Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 254 of 362
Found at i:86006671 original size:6 final size:6
Alignment explanation
Indices: 86006660--86006695 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
86006650 TATTTTACTA
*
86006660 TTATTT TTATTT TTACTT TTATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
86006696 AAATTTTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:86006675 original size:18 final size:18
Alignment explanation
Indices: 86006648--86006692 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
86006638 TTTGAGTCCC
86006648 TTTA-TTTTACTATTATT
1 TTTATTTTTACTATTATT
*
86006665 TTTATTTTTACTTTTATT
1 TTTATTTTTACTATTATT
86006683 TTTATTTTTA
1 TTTATTTTTA
86006693 TTTAAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 4 0.15
18 22 0.85
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTATTTTTACTATTATT
Found at i:86006701 original size:18 final size:18
Alignment explanation
Indices: 86006648--86006704 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
86006638 TTTGAGTCCC
86006648 TTTA-TTTTACTATT-ATT
1 TTTATTTTTACT-TTAATT
*
86006665 TTTATTTTTACTTTTATT
1 TTTATTTTTACTTTAATT
*
86006683 TTTATTTTTA-TTTAAAT
1 TTTATTTTTACTTTAATT
86006700 TTTAT
1 TTTAT
86006705 CGTGTCTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
17 16 0.44
18 20 0.56
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTTTTACTTTAATT
Found at i:86009682 original size:40 final size:40
Alignment explanation
Indices: 86009622--86009729 Score: 164
Period size: 40 Copynumber: 2.7 Consensus size: 40
86009612 GCTTTAGTGT
86009622 CATTAGC-AGCGCTTTTTGAAAAACGCCGCTATAGATCGAG
1 CATTAGCGA-CGCTTTTTGAAAAACGCCGCTATAGATCGAG
*
86009662 CATTAGCGACGCTTTCTGAAAAACGCCGCTATAGATCGAG
1 CATTAGCGACGCTTTTTGAAAAACGCCGCTATAGATCGAG
* * *
86009702 CAATAGAGGCGCTTTTTGAAAAACGCCG
1 CATTAGCGACGCTTTTTGAAAAACGCCG
86009730 AAAAAATTCA
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
40 61 0.98
41 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (40 bp):
CATTAGCGACGCTTTTTGAAAAACGCCGCTATAGATCGAG
Found at i:86010161 original size:7 final size:7
Alignment explanation
Indices: 86010149--86010288 Score: 65
Period size: 7 Copynumber: 19.4 Consensus size: 7
86010139 TATCATTATA
86010149 GTTTAGG
1 GTTTAGG
86010156 GTTTAGG
1 GTTTAGG
86010163 GTTTAGG
1 GTTTAGG
86010170 GTTACTA--
1 GTT--TAGG
* *
86010177 TTTTAAG
1 GTTTAGG
**
86010184 GTTTATA
1 GTTTAGG
*
86010191 GATTATGG
1 GTTTA-GG
86010199 GTTTAGG
1 GTTTAGG
* *
86010206 GATTATG
1 GTTTAGG
86010213 GTTTAGG
1 GTTTAGG
*
86010220 GTTTATG
1 GTTTAGG
*
86010227 GTTTAAGA
1 GTTT-AGG
86010235 G-TTAGG
1 GTTTAGG
86010241 GTTTA-G
1 GTTTAGG
86010247 GTGTTAGG
1 GT-TTAGG
*
86010255 GGTTAGTG
1 GTTTAG-G
86010263 G-TTAGGG
1 GTTTA-GG
*
86010270 GTTATGGG
1 GTT-TAGG
86010278 GTTTAAGG
1 GTTT-AGG
86010286 GTT
1 GTT
86010289 AATGGGACAG
Statistics
Matches: 100, Mismatches: 19, Indels: 27
0.68 0.13 0.18
Matches are distributed among these distances:
5 2 0.02
6 6 0.06
7 67 0.67
8 22 0.22
9 3 0.03
ACGTcount: A:0.19, C:0.01, G:0.37, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:86010667 original size:16 final size:16
Alignment explanation
Indices: 86010648--86010678 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
86010638 ATATTAAATA
86010648 ATTTCAAATTTTAAAG
1 ATTTCAAATTTTAAAG
86010664 ATTTCAAATTTTAAA
1 ATTTCAAATTTTAAA
86010679 TAATTTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (16 bp):
ATTTCAAATTTTAAAG
Found at i:86010701 original size:16 final size:15
Alignment explanation
Indices: 86010648--86010702 Score: 57
Period size: 16 Copynumber: 3.9 Consensus size: 15
86010638 ATATTAAATA
86010648 ATTTCAAATTTTAAAG
1 ATTTCAAATTTT-AAG
86010664 ATTTCAAATTTTAA-
1 ATTTCAAATTTTAAG
86010678 A--T--AATTTTCAAG
1 ATTTCAAATTTT-AAG
86010690 ATTTCAAATTTTA
1 ATTTCAAATTTTA
86010703 TCTAATTCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
10 6 0.18
11 2 0.06
12 2 0.06
14 2 0.06
15 3 0.09
16 18 0.55
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (15 bp):
ATTTCAAATTTTAAG
Found at i:86010843 original size:16 final size:17
Alignment explanation
Indices: 86010813--86010847 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
86010803 TATATAACTG
86010813 ATTGTTTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
*
86010830 ATTG-TTTTTGATTTAT
1 ATTGTTTTTTAATTTAT
86010846 AT
1 AT
86010848 ATTAAATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.69
Consensus pattern (17 bp):
ATTGTTTTTTAATTTAT
Found at i:86010850 original size:18 final size:17
Alignment explanation
Indices: 86010813--86010847 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
86010803 TATATAACTG
*
86010813 ATTGTTTTTTAATTTAT
1 ATTGTTTTTGAATTTAT
86010830 ATTGTTTTTG-ATTTAT
1 ATTGTTTTTGAATTTAT
86010846 AT
1 AT
86010848 ATTAAATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.69
Consensus pattern (17 bp):
ATTGTTTTTGAATTTAT
Found at i:86011366 original size:51 final size:52
Alignment explanation
Indices: 86011276--86011375 Score: 139
Period size: 51 Copynumber: 1.9 Consensus size: 52
86011266 CCTTTTCCCT
* * *
86011276 AATCTGAAATCCCTAAAGTATTATCACTCTTTTTTCCCCAATTCGAAATTCAA
1 AATCTAAAATCCCTAAAGTA-TATCACCCTTTTTCCCCCAATTCGAAATTCAA
* *
86011329 AATCTAAAATCCCTAATGTA-ATCACCCTTTTTCCCCCAATTTGAAAT
1 AATCTAAAATCCCTAAAGTATATCACCCTTTTTCCCCCAATTCGAAAT
86011376 CCCTAAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 24 0.57
53 18 0.43
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (52 bp):
AATCTAAAATCCCTAAAGTATATCACCCTTTTTCCCCCAATTCGAAATTCAA
Found at i:86012516 original size:17 final size:16
Alignment explanation
Indices: 86012485--86012518 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
86012475 TTAGTTAATC
*
86012485 TTTTATTTTCTTTTTT
1 TTTTATTTTCATTTTT
86012501 TTTTATTTTTCATTTTT
1 TTTTA-TTTTCATTTTT
86012518 T
1 T
86012519 AAATTACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTATTTTCATTTTT
Found at i:86013169 original size:24 final size:24
Alignment explanation
Indices: 86013142--86013188 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
86013132 ATTATTATTG
* *
86013142 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCATCCGTTTTATCAC
86013166 AAATATTATCATCCGTTTTATCA
1 AAATATTATCATCCGTTTTATCA
86013189 TTTAAGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.43
Consensus pattern (24 bp):
AAATATTATCATCCGTTTTATCAC
Found at i:86013439 original size:14 final size:14
Alignment explanation
Indices: 86013420--86013450 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
86013410 GTGTTAGTTG
86013420 ATAATGCCATTACC
1 ATAATGCCATTACC
*
86013434 ATAATGTCATTACC
1 ATAATGCCATTACC
86013448 ATA
1 ATA
86013451 TTAAAACAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.32
Consensus pattern (14 bp):
ATAATGCCATTACC
Found at i:86013592 original size:15 final size:15
Alignment explanation
Indices: 86013568--86013627 Score: 68
Period size: 15 Copynumber: 4.0 Consensus size: 15
86013558 ATTTGGATTA
*
86013568 ATTTATTTAAATATT
1 ATTTAATTAAATATT
* *
86013583 GTTTAATTAAA-ATA
1 ATTTAATTAAATATT
*
86013597 ATTTATTTAAATATT
1 ATTTAATTAAATATT
86013612 ATTTAATTAAAATATT
1 ATTTAATT-AAATATT
86013628 TTTTTCCATG
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
14 11 0.31
15 18 0.50
16 7 0.19
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:86013601 original size:29 final size:29
Alignment explanation
Indices: 86013566--86013625 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
86013556 TAATTTGGAT
*
86013566 TAATTTATTTAAATATTGTTTAATTAAAA
1 TAATTTATTTAAATATTATTTAATTAAAA
86013595 TAATTTATTTAAATATTATTTAATTAAAA
1 TAATTTATTTAAATATTATTTAATTAAAA
86013624 TA
1 TA
86013626 TTTTTTTCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
TAATTTATTTAAATATTATTTAATTAAAA
Found at i:86013626 original size:16 final size:16
Alignment explanation
Indices: 86013576--86013627 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
86013566 TAATTTATTT
*
86013576 AAATATTGTTTAATTA
1 AAATATTATTTAATTA
*
86013592 AAATA--ATTT-ATTT
1 AAATATTATTTAATTA
86013605 AAATATTATTTAATTA
1 AAATATTATTTAATTA
86013621 AAATATT
1 AAATATT
86013628 TTTTTCCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 8 0.27
14 3 0.10
15 4 0.13
16 15 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
AAATATTATTTAATTA
Found at i:86013786 original size:15 final size:15
Alignment explanation
Indices: 86013761--86013815 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
86013751 ATTTAGATTA
*
86013761 ATTTACTTAAATATT
1 ATTTAATTAAATATT
* *
86013776 ATTTAACTAAA-ATA
1 ATTTAATTAAATATT
*
86013790 ATTTATTTAAATATT
1 ATTTAATTAAATATT
86013805 ATTTAATTAAA
1 ATTTAATTAAA
86013816 AAAATTCATG
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
14 11 0.34
15 21 0.66
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:86013793 original size:29 final size:29
Alignment explanation
Indices: 86013759--86013821 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
86013749 TAATTTAGAT
86013759 TAATTTACTTAAATATTATTTAACTAAAA
1 TAATTTACTTAAATATTATTTAACTAAAA
* *
86013788 TAATTTATTTAAATATTATTTAATTAAAA
1 TAATTTACTTAAATATTATTTAACTAAAA
*
86013817 AAATT
1 TAATT
86013822 CATGTGATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (29 bp):
TAATTTACTTAAATATTATTTAACTAAAA
Found at i:86013812 original size:193 final size:186
Alignment explanation
Indices: 86013469--86013987 Score: 788
Period size: 188 Copynumber: 2.7 Consensus size: 186
86013459 AGGTTCAATC
*
86013469 TTATTTTT-TATTTTTTTTTCATGGAACAAAGTTGACATTTCATCTTATACGGTTTTCAACTTTT
1 TTATTTTTATATTTCTTTTTCAT-GAACAAAGTTGACATTTCATCTTATACGGTTTTCAACTTTT
* * *
86013533 TATACACAAGTTTTTAAATTATATAATTTGGATTAATTTATTTAAATATTGTTTAATTAAAATAA
65 TATACACAATTTTTTAAATTACATAATTTGGATTAATTTATTTAAATATTATTTAATTAAAATAA
** *
86013598 TTTATTTAAATATTATTTAATTAAAATATTTTTTTCCATGCGATTTTCCACACCGTCAAATT
130 TTTATTTAAATATTATTTAATTAAAA-A---AATT-CATGCGATTTTCCACACCATCAAATT
86013660 TTATTTTTATGATTTCTTTTTCATGAAACAAAGTTGACATTTCATCTTATACGGTTTTCAACTTT
1 TTATTTTTAT-ATTTCTTTTTCATG-AACAAAGTTGACATTTCATCTTATACGGTTTTCAACTTT
* * *
86013725 TTATACACAATTTTTTAAATTACATAATTTAGATTAATTTACTTAAATATTATTTAACTAAAATA
64 TTATACACAATTTTTTAAATTACATAATTTGGATTAATTTATTTAAATATTATTTAATTAAAATA
* *
86013790 ATTTATTTAAATATTATTTAATTAAAAAAATTCATGTGATTTTCCACATCATCAAATT
129 ATTTATTTAAATATTATTTAATTAAAAAAATTCATGCGATTTTCCACACCATCAAATT
* * *
86013848 TTATTTTAATTATTTCTTTTTCTTTGAACAAAGTTGACATTTCATCTTATACGGTTTTCACCTTT
1 TTATTTTTA-TATTTCTTTTTC-ATGAACAAAGTTGACATTTCATCTTATACGGTTTTCAACTTT
*
86013913 TTATACACAATTTTTTAAATTACATAATTTGGATTAATTTATTTAATTATTATTTAATTAAAATA
64 TTATACACAATTTTTTAAATTACATAATTTGGATTAATTTATTTAAATATTATTTAATTAAAATA
*
86013978 ATTTTTTTAA
129 ATTTATTTAA
86013988 GAGAAATAAT
Statistics
Matches: 303, Mismatches: 20, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
188 150 0.50
189 5 0.02
191 8 0.03
192 3 0.01
193 137 0.45
ACGTcount: A:0.34, C:0.10, G:0.06, T:0.50
Consensus pattern (186 bp):
TTATTTTTATATTTCTTTTTCATGAACAAAGTTGACATTTCATCTTATACGGTTTTCAACTTTTT
ATACACAATTTTTTAAATTACATAATTTGGATTAATTTATTTAAATATTATTTAATTAAAATAAT
TTATTTAAATATTATTTAATTAAAAAAATTCATGCGATTTTCCACACCATCAAATT
Found at i:86014042 original size:27 final size:27
Alignment explanation
Indices: 86014012--86014068 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
86014002 ATCTTAATGT
*
86014012 TAAATATACATCATATAATAACTTACA
1 TAAATATAAATCATATAATAACTTACA
* *
86014039 TAAATATAAATTATATCATAACTTACA
1 TAAATATAAATCATATAATAACTTACA
86014066 TAA
1 TAA
86014069 CTTATATACC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (27 bp):
TAAATATAAATCATATAATAACTTACA
Found at i:86014067 original size:9 final size:9
Alignment explanation
Indices: 86014055--86014313 Score: 77
Period size: 9 Copynumber: 30.1 Consensus size: 9
86014045 TAAATTATAT
86014055 CATAACTTA
1 CATAACTTA
86014064 CATAACTTA
1 CATAACTTA
* *
86014073 TATACCTTA
1 CATAACTTA
86014082 CATAA--TA
1 CATAACTTA
*
86014089 CATAA-ATA
1 CATAACTTA
* **
86014097 TATTCCTTA
1 CATAACTTA
86014106 CATAA--TA
1 CATAACTTA
86014113 CATAA---A
1 CATAACTTA
*
86014119 TATAACTTA
1 CATAACTTA
*
86014128 CAAAACTTA
1 CATAACTTA
86014137 CATAAC--A
1 CATAACTTA
*
86014144 CATAA-ATA
1 CATAACTTA
* * *
86014152 TATATCATA
1 CATAACTTA
86014161 TCATAACTTA
1 -CATAACTTA
*
86014171 AATAACTTA
1 CATAACTTA
86014180 CATAA--TA
1 CATAACTTA
*
86014187 CATAA-ATA
1 CATAACTTA
* * *
86014195 TATATCATA
1 CATAACTTA
86014204 TCATAACTTA
1 -CATAACTTA
*
86014214 CATACCTTA
1 CATAACTTA
*
86014223 CATAAATGTA
1 CATAACT-TA
* *
86014233 TATGA--TA
1 CATAACTTA
86014240 TCATAACTTA
1 -CATAACTTA
**
86014250 CATGCCTTA
1 CATAACTTA
*
86014259 CATAAATGT-
1 CATAACT-TA
* *
86014268 -ATATCATA
1 CATAACTTA
*
86014276 TCATAAGTTA
1 -CATAACTTA
86014286 CATAACTTA
1 CATAACTTA
*
86014295 CAAAACTTA
1 CATAACTTA
*
86014304 CTTAACTTA
1 CATAACTTA
86014313 C
1 C
86014314 GTAATACATA
Statistics
Matches: 181, Mismatches: 49, Indels: 40
0.67 0.18 0.15
Matches are distributed among these distances:
6 5 0.03
7 30 0.17
8 19 0.10
9 102 0.56
10 25 0.14
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:86014070 original size:36 final size:36
Alignment explanation
Indices: 86014029--86014296 Score: 183
Period size: 36 Copynumber: 7.3 Consensus size: 36
86014019 ACATCATATA
*
86014029 ATAACTTACATAAATATAAATTATATCATAACTTAC
1 ATAACTTACATAAATATAAATCATATCATAACTTAC
* * * **
86014065 ATAACTTATATACCTTACATAATACATAAATAT-ATTCCTTAC
1 ATAACTTACATA----A-AT-ATAAAT-CATATCATAACTTAC
* *
86014107 ATAA--TACATAAATAT-AA-CTTA-CAAAACTTAC
1 ATAACTTACATAAATATAAATCATATCATAACTTAC
* *
86014138 ATAAC--ACATAAATATATATCATATCATAACTTAA
1 ATAACTTACATAAATATAAATCATATCATAACTTAC
86014172 ATAACTTACATAATACATAAATATATATCATATCATAACTTAC
1 ATAACTTACAT-A-A-AT--ATA-A-ATCATATCATAACTTAC
* * * *
86014215 ATACCTTACATAAATGTATATGATATCATAACTTAC
1 ATAACTTACATAAATATAAATCATATCATAACTTAC
** * * *
86014251 ATGCCTTACATAAATGTATATCATATCATAAGTTAC
1 ATAACTTACATAAATATAAATCATATCATAACTTAC
86014287 ATAACTTACA
1 ATAACTTACA
86014297 AAACTTACTT
Statistics
Matches: 184, Mismatches: 27, Indels: 42
0.73 0.11 0.17
Matches are distributed among these distances:
31 22 0.12
32 1 0.01
33 4 0.02
34 15 0.08
35 2 0.01
36 73 0.40
37 1 0.01
38 3 0.02
39 2 0.01
40 8 0.04
41 6 0.03
42 17 0.09
43 30 0.16
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (36 bp):
ATAACTTACATAAATATAAATCATATCATAACTTAC
Found at i:86014104 original size:24 final size:24
Alignment explanation
Indices: 86014062--86014129 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
86014052 TATCATAACT
*
86014062 TACATAACTTATATACCTTACATAA
1 TACATAA-ATATATACCTTACATAA
*
86014087 TACATAAATATATTCCTTACATAA
1 TACATAAATATATACCTTACATAA
86014111 TACATAAATATA-A-CTTACA
1 TACATAAATATATACCTTACA
86014130 AAACTTACAT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
22 6 0.15
24 27 0.68
25 7 0.17
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (24 bp):
TACATAAATATATACCTTACATAA
Found at i:86014138 original size:24 final size:24
Alignment explanation
Indices: 86014029--86014141 Score: 90
Period size: 24 Copynumber: 4.5 Consensus size: 24
86014019 ACATCATATA
*
86014029 ATAACTTACATAAATATAAATTATATC
1 ATAACTTACATAAATAT-AACT-TA-C
*
86014056 ATAACTTACATAACTTATATACCTTAC
1 ATAACTTACATAA---ATATAACTTAC
*
86014083 ATAA--TACATAAATATATTCCTTAC
1 ATAACTTACATAAATATA--ACTTAC
86014107 ATAA--TACATAAATATAACTTAC
1 ATAACTTACATAAATATAACTTAC
*
86014129 AAAACTTACATAA
1 ATAACTTACATAA
86014142 CACATAAATA
Statistics
Matches: 75, Mismatches: 4, Indels: 17
0.78 0.04 0.18
Matches are distributed among these distances:
22 13 0.17
24 29 0.39
25 7 0.09
27 18 0.24
28 2 0.03
29 2 0.03
30 4 0.05
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.35
Consensus pattern (24 bp):
ATAACTTACATAAATATAACTTAC
Found at i:86014168 original size:43 final size:43
Alignment explanation
Indices: 86014120--86014227 Score: 173
Period size: 43 Copynumber: 2.5 Consensus size: 43
86014110 ATACATAAAT
86014120 ATAACTTACAAAACTTACATAACACATAAATATATATCATATC
1 ATAACTTACAAAACTTACATAACACATAAATATATATCATATC
*
86014163 ATAACTTA-AATAACTTACATAATACATAAATATATATCATATC
1 ATAACTTACAA-AACTTACATAACACATAAATATATATCATATC
* *
86014206 ATAACTTACATACCTTACATAA
1 ATAACTTACAAAACTTACATAA
86014228 ATGTATATGA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
42 2 0.03
43 57 0.95
44 1 0.02
ACGTcount: A:0.50, C:0.18, G:0.00, T:0.32
Consensus pattern (43 bp):
ATAACTTACAAAACTTACATAACACATAAATATATATCATATC
Found at i:86023203 original size:43 final size:42
Alignment explanation
Indices: 86023153--86023460 Score: 149
Period size: 43 Copynumber: 7.0 Consensus size: 42
86023143 TGGCATTTTT
86023153 TAGAAAAGTGCCGCTAAAGGTCACTTTCTTTAGCGGCGTTTG
1 TAGAAAAGTGCCGCTAAAGGTCACTTTCTTTAGCGGCGTTTG
* * *
86023195 TATGAAAAGCATCGCTAAAGGTCACTAAAGGTCACGTTCTTTAGCGGCATCTTCG
1 TA-GAAAAG--T-GC-------CGCTAAAGGTCACTTTCTTTAGCGGCGT-TT-G
* * * *
86023250 -AGAAAAGCGCTGCTAAATGTTA-TGTTCTTTAGCGGCGTTTG
1 TAGAAAAGTGCCGCTAAAGGTCACT-TTCTTTAGCGGCGTTTG
** * * * * * * *
86023291 TATGAAAAACGTCGCTATAGGTTACGTTATTTAGCGGCATTTT
1 TA-GAAAAGTGCCGCTAAAGGTCACTTTCTTTAGCGGCGTTTG
* * * * *
86023334 TGAGAAAAGCGCCTCAAAAGGTCATTTTCTTTAGCGGCATTTG
1 T-AGAAAAGTGCCGCTAAAGGTCACTTTCTTTAGCGGCGTTTG
* * * * *
86023377 TATAAAAAGCT-CTGCTAAAGGTCACATTCTTTAGCAGCGCTTTC
1 TA-GAAAAG-TGCCGCTAAAGGTCACTTTCTTTAGCGGCG-TTTG
* *
86023421 TA-AAAAATGCCGCTAAAAGTCA-TGTTCTTTAGCGGCGTTT
1 TAGAAAAGTGCCGCTAAAGGTCACT-TTCTTTAGCGGCGTTT
86023461 TTTTTATAAA
Statistics
Matches: 199, Mismatches: 44, Indels: 47
0.69 0.15 0.16
Matches are distributed among these distances:
41 5 0.03
42 33 0.17
43 115 0.58
44 6 0.03
45 1 0.01
46 2 0.01
50 2 0.01
53 31 0.16
54 3 0.02
55 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (42 bp):
TAGAAAAGTGCCGCTAAAGGTCACTTTCTTTAGCGGCGTTTG
Found at i:86023377 original size:86 final size:85
Alignment explanation
Indices: 86023223--86023456 Score: 221
Period size: 86 Copynumber: 2.7 Consensus size: 85
86023213 AGGTCACTAA
* * * * *
86023223 AGGTCACGTTCTTTAGCGGCATCTTCGAGAAAAGCGCTGCTAAATGTTATGTTCTTTAGCGGCGT
1 AGGTCACGTTATTTAGCGGCATCTTCGAGAAAAGCGCTGCAAAAGGTCATGTTCTTTAGCGGCAT
86023288 TTGTATGAAAAACGTCGCTAT
66 TTGTAT-AAAAACGTCGCTAT
* * * *
86023309 AGGTTACGTTATTTAGCGGCATTTTTGAGAAAAGCGCCT-CAAAAGGTCATTTTCTTTAGCGGCA
1 AGGTCACGTTATTTAGCGGCATCTTCGAGAAAAGCG-CTGCAAAAGGTCATGTTCTTTAGCGGCA
*
86023373 TTTGTATAAAAA-GCTCTGCTAA
65 TTTGTATAAAAACG-TC-GCTAT
* * * *
86023395 AGGTCACATTCTTTAGCAGCGC-T-TTCTAAAAAATGC-C-GCTAAAA-GTCATGTTCTTTAGCG
1 AGGTCACGTTATTTAGC-G-GCATCTTCGAGAAAA-GCGCTGC-AAAAGGTCATGTTCTTTAGCG
86023455 GC
62 GC
86023457 GTTTTTTTTA
Statistics
Matches: 123, Mismatches: 17, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
84 1 0.01
85 26 0.21
86 88 0.72
87 6 0.05
88 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (85 bp):
AGGTCACGTTATTTAGCGGCATCTTCGAGAAAAGCGCTGCAAAAGGTCATGTTCTTTAGCGGCAT
TTGTATAAAAACGTCGCTAT
Found at i:86025575 original size:40 final size:40
Alignment explanation
Indices: 86025528--86025609 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
86025518 CCCAACACAC
*
86025528 TATATGGGGATAAAATCGACCCACCCATCCCTACACACCA
1 TATATGGGGATAAAACCGACCCACCCATCCCTACACACCA
* * ** *
86025568 TATATGGGGATACAACCGTCTTATCCATCCCTACACACCA
1 TATATGGGGATAAAACCGACCCACCCATCCCTACACACCA
86025608 TA
1 TA
86025610 AGGTACCGCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.33, C:0.33, G:0.12, T:0.22
Consensus pattern (40 bp):
TATATGGGGATAAAACCGACCCACCCATCCCTACACACCA
Found at i:86026052 original size:17 final size:18
Alignment explanation
Indices: 86026014--86026056 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
86026004 AACCCAGATT
*
86026014 CCCACATGCCTGTGTGAG
1 CCCACACGCCTGTGTGAG
*
86026032 CCCACACGCTTGTGT-AG
1 CCCACACGCCTGTGTGAG
86026049 CCCACACG
1 CCCACACG
86026057 ACCCATTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.19, C:0.40, G:0.23, T:0.19
Consensus pattern (18 bp):
CCCACACGCCTGTGTGAG
Found at i:86029046 original size:114 final size:113
Alignment explanation
Indices: 86028843--86029095 Score: 305
Period size: 114 Copynumber: 2.3 Consensus size: 113
86028833 TATATAATAG
* * *
86028843 TTACTAACAAAATAACTTTCAAATAAATTAAAAAAATTAAAAGATTACATTCATAACCTAATAAA
1 TTACTAACAAAATAACTTTAAAATAAATTAAAAAAATTAAAAAATTACATTCATAACCTAACAAA
*
86028908 TCACAATAAACCATAAACCTTAAACAAACAATTAACCTAATCACAAAAC
66 TCACAATAAAACATAAA-CTTAAACAAACAATTAACCTAATCACAAAAC
86028957 TTACTGAA-AAAATAACTTTAAAATAAA-T-AAAAAATTAGTAAAAATTTACATTCATAACCTAA
1 TTACT-AACAAAATAACTTTAAAATAAATTAAAAAAATTA--AAAAA-TTACATTCATAACCTAA
* *
86029019 CAAATCACAATAAAACATTAAA-TTAAACAAATAATT----T-AT-A-ATAA-
62 CAAATCACAATAAAACA-TAAACTTAAACAAACAATTAACCTAATCACAAAAC
*
86029063 TAACTAACAAAATAACTTTAAAATAAATTAAAA
1 TTACTAACAAAATAACTTTAAAATAAATTAAAA
86029096 TCAACATAAA
Statistics
Matches: 124, Mismatches: 7, Indels: 22
0.81 0.05 0.14
Matches are distributed among these distances:
105 2 0.02
106 23 0.19
107 4 0.03
108 4 0.03
109 2 0.02
110 1 0.01
112 9 0.07
113 1 0.01
114 40 0.32
115 34 0.27
116 4 0.03
ACGTcount: A:0.58, C:0.14, G:0.01, T:0.27
Consensus pattern (113 bp):
TTACTAACAAAATAACTTTAAAATAAATTAAAAAAATTAAAAAATTACATTCATAACCTAACAAA
TCACAATAAAACATAAACTTAAACAAACAATTAACCTAATCACAAAAC
Found at i:86029095 original size:10 final size:11
Alignment explanation
Indices: 86029071--86029116 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
86029061 AATAACTAAC
*
86029071 AAAATAACTTT
1 AAAATAACATT
86029082 AAAATAA-ATT
1 AAAATAACATT
86029092 AAAATCAACA-T
1 AAAAT-AACATT
*
86029103 AAAATAACAAT
1 AAAATAACATT
86029114 AAA
1 AAA
86029117 CAAACTACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
10 11 0.35
11 19 0.61
12 1 0.03
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATAACATT
Found at i:86029401 original size:27 final size:27
Alignment explanation
Indices: 86029336--86029402 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
86029326 ACTAGTGCTA
*
86029336 CCTATCAAACAGGGGTCACCAGTGCCG
1 CCTATCAAATAGGGGTCACCAGTGCCG
* * ** *
86029363 CCTATTAGATAGGGGTCACTGGTGTCG
1 CCTATCAAATAGGGGTCACCAGTGCCG
*
86029390 CTTATCAAATAGG
1 CCTATCAAATAGG
86029403 CACCACCCCT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (27 bp):
CCTATCAAATAGGGGTCACCAGTGCCG
Found at i:86029538 original size:22 final size:23
Alignment explanation
Indices: 86029500--86029546 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
86029490 AAGCATCACT
* *
86029500 AATAAAATAATATTTTTTTTAAA
1 AATAAAATAATAATTTTTTAAAA
86029523 AATAAAA-AATAATTTTTTAAAA
1 AATAAAATAATAATTTTTTAAAA
86029545 AA
1 AA
86029547 ATTTGTGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
AATAAAATAATAATTTTTTAAAA
Found at i:86029546 original size:23 final size:23
Alignment explanation
Indices: 86029500--86029548 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
86029490 AAGCATCACT
**
86029500 AATAAAATAATATTTTTTTTAAA
1 AATAAAATAATATTTTTTAAAAA
86029523 AATAAAA-AATAATTTTTTAAAAA
1 AATAAAATAAT-ATTTTTTAAAAA
86029546 AAT
1 AAT
86029549 TTGTGGTGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
AATAAAATAATATTTTTTAAAAA
Found at i:86029636 original size:28 final size:29
Alignment explanation
Indices: 86029585--86029665 Score: 103
Period size: 29 Copynumber: 2.8 Consensus size: 29
86029575 CCATCGCTAC
*
86029585 TGACATAAC-ATTTTCGTATTTAATCCTAT
1 TGACATTACAATTTT-GTATTTAATCCTAT
*
86029614 TGGCA-TACAATTTTGTATTTAATCCTAT
1 TGACATTACAATTTTGTATTTAATCCTAT
* *
86029642 TGACATTTCATTTTTGTATTTAAT
1 TGACATTACAATTTTGTATTTAAT
86029666 TTTTTTTACA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 20 0.44
29 25 0.56
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.49
Consensus pattern (29 bp):
TGACATTACAATTTTGTATTTAATCCTAT
Found at i:86030784 original size:22 final size:22
Alignment explanation
Indices: 86030743--86030784 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
86030733 CACACCCTAT
*
86030743 CAAGCTTTAGTGTCGCGACACC
1 CAAGCTTTAGTGTCACGACACC
* *
86030765 CAAGCTTTGGTGTCATGACA
1 CAAGCTTTAGTGTCACGACA
86030785 TCCTTAACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (22 bp):
CAAGCTTTAGTGTCACGACACC
Found at i:86036596 original size:34 final size:34
Alignment explanation
Indices: 86036534--86036647 Score: 122
Period size: 34 Copynumber: 3.4 Consensus size: 34
86036524 TACTAATTTG
* * *
86036534 TTATAAGAATG-TCTATTACTATCATATTGATCTA
1 TTATAAGCATGCT-TATTGCTACCATATTGATCTA
** * *
86036568 TTATAAGCATGCTTATTGCTACTGTATTGATTTG
1 TTATAAGCATGCTTATTGCTACCATATTGATCTA
* *
86036602 TTATAAGCATGTTTATTGCTACCATATTGAACTA
1 TTATAAGCATGCTTATTGCTACCATATTGATCTA
*
86036636 CTATAAGCATGC
1 TTATAAGCATGC
86036648 CATATTGCAT
Statistics
Matches: 64, Mismatches: 15, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
34 63 0.98
35 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (34 bp):
TTATAAGCATGCTTATTGCTACCATATTGATCTA
Found at i:86038224 original size:45 final size:45
Alignment explanation
Indices: 86038154--86038275 Score: 113
Period size: 45 Copynumber: 2.7 Consensus size: 45
86038144 TTATGAGTAG
* * ** * * *
86038154 TTTATCTGCACCGATAAGTATTTTATCCACATCATATTAGTAGCT
1 TTTATCAGCACCAATAAGTGGTTTATCCACACCATATTAGCAACT
* *
86038199 TTTATCTA-CACCAATGAA-TGGTTTATCAACACCGTATTAGCAACT
1 TTTATC-AGCACCAAT-AAGTGGTTTATCCACACCATATTAGCAACT
* *
86038244 TTTTTCAGCACGAATAAGTGGTTTATCCACAC
1 TTTATCAGCACCAATAAGTGGTTTATCCACAC
86038276 ATTACTAGCA
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
44 3 0.05
45 56 0.92
46 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.36
Consensus pattern (45 bp):
TTTATCAGCACCAATAAGTGGTTTATCCACACCATATTAGCAACT
Found at i:86039828 original size:26 final size:27
Alignment explanation
Indices: 86039794--86039882 Score: 121
Period size: 26 Copynumber: 3.3 Consensus size: 27
86039784 ATATGAACAA
*
86039794 AATTCTCTCTATG-TTTTTCTTTTCAAG
1 AATT-TCTCTATGAGTTTTCTTTTCAAG
86039821 AATTTCTC-ATGAGTTTTCTTTTCAAG
1 AATTTCTCTATGAGTTTTCTTTTCAAG
*
86039847 AATTTCTCT-TGAGTTTTCTTTTAGAAG
1 AATTTCTCTATGAGTTTTCTTTT-CAAG
86039874 AATTTCTCT
1 AATTTCTCT
86039883 TGGAGAGGAA
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
25 3 0.05
26 38 0.67
27 16 0.28
ACGTcount: A:0.21, C:0.16, G:0.10, T:0.53
Consensus pattern (27 bp):
AATTTCTCTATGAGTTTTCTTTTCAAG
Found at i:86039882 original size:27 final size:26
Alignment explanation
Indices: 86039808--86039884 Score: 127
Period size: 26 Copynumber: 2.9 Consensus size: 26
86039798 CTCTCTATGT
*
86039808 TTTTCTTTTCAAGAATTTCTCATGAG
1 TTTTCTTTTCAAGAATTTCTCTTGAG
86039834 TTTTCTTTTCAAGAATTTCTCTTGAG
1 TTTTCTTTTCAAGAATTTCTCTTGAG
*
86039860 TTTTCTTTTAGAAGAATTTCTCTTG
1 TTTTCTTTT-CAAGAATTTCTCTTG
86039885 GAGAGGAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
26 34 0.71
27 14 0.29
ACGTcount: A:0.21, C:0.14, G:0.12, T:0.53
Consensus pattern (26 bp):
TTTTCTTTTCAAGAATTTCTCTTGAG
Found at i:86040481 original size:20 final size:19
Alignment explanation
Indices: 86040458--86040500 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
86040448 GAAAAAGAGG
*
86040458 AAAAAAAATAG-AAAACTA
1 AAAAAAAAAAGAAAAACTA
*
86040476 CAAAAAATAAAGAAAAACTA
1 -AAAAAAAAAAGAAAAACTA
86040496 AAAAA
1 AAAAA
86040501 TATTTTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.79, C:0.07, G:0.05, T:0.09
Consensus pattern (19 bp):
AAAAAAAAAAGAAAAACTA
Found at i:86041925 original size:19 final size:19
Alignment explanation
Indices: 86041873--86041926 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
86041863 TTTTCATCTA
* *
86041873 TCTTGTTTCATTTTTTTTT
1 TCTTGTTTCATTGTTTTGT
* *
86041892 TTTTGTTATTA-TGTTTTGT
1 TCTTGTT-TCATTGTTTTGT
86041911 TCTTGTTTCATTGTTT
1 TCTTGTTTCATTGTTT
86041927 CTAATCTTTA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
18 2 0.07
19 23 0.85
20 2 0.07
ACGTcount: A:0.07, C:0.07, G:0.11, T:0.74
Consensus pattern (19 bp):
TCTTGTTTCATTGTTTTGT
Found at i:86042523 original size:20 final size:20
Alignment explanation
Indices: 86042500--86042552 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 20
86042490 AATATATTTT
*
86042500 TTTTGAATTTTTTATAAA-TA
1 TTTTGAATTTTTGA-AAATTA
86042520 TTTTGAA-TTTTGAAAATTA
1 TTTTGAATTTTTGAAAATTA
86042539 TTTTGTAATTTTTG
1 TTTTG-AATTTTTG
86042553 TTGAGAGAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 12 0.41
20 9 0.31
21 5 0.17
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.60
Consensus pattern (20 bp):
TTTTGAATTTTTGAAAATTA
Found at i:86042540 original size:19 final size:19
Alignment explanation
Indices: 86042500--86042550 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
86042490 AATATATTTT
*
86042500 TTTTGAATTTTTTATAAATA
1 TTTTGAA-TTTTGATAAATA
86042520 TTTTGAATTTTGA-AAATTA
1 TTTTGAATTTTGATAAA-TA
86042539 TTTTGTAATTTT
1 TTTTG-AATTTT
86042551 TGTTGAGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 3 0.11
19 12 0.43
20 13 0.46
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (19 bp):
TTTTGAATTTTGATAAATA
Found at i:86048431 original size:53 final size:55
Alignment explanation
Indices: 86048351--86048463 Score: 203
Period size: 53 Copynumber: 2.1 Consensus size: 55
86048341 AAAACAAATG
86048351 TAAATATGCCATCATTCTTCTATCTTTTTC-TTTTTTAAAAAAAAAA-TAGATGT
1 TAAATATGCCATCATTCTTCTATCTTTTTCTTTTTTTAAAAAAAAAATTAGATGT
*
86048404 TAAATATGCCATCATTCTTTTATCTTTTTCTTTTTTTAAAAAAAAAATTAGATGT
1 TAAATATGCCATCATTCTTCTATCTTTTTCTTTTTTTAAAAAAAAAATTAGATGT
86048459 TAAAT
1 TAAAT
86048464 GTAAGTTTAC
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
53 29 0.51
54 16 0.28
55 12 0.21
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.47
Consensus pattern (55 bp):
TAAATATGCCATCATTCTTCTATCTTTTTCTTTTTTTAAAAAAAAAATTAGATGT
Found at i:86053049 original size:22 final size:23
Alignment explanation
Indices: 86053022--86053064 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
86053012 ATTAAACTTA
86053022 AAATTTAAAATATA-AAAAAATT
1 AAATTTAAAATATACAAAAAATT
*
86053044 AAATTTCAAATATACAAAAAA
1 AAATTTAAAATATACAAAAAA
86053065 AAATAAGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (23 bp):
AAATTTAAAATATACAAAAAATT
Found at i:86059527 original size:10 final size:10
Alignment explanation
Indices: 86059512--86059545 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
86059502 TTTTTGAATA
86059512 TTTATAATTT
1 TTTATAATTT
86059522 TTTATAATTT
1 TTTATAATTT
* *
86059532 TTTCTCATTT
1 TTTATAATTT
86059542 TTTA
1 TTTA
86059546 ATAAAAAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTATAATTT
Found at i:86070920 original size:31 final size:30
Alignment explanation
Indices: 86070876--86070944 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 30
86070866 GAATTATTCA
86070876 AAAGTTT-TCATTTAAGTCACTAAACTGTT
1 AAAGTTTCTCATTTAAGTCACTAAACTGTT
*
86070905 CGAAAGTTTCT-ATTTAAGTCACTAGACTGTT
1 --AAAGTTTCTCATTTAAGTCACTAAACTGTT
86070936 AAAGTTTCT
1 AAAGTTTCT
86070945 TTTTTCTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
29 9 0.25
31 26 0.72
32 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (30 bp):
AAAGTTTCTCATTTAAGTCACTAAACTGTT
Found at i:86076659 original size:25 final size:26
Alignment explanation
Indices: 86076631--86076686 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
86076621 TTCTTGTTTA
* *
86076631 GCTCGA-ATAAGCGTCCTGTTACATG
1 GCTCGATATAAGCATCCTGATACATG
* *
86076656 GCTC-ATATGAGCATCCTGATATATG
1 GCTCGATATAAGCATCCTGATACATG
86076681 GCTCGA
1 GCTCGA
86076687 GAGTGTGCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 1 0.04
25 23 0.92
26 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (26 bp):
GCTCGATATAAGCATCCTGATACATG
Found at i:86084130 original size:32 final size:32
Alignment explanation
Indices: 86084089--86084150 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
86084079 GCCATGGTAG
* *
86084089 GGGTCGTAGAGTGGCTCGAGCTGAGTCTTTAA
1 GGGTCGTAGAGAGGCTCGAGCTAAGTCTTTAA
86084121 GGGTCGTAGAGAGGCTCGAGCTAAGTCTTT
1 GGGTCGTAGAGAGGCTCGAGCTAAGTCTTT
86084151 CGTATCTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.19, C:0.16, G:0.37, T:0.27
Consensus pattern (32 bp):
GGGTCGTAGAGAGGCTCGAGCTAAGTCTTTAA
Found at i:86090066 original size:40 final size:40
Alignment explanation
Indices: 86090005--86090080 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
86089995 CGGTATTCTA
* *
86090005 TGGTGTGTAGGGTTAGATGGGTTGATTTTATCCCCATATT
1 TGGTGTGTAGGGATAGATGGGTCGATTTTATCCCCATATT
* *
86090045 TGGTGTGTAGGGATGGGTGGGTCGATTTTATCCCCA
1 TGGTGTGTAGGGATAGATGGGTCGATTTTATCCCCA
86090081 CATAGTGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.16, C:0.12, G:0.34, T:0.38
Consensus pattern (40 bp):
TGGTGTGTAGGGATAGATGGGTCGATTTTATCCCCATATT
Found at i:86114707 original size:2 final size:2
Alignment explanation
Indices: 86114700--86114725 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
86114690 TTTTAGATAG
86114700 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
86114726 TTAATAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86117384 original size:42 final size:42
Alignment explanation
Indices: 86117337--86117419 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
86117327 TAATAGAGTG
86117337 AGCACTTTATAAGATCTAACTGATAACTGAATAAGGTTCTTT
1 AGCACTTTATAAGATCTAACTGATAACTGAATAAGGTTCTTT
86117379 AGCACTTTATAAGATCTAACTGATAACTGAATAAGGTTCTT
1 AGCACTTTATAAGATCTAACTGATAACTGAATAAGGTTCTT
86117420 CTTACTAGCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35
Consensus pattern (42 bp):
AGCACTTTATAAGATCTAACTGATAACTGAATAAGGTTCTTT
Found at i:86117917 original size:2 final size:2
Alignment explanation
Indices: 86117912--86117967 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
86117902 CAGTGTGTAT
* *
86117912 TG TG TG TA TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
86117954 TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG
86117968 AAAAAGTATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.04, C:0.00, G:0.46, T:0.50
Consensus pattern (2 bp):
TG
Found at i:86120145 original size:43 final size:43
Alignment explanation
Indices: 86119988--86120215 Score: 176
Period size: 43 Copynumber: 5.3 Consensus size: 43
86119978 CGCTATATGT
* * * *
86119988 AACGCCGTTAAAGATCATGACATTTAGTGGCG-TTTTTAAAAA
1 AACGCCGCTAAAGATCAGGACATTTAGCGGCGCTTTTTTAAAA
* * *
86120030 AAGTGCCGCTAAA-AGTCCTGGTC-TTTAGCGGCGCTTTTTTCAAACA
1 AA-CGCCGCTAAAGA-T-CAGGACATTTAGCGGCGCTTTTTT-AAA-A
* * *
86120076 AACGCCGCTAAAGATTAGGACTTTTAGCGGTGCTTTTTTAAAA
1 AACGCCGCTAAAGATCAGGACATTTAGCGGCGCTTTTTTAAAA
* * * * *
86120119 AACGCCGCTAAAGACCAAGACATTTAGTGGC-ATTTTTAAAAA
1 AACGCCGCTAAAGATCAGGACATTTAGCGGCGCTTTTTTAAAA
* * * * *
86120161 AAGCGTCGCTAAAAATCGGGACCTTTAGCGGCGCTTTTATAAAA
1 AA-CGCCGCTAAAGATCAGGACATTTAGCGGCGCTTTTTTAAAA
* *
86120205 AATGCCACTAA
1 AACGCCGCTAA
86120216 TTTGCCCAGT
Statistics
Matches: 143, Mismatches: 33, Indels: 19
0.73 0.17 0.10
Matches are distributed among these distances:
42 14 0.10
43 72 0.50
44 24 0.17
45 29 0.20
46 4 0.03
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (43 bp):
AACGCCGCTAAAGATCAGGACATTTAGCGGCGCTTTTTTAAAA
Found at i:86123064 original size:38 final size:38
Alignment explanation
Indices: 86123022--86123098 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
86123012 ATTTTCGTGA
86123022 GCGTGAACGAGATCTTAAGACTTGTTTGTACTCACTAT
1 GCGTGAACGAGATCTTAAGACTTGTTTGTACTCACTAT
86123060 GCGTGAACGAGATCTTAAGACTTGTTTGTACTCACTAT
1 GCGTGAACGAGATCTTAAGACTTGTTTGTACTCACTAT
86123098 G
1 G
86123099 TTAAAAACAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (38 bp):
GCGTGAACGAGATCTTAAGACTTGTTTGTACTCACTAT
Found at i:86126125 original size:9 final size:9
Alignment explanation
Indices: 86126111--86126277 Score: 154
Period size: 9 Copynumber: 17.6 Consensus size: 9
86126101 ATGTATTAGT
86126111 TAAGTTATG
1 TAAGTTATG
86126120 TAAGTTGTTATG
1 TAA---GTTATG
*
86126132 TACGTTATG
1 TAAGTTATG
*
86126141 TGAGTTATG
1 TAAGTTATG
*
86126150 TAAATTATG
1 TAAGTTATG
86126159 TAAGTTATG
1 TAAGTTATG
*
86126168 TGAGTTATG
1 TAAGTTATG
86126177 TAAGTTGTTATG
1 TAA---GTTATG
*
86126189 TAAATTATG
1 TAAGTTATG
86126198 TAAGTTATG
1 TAAGTTATG
*
86126207 TGAGTTATG
1 TAAGTTATG
86126216 TAAGTTGTTATG
1 TAA---GTTATG
*
86126228 TAAATTATG
1 TAAGTTATG
*
86126237 TAAGTTATA
1 TAAGTTATG
*
86126246 TGAGTTATG
1 TAAGTTATG
86126255 TAAGTTATG
1 TAAGTTATG
* *
86126264 TAATTTATT
1 TAAGTTATG
86126273 TAAGT
1 TAAGT
86126278 AATGATCAAT
Statistics
Matches: 128, Mismatches: 21, Indels: 18
0.77 0.13 0.11
Matches are distributed among these distances:
9 102 0.80
12 26 0.20
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:86126158 original size:39 final size:40
Alignment explanation
Indices: 86126115--86126277 Score: 168
Period size: 39 Copynumber: 4.2 Consensus size: 40
86126105 ATTAGTTAAG
86126115 TTATGTAAGTTGTTATGT-ACGTTATGT-G-AGTTATGTAAA
1 TTATGTAAG-TGTTATGTGA-GTTATGTAGTAGTTATGTAAA
*
86126154 TTATGTAA--GTTATGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTGTTATGTGAGTTATGT-AGTAGTTATGTAAA
*
86126193 TTATGTAA--GTTATGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTGTTATGTGAGTTATGT-AGTAGTTATGTAAA
* *
86126232 TTATGTAA--GTTATATGAGTTATGTA--AGTTATGTAAT
1 TTATGTAAGTGTTATGTGAGTTATGTAGTAGTTATGTAAA
*
86126268 TTATTTAAGT
1 TTATGTAAGT
86126278 AATGATCAAT
Statistics
Matches: 113, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
36 30 0.27
37 1 0.01
38 2 0.02
39 80 0.71
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (40 bp):
TTATGTAAGTGTTATGTGAGTTATGTAGTAGTTATGTAAA
Found at i:86126187 original size:48 final size:44
Alignment explanation
Indices: 86126126--86126265 Score: 183
Period size: 39 Copynumber: 3.4 Consensus size: 44
86126116 TATGTAAGTT
*
86126126 GTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTGA
1 GTTATGTAAGTTATGT-AGTTATGTAAATTATGTAAGTTATGTGA
86126171 GTTATGTAAG---T-T-GTTATGTAAATTATGTAAGTTATGTGA
1 GTTATGTAAGTTATGTAGTTATGTAAATTATGTAAGTTATGTGA
*
86126210 GTTATGTAAG---T-T-GTTATGTAAATTATGTAAGTTATATGA
1 GTTATGTAAGTTATGTAGTTATGTAAATTATGTAAGTTATGTGA
86126249 GTTATGTAAGTTATGTA
1 GTTATGTAAGTTATGTA
86126266 ATTTATTTAA
Statistics
Matches: 88, Mismatches: 2, Indels: 11
0.87 0.02 0.11
Matches are distributed among these distances:
39 75 0.85
41 1 0.01
42 2 0.02
43 1 0.01
45 9 0.10
ACGTcount: A:0.31, C:0.01, G:0.23, T:0.46
Consensus pattern (44 bp):
GTTATGTAAGTTATGTAGTTATGTAAATTATGTAAGTTATGTGA
Found at i:86126204 original size:57 final size:57
Alignment explanation
Indices: 86126111--86126277 Score: 196
Period size: 57 Copynumber: 2.9 Consensus size: 57
86126101 ATGTATTAGT
* *
86126111 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATGTAAGTTATG
* * * *
86126168 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTTGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATGTAA---GTTATG
* * * *
86126228 TAAATTATGTAAGTT-ATATG--AGTTATGTAAGTTATGTAATTTATTTAAGT
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATGTAAGT
86126278 AATGATCAAT
Statistics
Matches: 94, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
54 2 0.02
57 69 0.73
59 4 0.04
60 19 0.20
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATGTAAGTTATG
Found at i:86126266 original size:48 final size:48
Alignment explanation
Indices: 86126111--86126266 Score: 188
Period size: 48 Copynumber: 3.2 Consensus size: 48
86126101 ATGTATTAGT
* * *
86126111 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAGTTATG
* * * * *
86126159 TAAGTTATGTGAGTTATGTAAGT-TGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGT-TATGTAAGTTATGTAAGTTATGTAAGTTATG
* * * *
86126207 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAGTTATG
86126255 TAAGTTATGTAA
1 TAAGTTATGTAA
86126267 TTTATTTAAG
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
47 4 0.04
48 81 0.91
49 4 0.04
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (48 bp):
TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAGTTATG
Found at i:86126862 original size:23 final size:23
Alignment explanation
Indices: 86126836--86126885 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
86126826 GTTCAAGTTT
86126836 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
86126859 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
86126882 ATTT
1 ATTT
86126886 GATTAATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:86130582 original size:21 final size:22
Alignment explanation
Indices: 86130556--86130600 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
86130546 GGTACTTTTG
86130556 GATTTAGGGTTTAT-GGTTTAA
1 GATTTAGGGTTTATAGGTTTAA
*
86130577 GATTTAGGGTTTATAGTTTTAA
1 GATTTAGGGTTTATAGGTTTAA
86130599 GA
1 GA
86130601 CGTTTTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (22 bp):
GATTTAGGGTTTATAGGTTTAA
Found at i:86130822 original size:7 final size:7
Alignment explanation
Indices: 86130810--86130834 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
86130800 TATTGATTTA
86130810 AGGGGTT
1 AGGGGTT
86130817 AGGGGTT
1 AGGGGTT
86130824 AGGGGTT
1 AGGGGTT
86130831 AGGG
1 AGGG
86130835 TTTACCATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.60, T:0.24
Consensus pattern (7 bp):
AGGGGTT
Found at i:86131627 original size:155 final size:155
Alignment explanation
Indices: 86131404--86131684 Score: 379
Period size: 155 Copynumber: 1.8 Consensus size: 155
86131394 TTTCTGAGGA
* * *
86131404 AGCGCCGCTAATGCCACTGAAGCTGAAAATAAACGACGACGTTCCGTTTAATCTTTTAGCGGCGT
1 AGCGCCGCTAATGCCACTGAAGCTGAAAATAAACGACGACGTTCCGTTGAATCTTTTAGCAGCAT
* * * *
86131469 TTTTAGGAAAA-CGCCGCTATATATCGACCTATAGCGGCGCTTTCTTAAAAACACCGCTAATGTT
66 TTTTA-AAAAAGCGCCGCTATAGATCAACCTATAGCGGCGCTTCCTTAAAAACACCGCTAATGTT
86131533 GGATCTATTGCGGCTTTTTTTTTGGT
130 GGATCTATTGCGGCTTTTTTTTTGGT
* * *
86131559 AGCGCCGCTAATGCCACTGAAGCTTAGAAA-AAACGATGTCGTTCTC-TTGAATCTTTTAGCAGC
1 AGCGCCGCTAATGCCACTGAAGCTGA-AAATAAACGACGACGTTC-CGTTGAATCTTTTAGCAGC
* * * * *
86131622 ATTTTTAAAAAAGCGCCGCTATAGGTCAATCTTTAGCGGCGCTTCCTTAAAAACGCCTCTAAT
64 ATTTTTAAAAAAGCGCCGCTATAGATCAACCTATAGCGGCGCTTCCTTAAAAACACCGCTAAT
86131685 TCTCTATCTT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
154 4 0.04
155 100 0.93
156 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (155 bp):
AGCGCCGCTAATGCCACTGAAGCTGAAAATAAACGACGACGTTCCGTTGAATCTTTTAGCAGCAT
TTTTAAAAAAGCGCCGCTATAGATCAACCTATAGCGGCGCTTCCTTAAAAACACCGCTAATGTTG
GATCTATTGCGGCTTTTTTTTTGGT
Found at i:86131716 original size:40 final size:40
Alignment explanation
Indices: 86131650--86131733 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
86131640 CTATAGGTCA
* * *
86131650 ATCTTTAGCGGCGCTTCCTTAAAAACGCCTCTAATTCTCT
1 ATCTTTAGCGGCGCTTCCTTAAAAACGCCGCTAATACTCG
* * *
86131690 ATCTTTAGCGGTGCTT-TTCTAGAAACGCCGCTAATACTCG
1 ATCTTTAGCGGCGCTTCCT-TAAAAACGCCGCTAATACTCG
86131730 ATCT
1 ATCT
86131734 ATTCGATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (40 bp):
ATCTTTAGCGGCGCTTCCTTAAAAACGCCGCTAATACTCG
Found at i:86131999 original size:46 final size:48
Alignment explanation
Indices: 86131906--86132035 Score: 194
Period size: 46 Copynumber: 2.8 Consensus size: 48
86131896 TGCCAAATAA
*
86131906 ATAGCCGAAGCTATAC-CAATCTCGCACACTAAGTGCTAATATATATAT
1 ATAGCCGAAGCTAT-CTCGATCTCGCACACTAAGTGCTAATATATATAT
*
86131954 ATAGCCGAAGCTATCTCGATCTCACACACTAAGTGC-AA-ATATATAT
1 ATAGCCGAAGCTATCTCGATCTCGCACACTAAGTGCTAATATATATAT
* *
86132000 ATAGCCGAAGCTATCTTGATTTCGCACACTAAGTGC
1 ATAGCCGAAGCTATCTCGATCTCGCACACTAAGTGC
86132036 CCATAATTAG
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
46 41 0.54
47 3 0.04
48 32 0.42
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (48 bp):
ATAGCCGAAGCTATCTCGATCTCGCACACTAAGTGCTAATATATATAT
Found at i:86135598 original size:40 final size:40
Alignment explanation
Indices: 86135551--86135713 Score: 181
Period size: 40 Copynumber: 4.1 Consensus size: 40
86135541 GACTAAGATT
*
86135551 CGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGACT
1 CGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGACC
* * *
86135591 CGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGACC
* * *
86135631 CGAAGGCATTTATGCTAGTGACCATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGACC
* * **
86135671 CGAAGGC-CTTGTGTGAGTGGTTATATCC-GGCTAA-ATCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGA-CC
86135709 CGAAG
1 CGAAG
86135714 ATACTTGGGT
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
37 1 0.01
38 13 0.12
39 15 0.14
40 77 0.73
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGACC
Found at i:86139827 original size:37 final size:37
Alignment explanation
Indices: 86139777--86139849 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
86139767 TCTCATATCT
86139777 GACCACATTATTAATCATTCGGCCACTAAACTCTTTA
1 GACCACATTATTAATCATTCGGCCACTAAACTCTTTA
*
86139814 GACCATATTATTAATCATTCGGCCACTAAACTCTTT
1 GACCACATTATTAATCATTCGGCCACTAAACTCTTT
86139850 GGTTTCACAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (37 bp):
GACCACATTATTAATCATTCGGCCACTAAACTCTTTA
Found at i:86144517 original size:21 final size:22
Alignment explanation
Indices: 86144479--86144525 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
86144469 AAAAATTACA
* *
86144479 AAAAGAATTCAAAGTAATTTTC
1 AAAAGAATTAAAAATAATTTTC
*
86144501 AAAA-AATTAAAAATAATTTTT
1 AAAAGAATTAAAAATAATTTTC
86144522 AAAA
1 AAAA
86144526 TTTAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (22 bp):
AAAAGAATTAAAAATAATTTTC
Found at i:86144544 original size:19 final size:19
Alignment explanation
Indices: 86144502--86144553 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
86144492 GTAATTTTCA
*
86144502 AAAAATTAAAAATAATTTT
1 AAAAATTTAAAATAATTTT
*
86144521 TAAAATTTAAAAT-ATTTAT
1 AAAAATTTAAAATAATTT-T
86144540 AAAAATTCTAAAAT
1 AAAAATT-TAAAAT
86144554 TTATATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 4 0.14
19 18 0.64
20 6 0.21
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTTAAAATAATTTT
Found at i:86144571 original size:26 final size:27
Alignment explanation
Indices: 86144507--86144578 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 27
86144497 TTTCAAAAAA
*
86144507 TTAAAAATAATTTTTAAAATTTAAAATAT
1 TTAAAAA-AA-TTCTAAAATTTAAAATAT
* * *
86144536 TTATAAAAATTCTAAAATTT-ATATTT
1 TTAAAAAAATTCTAAAATTTAAAATAT
86144562 TTAAAAAAATTCTAAAA
1 TTAAAAAAATTCTAAAA
86144579 AATAAATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
26 20 0.53
27 10 0.26
28 2 0.05
29 6 0.16
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (27 bp):
TTAAAAAAATTCTAAAATTTAAAATAT
Found at i:86160776 original size:15 final size:16
Alignment explanation
Indices: 86160747--86160780 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
86160737 AACAGAGAAG
86160747 CCAAGAATAAAGAAAT
1 CCAAGAATAAAGAAAT
86160763 CCAA-AATAAAGAAAT
1 CCAAGAATAAAGAAAT
86160778 CCA
1 CCA
86160781 TGATACCAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.62, C:0.18, G:0.09, T:0.12
Consensus pattern (16 bp):
CCAAGAATAAAGAAAT
Found at i:86168895 original size:33 final size:33
Alignment explanation
Indices: 86168858--86168923 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
86168848 TATGTGAGTC
86168858 TAGCTATACATGCCATATTTAACCTGTGATAGT
1 TAGCTATACATGCCATATTTAACCTGTGATAGT
*
86168891 TAGCTATACATGTCATATTTAACCTGTGATAGT
1 TAGCTATACATGCCATATTTAACCTGTGATAGT
86168924 GTGATATCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (33 bp):
TAGCTATACATGCCATATTTAACCTGTGATAGT
Found at i:86183105 original size:40 final size:40
Alignment explanation
Indices: 86183044--86183269 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 40
86183034 CTAACGGGGT
* * * * *
86183044 TAAGTCCCGAAGACATGTGTGCTAGTGATTAATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
86183084 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* * * *
86183124 TAAGTTCCGAAGGCATTGGTGCGAGTTACTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
86183164 TAAGTCCCGAAGGCATTGGTGCGAATTG-CT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCG-AGTGACTAAT-TCCGGGC
* * * *
86183204 TAAGACCCGAAGGCATTTATGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
* *
86183244 TAAGACCCGAAGGC-CTTGTGCGAGTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTG
86183270 GTTATATCCG
Statistics
Matches: 159, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 14 0.09
40 143 0.90
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
Found at i:86195733 original size:17 final size:17
Alignment explanation
Indices: 86195707--86195740 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86195697 ATTTGAAAAA
* *
86195707 AAAATTAAATTAAATAT
1 AAAATAAAATAAAATAT
86195724 AAAATAAAATAAAATAT
1 AAAATAAAATAAAATAT
86195741 TGATGCATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAATAAAATAAAATAT
Found at i:86197009 original size:14 final size:14
Alignment explanation
Indices: 86196990--86197017 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
86196980 TATGAAATAC
86196990 GGAATATTATTATA
1 GGAATATTATTATA
86197004 GGAATATTATTATA
1 GGAATATTATTATA
86197018 ATTTTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (14 bp):
GGAATATTATTATA
Found at i:86198012 original size:14 final size:14
Alignment explanation
Indices: 86197995--86198024 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86197985 ACATGCATAC
86197995 ATACATACATATAT
1 ATACATACATATAT
*
86198009 ATACATATATATAT
1 ATACATACATATAT
86198023 AT
1 AT
86198025 TTACATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (14 bp):
ATACATACATATAT
Found at i:86209441 original size:47 final size:47
Alignment explanation
Indices: 86209366--86209812 Score: 768
Period size: 47 Copynumber: 9.5 Consensus size: 47
86209356 TTCGGGACTC
* * * * * * *
86209366 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* * * *
86209413 GTCACATATATACACTTCCACATTCATCACGTTGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
86209460 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
86209507 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
86209554 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
86209601 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
86209648 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
86209695 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
86209742 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
86209789 ATCACATATATACACTTTCACATT
1 ATCACATATATACACTTTCACATT
86209813 TATTCAAATA
Statistics
Matches: 383, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 383 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:86219559 original size:48 final size:48
Alignment explanation
Indices: 86219480--86219573 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
86219470 AGGGAATTCT
* *
86219480 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
86219528 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
86219574 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:86222071 original size:48 final size:48
Alignment explanation
Indices: 86221992--86222085 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
86221982 AGGGAATTCT
* *
86221992 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
86222040 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
86222086 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:86222463 original size:26 final size:27
Alignment explanation
Indices: 86222373--86222471 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
86222363 TTAGTTTACC
* *
86222373 AAATTACTAAAAT-GCCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AATTTGTA
* * **
86222400 AAATTACTAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
86222427 AAATTACCAAAATACCCCTAATTTGT-
1 AAATTACCAAAATACCCCTAATTTGTA
86222453 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
86222472 GGCTAACATA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.30
27 41 0.65
28 3 0.05
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAATTTGTA
Found at i:86222954 original size:27 final size:27
Alignment explanation
Indices: 86222924--86223055 Score: 117
Period size: 27 Copynumber: 5.0 Consensus size: 27
86222914 ATGCCCTCAA
**
86222924 TTTGTAAAATTAATAAAATACCCCTGG
1 TTTGTAAAATTACCAAAATACCCCTGG
*
86222951 TTTGTAAAACTACCAAAATACCCCTGG
1 TTTGTAAAATTACCAAAATACCCCTGG
* * *
86222978 CTTGT-AAATTACCAAAATACCTCTGA
1 TTTGTAAAATTACCAAAATACCCCTGG
* * * * *
86223004 TTTGTGAAATTATCGAAATA-CTCTCGA
1 TTTGTAAAATTACCAAAATACCCCT-GG
* *
86223031 TTTGTAAAA-TATCGAAATACCCCTG
1 TTTGTAAAATTACCAAAATACCCCTG
86223056 TAGGGTAGAA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
26 37 0.41
27 53 0.59
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCCTGG
Found at i:86223023 original size:80 final size:79
Alignment explanation
Indices: 86222903--86223082 Score: 177
Period size: 80 Copynumber: 2.3 Consensus size: 79
86222893 TTAGTTTACC
* * *
86222903 AAATTACCAAAATGCC-CTCAATTTGTAAAATTAATAAAATACCC-CTGGTTTGTAAAACTACCA
1 AAATTACCAAAATACCTCT-GATTTGTAAAATTAATAAAATACCCTC-GATTTGTAAAA-TACCA
***
86222966 AAATACCCCTGGCTTGT
63 AAATACCCCTGGAGGGT
* * * * *
86222983 AAATTACCAAAATACCTCTGATTTGTGAAATT-ATCGAAATACTCTCGATTTGTAAAATATCGAA
1 AAATTACCAAAATACCTCTGATTTGTAAAATTAAT-AAAATACCCTCGATTTGTAAAATACCAAA
*
86223047 ATACCCCTGTAGGGT
65 ATACCCCTGGAGGGT
*
86223062 AGAATTACCGAAATACCTCTG
1 A-AATTACCAAAATACCTCTG
86223083 TAGGTTAGAA
Statistics
Matches: 83, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
79 19 0.23
80 61 0.73
81 3 0.04
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (79 bp):
AAATTACCAAAATACCTCTGATTTGTAAAATTAATAAAATACCCTCGATTTGTAAAATACCAAAA
TACCCCTGGAGGGT
Found at i:86223083 original size:27 final size:27
Alignment explanation
Indices: 86223043--86223259 Score: 281
Period size: 27 Copynumber: 8.0 Consensus size: 27
86223033 TGTAAAATAT
86223043 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
86223070 CGAAATACCTCTGTAGGTTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
86223097 TGAAATACCTCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
86223124 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
86223151 TGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
86223178 CGAAATACCCTTATAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
86223205 TGAAATACCCCTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * * *
86223232 CGAGATACCCTTGTGGGGAAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
86223259 C
1 C
86223260 AGTTTGCCCC
Statistics
Matches: 165, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:86223257 original size:81 final size:81
Alignment explanation
Indices: 86223011--86223245 Score: 298
Period size: 81 Copynumber: 2.9 Consensus size: 81
86223001 TGATTTGTGA
* ** *
86223011 AATTATCGAAATACTCTCGAT-TTGTA-AAATATCGAAATACCCCTGTAGGGTAGAATTACCGAA
1 AATTATCGAAATAC-CTCTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAA
*
86223074 ATA-CCTCTGTAGGTTAG
65 ATACCCT-TGTAGGGTAG
* * * *
86223091 AATTATTGAAATACCTCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAA
1 AATTATCGAAATACCTCTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
*
86223156 TACCCCTGTAGGGTAG
66 TACCCTTGTAGGGTAG
* * *
86223172 AATTATCGAAATACC-CTTATAGGGTAGAAATACTGAAATACCCCTGTAGGGTAAAATTACCGAG
1 AATTATCGAAATACCTC-TATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAA
86223236 ATACCCTTGT
65 ATACCCTTGT
86223246 GGGGAAAAAT
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
79 4 0.03
80 17 0.13
81 110 0.83
82 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (81 bp):
AATTATCGAAATACCTCTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCTTGTAGGGTAG
Found at i:86223500 original size:25 final size:25
Alignment explanation
Indices: 86223462--86223556 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
86223452 AGGAAGTGCT
*
86223462 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
86223487 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
86223512 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
86223537 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
86223557 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:86223569 original size:24 final size:25
Alignment explanation
Indices: 86223462--86223569 Score: 109
Period size: 25 Copynumber: 4.4 Consensus size: 25
86223452 AGGAAGTGCT
* *
86223462 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
* *
86223486 GAAAAG-GGCTTTGCCCTAGTTTACC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
86223511 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
*
86223536 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
86223560 AAAAGAGGCT
1 AAAAGAGGCT
86223570 AGGCCTCTAG
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
24 16 0.21
25 59 0.79
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:86231882 original size:17 final size:19
Alignment explanation
Indices: 86231846--86231883 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
86231836 ACCTAACATG
86231846 AATTAAATTTAAGTCATATT
1 AATTAAATTTAAG-CATATT
86231866 AATTAAA-TTAA-CATATT
1 AATTAAATTTAAGCATATT
86231883 A
1 A
86231884 GCATCACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
19 4 0.22
20 7 0.39
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (19 bp):
AATTAAATTTAAGCATATT
Found at i:86237702 original size:13 final size:13
Alignment explanation
Indices: 86237665--86237696 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
86237655 AATTATTATA
86237665 ATAATATAATAAT
1 ATAATATAATAAT
86237678 ATAATATAATAAT
1 ATAATATAATAAT
*
86237691 GTAATA
1 ATAATA
86237697 ACATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (13 bp):
ATAATATAATAAT
Found at i:86237723 original size:14 final size:14
Alignment explanation
Indices: 86237701--86237732 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
86237691 GTAATAACAT
*
86237701 AAAATAAAAGAAAG
1 AAAACAAAAGAAAG
86237715 AAAACAAAAGAAAG
1 AAAACAAAAGAAAG
86237729 AAAA
1 AAAA
86237733 AGAAATAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.03, G:0.12, T:0.03
Consensus pattern (14 bp):
AAAACAAAAGAAAG
Found at i:86237802 original size:13 final size:14
Alignment explanation
Indices: 86237765--86237795 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
86237755 CAGGGGGAAA
86237765 AAAGA-AGAAAAAG
1 AAAGACAGAAAAAG
86237778 AAAGACAGAAAAAG
1 AAAGACAGAAAAAG
86237792 AAAG
1 AAAG
86237796 GGGAAAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00
Consensus pattern (14 bp):
AAAGACAGAAAAAG
Found at i:86241493 original size:13 final size:14
Alignment explanation
Indices: 86241475--86241503 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
86241465 GTTGATAATA
86241475 ATTAATAT-ATTAT
1 ATTAATATAATTAT
86241488 ATTAATATAATTAT
1 ATTAATATAATTAT
86241502 AT
1 AT
86241504 ACTAGTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTAATATAATTAT
Found at i:86241625 original size:30 final size:30
Alignment explanation
Indices: 86241568--86241626 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
86241558 GCCTTTTGAA
* *
86241568 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTT
86241598 AATATTTACAAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGAC-ACCAAATTTT
86241627 GAGAATAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACACCAAATTTTT
Found at i:86257121 original size:17 final size:19
Alignment explanation
Indices: 86257099--86257133 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
86257089 TCAACTTAAA
86257099 TATAAT-CTT-TTTTTCTC
1 TATAATACTTATTTTTCTC
86257116 TATAATACTTATTTTTCT
1 TATAATACTTATTTTTCT
86257134 TATCCTATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.23, C:0.14, G:0.00, T:0.63
Consensus pattern (19 bp):
TATAATACTTATTTTTCTC
Found at i:86259409 original size:3 final size:3
Alignment explanation
Indices: 86259401--86259432 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
86259391 TAAGTTGGTT
86259401 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
86259433 GGAGTTTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:86259748 original size:18 final size:17
Alignment explanation
Indices: 86259721--86259756 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
86259711 ATTAAGTCAC
*
86259721 ACATAAATAAGTTTAAA
1 ACATAAATAAATTTAAA
86259738 ACATCAAATAAATTTAAA
1 ACAT-AAATAAATTTAAA
86259756 A
1 A
86259757 TTTGAATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.28
Consensus pattern (17 bp):
ACATAAATAAATTTAAA
Found at i:86260477 original size:17 final size:17
Alignment explanation
Indices: 86260452--86260484 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
86260442 GTTTTTTGTT
86260452 TTTTAGATTTAGGGTTA
1 TTTTAGATTTAGGGTTA
*
86260469 TTTTCGATTTAGGGTT
1 TTTTAGATTTAGGGTT
86260485 GTCTAGATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.03, G:0.24, T:0.55
Consensus pattern (17 bp):
TTTTAGATTTAGGGTTA
Found at i:86263873 original size:3 final size:3
Alignment explanation
Indices: 86263824--86263853 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
86263814 TCACGGTAAC
86263824 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
86263854 TACTACTGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:86267026 original size:9 final size:9
Alignment explanation
Indices: 86267008--86267056 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
86266998 TTGCAAGAAT
*
86267008 GATGATGAC
1 GATGAGGAC
*
86267017 GATGAAGAC
1 GATGAGGAC
*
86267026 GATGAGGAT
1 GATGAGGAC
86267035 GATGAGGAC
1 GATGAGGAC
*
86267044 GATGAGGAT
1 GATGAGGAC
86267053 GATG
1 GATG
86267057 TTTCTTCGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.35, C:0.06, G:0.41, T:0.18
Consensus pattern (9 bp):
GATGAGGAC
Found at i:86267038 original size:18 final size:18
Alignment explanation
Indices: 86267017--86267056 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
86267007 TGATGATGAC
86267017 GATGAAGACGATGAGGAT
1 GATGAAGACGATGAGGAT
*
86267035 GATGAGGACGATGAGGAT
1 GATGAAGACGATGAGGAT
86267053 GATG
1 GATG
86267057 TTTCTTCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.35, C:0.05, G:0.42, T:0.17
Consensus pattern (18 bp):
GATGAAGACGATGAGGAT
Found at i:86267942 original size:26 final size:25
Alignment explanation
Indices: 86267913--86267972 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
86267903 TTAAAAGTTT
86267913 ATAAAAATAGGGATAAATATATAAAA
1 ATAAAAATAGGGA-AAATATATAAAA
* * *
86267939 ATAAAATATATGTAAAATATCTAAAA
1 ATAAAA-ATAGGGAAAATATATAAAA
86267965 ATATAAAA
1 ATA-AAAA
86267973 AAATTATCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.27
Consensus pattern (25 bp):
ATAAAAATAGGGAAAATATATAAAA
Found at i:86269752 original size:23 final size:23
Alignment explanation
Indices: 86269725--86269771 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
86269715 AGGCTCAATA
86269725 TGAGAAGATTTATAAGTATTTTT
1 TGAGAAGATTTATAAGTATTTTT
86269748 TGAGAAGATTTATAAGTATTTTT
1 TGAGAAGATTTATAAGTATTTTT
86269771 T
1 T
86269772 AGAGGTTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (23 bp):
TGAGAAGATTTATAAGTATTTTT
Found at i:86271554 original size:21 final size:21
Alignment explanation
Indices: 86271512--86271559 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
86271502 GCGGTTGCTC
*
86271512 CAACTCAGCAACAGTCTACCT
1 CAACTCAGCAACAGGCTACCT
** *
86271533 CAACTCAGCAGGAGGCTGCCT
1 CAACTCAGCAACAGGCTACCT
86271554 CAACTC
1 CAACTC
86271560 CTTACGAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.29, C:0.38, G:0.17, T:0.17
Consensus pattern (21 bp):
CAACTCAGCAACAGGCTACCT
Found at i:86271857 original size:59 final size:58
Alignment explanation
Indices: 86271739--86271857 Score: 127
Period size: 59 Copynumber: 2.0 Consensus size: 58
86271729 TTTGAACTTG
* * * *
86271739 TGTAAATTTGCCTATACCTGTTACTGATTTATTAACTTAGGCATATTATTATTATTTTT
1 TGTAAATTTGCCTATACCTGCTACTGA-TTATTAACTTAGGCATATTATCACTAATTTT
*
86271798 TGTAAATTTGCCTATGA-TTGCTACTG-TTATCTAAACTTAGGCATA-TAGTCACTAATTTT
1 TGTAAATTTGCCTAT-ACCTGCTACTGATTAT-T-AACTTAGGCATATTA-TCACTAATTTT
86271857 T
1 T
86271858 TTTTATAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
57 4 0.08
58 3 0.06
59 43 0.84
60 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (58 bp):
TGTAAATTTGCCTATACCTGCTACTGATTATTAACTTAGGCATATTATCACTAATTTT
Found at i:86272219 original size:5 final size:5
Alignment explanation
Indices: 86272209--86272240 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
86272199 ACAATTGAGA
86272209 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
86272241 GAACACATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:86272234 original size:9 final size:9
Alignment explanation
Indices: 86272210--86272240 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
86272200 CAATTGAGAA
86272210 AAATAAAAT
1 AAATAAAAT
86272219 AAAATAAAAT
1 -AAATAAAAT
86272229 AAATAAAAT
1 AAATAAAAT
86272238 AAA
1 AAA
86272241 GAACACATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:86272604 original size:29 final size:29
Alignment explanation
Indices: 86272567--86272623 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
86272557 CACCTTGACA
* *
86272567 CGAATTCTCAATGAACAAGTTCTTCATCG
1 CGAACTCTCAATGAACAAGTTCTCCATCG
86272596 CGAACTCTCAATGAACAAGTTCTCCATC
1 CGAACTCTCAATGAACAAGTTCTCCATC
86272624 TCTTCCATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (29 bp):
CGAACTCTCAATGAACAAGTTCTCCATCG
Found at i:86282485 original size:13 final size:13
Alignment explanation
Indices: 86282467--86282492 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86282457 TTTTGACTTA
86282467 GCGCCAATACAAC
1 GCGCCAATACAAC
86282480 GCGCCAATACAAC
1 GCGCCAATACAAC
86282493 TTTGTGAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.38, G:0.15, T:0.08
Consensus pattern (13 bp):
GCGCCAATACAAC
Found at i:86286030 original size:24 final size:26
Alignment explanation
Indices: 86286001--86286050 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
86285991 TCTTGTTTTA
*
86286001 ATATTTG-TTT-TTATATTTTTAAAT
1 ATATTTGATTTATTATATTTTAAAAT
86286025 ATATTTGATTTATTATATTTTAAAAT
1 ATATTTGATTTATTATATTTTAAAAT
86286051 TTTTTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTAAAAT
Found at i:86287489 original size:16 final size:16
Alignment explanation
Indices: 86287465--86287498 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
86287455 TGGCACATTG
86287465 TGTAACACCCCTTACC
1 TGTAACACCCCTTACC
*
86287481 TGTAGCACCCCTTACC
1 TGTAACACCCCTTACC
86287497 TG
1 TG
86287499 GCCCAGACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.41, G:0.12, T:0.26
Consensus pattern (16 bp):
TGTAACACCCCTTACC
Found at i:86288429 original size:27 final size:26
Alignment explanation
Indices: 86288389--86288609 Score: 280
Period size: 27 Copynumber: 8.2 Consensus size: 26
86288379 CAGCATGGCT
* *
86288389 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
*
86288415 ACCAGATATAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
86288443 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
*
86288470 ACCAGATCAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATAAT-GTGGCAGAGCC
86288497 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* * *
86288524 ACCAGATCAGTTAATCGTGGTAGAGCC
1 ACCAGAACAGATAAT-GTGGCAGAGCC
86288551 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* * *
86288578 ACCAGATCAGATATTTGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
86288605 ACCAG
1 ACCAG
86288610 GACGCTTCCT
Statistics
Matches: 173, Mismatches: 15, Indels: 13
0.86 0.07 0.06
Matches are distributed among these distances:
26 10 0.06
27 142 0.82
28 21 0.12
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:86288452 original size:54 final size:54
Alignment explanation
Indices: 86288389--86288609 Score: 354
Period size: 54 Copynumber: 4.1 Consensus size: 54
86288379 CAGCATGGCT
* * *
86288389 ACCAGAACAGATA-ATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCC
86288443 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
* *
86288497 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGTTAATCGTGGTAGAGCC
1 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
* * *
86288551 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCC
1 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
86288605 ACCAG
1 ACCAG
86288610 GACGCTTCCT
Statistics
Matches: 156, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
54 138 0.88
55 18 0.12
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (54 bp):
ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
Found at i:86289293 original size:26 final size:26
Alignment explanation
Indices: 86289264--86289423 Score: 293
Period size: 26 Copynumber: 6.2 Consensus size: 26
86289254 TACAAAAGAC
*
86289264 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86289290 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86289316 ATCATGGAACATTTGCCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86289342 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86289368 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86289394 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86289420 ATCA
1 ATCA
86289424 ATTTGTATCA
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 129 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86293176 original size:40 final size:40
Alignment explanation
Indices: 86293024--86293169 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
86293014 TTGAATGATG
* * * * *
86293024 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
*
86293064 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86293104 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
86293145 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86293170 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.87
41 11 0.12
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86293176 original size:80 final size:79
Alignment explanation
Indices: 86293031--86293202 Score: 188
Period size: 80 Copynumber: 2.2 Consensus size: 79
86293021 ATGTCCGAGC
* * **
86293031 TAAGTCCCGAAGGCTTTGTGCTAGGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCGAGGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
86293096 TTA-CTAAATCCGGGT
66 -TAGCTAAATCC-GGT
* * * *
86293111 TAAGTCCCGAAGGCATTTGTGCGA-GTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGAACG
1 TAAGTCCCGAAGGC-TTTGTGCGAGGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTGAACG
*
86293174 AGTAGCTATATCCGGT
64 AGTAGCTAAATCCGGT
* *
86293190 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
86293203 TACGTGATTT
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
79 17 0.22
80 53 0.68
81 8 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCTTTGTGCGAGGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:86297876 original size:54 final size:54
Alignment explanation
Indices: 86297817--86298036 Score: 316
Period size: 54 Copynumber: 4.1 Consensus size: 54
86297807 AGCATGGCTG
** * * *
86297817 CCAGAACAGATA-ATGTAACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGTAGAGCCA
*
86297871 CCAGAACAGATATATGTGGTAGAGCCACCAGATCAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGTAGAGCCA
86297925 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGTAGAGCCA
* * * * * *
86297979 CCAGAACAGATATTTGTGGGAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGTAGAGCCA
86298033 CCAG
1 CCAG
86298037 GACGCTTCCT
Statistics
Matches: 152, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
54 136 0.89
55 16 0.11
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGTAGAGCCA
Found at i:86297881 original size:27 final size:26
Alignment explanation
Indices: 86297817--86298036 Score: 242
Period size: 27 Copynumber: 8.2 Consensus size: 26
86297807 AGCATGGCTG
** *
86297817 CCAGAACAGATAATGTAACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
86297843 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
86297871 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
86297898 CCAGATCAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
86297925 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
86297952 CCAGATCAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
* *
86297979 CCAGAACAGATATTTGTGGGAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
86298006 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
86298033 CCAG
1 CCAG
86298037 GACGCTTCCT
Statistics
Matches: 170, Mismatches: 17, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
26 9 0.05
27 142 0.84
28 19 0.11
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:86298733 original size:26 final size:26
Alignment explanation
Indices: 86298703--86298784 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
86298693 TGAAATTCCC
86298703 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86298729 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86298755 ATCATGGAACATTTACTTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86298781 ATCA
1 ATCA
86298785 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86301752 original size:20 final size:21
Alignment explanation
Indices: 86301701--86301755 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
86301691 AAGCAAAATA
86301701 GAATAATAAAAATAATATGAT
1 GAATAATAAAAATAATATGAT
*
86301722 GGATAAT-AAAATAATAT-AT
1 GAATAATAAAAATAATATGAT
86301741 -AACTAATAAAAATAA
1 GAA-TAATAAAAATAA
86301756 ATAATATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 1 0.03
19 6 0.20
20 17 0.57
21 6 0.20
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (21 bp):
GAATAATAAAAATAATATGAT
Done.