Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 253 of 362
Found at i:85565751 original size:39 final size:39
Alignment explanation
Indices: 85565612--85565818 Score: 145
Period size: 39 Copynumber: 5.0 Consensus size: 39
85565602 ACTTGAAACC
**
85565612 AATTACCAGCACA-AGCCTGCGGGAATTTAA-TCCCGG-TAT
1 AATT-CCAGCACATAGCCTGC-GGACCTTAAGT-CCGGATAT
* * * * *
85565651 AATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACAT
1 AATTCCAGCAC-ATAGCCTGC-GGACCTTAAGTCCGGATAT
* *
85565690 ATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATAT
85565729 AATTCCAGCACATAGCCTGCGGATAGCCTGCGGACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGG--A-CCT--------TAAGTCCGGATAT
*
85565779 AATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATAT
85565818 A
1 A
85565819 CATCACTGAA
Statistics
Matches: 136, Mismatches: 16, Indels: 32
0.74 0.09 0.17
Matches are distributed among these distances:
38 16 0.12
39 78 0.57
41 1 0.01
42 3 0.02
47 2 0.01
48 1 0.01
50 35 0.26
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (39 bp):
AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATAT
Found at i:85565763 original size:50 final size:50
Alignment explanation
Indices: 85565702--85565801 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
85565692 TTCCAGCACG
*
85565702 TAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
85565752 TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
85565802 CCCTAAGTCC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (50 bp):
TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
Found at i:85569672 original size:23 final size:23
Alignment explanation
Indices: 85569646--85569718 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
85569636 TTTTATCATG
85569646 AAGGCATCACAAATTTCACCATA
1 AAGGCATCACAAATTTCACCATA
* * *
85569669 AAGGTATCACAAAATAT-GCCATA
1 AAGGCATCAC-AAATTTCACCATA
* * * *
85569692 AATGCATCACAAAATACACCACA
1 AAGGCATCACAAATTTCACCATA
85569715 AAGG
1 AAGG
85569719 TTTTACAAAA
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
22 3 0.08
23 29 0.78
24 5 0.14
ACGTcount: A:0.48, C:0.23, G:0.11, T:0.18
Consensus pattern (23 bp):
AAGGCATCACAAATTTCACCATA
Found at i:85569718 original size:46 final size:46
Alignment explanation
Indices: 85569649--85569739 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
85569639 TATCATGAAG
* * * *
85569649 GCATCACAAATTTCACCATAAAGGTATCACAAAATATGCCATAAAT
1 GCATCACAAAATACACCACAAAGGTATCACAAAATACGCCATAAAT
* *
85569695 GCATCACAAAATACACCACAAAGGTTTTACAAAATACGCCATAAA
1 GCATCACAAAATACACCACAAAGGTATCACAAAATACGCCATAAA
85569740 GGCTTTGTAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.47, C:0.23, G:0.09, T:0.21
Consensus pattern (46 bp):
GCATCACAAAATACACCACAAAGGTATCACAAAATACGCCATAAAT
Found at i:85571916 original size:94 final size:91
Alignment explanation
Indices: 85571624--85571936 Score: 244
Period size: 94 Copynumber: 3.3 Consensus size: 91
85571614 GTAAAGTACC
* * * *
85571624 GATGCCATGTCCTAGACATGGTCTTACACTGGATATCATCTTCGA-GGCTGATGCCATGTCCCAG
1 GATG-CATGTCCCAGACAT-GTCTTACACT-GA-AACATC-TC-ATAGCCGATGCCATGTCCCAG
* *
85571688 ATATGGTCTTACACTAGCTCTCACATAACCGT-GTT
60 ACATGGTCTTACACTGGCTCT--CATAA--GTGGTT
* *
85571723 GATGCCATGTCCCAAACATGGTCTTACACTGAAACATCTCGTAGCCGATG-CATGTCCCAGACAT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGAAACATCTCATAGCCGATGCCATGTCCCAGACAT
* **
85571787 -GTCTTATACTGGCTTACGTCCCAA--GGTT
64 GGTCTTACACTGGC-T-C-TCATAAGTGGTT
* * ** *
85571815 GACGCATGTCCCAGACATGTCTTACAGTAGCACTCGTCTCA-ATGCCGATGCCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACT-G-AAACATCTCATA-GCCGATGCCATGTCCCAGACA
*
85571879 TGGTCTTACACTGGCTCTCATAATGTGGTC
63 TGGTCTTACACTGGCTCTCATAA-GTGGTT
*
85571909 GATGCATGTCCCAGACATGTTTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
85571937 CGCTCACACA
Statistics
Matches: 176, Mismatches: 25, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
90 9 0.05
91 19 0.11
92 20 0.11
93 15 0.09
94 51 0.29
95 17 0.10
96 9 0.05
97 6 0.03
98 2 0.01
99 28 0.16
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTGAAACATCTCATAGCCGATGCCATGTCCCAGACATGG
TCTTACACTGGCTCTCATAAGTGGTT
Found at i:85577196 original size:7 final size:6
Alignment explanation
Indices: 85577175--85577205 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
85577165 GACTTCTTTC
85577175 AAAATA AAAATA AAAATA AAAATA ATAAATA
1 AAAATA AAAATA AAAATA AAAATA A-AAATA
85577206 TTTAAACTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.79
7 5 0.21
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:85581031 original size:40 final size:40
Alignment explanation
Indices: 85580887--85581031 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 40
85580877 TACTCGAATG
* * * * *
85580887 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AGCGACC
* * * * * * *
85580928 ACATTCGGACTAAGATCCGAAGGTATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
* *
85580968 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
*
85581008 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
85581032 CTTGTGCGAG
Statistics
Matches: 85, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
40 60 0.71
41 25 0.29
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
Found at i:85595109 original size:40 final size:40
Alignment explanation
Indices: 85595065--85595253 Score: 324
Period size: 40 Copynumber: 4.7 Consensus size: 40
85595055 GCTACTTGCT
85595065 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
85595105 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* **
85595145 CAAATGCCTTCGGGACTCAGCCCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
85595185 CAAACGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
85595225 CAAATGCCTTCGGGACTCAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
85595254 CATCCGAATA
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:85599801 original size:35 final size:35
Alignment explanation
Indices: 85599746--85599875 Score: 161
Period size: 35 Copynumber: 3.7 Consensus size: 35
85599736 TATGTTTCAA
** * * * *
85599746 TGTGTTTCGGTTGGACTAGCTTTTATGAGTATTTG
1 TGTGTTTCGAATGGATTAGCTCTTATGAGCATTCG
* * * *
85599781 TGTGTTTTGAAGGGATTAGCTCTTATGAGCACTGG
1 TGTGTTTCGAATGGATTAGCTCTTATGAGCATTCG
*
85599816 TGTGTTTCGGATGGATTAGCTCTTATGAGCATTCG
1 TGTGTTTCGAATGGATTAGCTCTTATGAGCATTCG
85599851 TGTGTTTCGAATGGATTAGCTCTTA
1 TGTGTTTCGAATGGATTAGCTCTTA
85599876 ATAGAATCTT
Statistics
Matches: 80, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 80 1.00
ACGTcount: A:0.18, C:0.12, G:0.28, T:0.42
Consensus pattern (35 bp):
TGTGTTTCGAATGGATTAGCTCTTATGAGCATTCG
Found at i:85603167 original size:40 final size:40
Alignment explanation
Indices: 85603110--85603287 Score: 239
Period size: 40 Copynumber: 4.5 Consensus size: 40
85603100 ATCATCATAT
*
85603110 CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTAATC
1 CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTGATC
* * * * *
85603150 CAACCAAAACACGCCAAAAAAAAGCTCAGAAGAGCTGATC
1 CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTGATC
* * * *
85603190 CAACCTAAACACACCAAACAGAAGCTCTTAAGTGTTGATC
1 CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTGATC
* * *
85603230 CAACCGAAACACGCCAAACAGAAGCTCGTAAGAGTTGATC
1 CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTGATC
85603270 CAACCGAAACACACCAAA
1 CAACCGAAACACACCAAA
85603288 AAGAGAGTAT
Statistics
Matches: 119, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 119 1.00
ACGTcount: A:0.46, C:0.29, G:0.14, T:0.11
Consensus pattern (40 bp):
CAACCGAAACACACCAAACAGAAGCTCATAAGAGCTGATC
Found at i:85610738 original size:13 final size:13
Alignment explanation
Indices: 85610720--85610744 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85610710 TGTAAACATG
85610720 AAAATTTCTTAAC
1 AAAATTTCTTAAC
85610733 AAAATTTCTTAA
1 AAAATTTCTTAA
85610745 AATAATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATTTCTTAAC
Found at i:85613938 original size:15 final size:15
Alignment explanation
Indices: 85613918--85613948 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
85613908 GATGGATATA
85613918 TGATGAGGAATGAAT
1 TGATGAGGAATGAAT
85613933 TGATGAGGAATGAAT
1 TGATGAGGAATGAAT
85613948 T
1 T
85613949 AAGTACTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (15 bp):
TGATGAGGAATGAAT
Found at i:85624480 original size:19 final size:19
Alignment explanation
Indices: 85624452--85624488 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
85624442 TTAAAGGTTA
* *
85624452 AAATGGTAAAATAGTTAAT
1 AAATGATAAAATAATTAAT
85624471 AAATGATAAAATAATTAA
1 AAATGATAAAATAATTAA
85624489 ACACAAATGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (19 bp):
AAATGATAAAATAATTAAT
Found at i:85629040 original size:28 final size:28
Alignment explanation
Indices: 85628998--85629089 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
85628988 TGTACTAGAG
*
85628998 TACCCCTATGAATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
85629026 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
*
85629054 TACCCCTATGTATGCAAAATGACC-TCTA
1 TACCCCTATGTATGCAAAATTACCAT-TA
85629082 TACCCCTA
1 TACCCCTA
85629090 GGGTTAATTT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 1 0.02
28 60 0.98
ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATTA
Found at i:85629295 original size:29 final size:28
Alignment explanation
Indices: 85629205--85629284 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 28
85629195 CTGGTAGCTA
* *
85629205 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
* *
85629233 TGCCAC-ATATATATGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
85629260 TGCCACAAAATATCTGTATCTGGTG
1 TGCCACAAAATATCTGT-TCTGGTG
85629285 ACTCTGTCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.52
28 14 0.32
29 7 0.16
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGGCAC
Found at i:85629303 original size:55 final size:56
Alignment explanation
Indices: 85629205--85629309 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 56
85629195 CTGGTAGCTA
* *
85629205 TGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATATGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATATGTATCTGGTGGCAC
* * *
85629260 TGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTATGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATATGTATCTGG
85629310 CAGCCATGCT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
55 22 0.51
56 21 0.49
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATATGTATCTGGTGGCAC
Found at i:85629772 original size:19 final size:19
Alignment explanation
Indices: 85629748--85629786 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
85629738 TTTTAATTAT
* *
85629748 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
85629767 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
85629786 T
1 T
85629787 ATGATGGAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:85635830 original size:77 final size:71
Alignment explanation
Indices: 85635644--85635832 Score: 227
Period size: 71 Copynumber: 2.6 Consensus size: 71
85635634 GGGGAATCAT
* * *
85635644 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGG
85635709 ATACCG
66 ATACCG
* ***
85635715 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATACAATG
*
85635780 GATATCG
65 GATACCG
*
85635787 CACTTAGC-ACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCC
1 CACTTAGCAACC-CC--T---CCGGGGAATCAGCACATAGCAACCCC
85635833 TCGGGGAATC
Statistics
Matches: 103, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
71 48 0.47
72 30 0.29
74 1 0.01
77 24 0.23
ACGTcount: A:0.31, C:0.32, G:0.17, T:0.20
Consensus pattern (71 bp):
CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGG
ATACCG
Found at i:85635838 original size:26 final size:26
Alignment explanation
Indices: 85635808--85635858 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
85635798 ACCAATGAAC
*
85635808 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
85635834 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
85635859 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:85635898 original size:103 final size:104
Alignment explanation
Indices: 85635714--85635936 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
85635704 AATGGATACC
85635714 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
85635779 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
85635818 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
85635882 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
85635921 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
85635937 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.84
104 18 0.16
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:85636298 original size:29 final size:29
Alignment explanation
Indices: 85636265--85636328 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
85636255 TAATCCACCA
85636265 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
85636294 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
85636324 CCCAA
1 CCCAA
85636329 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:85636302 original size:30 final size:30
Alignment explanation
Indices: 85636272--85636328 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
85636262 CCACCCAACT
85636272 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
85636301 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
85636329 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:85643214 original size:27 final size:27
Alignment explanation
Indices: 85643182--85643233 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
85643172 CCACTGAATC
*
85643182 GGGGAATCAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACATAGCAACCCCTCG
85643209 GGGGAATCAGCACATAGCAACCCCT
1 GGGGAATCAGCACATAGCAACCCCT
85643234 TTCATTTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.33, G:0.25, T:0.13
Consensus pattern (27 bp):
GGGGAATCAGCACATAGCAACCCCTCG
Found at i:85643302 original size:69 final size:70
Alignment explanation
Indices: 85643191--85643340 Score: 248
Period size: 69 Copynumber: 2.1 Consensus size: 70
85643181 CGGGGAATCA
*
85643191 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTT-CATTTCAAATATACAATGG
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTACATTTCAAAGATACAATGG
85643255 ATATC
66 ATATC
***
85643260 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTT-ACATTTCAAAGATACAATG
85643325 GATATC
65 GATATC
85643331 GCACTTAGCA
1 GCACTTAGCA
85643341 CCACCAATGA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
69 45 0.60
71 30 0.40
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (70 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTACATTTCAAAGATACAATGG
ATATC
Found at i:85691756 original size:44 final size:43
Alignment explanation
Indices: 85691682--85691811 Score: 120
Period size: 44 Copynumber: 3.0 Consensus size: 43
85691672 CATAGGATTA
* *
85691682 CGATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGATTTCGTGAAAGACCACGTCTGGGACATTGGCAT
* * * *
85691725 CGATTTGTGATTTATGTGAAAGACTATGTCTGGGACATTGGCAT
1 CGATATGTGATTT-CGTGAAAGACCACGTCTGGGACATTGGCAT
* * ** * *
85691769 C-ATATATGATTTTGTTCAAGACC-CTGTCTGGGATAGTGGCAT
1 CGATATGTGATTTCGTGAAAGACCAC-GTCTGGGACATTGGCAT
85691811 C
1 C
85691812 AATAGTTGAT
Statistics
Matches: 71, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
42 24 0.34
43 21 0.30
44 26 0.37
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
CGATATGTGATTTCGTGAAAGACCACGTCTGGGACATTGGCAT
Found at i:85692267 original size:37 final size:37
Alignment explanation
Indices: 85692217--85692290 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
85692207 GTCAAGGAAG
85692217 TCCGTCACACTATCAATCGCTATTTTGGTATTTTATA
1 TCCGTCACACTATCAATCGCTATTTTGGTATTTTATA
*
85692254 TCCGTCACACTATCAATCGTTATTTTGGTATTTTATA
1 TCCGTCACACTATCAATCGCTATTTTGGTATTTTATA
85692291 AGTTTGAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.45
Consensus pattern (37 bp):
TCCGTCACACTATCAATCGCTATTTTGGTATTTTATA
Found at i:85701271 original size:3 final size:3
Alignment explanation
Indices: 85701255--85701311 Score: 50
Period size: 3 Copynumber: 19.7 Consensus size: 3
85701245 TTTCTGACAA
* *
85701255 TTC TT- TTC -TC TTC TTC TT- TTC TCC TCTC TTC ATC TAT- TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC TTC T-TC TTC TTC
85701298 TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TT
85701312 TTCCTCTATA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.16
3 34 0.77
4 3 0.07
ACGTcount: A:0.04, C:0.32, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:85702566 original size:28 final size:28
Alignment explanation
Indices: 85702526--85702641 Score: 146
Period size: 28 Copynumber: 4.2 Consensus size: 28
85702516 GGAGGAAGCG
*
85702526 TTCTGGTGGCTCTGCCACAAATATCGGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
85702554 TTCTGGTGGCTCTGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
85702582 TTCTGGTGGCCCTACCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
85702610 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
85702636 TTCTGG
1 TTCTGG
85702642 CAGCCATACT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
26 5 0.07
27 7 0.09
28 63 0.84
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:85708451 original size:18 final size:18
Alignment explanation
Indices: 85708428--85708465 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
85708418 TGGCCGAATG
85708428 TACATATACATATTTTGA
1 TACATATACATATTTTGA
85708446 TACATATACATATTTTGA
1 TACATATACATATTTTGA
85708464 TA
1 TA
85708466 AACCATCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (18 bp):
TACATATACATATTTTGA
Found at i:85716570 original size:44 final size:46
Alignment explanation
Indices: 85716454--85716573 Score: 124
Period size: 44 Copynumber: 2.6 Consensus size: 46
85716444 AGGGTACAAT
* *
85716454 GCCGATGCCATGTTCTAAACATGGTCTTACACTGGCTCACATAAATAA
1 GCCGATGCCATGTTCCAAACA-GGTCTTACACTGGCACACAT-AATAA
* *
85716502 GTCGATGCCATG-TCCTAGAA-AGGTCTTACACT-G-ACACAT-GTCAA
1 GCCGATGCCATGTTCC-A-AACAGGTCTTACACTGGCACACATAAT-AA
85716546 GCCGATGCCATGTTCCAAACAGGTCTTA
1 GCCGATGCCATGTTCCAAACAGGTCTTA
85716574 TACTAGCTTG
Statistics
Matches: 62, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
43 3 0.05
44 22 0.35
45 8 0.13
46 1 0.02
47 13 0.21
48 13 0.21
49 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (46 bp):
GCCGATGCCATGTTCCAAACAGGTCTTACACTGGCACACATAATAA
Found at i:85716620 original size:48 final size:47
Alignment explanation
Indices: 85716546--85716720 Score: 142
Period size: 46 Copynumber: 3.7 Consensus size: 47
85716536 CACATGTCAA
* * * *
85716546 GCCGATGCCATGTTCCAAACAGGTCTTATACTAGCTTGCATATCTCGAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTT-CATATCTCGAG
* * * *
85716595 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TC-TCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCAT-ATCTCGAG
* * * * * *
85716641 GCTGATGCATGTCCCAGACATATCTTACAATGGCTCTCATA-AT-GTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TCATATCTCGAG
* *
85716687 GCCGATGCATGTCCTAGATATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
85716721 AGACATATCA
Statistics
Matches: 100, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 65 0.65
47 2 0.02
48 24 0.24
49 8 0.08
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCATATCTCGAG
Found at i:85717407 original size:20 final size:18
Alignment explanation
Indices: 85717370--85717412 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
85717360 CTATAGCAAC
85717370 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
85717387 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
85717407 TTACAA
1 TCACAA
85717413 ACTTTACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:85722316 original size:39 final size:40
Alignment explanation
Indices: 85722216--85722400 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
85722206 TCGAATGATG
* * *
85722216 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
85722255 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
85722296 TCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
85722335 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
85722374 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
85722401 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:85722423 original size:79 final size:79
Alignment explanation
Indices: 85722269--85722433 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
85722259 GGACTAAGAT
* **
85722269 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
85722334 ATCCGGGTTAAGTC
66 ATCCGAGTTAAATC
* * *
85722348 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
85722411 TATATCC-AGTTAAATT
63 TAAATCCGAGTTAAATC
85722427 CCGAAGG
1 CCGAAGG
85722434 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAATC
Found at i:85729042 original size:48 final size:48
Alignment explanation
Indices: 85728967--85729197 Score: 206
Period size: 48 Copynumber: 4.9 Consensus size: 48
85728957 ACTTTAGTAG
* * * *
85728967 GATGCCAATGCCATATCCCAAATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCACATATC
*
85729015 GATGCCAATGTCATGTCCCAGACATGGTCTTATATGGGATCATACATATC
1 GATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATC--ACATATC
* * * * * *
85729065 GAAGCCGA--T-A-G-CCCA-ACTATGGTCTTACACGATG-TCTCATATT
1 GATGCCAATGTCATGTCCCAGAC-ATGGTCTTACATG-GGATCACATATC
* * * * * *
85729108 AATGCCACTGCCATGTCCTAGACATGGTCTTACATGGGATCATATTTC
1 GATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* *
85729156 GATGCCTATGTCATGTCCCGGACATGGTCTTACATGGGATCA
1 GATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCA
85729198 TGCATATCCC
Statistics
Matches: 142, Mismatches: 30, Indels: 22
0.73 0.15 0.11
Matches are distributed among these distances:
43 9 0.06
44 2 0.01
45 17 0.12
46 3 0.02
47 3 0.02
48 93 0.65
49 2 0.01
50 13 0.09
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:85734197 original size:47 final size:44
Alignment explanation
Indices: 85734093--85734355 Score: 178
Period size: 47 Copynumber: 5.7 Consensus size: 44
85734083 TACGCGTGCT
* *
85734093 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-AGCC
1 GATGCATGTCCCAGACATGTCTTACACT-G-GCATCTCTGTGAGCC
* * *
85734137 AAAGCATGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ATCTCTGT-GA-GCC
* * * *
85734184 GATGCATGTCCCAGACATGGTCTTACACTGGTTATCAT-AGTATAGCT
1 GATGCATGTCCCAGACAT-GTCTTACACTGG-CATC-TCTGT-GAGCC
* * * * * *
85734231 GACGCATGTCCCAGACATGTCTTTCACTAGCCCTTGTCTG-GATACC
1 GATGCATGTCCCAGACATGTCTTACACT-G-GCATCTCTGTGA-GCC
85734277 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATAATGTG-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTC----TGTGAGCC
*
85734325 GAAGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
85734356 GCACAAATTG
Statistics
Matches: 171, Mismatches: 29, Indels: 36
0.72 0.12 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.04
44 26 0.15
45 4 0.02
46 29 0.17
47 69 0.40
48 32 0.19
49 3 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCATCTCTGTGAGCC
Found at i:85734286 original size:94 final size:93
Alignment explanation
Indices: 85734093--85734352 Score: 280
Period size: 94 Copynumber: 2.8 Consensus size: 93
85734083 TACGCGTGCT
* * * *
85734093 GATGCATGTCCCAGACAT-GTCTTACACTAGC-A-CA-ACTCTTAGCCAAAGCATGTCCCAGACA
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATAAT-ATAGCCGAAGCATGTCCCAGACA
* * * **
85734154 CGTCTTACACT-G-GCTATCTCTGTCGAGGCC
65 TGTCTTACACTAGCCCT-TGTCTG--GATACC
* * * *
85734184 GATGCATGTCCCAGACATGGTCTTACACTGGTTATCATAGTATAGCTGACGCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATAGCCGAAGCATGTCCCAGACAT
*
85734249 GTCTTTCACTAGCCCTTGTCTGGATACC
66 GTCTTACACTAGCCCTTGTCTGGATACC
* * *
85734277 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGACA
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTATCATAATATAGCCGAAGCATGTCCCAGACA
85734342 TGTCTTACACT
65 TGTCTTACACT
85734353 GGCGCACAAA
Statistics
Matches: 141, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
91 18 0.13
92 11 0.08
93 9 0.06
94 93 0.66
95 8 0.06
96 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATAGCCGAAGCATGTCCCAGACAT
GTCTTACACTAGCCCTTGTCTGGATACC
Found at i:85742757 original size:50 final size:51
Alignment explanation
Indices: 85742680--85742808 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
85742670 GACCATGGCA
*
85742680 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAA-TG
*
85742731 A-AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
* *
85742781 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCAGCTAC
85742809 GTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 44 0.61
51 28 0.39
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
Found at i:85742822 original size:31 final size:31
Alignment explanation
Indices: 85742784--85742932 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
85742774 ACAAATGACA
* * *
85742784 AGTGAAAAGTGGTAGCTTCAGCTACGTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
85742815 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
85742846 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
85742877 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* ** *
85742908 AATGAGTAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
85742933 AAGTGACAAG
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 109 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:85743027 original size:47 final size:46
Alignment explanation
Indices: 85742957--85743080 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
85742947 AAGTGATTTC
* * *
85742957 CGTATAAGACCATATCTAGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
85743003 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
85743050 CGTGTAAGACCATAGCTGGGCTATGGCATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
85743081 ATATATGAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
46 27 0.40
47 40 0.60
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:85743158 original size:42 final size:42
Alignment explanation
Indices: 85743051--85743165 Score: 144
Period size: 42 Copynumber: 2.7 Consensus size: 42
85743041 TATGTGATTC
* *
85743051 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGAGCTATGGCATCGATATATGAAGAT
* *
85743093 GTGTAAGACCAGAGCT-AGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGA-GCTATGGCATCGA-TATATGAAGAT
* *
85743135 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGAGCTATGGCATCGA
85743166 GAAAACGAAG
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
41 1 0.02
42 59 0.95
43 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGAGCTATGGCATCGATATATGAAGAT
Found at i:85743373 original size:26 final size:26
Alignment explanation
Indices: 85743337--85743389 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
85743327 GAATGTACTG
*
85743337 TCCATATGTATTGATAATTCAAATGT
1 TCCATACGTATTGATAATTCAAATGT
85743363 TCCATACGTATTGATAATTCAAATGT
1 TCCATACGTATTGATAATTCAAATGT
85743389 T
1 T
85743390 TTAATGAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (26 bp):
TCCATACGTATTGATAATTCAAATGT
Found at i:85744710 original size:47 final size:46
Alignment explanation
Indices: 85744605--85744819 Score: 176
Period size: 47 Copynumber: 4.7 Consensus size: 46
85744595 TACGCGTGCT
* *
85744605 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-A-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-TATCTCTGTAAGGCC
* * *
85744649 GAAGC-TGTCCCAGACACGTCTTACACTGGCTATCTCTGTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTATCTCTGT-AAGGCC
* * *
85744695 GATGCATGTCCCAGACATGTCTTACAC-AGGC-A-CTCATGTCTATGTC
1 GATGCATGTCCCAGACATGTCTTACACTA-GCTATCTC-TGT-AAGGCC
* * * *
85744741 GATGCCATGTCCCAGATATGGTCTTACACTAGCTATCAT-AGTATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTATC-TCTGTAAGGCC
* *
85744789 GACGCATGTCCCAAACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
85744820 CCTTGTTTGG
Statistics
Matches: 137, Mismatches: 21, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
42 5 0.04
43 24 0.18
44 4 0.03
45 4 0.03
46 32 0.23
47 47 0.34
48 15 0.11
49 4 0.03
50 1 0.01
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTATCTCTGTAAGGCC
Found at i:85744838 original size:94 final size:94
Alignment explanation
Indices: 85744740--85744910 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 94
85744730 ATGTCTATGT
* * * ** *
85744740 CGATGCCATGTCCCAGATATGGTCTTACAC-TAGCTATCATAGTATGGCTGACGCATGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCCTACACAT-GCTATCATAATATGGCCAAAGCATGTCCCAAA
85744804 CATGTCTTACACTAGCCCTTGTTTGGATAC
65 CATGTCTTACACTAGCCCTTGTTTGGATAC
* * * *
85744834 CGATGTCATGTCCCAGACATGGTCCTACACATGCTCTCATAATGTGGCCAAAGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCCTACACATGCTATCATAATATGGCCAAAGCATGTCCCAAAC
85744899 ATGTCTTACACT
66 ATGTCTTACACT
85744911 GGCGTAAAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
94 65 0.98
95 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCCTACACATGCTATCATAATATGGCCAAAGCATGTCCCAAAC
ATGTCTTACACTAGCCCTTGTTTGGATAC
Found at i:85745293 original size:30 final size:30
Alignment explanation
Indices: 85745259--85745369 Score: 206
Period size: 30 Copynumber: 3.7 Consensus size: 30
85745249 CATCTTTGGT
85745259 AAAATGACCATTTTGCCCC-AAGACTTTGAC
1 AAAATGACCATTTTGCCCCTAA-ACTTTGAC
85745289 AAAATGACCATTTTGCCCCTAAACTTTGAC
1 AAAATGACCATTTTGCCCCTAAACTTTGAC
85745319 AAAATGACCATTTTGCCCCTAAACTTTGAC
1 AAAATGACCATTTTGCCCCTAAACTTTGAC
85745349 AAAATGACCATTTTGCCCCTA
1 AAAATGACCATTTTGCCCCTA
85745370 TGCTCGAAAA
Statistics
Matches: 80, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
30 78 0.98
31 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (30 bp):
AAAATGACCATTTTGCCCCTAAACTTTGAC
Found at i:85762297 original size:19 final size:18
Alignment explanation
Indices: 85762256--85762290 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
85762246 TTCTTGTCAA
* *
85762256 AAAATAATTAATTTTTAT
1 AAAATAATTAAATTGTAT
85762274 AAAATAATTAAATTGTA
1 AAAATAATTAAATTGTA
85762291 CTTAAATTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
AAAATAATTAAATTGTAT
Found at i:85762333 original size:12 final size:11
Alignment explanation
Indices: 85762309--85762348 Score: 57
Period size: 10 Copynumber: 3.7 Consensus size: 11
85762299 ATGAAAATTT
85762309 TTAA-TTTTAA
1 TTAATTTTTAA
85762319 TTAATTTTATAA
1 TTAATTTT-TAA
85762331 TTAATTTTT-A
1 TTAATTTTTAA
85762341 TTAATTTT
1 TTAATTTT
85762349 GGTTATTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 13 0.46
11 4 0.14
12 11 0.39
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTAATTTTTAA
Found at i:85762921 original size:19 final size:19
Alignment explanation
Indices: 85762893--85762936 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
85762883 CTCATTTACA
*
85762893 TCTCTTCTCTCACAATTCT
1 TCTCTCCTCTCACAATTCT
** *
85762912 TCTCTCCTCTTTCAATTTT
1 TCTCTCCTCTCACAATTCT
85762931 TCTCTC
1 TCTCTC
85762937 ATCTTTTGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.11, C:0.36, G:0.00, T:0.52
Consensus pattern (19 bp):
TCTCTCCTCTCACAATTCT
Found at i:85762941 original size:19 final size:19
Alignment explanation
Indices: 85762905--85762942 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
85762895 TCTTCTCTCA
*
85762905 CAATTCTTCTCTCCTCTTT
1 CAATTCTTCTCTCATCTTT
*
85762924 CAATTTTTCTCTCATCTTT
1 CAATTCTTCTCTCATCTTT
85762943 TGCATTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.32, G:0.00, T:0.55
Consensus pattern (19 bp):
CAATTCTTCTCTCATCTTT
Found at i:85766974 original size:13 final size:13
Alignment explanation
Indices: 85766956--85766981 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85766946 TGTTTATTAT
85766956 ACTAATTAACTAA
1 ACTAATTAACTAA
85766969 ACTAATTAACTAA
1 ACTAATTAACTAA
85766982 TTAAACTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
ACTAATTAACTAA
Found at i:85771417 original size:7 final size:7
Alignment explanation
Indices: 85771405--85771430 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
85771395 ATAAATGTTT
85771405 TTTTTTA
1 TTTTTTA
85771412 TTTTTTA
1 TTTTTTA
85771419 TTTTTTA
1 TTTTTTA
85771426 TTTTT
1 TTTTT
85771431 CAACTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:85782233 original size:19 final size:19
Alignment explanation
Indices: 85782205--85782241 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
85782195 TTAAAGGTTA
* *
85782205 AAATGCTAAAATAGTTAAT
1 AAATGATAAAATAATTAAT
85782224 AAATGATAAAATAATTAA
1 AAATGATAAAATAATTAA
85782242 AACGAAGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (19 bp):
AAATGATAAAATAATTAAT
Found at i:85783181 original size:24 final size:23
Alignment explanation
Indices: 85783122--85783227 Score: 70
Period size: 24 Copynumber: 4.3 Consensus size: 23
85783112 GCAGACTCAC
* *
85783122 CTCAACTCGTATGAGCTTACCGATAT
1 CTCAGCTCGTA-GAGCTTACTG-T-T
*
85783148 ATCAGCTCGTACGAGCTTACTGTT
1 CTCAGCTCGTA-GAGCTTACTGTT
* *
85783172 CTCAGCTCGTTGGTGCTTACTGTT
1 CTCAGCTCG-TAGAGCTTACTGTT
* * *
85783196 -TTAGCTCAATAGAGCTTACTGTC
1 CTCAGCTC-GTAGAGCTTACTGTT
85783219 CATCAGCTC
1 C-TCAGCTC
85783228 AGGAGGAGCT
Statistics
Matches: 63, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
23 17 0.27
24 20 0.32
25 8 0.13
26 18 0.29
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (23 bp):
CTCAGCTCGTAGAGCTTACTGTT
Found at i:85792194 original size:16 final size:16
Alignment explanation
Indices: 85792173--85792246 Score: 51
Period size: 16 Copynumber: 4.4 Consensus size: 16
85792163 ACAATCTGAC
85792173 GAAAAAACACAAAAAAG
1 GAAAAAA-ACAAAAAAG
*
85792190 GAAAAAAATAAAAAAG
1 GAAAAAAACAAAAAAG
*
85792206 AATCAACAAAACAAAAAAG
1 GA--AA-AAAACAAAAAAG
* * **
85792225 TAGAAAAAGGAAAAA-
1 GAAAAAAACAAAAAAG
85792240 GAAAAAA
1 GAAAAAA
85792247 GAAAAAGAGA
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
15 5 0.11
16 18 0.40
17 8 0.18
18 2 0.04
19 12 0.27
ACGTcount: A:0.77, C:0.07, G:0.12, T:0.04
Consensus pattern (16 bp):
GAAAAAAACAAAAAAG
Found at i:85794712 original size:23 final size:23
Alignment explanation
Indices: 85794686--85794732 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
85794676 TCTAGATAGA
85794686 ATAACTGATTAATCATATAATCC
1 ATAACTGATTAATCATATAATCC
*
85794709 ATAACTGATTACTCATATAATCC
1 ATAACTGATTAATCATATAATCC
85794732 A
1 A
85794733 ACCTAAATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.19, G:0.04, T:0.34
Consensus pattern (23 bp):
ATAACTGATTAATCATATAATCC
Found at i:85796960 original size:21 final size:20
Alignment explanation
Indices: 85796934--85796972 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
85796924 ATGTAATAAT
85796934 ATATATTAAAACTATTAATAC
1 ATATATT-AAACTATTAATAC
*
85796955 ATATATTTAACTATTAAT
1 ATATATTAAACTATTAAT
85796973 TGGTCATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (20 bp):
ATATATTAAACTATTAATAC
Found at i:85804652 original size:7 final size:7
Alignment explanation
Indices: 85804642--85804675 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
85804632 ATCCAATATC
85804642 CACATTT
1 CACATTT
85804649 CACATTT
1 CACATTT
85804656 CACATTT
1 CACATTT
85804663 CACATTT
1 CACATTT
85804670 CACATT
1 CACATT
85804676 AATCACAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (7 bp):
CACATTT
Found at i:85808938 original size:51 final size:51
Alignment explanation
Indices: 85808867--85809034 Score: 228
Period size: 51 Copynumber: 3.2 Consensus size: 51
85808857 CTGATCACAT
85808867 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
85808918 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * *
85808969 TTGTCACTTGTCACTTATCACTGATCAGATAAGTGTAACTGAGGCTACCACTTATCAC
1 -T-T-A----TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
85809027 TTGTCACT
1 TTATCACT
85809035 GATCAGAGTA
Statistics
Matches: 105, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
51 56 0.53
52 1 0.01
53 1 0.01
54 1 0.01
56 1 0.01
57 1 0.01
58 44 0.42
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:85808970 original size:58 final size:58
Alignment explanation
Indices: 85808908--85809039 Score: 201
Period size: 58 Copynumber: 2.3 Consensus size: 58
85808898 CTAAAGCTAC
* * *
85808908 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTGTCACTTATCACTTATCACTGATCAGATAAGTGTAACTAAAGCTACCACTTAT
* * *
85808966 CACTTGTCACTTGTCACTTATCACTGATCAGATAAGTGTAACTGAGGCTACCACTTAT
1 CACTTGTCACTTATCACTTATCACTGATCAGATAAGTGTAACTAAAGCTACCACTTAT
*
85809024 CACTTGTCACTGATCA
1 CACTTGTCACTTATCA
85809040 GAGTACTCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (58 bp):
CACTTGTCACTTATCACTTATCACTGATCAGATAAGTGTAACTAAAGCTACCACTTAT
Found at i:85816790 original size:15 final size:15
Alignment explanation
Indices: 85816770--85816801 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
85816760 TCACACACGG
*
85816770 GCGTGTCCCTGTCGA
1 GCGTGTCCCTGCCGA
85816785 GCGTGTCCCTGCCGA
1 GCGTGTCCCTGCCGA
85816800 GC
1 GC
85816802 CCAAGTTGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.38, G:0.34, T:0.22
Consensus pattern (15 bp):
GCGTGTCCCTGCCGA
Found at i:85828486 original size:16 final size:16
Alignment explanation
Indices: 85828465--85828503 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
85828455 TACTTTCTCC
85828465 TTCTTTCCTTCCCTTT
1 TTCTTTCCTTCCCTTT
* *
85828481 TTCTTTTCTTTCCTTT
1 TTCTTTCCTTCCCTTT
*
85828497 TTGTTTC
1 TTCTTTC
85828504 TTTCTTTTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (16 bp):
TTCTTTCCTTCCCTTT
Found at i:85834517 original size:85 final size:85
Alignment explanation
Indices: 85834374--85834544 Score: 342
Period size: 85 Copynumber: 2.0 Consensus size: 85
85834364 CCTCTGTTAC
85834374 ATTCTTCAGCGTCTTCCACTCAACAATAGCAGATATCTTATTTGGATCAAGTCGGATGTTATCAC
1 ATTCTTCAGCGTCTTCCACTCAACAATAGCAGATATCTTATTTGGATCAAGTCGGATGTTATCAC
85834439 CCGACACAATGTGACCGAGG
66 CCGACACAATGTGACCGAGG
85834459 ATTCTTCAGCGTCTTCCACTCAACAATAGCAGATATCTTATTTGGATCAAGTCGGATGTTATCAC
1 ATTCTTCAGCGTCTTCCACTCAACAATAGCAGATATCTTATTTGGATCAAGTCGGATGTTATCAC
85834524 CCGACACAATGTGACCGAGG
66 CCGACACAATGTGACCGAGG
85834544 A
1 A
85834545 ATCTAACCTC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (85 bp):
ATTCTTCAGCGTCTTCCACTCAACAATAGCAGATATCTTATTTGGATCAAGTCGGATGTTATCAC
CCGACACAATGTGACCGAGG
Found at i:85837649 original size:11 final size:11
Alignment explanation
Indices: 85837633--85837658 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
85837623 ATTTAGGGGC
85837633 ACACGGCCAAG
1 ACACGGCCAAG
85837644 ACACGGCCAAG
1 ACACGGCCAAG
85837655 ACAC
1 ACAC
85837659 ACGCCCGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.38, G:0.23, T:0.00
Consensus pattern (11 bp):
ACACGGCCAAG
Found at i:85840610 original size:19 final size:19
Alignment explanation
Indices: 85840575--85840612 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
85840565 AATCACAACA
*
85840575 TATCTCATTTTTCATTCAC
1 TATCTCATTTTACATTCAC
85840594 TATCTCA-TTTACAATTCAC
1 TATCTCATTTTAC-ATTCAC
85840613 ATACAATACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (19 bp):
TATCTCATTTTACATTCAC
Found at i:85841785 original size:32 final size:32
Alignment explanation
Indices: 85841749--85841811 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
85841739 GTTTCTACAT
*
85841749 ACTA-TACTATTAATATAATTATTATCATTATA
1 ACTATTACTATT-ATATAACTATTATCATTATA
*
85841781 ACTATTATTATTATATAACTATTATCATTAT
1 ACTATTACTATTATATAACTATTATCATTAT
85841812 TATATAACAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 22 0.79
33 6 0.21
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (32 bp):
ACTATTACTATTATATAACTATTATCATTATA
Found at i:85841799 original size:17 final size:17
Alignment explanation
Indices: 85841766--85841811 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
85841756 TATTAATATA
*
85841766 ATTATTATCATTATAACT
1 ATTATTATTA-TATAACT
85841784 ATTATTATTATATAACT
1 ATTATTATTATATAACT
*
85841801 ATTATCATTAT
1 ATTATTATTAT
85841812 TATATAACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTATTATTATATAACT
Found at i:85842346 original size:25 final size:24
Alignment explanation
Indices: 85842309--85842360 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
85842299 TTTTTTTTTG
85842309 AAACTAAAAAAATAGAACAATAAAA
1 AAACTAAAAAAAT-GAACAATAAAA
* * *
85842334 AAACTTAATAAATTAACAATAAAA
1 AAACTAAAAAAATGAACAATAAAA
85842358 AAA
1 AAA
85842361 TTTTAAACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.73, C:0.08, G:0.02, T:0.17
Consensus pattern (24 bp):
AAACTAAAAAAATGAACAATAAAA
Found at i:85858956 original size:32 final size:32
Alignment explanation
Indices: 85858915--85859005 Score: 114
Period size: 30 Copynumber: 2.9 Consensus size: 32
85858905 TTTTTCATTC
*
85858915 AAGTTGGTATTTGTTATCATTTCACATAATTA
1 AAGTTGGTATTTGTTATCATTTCACAAAATTA
* *
85858947 AAGTTGGTATTTG--CTCATTTTACAAAATTA
1 AAGTTGGTATTTGTTATCATTTCACAAAATTA
* * *
85858977 AAGTTGATATCTGTTATAATTTCACAAAA
1 AAGTTGGTATTTGTTATCATTTCACAAAA
85859006 CCACACATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
30 25 0.51
32 24 0.49
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (32 bp):
AAGTTGGTATTTGTTATCATTTCACAAAATTA
Found at i:85867395 original size:19 final size:20
Alignment explanation
Indices: 85867357--85867397 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
85867347 TTTGTGAAAA
*
85867357 TGTGAAAATGTGGTTAAATG
1 TGTGAAAATGTGGATAAATG
*
85867377 TGTGAAAA-GTTGATAAATG
1 TGTGAAAATGTGGATAAATG
85867396 TG
1 TG
85867398 GACTGCTAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.34
Consensus pattern (20 bp):
TGTGAAAATGTGGATAAATG
Found at i:85867998 original size:77 final size:77
Alignment explanation
Indices: 85867914--85868077 Score: 197
Period size: 77 Copynumber: 2.1 Consensus size: 77
85867904 AGTTATACCG
* * * * * *
85867914 ATTTGGCTTCAAG-CCATGAATATCGACTGATTTGGCTTTGGG-TCATAATATCAGTACTTCGGG
1 ATTTGGCTTC-AGTCCACGAATATCAACTGATTTGGCTTCGGGCT-ATAATATCAATACTTCAGA
85867977 TATAAGTTACCTTA
64 TATAAGTTACCTTA
* * * *
85867991 ATTTGGCTTCGGTCCACGACTATCAATTGATTTGGCTTCGGGCTATGATATCAATACTTCAGATA
1 ATTTGGCTTCAGTCCACGAATATCAACTGATTTGGCTTCGGGCTATAATATCAATACTTCAGATA
*
85868056 TAAGTTACCTTG
66 TAAGTTACCTTA
85868068 ATTTGGCTTC
1 ATTTGGCTTC
85868078 GGGCTATGGT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
76 1 0.01
77 72 0.97
78 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.37
Consensus pattern (77 bp):
ATTTGGCTTCAGTCCACGAATATCAACTGATTTGGCTTCGGGCTATAATATCAATACTTCAGATA
TAAGTTACCTTA
Found at i:85868554 original size:46 final size:46
Alignment explanation
Indices: 85868487--85868588 Score: 204
Period size: 46 Copynumber: 2.2 Consensus size: 46
85868477 ACCTTTAAGC
85868487 TTATGTTTTGAGTATATGGCATGTATAGGGACTTTGATCATGTTGG
1 TTATGTTTTGAGTATATGGCATGTATAGGGACTTTGATCATGTTGG
85868533 TTATGTTTTGAGTATATGGCATGTATAGGGACTTTGATCATGTTGG
1 TTATGTTTTGAGTATATGGCATGTATAGGGACTTTGATCATGTTGG
85868579 TTATGTTTTG
1 TTATGTTTTG
85868589 GTAATGATTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 56 1.00
ACGTcount: A:0.21, C:0.06, G:0.27, T:0.46
Consensus pattern (46 bp):
TTATGTTTTGAGTATATGGCATGTATAGGGACTTTGATCATGTTGG
Found at i:85870015 original size:73 final size:73
Alignment explanation
Indices: 85869896--85870041 Score: 267
Period size: 73 Copynumber: 2.0 Consensus size: 73
85869886 TAATTTGCCG
85869896 CTCACTTTGCGAAAAGTTCCTCCAAACAGAAGTATGTCTCTCTCACAATCGATGTTATCAGCAAA
1 CTCACTTTGCGAAAAGTTCCTCCAAACAGAAGTATGTCTCTCTCACAATCGATGTTATCAGCAAA
85869961 TGACGCAT
66 TGACGCAT
*
85869969 CTCACTTTGGGAAAAGTT-CTGCCAAACAGAAGTATGTCTCTCTCACAATCGATGTTATCAGCAA
1 CTCACTTTGCGAAAAGTTCCT-CCAAACAGAAGTATGTCTCTCTCACAATCGATGTTATCAGCAA
85870033 ATGACGCAT
65 ATGACGCAT
85870042 TCTCTTTAAA
Statistics
Matches: 71, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
72 2 0.03
73 69 0.97
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (73 bp):
CTCACTTTGCGAAAAGTTCCTCCAAACAGAAGTATGTCTCTCTCACAATCGATGTTATCAGCAAA
TGACGCAT
Found at i:85872246 original size:13 final size:13
Alignment explanation
Indices: 85872228--85872256 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
85872218 GTTTTATTAC
85872228 TATACTATACTCA
1 TATACTATACTCA
85872241 TATACTATACTCA
1 TATACTATACTCA
85872254 TAT
1 TAT
85872257 TTAAGATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (13 bp):
TATACTATACTCA
Found at i:85878245 original size:13 final size:13
Alignment explanation
Indices: 85878227--85878252 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85878217 ATATTATAAT
85878227 TATTTTATGTTAA
1 TATTTTATGTTAA
85878240 TATTTTATGTTAA
1 TATTTTATGTTAA
85878253 AAAAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:85879682 original size:40 final size:40
Alignment explanation
Indices: 85879636--85879799 Score: 269
Period size: 40 Copynumber: 4.1 Consensus size: 40
85879626 ACTAAGATCT
85879636 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
85879676 AAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
85879716 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
85879756 GAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCC
1 GAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCC
85879795 GAAGG
1 GAAGG
85879800 TACTTGGGTT
Statistics
Matches: 117, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 15 0.13
40 100 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
Found at i:85890136 original size:42 final size:43
Alignment explanation
Indices: 85890044--85890157 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
85890034 CAATGCCAAC
* * ***
85890044 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCTCT
1 GTCCCAGACGTGGCCTTACATGAAATCAAATATCGATGCAAAT
*
85890087 GTCCCAGACAG-GGCCTTACATGAAATCAGATA-CGATGCAAAT
1 GTCCCAGAC-GTGGCCTTACATGAAATCAAATATCGATGCAAAT
* *
85890129 GTCCCAGACGTGGTCTTACACGTAAATCA
1 GTCCCAGACGTGGCCTTACATG-AAATCA
85890158 TAAGTCAATG
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 33 0.55
44 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
GTCCCAGACGTGGCCTTACATGAAATCAAATATCGATGCAAAT
Found at i:85897242 original size:43 final size:42
Alignment explanation
Indices: 85897192--85897282 Score: 112
Period size: 42 Copynumber: 2.1 Consensus size: 42
85897182 CTTACATGGG
* *
85897192 ATCTCATATCGATGCCAATAGCCCAGCTATGATCTTACACG-A
1 ATCTCATATCGAT-CCAATAGCCCAGATATGACCTTACACGTA
* * *
85897234 AGTCTCATATCGATCCCATATCCCAGATATGGCCTTACACGTA
1 A-TCTCATATCGATCCAATAGCCCAGATATGACCTTACACGTA
85897277 ATCTCA
1 ATCTCA
85897283 AATAAACCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 28 0.67
43 14 0.33
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (42 bp):
ATCTCATATCGATCCAATAGCCCAGATATGACCTTACACGTA
Found at i:85897272 original size:42 final size:43
Alignment explanation
Indices: 85897165--85897282 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 43
85897155 ATACCAATGT
* * *
85897165 CATATACCAGATATGGTCTTACATG-GGATCTCATATCGATGCC
1 CATATCCCAGATATGGTCTTACACGAAG-TCTCATATCGATGCC
* * * *
85897208 AATAGCCCAGCTATGATCTTACACGAAGTCTCATATCGAT-CC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATGCC
*
85897250 CATATCCCAGATATGGCCTTACACGTAA-TCTCA
1 CATATCCCAGATATGGTCTTACACG-AAGTCTCA
85897283 AATAAACCAA
Statistics
Matches: 61, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
42 27 0.44
43 33 0.54
44 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (43 bp):
CATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATGCC
Found at i:85902301 original size:13 final size:13
Alignment explanation
Indices: 85902283--85902307 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85902273 GGTTTGTTTA
85902283 TTAAACTAATTAT
1 TTAAACTAATTAT
85902296 TTAAACTAATTA
1 TTAAACTAATTA
85902308 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:85904864 original size:41 final size:41
Alignment explanation
Indices: 85904807--85904888 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
85904797 AACGTTAGGT
*
85904807 TTCATGTTCATCCCCCCACACTTAAGATGTACATTGCCCTC
1 TTCATGTTCATCCCCCCACACTAAAGATGTACATTGCCCTC
85904848 TTCATGTTCATCCCCCCACACTAAAGATGTACATTGCCCTC
1 TTCATGTTCATCCCCCCACACTAAAGATGTACATTGCCCTC
85904889 AATGTACAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.23, C:0.37, G:0.10, T:0.30
Consensus pattern (41 bp):
TTCATGTTCATCCCCCCACACTAAAGATGTACATTGCCCTC
Found at i:85905261 original size:17 final size:17
Alignment explanation
Indices: 85905239--85905303 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
85905229 TATGTCTTTC
* *
85905239 AAAATAAAATTGAAATG
1 AAAATAAAAATAAAATG
85905256 AAAATAAAAATCAAAA-G
1 AAAATAAAAAT-AAAATG
85905273 AAAAATAAAAATAAAAT-
1 -AAAATAAAAATAAAATG
85905290 AAAAT-AAAATAAAA
1 AAAATAAAAATAAAA
85905304 CTAAATAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
15 9 0.21
16 5 0.12
17 15 0.35
18 14 0.33
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.17
Consensus pattern (17 bp):
AAAATAAAAATAAAATG
Found at i:85905264 original size:5 final size:5
Alignment explanation
Indices: 85905239--85905313 Score: 62
Period size: 5 Copynumber: 13.8 Consensus size: 5
85905229 TATGTCTTTC
* *
85905239 AAAAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT AAAAAT AAAAT
1 AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT -AAAAT AAAAT
85905290 AAAAT AAAAT AAAACT -AAAT AAAA
1 AAAAT AAAAT AAAA-T AAAAT AAAA
85905314 AATAGGAGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
4 1 0.02
5 30 0.52
6 27 0.47
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:85905266 original size:12 final size:11
Alignment explanation
Indices: 85905239--85905314 Score: 68
Period size: 11 Copynumber: 6.9 Consensus size: 11
85905229 TATGTCTTTC
*
85905239 AAAATAAAATT
1 AAAATAAAAAT
* *
85905250 GAAATGAAAAT
1 AAAATAAAAAT
85905261 AAAAATCAAAAGA-
1 -AAAAT-AAAA-AT
85905274 AAAATAAAAAT
1 AAAATAAAAAT
85905285 AAAAT-AAAAT
1 AAAATAAAAAT
*
85905295 AAAATAAAACT
1 AAAATAAAAAT
85905306 -AAATAAAAA
1 AAAATAAAAA
85905315 ATAGGAGGAT
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
10 19 0.36
11 21 0.40
12 9 0.17
13 3 0.06
14 1 0.02
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:85910732 original size:13 final size:13
Alignment explanation
Indices: 85910714--85910738 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85910704 GGTTTGTTTA
85910714 TTAAACTAATTAT
1 TTAAACTAATTAT
85910727 TTAAACTAATTA
1 TTAAACTAATTA
85910739 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:85918325 original size:21 final size:21
Alignment explanation
Indices: 85918286--85918325 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
85918276 AATGCTTGAG
* *
85918286 ATTTTGAATGATTGTTGATGA
1 ATTTTGAAAGATTGATGATGA
*
85918307 ATTTTGAAAGCTTGATGAT
1 ATTTTGAAAGATTGATGAT
85918326 AGATATTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.23, T:0.45
Consensus pattern (21 bp):
ATTTTGAAAGATTGATGATGA
Found at i:85930681 original size:44 final size:44
Alignment explanation
Indices: 85930481--85930831 Score: 271
Period size: 44 Copynumber: 7.8 Consensus size: 44
85930471 AGTGAGTCTC
*
85930481 ATCTCCCTGAAGTTGCAGTGGAGTAGACT-AAGCTACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTT
* ** * * * *
85930524 ATCTCCTTGAAGTCACAGTGGAGCAGATTGAAGATAGCGAATCTC
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTA-CAAATCTT
*
85930569 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTT
* *
85930613 ATCTCCCTAAAGTTGTAGTGGAGTAGATTGAAGCTACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTT
* ** * *
85930657 ATCTCCCTGAATTTGGGGTAGAGTAGATTGAA-ATGACAAAT-TCT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCT-ACAAATCT-T
* * * * * *
85930701 ATAC-CTCTGAAGTTGCAGTGG-GTCGAATTACATCAATCATAGCAAGTCTC
1 AT-CTCCCTGAAGTTGCAGTGGAGTAG-A-T---TGAAGC-TA-CAAATCTT
* * * ** * *
85930751 GTGTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTACGAATCTC
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTT
* * * *
85930795 ATCTCCCTGAAGTTGTAGTAGAGTACATTGAAACTAC
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTAC
85930832 CCCTGAAGTT
Statistics
Matches: 241, Mismatches: 51, Indels: 31
0.75 0.16 0.10
Matches are distributed among these distances:
43 29 0.12
44 137 0.57
45 42 0.17
46 4 0.02
48 3 0.01
49 2 0.01
50 22 0.09
51 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTT
Found at i:85931342 original size:12 final size:12
Alignment explanation
Indices: 85931309--85931344 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
85931299 AAAAAGACAA
*
85931309 CAAAAATAGAAG
1 CAAAAATAGTAG
*
85931321 CGAAAATAGTAG
1 CAAAAATAGTAG
85931333 CAAAAATAGTAG
1 CAAAAATAGTAG
85931345 ATGACAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.58, C:0.08, G:0.19, T:0.14
Consensus pattern (12 bp):
CAAAAATAGTAG
Found at i:85935929 original size:27 final size:27
Alignment explanation
Indices: 85935899--85935984 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
85935889 TCAACAAATG
*
85935899 TTCATGTTCAATCAATATCAACTTATT
1 TTCATGTTCAATCATTATCAACTTATT
* * ** *
85935926 TTCAT-TTTAAGCATTATTCAACAAATG
1 TTCATGTTCAATCATTA-TCAACTTATT
85935953 TTCATGTTCAATCATTATCAACTTATT
1 TTCATGTTCAATCATTATCAACTTATT
85935980 TTCAT
1 TTCAT
85935985 TTTAAGCATT
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
26 8 0.17
27 29 0.63
28 9 0.20
ACGTcount: A:0.33, C:0.17, G:0.05, T:0.45
Consensus pattern (27 bp):
TTCATGTTCAATCATTATCAACTTATT
Found at i:85935972 original size:54 final size:55
Alignment explanation
Indices: 85935885--85935999 Score: 214
Period size: 54 Copynumber: 2.1 Consensus size: 55
85935875 TAATCTCTAC
85935885 TTATTCAACAAATGTTCATGTTCAATCAATATCAACTTATTTTCATTTTAAGCA-
1 TTATTCAACAAATGTTCATGTTCAATCAATATCAACTTATTTTCATTTTAAGCAT
*
85935939 TTATTCAACAAATGTTCATGTTCAATCATTATCAACTTATTTTCATTTTAAGCAT
1 TTATTCAACAAATGTTCATGTTCAATCAATATCAACTTATTTTCATTTTAAGCAT
85935994 TTATTC
1 TTATTC
85936000 CATGGCCATG
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
54 53 0.90
55 6 0.10
ACGTcount: A:0.33, C:0.17, G:0.05, T:0.45
Consensus pattern (55 bp):
TTATTCAACAAATGTTCATGTTCAATCAATATCAACTTATTTTCATTTTAAGCAT
Found at i:85935997 original size:27 final size:26
Alignment explanation
Indices: 85935914--85935994 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 26
85935904 GTTCAATCAA
85935914 TATCAACTTATTTTCATTTTAAGCAT
1 TATCAACTTATTTTCATTTTAAGCAT
** * * *
85935940 TATTCAACAAATGTTCATGTTCAATCAT
1 TA-TCAACTTATTTTCAT-TTTAAGCAT
85935968 TATCAACTTATTTTCATTTTAAGCAT
1 TATCAACTTATTTTCATTTTAAGCAT
85935994 T
1 T
85935995 TATTCCATGG
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
26 10 0.23
27 24 0.56
28 9 0.21
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.47
Consensus pattern (26 bp):
TATCAACTTATTTTCATTTTAAGCAT
Found at i:85936606 original size:15 final size:16
Alignment explanation
Indices: 85936586--85936624 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
85936576 AATAATCGTT
85936586 TCATCAT-ATATATAG
1 TCATCATAATATATAG
*
85936601 TCATCATAAATATATAT
1 TCATCAT-AATATATAG
85936618 TCATCAT
1 TCATCAT
85936625 CATGAAGTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
17 14 0.67
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (16 bp):
TCATCATAATATATAG
Found at i:85939459 original size:83 final size:83
Alignment explanation
Indices: 85939321--85939522 Score: 291
Period size: 83 Copynumber: 2.4 Consensus size: 83
85939311 TTTTTTTCTT
* * *
85939321 TTATATTAAACATGACAAGGTTGGTGCTATATTAATCAATTTTGATTAGCTTTTCAATGGTCC-A
1 TTATATTAAACATGACAAGGTTAGTGTTATATTAATCAATTTTGATTAGATTTTCAATGGTCCAA
*
85939385 ACTTTAACCTCATTTTCCA
66 AC-TCAACCTCATTTTCCA
* *
85939404 TTTTATTAAACATGACAAGGTTATTGTTATATTAATCAATTTTGATTA-ATGTTTCAATGGTCCA
1 TTATATTAAACATGACAAGGTTAGTGTTATATTAATCAATTTTGATTAGAT-TTTCAATGGTCCA
85939468 AACTCAACCTCATTTTCCA
65 AACTCAACCTCATTTTCCA
* * *
85939487 TTATGTCAAACATGACAAGATTAGTGTTATATTAAT
1 TTATATTAAACATGACAAGGTTAGTGTTATATTAAT
85939523 TAACATCAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
82 1 0.01
83 102 0.96
84 3 0.03
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (83 bp):
TTATATTAAACATGACAAGGTTAGTGTTATATTAATCAATTTTGATTAGATTTTCAATGGTCCAA
ACTCAACCTCATTTTCCA
Found at i:85940082 original size:83 final size:83
Alignment explanation
Indices: 85939944--85940145 Score: 291
Period size: 83 Copynumber: 2.4 Consensus size: 83
85939934 TTTTTTTCTT
* * *
85939944 TTATATTAAACATGACAAGGTTGGTGCTATATTAATCAATTTTGATTAGCTTTTCAATGGTCC-A
1 TTATATTAAACATGACAAGGTTAGTGTTATATTAATCAATTTTGATTAGATTTTCAATGGTCCAA
*
85940008 ACTTTAACCTCATTTTCCA
66 AC-TCAACCTCATTTTCCA
* *
85940027 TTTTATTAAACATGACAAGGTTATTGTTATATTAATCAATTTTGATTA-ATGTTTCAATGGTCCA
1 TTATATTAAACATGACAAGGTTAGTGTTATATTAATCAATTTTGATTAGAT-TTTCAATGGTCCA
85940091 AACTCAACCTCATTTTCCA
65 AACTCAACCTCATTTTCCA
* * *
85940110 TTATGTCAAACATGACAAGATTAGTGTTATATTAAT
1 TTATATTAAACATGACAAGGTTAGTGTTATATTAAT
85940146 TAACATCAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
82 1 0.01
83 102 0.96
84 3 0.03
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (83 bp):
TTATATTAAACATGACAAGGTTAGTGTTATATTAATCAATTTTGATTAGATTTTCAATGGTCCAA
ACTCAACCTCATTTTCCA
Found at i:85940450 original size:623 final size:623
Alignment explanation
Indices: 85939264--85940510 Score: 2476
Period size: 623 Copynumber: 2.0 Consensus size: 623
85939254 ATTAATGCAA
85939264 AATGTACCCTTTTTCTAATTAACTTTATTTGAATTTGTAACAAGGTTTTTTTTTCTTTTATATTA
1 AATGTACCCTTTTTCTAATTAACTTTATTTGAATTTGTAACAAGGTTTTTTTTTCTTTTATATTA
85939329 AACATGACAAGGTTGGTGCTATATTAATCAATTTTGATTAGCTTTTCAATGGTCCAACTTTAACC
66 AACATGACAAGGTTGGTGCTATATTAATCAATTTTGATTAGCTTTTCAATGGTCCAACTTTAACC
85939394 TCATTTTCCATTTTATTAAACATGACAAGGTTATTGTTATATTAATCAATTTTGATTAATGTTTC
131 TCATTTTCCATTTTATTAAACATGACAAGGTTATTGTTATATTAATCAATTTTGATTAATGTTTC
85939459 AATGGTCCAAACTCAACCTCATTTTCCATTATGTCAAACATGACAAGATTAGTGTTATATTAATT
196 AATGGTCCAAACTCAACCTCATTTTCCATTATGTCAAACATGACAAGATTAGTGTTATATTAATT
*
85939524 AACATCAATAAAATAAAACAAAAATGTTTAAAATGCATTCAAACTTCAGGCACATCAATTTATGT
261 AACATCAATAAAATAAAACAAAAAAGTTTAAAATGCATTCAAACTTCAGGCACATCAATTTATGT
85939589 TTTGCCTTGATTGCAACAATTATCCAGAATAGAAGTTTCGATATGGGCACTTGTTTCAACTGTGG
326 TTTGCCTTGATTGCAACAATTATCCAGAATAGAAGTTTCGATATGGGCACTTGTTTCAACTGTGG
85939654 CCAATTGCTCTACATAGACTGCAACATTTGAGTTCGCTCTTTTCCCTCAAGGTGGGGAACTCATT
391 CCAATTGCTCTACATAGACTGCAACATTTGAGTTCGCTCTTTTCCCTCAAGGTGGGGAACTCATT
85939719 TTCCCAAATACGTAACGTGCGTTCTAGCATGTACACCTCATCAACATATTGCCTACAATCGACCT
456 TTCCCAAATACGTAACGTGCGTTCTAGCATGTACACCTCATCAACATATTGCCTACAATCGACCT
85939784 TAGCCCATGCACATGCTACAAAGACGTGTGAACACGAGTACCAAATCAATTGAAACATCTCTTAG
521 TAGCCCATGCACATGCTACAAAGACGTGTGAACACGAGTACCAAATCAATTGAAACATCTCTTAG
85939849 TTGCACCTCTTGTTTCAGAGATTAGCTCCGTATGACCT
586 TTGCACCTCTTGTTTCAGAGATTAGCTCCGTATGACCT
85939887 AATGTACCCTTTTTCTAATTAACTTTATTTGAATTTGTAACAAGGTTTTTTTTTCTTTTATATTA
1 AATGTACCCTTTTTCTAATTAACTTTATTTGAATTTGTAACAAGGTTTTTTTTTCTTTTATATTA
85939952 AACATGACAAGGTTGGTGCTATATTAATCAATTTTGATTAGCTTTTCAATGGTCCAACTTTAACC
66 AACATGACAAGGTTGGTGCTATATTAATCAATTTTGATTAGCTTTTCAATGGTCCAACTTTAACC
85940017 TCATTTTCCATTTTATTAAACATGACAAGGTTATTGTTATATTAATCAATTTTGATTAATGTTTC
131 TCATTTTCCATTTTATTAAACATGACAAGGTTATTGTTATATTAATCAATTTTGATTAATGTTTC
85940082 AATGGTCCAAACTCAACCTCATTTTCCATTATGTCAAACATGACAAGATTAGTGTTATATTAATT
196 AATGGTCCAAACTCAACCTCATTTTCCATTATGTCAAACATGACAAGATTAGTGTTATATTAATT
85940147 AACATCAATAAAATAAAACAAAAAAGTTTAAAATGCATTCAAACTTCAGGCACATCAATTTATGT
261 AACATCAATAAAATAAAACAAAAAAGTTTAAAATGCATTCAAACTTCAGGCACATCAATTTATGT
85940212 TTTGCCTTGATTGCAACAATTATCCAGAATAGAAGTTTCGATATGGGCACTTGTTTCAACTGTGG
326 TTTGCCTTGATTGCAACAATTATCCAGAATAGAAGTTTCGATATGGGCACTTGTTTCAACTGTGG
85940277 CCAATTGCTCTACATAGACTGCAACATTTGAGTTCGCTCTTTTCCCTCAAGGTGGGGAACTCATT
391 CCAATTGCTCTACATAGACTGCAACATTTGAGTTCGCTCTTTTCCCTCAAGGTGGGGAACTCATT
85940342 TTCCCAAATACGTAACGTGCGTTCTAGCATGTACACCTCATCAACATATTGCCTACAATCGACCT
456 TTCCCAAATACGTAACGTGCGTTCTAGCATGTACACCTCATCAACATATTGCCTACAATCGACCT
*
85940407 TAGCCCATGCACATGCTACAAAGACGTGTGAACACGGGTACCAAATCAATTGAAACATCTCTTAG
521 TAGCCCATGCACATGCTACAAAGACGTGTGAACACGAGTACCAAATCAATTGAAACATCTCTTAG
85940472 TTGCACCTCTTGTTTCAGAGATTAGCTCCGTATGACCT
586 TTGCACCTCTTGTTTCAGAGATTAGCTCCGTATGACCT
85940510 A
1 A
85940511 GCTCGCATAC
Statistics
Matches: 622, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
623 622 1.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (623 bp):
AATGTACCCTTTTTCTAATTAACTTTATTTGAATTTGTAACAAGGTTTTTTTTTCTTTTATATTA
AACATGACAAGGTTGGTGCTATATTAATCAATTTTGATTAGCTTTTCAATGGTCCAACTTTAACC
TCATTTTCCATTTTATTAAACATGACAAGGTTATTGTTATATTAATCAATTTTGATTAATGTTTC
AATGGTCCAAACTCAACCTCATTTTCCATTATGTCAAACATGACAAGATTAGTGTTATATTAATT
AACATCAATAAAATAAAACAAAAAAGTTTAAAATGCATTCAAACTTCAGGCACATCAATTTATGT
TTTGCCTTGATTGCAACAATTATCCAGAATAGAAGTTTCGATATGGGCACTTGTTTCAACTGTGG
CCAATTGCTCTACATAGACTGCAACATTTGAGTTCGCTCTTTTCCCTCAAGGTGGGGAACTCATT
TTCCCAAATACGTAACGTGCGTTCTAGCATGTACACCTCATCAACATATTGCCTACAATCGACCT
TAGCCCATGCACATGCTACAAAGACGTGTGAACACGAGTACCAAATCAATTGAAACATCTCTTAG
TTGCACCTCTTGTTTCAGAGATTAGCTCCGTATGACCT
Found at i:85945019 original size:17 final size:17
Alignment explanation
Indices: 85944986--85945019 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
85944976 AAAAAGACAT
*
85944986 AAAAATATAAAATATTA
1 AAAAATATAAAACATTA
*
85945003 AAAAATATATAACATTA
1 AAAAATATAAAACATTA
85945020 CATAAATGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATATAAAACATTA
Found at i:85945117 original size:18 final size:17
Alignment explanation
Indices: 85945084--85945118 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
85945074 TAAATAAGAT
*
85945084 ATTAAAAAATATAAAAC
1 ATTAAAAAAAATAAAAC
85945101 ATTAAAAAAAATCAAAAC
1 ATTAAAAAAAAT-AAAAC
85945119 CCAAAATCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.20
Consensus pattern (17 bp):
ATTAAAAAAAATAAAAC
Found at i:85948529 original size:58 final size:59
Alignment explanation
Indices: 85948460--85948576 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 59
85948450 ACTTATTCTT
85948460 TGGTTAAAATAATATGAAAATTATAGCTTAAAGTA-TTTTTTTATAAGAATACATACTA
1 TGGTTAAAATAATATGAAAATTATAGCTTAAAGTATTTTTTTTATAAGAATACATACTA
85948518 TGGTTAAAATAATATGAAAATTATAGCTTAAAGTATTTTTTTTATAAGAATACATACTA
1 TGGTTAAAATAATATGAAAATTATAGCTTAAAGTATTTTTTTTATAAGAATACATACTA
85948577 GATTACATAA
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 35 0.60
59 23 0.40
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.40
Consensus pattern (59 bp):
TGGTTAAAATAATATGAAAATTATAGCTTAAAGTATTTTTTTTATAAGAATACATACTA
Found at i:85955478 original size:28 final size:29
Alignment explanation
Indices: 85955437--85955492 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
85955427 TCGGGTTTTT
*
85955437 GGACACGGGCGTGT-CTAGGCCGTGTGAG
1 GGACACGGGCGTGTGCTAGGCCATGTGAG
* *
85955465 GGACACGGGTGTGTGCTTGGCCATGTGA
1 GGACACGGGCGTGTGCTAGGCCATGTGA
85955493 AAACCCCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.14, C:0.20, G:0.45, T:0.21
Consensus pattern (29 bp):
GGACACGGGCGTGTGCTAGGCCATGTGAG
Found at i:85958807 original size:16 final size:16
Alignment explanation
Indices: 85958786--85958818 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
85958776 TGTCATGTGA
85958786 TAAGTAATTGTTGAAG
1 TAAGTAATTGTTGAAG
*
85958802 TAAGTACTTGTTGAAG
1 TAAGTAATTGTTGAAG
85958818 T
1 T
85958819 GGTTGAGGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.39
Consensus pattern (16 bp):
TAAGTAATTGTTGAAG
Found at i:85960312 original size:9 final size:9
Alignment explanation
Indices: 85960298--85960330 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
85960288 AATTGAGTTG
85960298 ACTCGAATA
1 ACTCGAATA
*
85960307 ACTCGATTA
1 ACTCGAATA
85960316 ACTCGAATA
1 ACTCGAATA
85960325 ACTCGA
1 ACTCGA
85960331 TTCATTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:85960321 original size:18 final size:18
Alignment explanation
Indices: 85960298--85960332 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
85960288 AATTGAGTTG
85960298 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
85960316 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
85960333 CATTTAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:85960430 original size:13 final size:13
Alignment explanation
Indices: 85960412--85960444 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
85960402 GGGACATGCC
*
85960412 CGTGTGGGCAGGG
1 CGTGTGGGCAAGG
85960425 CGTGTGGGCAAGG
1 CGTGTGGGCAAGG
85960438 CGTGTGG
1 CGTGTGG
85960445 TCACACACGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.09, C:0.15, G:0.58, T:0.18
Consensus pattern (13 bp):
CGTGTGGGCAAGG
Found at i:85966781 original size:94 final size:94
Alignment explanation
Indices: 85966583--85966800 Score: 266
Period size: 94 Copynumber: 2.3 Consensus size: 94
85966573 TCACTTGTGT
*
85966583 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATG
*
85966648 TCTGGGACATAGCATCGACATTAAGACGA
66 TCTGGGACATAACATCGACATTAAGACGA
* * * *
85966677 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGTG-TC-AGTGTAAGACCAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCTAGTGTAAGACCAT
* * *
85966739 GTCTGGGACATAACATTGACA-TAGATATGCTA
65 GTCTGGGACATAACATCGACATTA-AGA--CGA
85966771 GAGCCT-GTGTAAGACCATGTCTGGGACATG
1 GAG-CTAGTGTAAGA-CATGTCTGGGACATG
85966801 GCACCGACAC
Statistics
Matches: 108, Mismatches: 10, Indels: 11
0.84 0.08 0.09
Matches are distributed among these distances:
91 2 0.02
92 34 0.31
93 1 0.01
94 53 0.49
95 18 0.17
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATG
TCTGGGACATAACATCGACATTAAGACGA
Found at i:85968187 original size:27 final size:27
Alignment explanation
Indices: 85968145--85968303 Score: 191
Period size: 27 Copynumber: 5.9 Consensus size: 27
85968135 GCGAGGCTGC
* *
85968145 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
85968172 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
85968198 CAGATATATGTGGCAGAGCCACTAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
85968225 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
85968252 CAGATATATGTGGCAGTGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
85968279 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
85968304 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
26 10 0.09
27 100 0.88
28 4 0.04
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:85968304 original size:54 final size:54
Alignment explanation
Indices: 85968145--85968306 Score: 247
Period size: 54 Copynumber: 3.0 Consensus size: 54
85968135 GCGAGGCTGC
* * * *
85968145 CAGATAT-TGTGACAGAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
*
85968198 CAGATATATGTGGCAGAGCCACTAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
*
85968252 CAGATATATGTGGCAGTGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
85968306 C
1 C
85968307 GCTTCCTCCA
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 12 0.12
54 88 0.88
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:85968701 original size:8 final size:8
Alignment explanation
Indices: 85968684--85968714 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
85968674 TCTCAAAATA
85968684 TCGGCTTT
1 TCGGCTTT
*
85968692 TCGGCATT
1 TCGGCTTT
85968700 TCGGCTTT
1 TCGGCTTT
85968708 TCGGCTT
1 TCGGCTT
85968715 GTGCTGATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.03, C:0.26, G:0.26, T:0.45
Consensus pattern (8 bp):
TCGGCTTT
Found at i:85969928 original size:26 final size:26
Alignment explanation
Indices: 85969892--85970000 Score: 191
Period size: 26 Copynumber: 4.2 Consensus size: 26
85969882 ATGAAATGCC
*
85969892 TATCATGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAACCCAT
85969918 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
85969944 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
85969970 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
85969996 TATCA
1 TATCA
85970001 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:85978929 original size:30 final size:30
Alignment explanation
Indices: 85978895--85978954 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
85978885 TAATTTGTAA
*
85978895 TATCCCGAATTAGGGCCTAATCGGAATAGT
1 TATCCCGAATTAGGGCCTAATCAGAATAGT
85978925 TATCCCGAATTAGGGCCTAATCAGAATAGT
1 TATCCCGAATTAGGGCCTAATCAGAATAGT
85978955 GGTTTTGTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (30 bp):
TATCCCGAATTAGGGCCTAATCAGAATAGT
Found at i:85982951 original size:40 final size:40
Alignment explanation
Indices: 85982896--85983148 Score: 326
Period size: 40 Copynumber: 6.3 Consensus size: 40
85982886 GTGTTACAAT
* *
85982896 TTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 TTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
* *
85982936 TTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
1 TTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
*
85982976 TTCATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCA
1 TTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
* * *
85983016 TTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
1 TTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
* * ** *
85983056 TTCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCA
1 TTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
* * * * *
85983096 TTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGTA
1 TTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
* *
85983136 ATCATGCTGGTGA
1 TTCATGCTAGTGA
85983149 CGTGTATTCG
Statistics
Matches: 187, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 187 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
Found at i:85992360 original size:46 final size:44
Alignment explanation
Indices: 85992272--85992361 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
85992262 ATTATAACAT
* *
85992272 CATTTCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTC
***
85992316 CATTCCATTCAACCAAACAGTTGAATTACTTATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACAAGAA-TAC-TATTACAGCTCTATTC
85992362 AATTACAGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 21 0.54
45 3 0.08
46 15 0.38
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.33
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTC
Found at i:85992368 original size:16 final size:16
Alignment explanation
Indices: 85992347--85992386 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
85992337 TGAATTACTT
85992347 ATTACAG-CTCTATTCA
1 ATTACAGTCT-TATTCA
*
85992363 ATTACAGTCTTATTCC
1 ATTACAGTCTTATTCA
85992379 ATTACAGT
1 ATTACAGT
85992387 GAATCAAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.91
17 2 0.09
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (16 bp):
ATTACAGTCTTATTCA
Found at i:85993791 original size:24 final size:24
Alignment explanation
Indices: 85993764--85993820 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
85993754 AGATAACTAT
* *
85993764 ATAAAATATTAAAT-TTAAATTTAA
1 ATAAAATA-AAAATATTAAATTAAA
*
85993788 ATAATATAAAAATATTAAATTAAA
1 ATAAAATAAAAATATTAAATTAAA
*
85993812 ATAATATAA
1 ATAAAATAA
85993821 TTTTTTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 4 0.14
24 25 0.86
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
ATAAAATAAAAATATTAAATTAAA
Found at i:85993802 original size:30 final size:33
Alignment explanation
Indices: 85993751--85993813 Score: 96
Period size: 30 Copynumber: 2.0 Consensus size: 33
85993741 TAAAATAATG
*
85993751 TTAAGATAACTATATAAAATATTAAATTTAAAT
1 TTAAGATAACTATATAAAATATTAAATTAAAAT
85993784 TTAA-ATAA-TATA-AAAATATTAAATTAAAAT
1 TTAAGATAACTATATAAAATATTAAATTAAAAT
85993814 AATATAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 17 0.59
31 4 0.14
32 4 0.14
33 4 0.14
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (33 bp):
TTAAGATAACTATATAAAATATTAAATTAAAAT
Found at i:85993820 original size:29 final size:31
Alignment explanation
Indices: 85993756--85993821 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
85993746 TAATGTTAAG
*
85993756 ATAACTATATAAAATATTAAATTTAAATTTAA
1 ATAA-TATATAAAATATTAAATTTAAATATAA
85993788 ATAATATA-AAAATATTAAA-TTAAA-ATAA
1 ATAATATATAAAATATTAAATTTAAATATAA
85993816 TATAAT
1 -ATAAT
85993822 TTTTTTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 3 0.09
29 10 0.31
30 11 0.34
31 4 0.12
32 4 0.12
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (31 bp):
ATAATATATAAAATATTAAATTTAAATATAA
Found at i:85998383 original size:48 final size:47
Alignment explanation
Indices: 85998235--85998388 Score: 112
Period size: 48 Copynumber: 3.1 Consensus size: 47
85998225 TATTTTGTTA
*
85998235 GTAATTTATGATTAGGTTATAAATTGTCTGTGTTTAGCTTAGTGTTTT
1 GTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAG-TTAGTGTTTT
* * * * * ** * * * * *
85998283 GTGATTTTTTATTAATGTAAT-TTTTTTAATTATTTTATAGTTATTTTGTTT
1 GTAATTTATGATT-AGGTTATAAATTGT--TTGTGTT-TAGTTAGTGT-TTT
85998334 GTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTTAGTGTTTT
1 GTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAG-TTAGTGTTTT
*
85998382 GTGATTT
1 GTAATTT
85998389 TTTATGAATC
Statistics
Matches: 73, Mismatches: 26, Indels: 14
0.65 0.23 0.12
Matches are distributed among these distances:
48 25 0.34
49 15 0.21
50 14 0.19
51 19 0.26
ACGTcount: A:0.23, C:0.01, G:0.18, T:0.58
Consensus pattern (47 bp):
GTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTAGTGTTTT
Found at i:85998541 original size:103 final size:101
Alignment explanation
Indices: 85998202--85998792 Score: 726
Period size: 103 Copynumber: 5.7 Consensus size: 101
85998192 AAATTTTTTT
* * *
85998202 ATTTTTTAAAATTATTATATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTCTGTG
1 ATTTTTT-AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
* * *
85998267 TTTAGCTTAG-TGTTTTGTGATTTTTTATTAATGT-A
65 TTTAGTTTAGTTTTTTTGTGATTTTTTATGAATGTAA
* * *
85998302 ATTTTTTTAATTATTTTATAGTTATTTTGTTTGTAATTTATGATTAGGTTATAAATTGTTTGTGT
1 ATTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGT
* *
85998367 TTAGTTTAG-TGTTTTGTGATTTTTTATGAATCTAA
66 TTAGTTTAGTTTTTTTGTGATTTTTTATGAATGTAA
* * * *
85998402 TTTTTTTTATTTTTTTAATTATTTTAAAGTCATTTTGTTAGTAATTTATGGTTAGATTATAAATT
1 --------ATTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT
85998467 GTTTGTGTTTAGTTTAGTATTTTTTGTGATTTTTTTATGAATGTAA
58 GTTTGTGTTTAGTTTAGT-TTTTTTGTGA-TTTTTTATGAATGTAA
* ** *
85998513 ATTTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATGGCTAGGTTATAAATTTTTTGTGT
1 ATTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGT
*
85998578 TTAGTTTAGTGTTTATTGTGATTTTTTATGAATGT-A
66 TTAGTTTAGT-TTTTTTGTGATTTTTTATGAATGTAA
*
85998614 ATTTTTTAAAATTATTTTAAAGTTATTTTTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGT
1 ATTTTTT-AAATTATTTTAAAGTTA-TTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGT
* * * *
85998679 ATTTAGTTTACTTTTTATTGTGACTTTTTATAAATGTAA
64 GTTTAGTTTAGTTTTT-TTGTGATTTTTTATGAATGTAA
* *
85998718 ATTTTTAAAAAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT-ATT
1 ATTTTT----TAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTT
85998782 -TGTTTAGTTTA
62 GTGTTTAGTTTA
85998793 ACGTGTAATG
Statistics
Matches: 439, Mismatches: 32, Indels: 36
0.87 0.06 0.07
Matches are distributed among these distances:
99 84 0.19
100 8 0.02
101 8 0.02
102 33 0.08
103 145 0.33
104 17 0.04
105 2 0.00
106 32 0.07
107 17 0.04
108 69 0.16
110 9 0.02
111 15 0.03
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.58
Consensus pattern (101 bp):
ATTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGT
TTAGTTTAGTTTTTTTGTGATTTTTTATGAATGTAA
Found at i:85998807 original size:310 final size:306
Alignment explanation
Indices: 85998202--85998824 Score: 788
Period size: 310 Copynumber: 2.0 Consensus size: 306
85998192 AAATTTTTTT
* *
85998202 ATTTTTTAAAATTATTATATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTCTGTG
1 ATTTTTTAAAATTATTATAAAGTTATTTTGTTAGTAATTTATGACTAGGTTATAAATTGTCTGTG
* * *
85998267 TTTAGCTTAGTGTTTTGTGATTTTTTATTAATGTAATTTTTTTAATTATTTTATAGTTATTTTGT
66 TTTAGCTTAGTGTTTTGTGATTTTTTATGAATGTAATTTTTTAAATTATTTTAAAGTTATTTTGT
* * * *
85998332 TTGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTTAGTGTTTTGTGATTTTTTATGAA
131 TAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTTAGTGTTTTGTGACTTTTTATAAA
* ***** *
85998397 TCTAATTTTTTTTATTTTTTTAATTATTTTAAAGTCATTTTGTTAGTAATTTATGGTTAGATTAT
196 TCTAA-TATTTTTA-TAAAAAAATTATTTTAAAGTCATTTTGTTAGTAATTTATGATTAGATTAT
* ** * ** *
85998462 AAATTGTTTGTGTTTAGTTTAGTATTTTTTGTGATTTTTTTATGAATGTAA
259 AAATTGATTGTGTTTAGTTTAACATGTAATGTGA-TTTGTTAT-AATGT-A
* * * * *
85998513 ATTTTTT-TAATTATTTTAAAGTTATTTTGTTAGTAATTTATGGCTAGGTTATAAATTTTTTGTG
1 ATTTTTTAAAATTATTATAAAGTTATTTTGTTAGTAATTTATGACTAGGTTATAAATTGTCTGTG
*
85998577 TTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTTAAAATTATTTTAAAGTTATTT
66 TTTAGCTTAGTG-TT-TTGTGATTTTTTATGAATGTAATTTTTT-AAATTATTTTAAAGTTA-TT
* * *
85998642 TTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGTATTTAGTTTACTTTTTATTGTGACTTTT
127 TTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTTA-GTGTT-TTGTGACTTTT
* * *
85998707 TATAAATGTAA-ATTTTTA-AAAAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
190 TATAAATCTAATATTTTTATAAAAAAATTATTTTAAAGTCATTTTGTTAGTAATTTATGATTAGA
*
85998770 TTATAAATT-ATT-TGTTTAGTTTAACGTGTAATGTGATTTGTTATAATGTA
255 TTATAAATTGATTGTGTTTAGTTTAACATGTAATGTGATTTGTTATAATGTA
85998820 ATTTT
1 ATTTT
85998825 ATTTGTTTTT
Statistics
Matches: 270, Mismatches: 36, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
307 6 0.02
308 5 0.02
309 7 0.03
310 79 0.29
311 11 0.04
312 73 0.27
313 15 0.06
314 52 0.19
315 3 0.01
316 19 0.07
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.57
Consensus pattern (306 bp):
ATTTTTTAAAATTATTATAAAGTTATTTTGTTAGTAATTTATGACTAGGTTATAAATTGTCTGTG
TTTAGCTTAGTGTTTTGTGATTTTTTATGAATGTAATTTTTTAAATTATTTTAAAGTTATTTTGT
TAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTTAGTGTTTTGTGACTTTTTATAAA
TCTAATATTTTTATAAAAAAATTATTTTAAAGTCATTTTGTTAGTAATTTATGATTAGATTATAA
ATTGATTGTGTTTAGTTTAACATGTAATGTGATTTGTTATAATGTA
Found at i:85998820 original size:206 final size:204
Alignment explanation
Indices: 85998202--85998824 Score: 676
Period size: 207 Copynumber: 3.0 Consensus size: 204
85998192 AAATTTTTTT
* * * * * * *
85998202 ATTTTTTAAAATTATTATATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTCTGTG
1 ATTTTTT-AAATTATTTTAAAGTCATTTTGTTAGTAATTTATGGTTAGATTATAAATTGTTTGTA
* * * * ** *
85998267 TTTAGCTTA--GTGTTTTGTGAT-TTTTTATTAATGT-AATTTTTTTAATTATTTTATAGTTATT
65 TTTAGTTTACTATTTTTTGTGATCTTTTTATAAATGTAAATTTTTAAAATTATTTTAAAGTTATT
* * ** *
85998328 TTGTTTGTAATTTATGATTAGGTTATAAATTGT-TTGTGTTTAGTTT-A-GTGTTTTGTGATTTT
130 TTGTTAGTAATTTATGACTAGGTTATAAATT-TATTGTGTTTAGTTTAACGTGTAATGTGATTTG
*
85998390 TTATGAATCTA
194 TTATGAATGTA
85998401 ATTTTTTTTATTTTTTTAATTATTTTAAAGTCATTTTGTTAGTAATTTATGGTTAGATTATAAAT
1 A--TTTTTTA-------AATTATTTTAAAGTCATTTTGTTAGTAATTTATGGTTAGATTATAAAT
* * * * **
85998466 TGTTTGTGTTTAGTTTAGTATTTTTTGTGATTTTTTTATGAATGTAAATTTTTTTAATTATTTTA
57 TGTTTGTATTTAGTTTACTATTTTTTGTGATCTTTTTATAAATGTAAATTTTTAAAATTATTTTA
* * ** * *
85998531 AAGTTATTTTGTTAGTAATTTATGGCTAGGTTATAAATTTTTTGTGTTTAGTTTAGTGTTTATTG
122 AAGTTATTTTGTTAGTAATTTATGACTAGGTTATAAATTTATTGTGTTTAGTTTAACGTGTAATG
*
85998596 TGATTTTTTATGAATGTA
187 TGATTTGTTATGAATGTA
* *
85998614 ATTTTTTAAAATTATTTTAAAGTTATTTTTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGT
1 ATTTTTT-AAATTATTTTAAAGTCA-TTTTGTTAGTAATTTATGGTTAGATTATAAATTGTTTGT
85998679 ATTTAGTTTACT-TTTTATTGTGA-CTTTTTATAAATGTAAATTTTTAAAAAAAATTATTTTAAA
64 ATTTAGTTTACTATTTT-TTGTGATCTTTTTATAAATGTAAATTTTT----AAAATTATTTTAAA
*
85998742 GTTATTTTGTTAGTAATTTATGATTAGGTTATAAA-TTATT-TGTTTAGTTTAACGTGTAATGTG
124 GTTATTTTGTTAGTAATTTATGACTAGGTTATAAATTTATTGTGTTTAGTTTAACGTGTAATGTG
85998805 ATTTGTTAT-AATGTA
189 ATTTGTTATGAATGTA
85998820 ATTTT
1 ATTTT
85998825 ATTTGTTTTT
Statistics
Matches: 367, Mismatches: 34, Indels: 39
0.83 0.08 0.09
Matches are distributed among these distances:
199 1 0.00
200 1 0.00
201 6 0.02
205 39 0.11
206 65 0.18
207 85 0.23
208 4 0.01
209 55 0.15
210 13 0.04
211 73 0.20
212 1 0.00
213 24 0.07
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.57
Consensus pattern (204 bp):
ATTTTTTAAATTATTTTAAAGTCATTTTGTTAGTAATTTATGGTTAGATTATAAATTGTTTGTAT
TTAGTTTACTATTTTTTGTGATCTTTTTATAAATGTAAATTTTTAAAATTATTTTAAAGTTATTT
TGTTAGTAATTTATGACTAGGTTATAAATTTATTGTGTTTAGTTTAACGTGTAATGTGATTTGTT
ATGAATGTA
Found at i:85999185 original size:13 final size:13
Alignment explanation
Indices: 85999167--85999192 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85999157 GGACCCTCTA
85999167 GAAATTAATTATC
1 GAAATTAATTATC
85999180 GAAATTAATTATC
1 GAAATTAATTATC
85999193 TCAGATTAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
GAAATTAATTATC
Found at i:86001323 original size:41 final size:41
Alignment explanation
Indices: 86001287--86001448 Score: 168
Period size: 40 Copynumber: 4.0 Consensus size: 41
86001277 CAAAAAATAT
* * * *
86001287 CGCTATAGATCTAGCATTAGCGGCACTTTTTG-AAAAATGC
1 CGCTATAGATCGAGCATTAGCGGCGCTTTCTGAAAAAACGC
* * *
86001327 CACTATAGATCGAGCATTAGCAGTGCTTTCTG-AAAAACGC
1 CGCTATAGATCGAGCATTAGCGGCGCTTTCTGAAAAAACGC
* * ** ** *
86001367 CGCTATAGATCGAGCAGTAGTGATGCTTTCCAAAAAAACGT
1 CGCTATAGATCGAGCATTAGCGGCGCTTTCTGAAAAAACGC
*
86001408 CGCTATAGATCGAGCATTAGCGGCGCTTTTTG-AAAAACGC
1 CGCTATAGATCGAGCATTAGCGGCGCTTTCTGAAAAAACGC
86001448 C
1 C
86001449 ACAAAAAAAT
Statistics
Matches: 98, Mismatches: 23, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
40 66 0.67
41 32 0.33
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (41 bp):
CGCTATAGATCGAGCATTAGCGGCGCTTTCTGAAAAAACGC
Done.