85545916 CATAACATAT
85545926 ATAAAAAAAAT-AA-GTAATATAGA
1 ATAAAAAAAATAAACGT--TATAGA
*
85545949 ATAAAAATAATAAACGTTATAGA
1 ATAAAAAAAATAAACGTTATAGA
85545972 ATAAAA
1 ATAAAA
85545978 CATAATTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 22 0.85
24 2 0.08
25 2 0.08
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (23 bp):
ATAAAAAAAATAAACGTTATAGA
Found at i:85546077 original size:15 final size:14
Alignment explanation
Indices: 85546059--85546125 Score: 61
Period size: 12 Copynumber: 4.9 Consensus size: 14
85546049 GACAATATAT
85546059 ATATATAATTAATAA
1 ATATATAA-TAATAA
*
85546074 ATATATAAAATATAAA
1 ATATATAATA-AT-AA
85546090 ATATATAATAATAA
1 ATATATAATAATAA
*
85546104 A-A-ATAATGAT-A
1 ATATATAATAATAA
85546115 ATA-ATAATAAT
1 ATATATAATAAT
85546126 TTGTGAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
11 2 0.04
12 15 0.33
13 1 0.02
14 4 0.09
15 12 0.27
16 11 0.24
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (14 bp):
ATATATAATAATAA
Found at i:85546093 original size:16 final size:16
Alignment explanation
Indices: 85546055--85546121 Score: 73
Period size: 16 Copynumber: 3.9 Consensus size: 16
85546045 TAAGGACAAT
85546055 ATATATATATAATTAATAA
1 ATATATA-ATAA-TAA-AA
85546074 ATATATAA-AATATAAA
1 ATATATAATAATA-AAA
85546090 ATATATAATAATAAAA
1 ATATATAATAATAAAA
85546106 ATAATGATAATAATAA
1 AT-AT-ATAATAATAA
85546122 TAATTTGTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
16 17 0.39
17 9 0.20
18 11 0.25
19 7 0.16
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (16 bp):
ATATATAATAATAAAA
Found at i:85546115 original size:6 final size:6
Alignment explanation
Indices: 85546063--85546125 Score: 51
Period size: 6 Copynumber: 10.3 Consensus size: 6
85546053 ATATATATAT
* *
85546063 ATAATTA ATAAATA TATAA-A AT-ATA A-AATA TATAATA ATAAAA ATAATG
1 ATAA-TA AT-AATA -ATAATA ATAATA ATAATA -ATAATA ATAATA ATAATA
85546112 ATAATA ATAATA AT
1 ATAATA ATAATA AT
85546126 TTGTGAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
4 1 0.02
5 7 0.15
6 24 0.52
7 10 0.22
8 4 0.09
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (6 bp):
ATAATA
Found at i:85546124 original size:9 final size:9
Alignment explanation
Indices: 85546063--85546125 Score: 51
Period size: 9 Copynumber: 6.9 Consensus size: 9
85546053 ATATATATAT
85546063 ATAATTAATAA
1 ATAA-TAAT-A
85546074 ATATATAA-A
1 ATA-ATAATA
85546083 AT-ATAA-A
1 ATAATAATA
85546090 ATATATAATA
1 ATA-ATAATA
*
85546100 ATAAAAATA
1 ATAATAATA
*
85546109 ATGATAATA
1 ATAATAATA
85546118 ATAATAAT
1 ATAATAAT
85546126 TTGTGAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
7 7 0.16
9 26 0.59
10 4 0.09
11 6 0.14
12 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (9 bp):
ATAATAATA
Found at i:85546157 original size:20 final size:19
Alignment explanation
Indices: 85546134--85546175 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
85546124 ATTTGTGAAA
85546134 AATAATATACGATAAATAAT
1 AATAATATACGATAAA-AAT
* *
85546154 AATAATGTATGATAAAAAT
1 AATAATATACGATAAAAAT
85546173 AAT
1 AAT
85546176 CTTATAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (19 bp):
AATAATATACGATAAAAAT
Found at i:85546220 original size:13 final size:13
Alignment explanation
Indices: 85546204--85546228 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85546194 AAAGTAAGGT
85546204 TAAAAAATAAAAA
1 TAAAAAATAAAAA
85546217 TAAAAAATAAAA
1 TAAAAAATAAAA
85546229 CAATATCTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:85549656 original size:29 final size:29
Alignment explanation
Indices: 85549614--85549676 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
85549604 AAACTGTGAA
*
85549614 AACAAATTGCAATCTTTTATTCCAATAGC
1 AACAGATTGCAATCTTTTATTCCAATAGC
85549643 AACAGATTGCAATCTTTTATTCCAATAGC
1 AACAGATTGCAATCTTTTATTCCAATAGC
85549672 AACAG
1 AACAG
85549677 TAGCACATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (29 bp):
AACAGATTGCAATCTTTTATTCCAATAGC
Found at i:85550795 original size:21 final size:21
Alignment explanation
Indices: 85550769--85550816 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
85550759 TGATAGATTT
85550769 TGATTTGTTAAGTTTTAATTC
1 TGATTTGTTAAGTTTTAATTC
*
85550790 TGATTTGTTAAGTTTTATTTC
1 TGATTTGTTAAGTTTTAATTC
*
85550811 AGATTT
1 TGATTT
85550817 ATTTTACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.23, C:0.04, G:0.15, T:0.58
Consensus pattern (21 bp):
TGATTTGTTAAGTTTTAATTC
Found at i:85554205 original size:21 final size:21
Alignment explanation
Indices: 85554167--85554206 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
85554157 ATTTATTTTA
85554167 AAATTTTTATGATATAAAAAT
1 AAATTTTTATGATATAAAAAT
*
85554188 AAATATTTTAT-ATTTAAAA
1 AAAT-TTTTATGATATAAAA
85554207 TAATGAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (21 bp):
AAATTTTTATGATATAAAAAT
Found at i:85562183 original size:22 final size:22
Alignment explanation
Indices: 85562134--85562183 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
85562124 ATTTCAGTGA
*
85562134 AAAAATATAATTTAAATTAGAC
1 AAAAATATAATTTAAATCAGAC
*
85562156 AAAAATATAATTTAAATCATAC
1 AAAAATATAATTTAAATCAGAC
*
85562178 ATAAAT
1 AAAAAT
85562184 GACTAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAAATATAATTTAAATCAGAC
Found at i:85562551 original size:56 final size:55
Alignment explanation
Indices: 85562484--85562633 Score: 207
Period size: 53 Copynumber: 2.7 Consensus size: 55
85562474 AATAGTTACG
85562484 TAGGAATCAAATTGCTAAAATATAATATCCCATAATAATATCCTATAATATCCCAT
1 TAGGAATCAAATTGCTAAAA-ATAATATCCCATAATAATATCCTATAATATCCCAT
* * * *
85562540 TAGGAATCAAATTGCTAAGAAATAATATCTC--AA-AATATTCTGTAATATCTCAT
1 TAGGAATCAAATTGCTAA-AAATAATATCCCATAATAATATCCTATAATATCCCAT
*
85562593 TAAGAATCAAATTGCTAAAAGATAATATCCCATAATAATAT
1 TAGGAATCAAATTGCTAAAA-ATAATATCCCATAATAATAT
85562634 ATTAACACCC
Statistics
Matches: 83, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
52 2 0.02
53 43 0.52
54 2 0.02
55 2 0.02
56 32 0.39
57 2 0.02
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (55 bp):
TAGGAATCAAATTGCTAAAAATAATATCCCATAATAATATCCTATAATATCCCAT
Done.