Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 255 of 362
Found at i:86301761 original size:24 final size:25
Alignment explanation
Indices: 86301730--86301793 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 25
86301720 ATGGATAATA
86301730 AAATAATATATAA-CTAATAAAAAT
1 AAATAATATATAAGCTAATAAAAAT
* * *
86301754 AAATAATATATAAGGTATTTAAAAT
1 AAATAATATATAAGCTAATAAAAAT
86301779 AAATTAAATATATAA
1 AAA-T-AATATATAA
86301794 AAAGGATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 13 0.38
25 11 0.32
26 1 0.03
27 9 0.26
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (25 bp):
AAATAATATATAAGCTAATAAAAAT
Found at i:86303387 original size:44 final size:44
Alignment explanation
Indices: 86303337--86303466 Score: 152
Period size: 44 Copynumber: 3.0 Consensus size: 44
86303327 GCCATGTTGA
* *
86303337 TATCTTCGATTTGCTCTCTGACAATACAAAGATGCCAAATCTAC
1 TATCTTCGATATGCTCTCTGACAATACAGAGATGCCAAATCTAC
* * * * **
86303381 TATCTTCGATCTGCTATCTGACAATACAGAGACGCTAAATCTGT
1 TATCTTCGATATGCTCTCTGACAATACAGAGATGCCAAATCTAC
* * * *
86303425 TGTCTTCGGTATGTTCTCTGATAATACAGAGATGCCAAATCT
1 TATCTTCGATATGCTCTCTGACAATACAGAGATGCCAAATCT
86303467 TGGATCTGTT
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (44 bp):
TATCTTCGATATGCTCTCTGACAATACAGAGATGCCAAATCTAC
Found at i:86303698 original size:44 final size:44
Alignment explanation
Indices: 86303590--86303816 Score: 285
Period size: 44 Copynumber: 5.1 Consensus size: 44
86303580 CGAAGGTTAG
* * ***
86303590 ATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAA
1 ATCTGCTA--TCTTCGATCTGCTCTCTGAC-AATACAAAGATGCCAA
* * * *
86303637 ATCTGTTATCTTCGATCTGCTCTTTGACAATACAAAGACGTCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAAAGATGCCAA
*
86303681 ATCTGCTATCTTTGATCTGCT-TCTTGACAATACAAAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCTC-TGACAATACAAAGATGCCAA
* *
86303725 ATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAAAGATGCCAA
* *
86303769 ATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAAAGATGCCAA
86303813 ATCT
1 ATCT
86303817 TGGATCTGCT
Statistics
Matches: 159, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
43 1 0.01
44 132 0.83
45 19 0.12
47 7 0.04
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGCTCTCTGACAATACAAAGATGCCAA
Found at i:86303996 original size:350 final size:350
Alignment explanation
Indices: 86303337--86304077 Score: 1187
Period size: 350 Copynumber: 2.1 Consensus size: 350
86303327 GCCATGTTGA
* *
86303337 TATCTTCGATTTGC-TCTCTGACAATACAAAGATGCCAAATCTACTATCTTCGATCTGCTATCTG
1 TATCTTTGATCTGCTTCT-TGACAATACAAAGATGCCAAATCTACTATCTTCGATCTGCTATCTG
* * * * *
86303401 ACAATACAGAGACGCTAAATCTGTTGTCTTCGGTATGTTCTCTGATAATACAGAGATGCCAAATC
65 ACAATACAGAGACGCCAAATCTGCTGTCTTCGATATGCTCTCTGACAATACAGAGATGCCAAATC
* * * * *
86303466 TTGGATCTGTTTCAGCGTGAACACGTGAAAGCCAAATCAGCTATGTCTTTGATCTGCTCCTTGTA
130 TTGGATCTGCTTCAGCATAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATCTACTCCTTGTA
* *
86303531 AACGCAAGGATGCTAAATCATCTTGGATCTACTTCGATGTGAAAATATCCGAAGGTTAGATCTGC
195 AACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAATATCCAAAGGTTAGATCTGC
* *
86303596 TATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTATCTTCGATCTGCTCTT
260 TATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTATCTTCGATCTGCTCTC
*
86303661 TGACAATACAAAGACGTCAAATCTGC
325 TGACAATACAAAGACGCCAAATCTGC
*
86303687 TATCTTTGATCTGCTTCTTGACAATACAAAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGA
1 TATCTTTGATCTGCTTCTTGACAATACAAAGATGCCAAATCTACTATCTTCGATCTGCTATCTGA
* *
86303752 CAATACAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCT
66 CAATACAGAGACGCCAAATCTGCTGTCTTCGATATGCTCTCTGACAATACAGAGATGCCAAATCT
*
86303817 TGGATCTGCTTCAGCATAAACACGTGAAAGCTAAATCAGCTATGTCTTCGATCTACTCCTTGTAA
131 TGGATCTGCTTCAGCATAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATCTACTCCTTGTAA
* *
86303882 ACGCAAGGATGCCAAATCATCTTGGATCTACTTTGATGTGAAAATATCTAAAGGTTAGATCTGCT
196 ACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAATATCCAAAGGTTAGATCTGCT
*
86303947 ATGTCTTCGATCTGCTCTCTGTCAAATATGGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCT
261 ATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCT
* *
86304012 GATAATACAGAGACGCCAAATCTGC
326 GACAATACAAAGACGCCAAATCTGC
* * * * *
86304037 TATCTTTGATCTGCTCCCTGATAATACAGAGACGCCAAATC
1 TATCTTTGATCTGCTTCTTGACAATACAAAGATGCCAAATC
86304078 ATCTTAGATC
Statistics
Matches: 359, Mismatches: 31, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
350 356 0.99
351 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (350 bp):
TATCTTTGATCTGCTTCTTGACAATACAAAGATGCCAAATCTACTATCTTCGATCTGCTATCTGA
CAATACAGAGACGCCAAATCTGCTGTCTTCGATATGCTCTCTGACAATACAGAGATGCCAAATCT
TGGATCTGCTTCAGCATAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATCTACTCCTTGTAA
ACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAATATCCAAAGGTTAGATCTGCT
ATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCT
GACAATACAAAGACGCCAAATCTGC
Found at i:86304048 original size:44 final size:44
Alignment explanation
Indices: 86303940--86304077 Score: 179
Period size: 44 Copynumber: 3.1 Consensus size: 44
86303930 TAAAGGTTAG
** *
86303940 ATCTGCTATGTCTTCGATCTGCTCTCTG-TCAAATATGGAGATGCCAA
1 ATCTGCTA--TCTTCGATCTGCTCTCTGAT--AATACAGAGACGCCAA
*
86303987 ATCTGTTATCTTCGATCTGCTCTCTGATAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGATAATACAGAGACGCCAA
* *
86304031 ATCTGCTATCTTTGATCTGCTCCCTGATAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGATAATACAGAGACGCCAA
86304075 ATC
1 ATC
86304078 ATCTTAGATC
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
44 57 0.69
45 18 0.22
46 1 0.01
47 7 0.08
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGCTCTCTGATAATACAGAGACGCCAA
Found at i:86316017 original size:12 final size:13
Alignment explanation
Indices: 86316001--86316038 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
86315991 AAGTAATGCA
86316001 AGGTATAATATAT
1 AGGTATAATATAT
*
86316014 -GGTAAAATATAT
1 AGGTATAATATAT
86316026 AGTGTATAATATA
1 AG-GTATAATATA
86316039 ATTTGTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 11 0.52
13 1 0.05
14 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (13 bp):
AGGTATAATATAT
Found at i:86316095 original size:21 final size:19
Alignment explanation
Indices: 86316049--86316106 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 19
86316039 ATTTGTAAAC
*
86316049 AAAATATATAATAATATGA
1 AAAATATATAATAATATAA
**
86316068 ATCATATGATAAGTAATATAA
1 AAAATAT-ATAA-TAATATAA
86316089 AAAATATAATAA-AATATA
1 AAAATAT-ATAATAATATA
86316107 TATAATGTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
19 11 0.35
20 4 0.13
21 16 0.52
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (19 bp):
AAAATATATAATAATATAA
Found at i:86316311 original size:22 final size:23
Alignment explanation
Indices: 86316251--86316311 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 23
86316241 TTTTTTAAAA
86316251 AATAAAATTTATACAATTAAATAAT
1 AATAAAATTTA-ACAA-TAAATAAT
86316276 AATACATAATTTAA-AA-AAATATAT
1 AATA-A-AATTTAACAATAAATA-AT
86316300 AATAAAATTTAA
1 AATAAAATTTAA
86316312 TTTATAAGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
22 7 0.21
23 6 0.18
24 6 0.18
25 6 0.18
26 2 0.06
27 6 0.18
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (23 bp):
AATAAAATTTAACAATAAATAAT
Found at i:86316378 original size:20 final size:21
Alignment explanation
Indices: 86316327--86316381 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
86316317 AAGCAAAATA
86316327 GAATAATAAAAATAATATGAT
1 GAATAATAAAAATAATATGAT
*
86316348 GGATAAT-AAAATAATAT-AT
1 GAATAATAAAAATAATATGAT
86316367 -AACTAATAAAAATAA
1 GAA-TAATAAAAATAA
86316382 ATAATATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 1 0.03
19 6 0.20
20 17 0.57
21 6 0.20
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (21 bp):
GAATAATAAAAATAATATGAT
Found at i:86316387 original size:24 final size:25
Alignment explanation
Indices: 86316356--86316419 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 25
86316346 ATGGATAATA
86316356 AAATAATATATAA-CTAATAAAAAT
1 AAATAATATATAAGCTAATAAAAAT
* * *
86316380 AAATAATATATAAGGTATTTAAAAT
1 AAATAATATATAAGCTAATAAAAAT
86316405 AAATTAAATATATAA
1 AAA-T-AATATATAA
86316420 AAAGGATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 13 0.38
25 11 0.32
26 1 0.03
27 9 0.26
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (25 bp):
AAATAATATATAAGCTAATAAAAAT
Found at i:86317871 original size:42 final size:41
Alignment explanation
Indices: 86317809--86317983 Score: 163
Period size: 42 Copynumber: 4.0 Consensus size: 41
86317799 TTCATTTTCT
* * * *
86317809 TGATGCCATAG-CTCAACTATGGTATTACACATCTTTACATA
1 TGATGCCATAGCCT-AGCTATGGTCTTACACATATTCACATA
*
86317850 GTGATGCCATAGCCTAGCTATGGTCTCACACATATTCACATA
1 -TGATGCCATAGCCTAGCTATGGTCTTACACATATTCACATA
*
86317892 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 T-GATGCCATAGCCTAGCTATGGTCTTACAC---AT---AT-TCACATA
* * *
86317941 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATA
1 T-GATGCCATAGCCTAGCTATGGTCTTACACATATTCACATA
86317983 T
1 T
86317984 CTCACTGATG
Statistics
Matches: 115, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
41 1 0.01
42 68 0.59
43 3 0.03
45 2 0.02
46 1 0.01
48 2 0.02
49 38 0.33
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (41 bp):
TGATGCCATAGCCTAGCTATGGTCTTACACATATTCACATA
Found at i:86317940 original size:49 final size:49
Alignment explanation
Indices: 86317878--86317984 Score: 205
Period size: 49 Copynumber: 2.2 Consensus size: 49
86317868 TATGGTCTCA
86317878 CACATATTCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
86317928 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
86317977 CACATATC
1 CACATATC
86317985 TCACTGATGC
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 51 0.89
50 6 0.11
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
Found at i:86318658 original size:14 final size:13
Alignment explanation
Indices: 86318635--86318666 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
86318625 GGAATATCAA
86318635 AACAATAATTAAG
1 AACAATAATTAAG
86318648 AACACATAATTAAG
1 AACA-ATAATTAAG
86318662 AACAA
1 AACAA
86318667 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:86321524 original size:396 final size:396
Alignment explanation
Indices: 86320792--86321981 Score: 2335
Period size: 396 Copynumber: 3.0 Consensus size: 396
86320782 GATAATAATC
*
86320792 GGCTTAGGGGTGGAGGAGGATACTCCAGCGATGGTAGAGGTTCATTAGTCCATAAGTCCTGCGCC
1 GGCTTAGGGGTGGAGGAGGATACTCCAGCGGTGGTAGAGGTTCATTAGTCCATAAGTCCTGCGCC
86320857 AAAAGAATATTATATTTGAAGTTGGTTATGGTCGTGGTCGAGTAGGACATGGCAGTCGTGGAGAA
66 AAAAGAATATTATATTTGAAGTTGGTTATGGTCGTGGTCGAGTAGGACATGGCAGTCGTGGAGAA
86320922 CCTTTCCCAGTGGAGTTTCGAGTCCCTGAGTAATAGTGAGCTTTGGAGCTCTTTATAACTGTGAT
131 CCTTTCCCAGTGGAGTTTCGAGTCCCTGAGTAATAGTGAGCTTTGGAGCTCTTTATAACTGTGAT
86320987 AGAATCAGGAGCTCTTTTAGGAAATATATAAGGAAGGGTAAGTACTCAATATGAATTAGCCAAAA
196 AGAATCAGGAGCTCTTTTAGGAAATATATAAGGAAGGGTAAGTACTCAATATGAATTAGCCAAAA
86321052 TTAAAAATTGTAAAATAATAATTATAAGTCCTAATAAAAATAAGGTGAAAGAAAAATAAAAAGTA
261 TTAAAAATTGTAAAATAATAATTATAAGTCCTAATAAAAATAAGGTGAAAGAAAAATAAAAAGTA
86321117 GTCTTAAAATAAAATAAAAGTAAAAACATAAAATAATAAATAAAAGTTTTTAAACATCTTCATCG
326 GTCTTAAAATAAAATAAAAGTAAAAACATAAAATAATAAATAAAAGTTTTTAAACATCTTCATCG
86321182 CTAAAT
391 CTAAAT
86321188 GGCTTAGGGGTGGAGGAGGATACTCCAGCGGTGGTAGAGGTTCATTAGTCCATAAGTCCTGCGCC
1 GGCTTAGGGGTGGAGGAGGATACTCCAGCGGTGGTAGAGGTTCATTAGTCCATAAGTCCTGCGCC
86321253 AAAAGAATATTATATTTGAAGTTGGTTATGGTCGTGGTCGAGTAGGACATGGCAGTCGTGGAGAA
66 AAAAGAATATTATATTTGAAGTTGGTTATGGTCGTGGTCGAGTAGGACATGGCAGTCGTGGAGAA
86321318 CCTTTCCCAGTGGAGTTTCGAGTCCCTGAGTAATAGTGAGCTTTGGAGCTCTTTATAACTGTGAT
131 CCTTTCCCAGTGGAGTTTCGAGTCCCTGAGTAATAGTGAGCTTTGGAGCTCTTTATAACTGTGAT
* *
86321383 AGAATTAGGAGCTCTTTTAGGAAATATATAAGGAAGGGTAAGTACTTAATATGAATTAGCCAAAA
196 AGAATCAGGAGCTCTTTTAGGAAATATATAAGGAAGGGTAAGTACTCAATATGAATTAGCCAAAA
86321448 TTAAAAATTGTAAAATAATAATTATAAGTCCTAATAAAAATAAGGTGAAAGAAAAATAAAAAGTA
261 TTAAAAATTGTAAAATAATAATTATAAGTCCTAATAAAAATAAGGTGAAAGAAAAATAAAAAGTA
86321513 GTCTTAAAATAAAATAAAAGTAAAAACATAAAATAATAAATAAAAGTTTTTAAACATCTTCATCG
326 GTCTTAAAATAAAATAAAAGTAAAAACATAAAATAATAAATAAAAGTTTTTAAACATCTTCATCG
86321578 CTAAAT
391 CTAAAT
86321584 GGCTTAGGGGTGGAGGAGGATACTCCAGCGGTGGTAGAGGTTCATTAGTCCATAAGTCCTGCGCC
1 GGCTTAGGGGTGGAGGAGGATACTCCAGCGGTGGTAGAGGTTCATTAGTCCATAAGTCCTGCGCC
86321649 AAAAGAATATTATATTTGAAGTTGGTTATGGTCGTGGTCGAGTAGGACATGGCAGTCGTGGAGAA
66 AAAAGAATATTATATTTGAAGTTGGTTATGGTCGTGGTCGAGTAGGACATGGCAGTCGTGGAGAA
*
86321714 CCTTTCTCAGTGGAGTTTCGAGTCCCTGAGTAATAGTGAGCTTTGGAGCTCTTTATAACTGTGAT
131 CCTTTCCCAGTGGAGTTTCGAGTCCCTGAGTAATAGTGAGCTTTGGAGCTCTTTATAACTGTGAT
86321779 AGAATCAGGAGCTCTTTTAGGAAATATATAAGGAAGGGTAAGTACTCAATATGAATTAGCCAAAA
196 AGAATCAGGAGCTCTTTTAGGAAATATATAAGGAAGGGTAAGTACTCAATATGAATTAGCCAAAA
86321844 TTAAAAATTGTAAAATAATAATTATAAGTCCTAATAAAAATAAGGTGAAAGAAAAATAAAAAGTA
261 TTAAAAATTGTAAAATAATAATTATAAGTCCTAATAAAAATAAGGTGAAAGAAAAATAAAAAGTA
*
86321909 GTCTTAAAATAAAATAAAAGTAAAAACATAAAATAATAAATAAAAGTTTTTAAACATCTTCATCA
326 GTCTTAAAATAAAATAAAAGTAAAAACATAAAATAATAAATAAAAGTTTTTAAACATCTTCATCG
86321974 CTAAAT
391 CTAAAT
86321980 GG
1 GG
86321982 TTGGCAAGGT
Statistics
Matches: 787, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
396 787 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (396 bp):
GGCTTAGGGGTGGAGGAGGATACTCCAGCGGTGGTAGAGGTTCATTAGTCCATAAGTCCTGCGCC
AAAAGAATATTATATTTGAAGTTGGTTATGGTCGTGGTCGAGTAGGACATGGCAGTCGTGGAGAA
CCTTTCCCAGTGGAGTTTCGAGTCCCTGAGTAATAGTGAGCTTTGGAGCTCTTTATAACTGTGAT
AGAATCAGGAGCTCTTTTAGGAAATATATAAGGAAGGGTAAGTACTCAATATGAATTAGCCAAAA
TTAAAAATTGTAAAATAATAATTATAAGTCCTAATAAAAATAAGGTGAAAGAAAAATAAAAAGTA
GTCTTAAAATAAAATAAAAGTAAAAACATAAAATAATAAATAAAAGTTTTTAAACATCTTCATCG
CTAAAT
Found at i:86327404 original size:53 final size:48
Alignment explanation
Indices: 86327291--86327436 Score: 168
Period size: 53 Copynumber: 2.9 Consensus size: 48
86327281 TGATTTATCA
* * *
86327291 ATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACA-CCG
1 ATGCCATATCCCAGATATGGTCTTATACGGAAGCACATATCACATCCG
*
86327338 ATGTCATATCCCAGATATGGTCTTATACGGAAGCACATAATCACATCTCTCCG
1 ATGCCATATCCCAGATATGGTCTTATACGGAAGCACAT-ATCACA----TCCG
* * *
86327391 ATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATATCACAT
1 ATGCCATATCCCAGATATGGTCTTATACGG-AAGCACATATCACAT
86327437 GTTGCCATGG
Statistics
Matches: 84, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
47 34 0.40
48 6 0.07
49 1 0.01
53 36 0.43
54 7 0.08
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTATACGGAAGCACATATCACATCCG
Found at i:86341020 original size:27 final size:28
Alignment explanation
Indices: 86340972--86341080 Score: 130
Period size: 28 Copynumber: 3.9 Consensus size: 28
86340962 AATTTTGGTT
* *
86340972 CAAAAATGTAAATTTTGAAAAATAGGGG
1 CAAAACTGTAAAATTTGAAAAATAGGGG
* *
86341000 CAAAACTGTAAAATATGAAAAATAAGGG
1 CAAAACTGTAAAATTTGAAAAATAGGGG
*
86341028 -AAAATTGTAAAATTTGAAAAAATAGGGG
1 CAAAACTGTAAAATTTG-AAAAATAGGGG
* * *
86341056 CAAAACTATAAAATCTAAAAAATAG
1 CAAAACTGTAAAATTTGAAAAATAG
86341081 AGGATACATG
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
27 14 0.21
28 42 0.62
29 12 0.18
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.22
Consensus pattern (28 bp):
CAAAACTGTAAAATTTGAAAAATAGGGG
Found at i:86341053 original size:56 final size:55
Alignment explanation
Indices: 86340973--86341079 Score: 160
Period size: 56 Copynumber: 1.9 Consensus size: 55
86340963 ATTTTGGTTC
* * *
86340973 AAAAATGTAAATTTTGAAAAATAGGGGCAAAACTGTAAAATATGAAAAATAAGGG
1 AAAAATGTAAAATTTGAAAAATAGGGGCAAAACTATAAAATATAAAAAATAAGGG
* *
86341028 AAAATTGTAAAATTTGAAAAAATAGGGGCAAAACTATAAAATCTAAAAAATA
1 AAAAATGTAAAATTTG-AAAAATAGGGGCAAAACTATAAAATATAAAAAATA
86341080 GAGGATACAT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
55 14 0.30
56 32 0.70
ACGTcount: A:0.57, C:0.05, G:0.16, T:0.22
Consensus pattern (55 bp):
AAAAATGTAAAATTTGAAAAATAGGGGCAAAACTATAAAATATAAAAAATAAGGG
Found at i:86345667 original size:29 final size:28
Alignment explanation
Indices: 86345635--86345951 Score: 262
Period size: 29 Copynumber: 11.0 Consensus size: 28
86345625 GGCTATTGAT
86345635 TATGAAAAGGGATGGTGACGACCATCAA
1 TATGAAAAGGGATGGTGACGACCATCAA
86345663 CTATGAAAAGGGATGGTGACGACCATCGAA
1 -TATGAAAAGGGATGGTGACGACCATC-AA
* * * *
86345693 TATTAAAAGGGATAGCT-TCAACCATCAA
1 TATGAAAAGGGAT-GGTGACGACCATCAA
86345721 TTATGAAAAGGGATGGTGACGACCATCAA
1 -TATGAAAAGGGATGGTGACGACCATCAA
86345750 CTATGAAAAGGGATGGTGACGACCATCGAA
1 -TATGAAAAGGGATGGTGACGACCATC-AA
* * * * ** *
86345780 TGTAAAAAAGGAT-ATCTTCGACTATCGAA
1 TATGAAAAGGGATGGT-GACGACCATC-AA
* * * * * *
86345809 TATGAAAAAGGATTGCT-TCGGCTATCAT
1 TATGAAAAGGGA-TGGTGACGACCATCAA
*
86345837 TAATGAAAAGGGATGGTAACGACCATCAA
1 T-ATGAAAAGGGATGGTGACGACCATCAA
*
86345866 CTATGAAAAGGGATGGTGACGATCATCAAA
1 -TATGAAAAGGGATGGTGACGACCATC-AA
* * * *
86345896 TATGAAAAGGGACGGTTACAAGCATCAAA
1 TATGAAAAGGGATGGTGACGACCATC-AA
* * *
86345925 TATGAAAAGGGACGGTTACAACCATCA
1 TATGAAAAGGGATGGTGACGACCATCA
86345952 TTTAGCACAC
Statistics
Matches: 242, Mismatches: 34, Indels: 25
0.80 0.11 0.08
Matches are distributed among these distances:
28 11 0.05
29 220 0.91
30 10 0.04
31 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (28 bp):
TATGAAAAGGGATGGTGACGACCATCAA
Found at i:86345756 original size:87 final size:87
Alignment explanation
Indices: 86345610--86345950 Score: 323
Period size: 87 Copynumber: 3.9 Consensus size: 87
86345600 TCGATGAGTG
* * * **
86345610 AAAAGGGATAGCTTTGGCTATTGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGG
1 AAAAGGGATAGCTTCGACCATCAATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGG
*
86345675 ATGGTGACGACCATCGAATATT
66 ATGGTGACGACCATCGAATATA
*
86345697 AAAAGGGATAGCTTCAACCATCAATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGG
1 AAAAGGGATAGCTTCGACCATCAATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGG
*
86345762 ATGGTGACGACCATCGAATGTA
66 ATGGTGACGACCATCGAATATA
* * * * * * * * *
86345784 AAAAAGGATATCTTCGACTATCGAA-TATGAAAAAGGATTGCT-TCGGCTATC-ATTAATGAAAA
1 AAAAGGGATAGCTTCGACCATC-AATTATGAAAAGGGA-TGGTGACGACCATCAACT-ATGAAAA
* *
86345846 GGGATGGTAACGACCATC-AACTATG
63 GGGATGGTGACGACCATCGAA-TATA
* * * * * * * * *
86345871 AAAAGGGAT-GGTGACGATCATCAAATATGAAAAGGGACGGTTACAAGCATCAAATATGAAAAGG
1 AAAAGGGATAGCT-TCGACCATCAATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGG
* * *
86345935 GACGGTTACAACCATC
65 GATGGTGACGACCATC
86345951 ATTTAGCACA
Statistics
Matches: 207, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
86 9 0.04
87 191 0.92
88 7 0.03
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22
Consensus pattern (87 bp):
AAAAGGGATAGCTTCGACCATCAATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGG
ATGGTGACGACCATCGAATATA
Found at i:86345827 original size:116 final size:116
Alignment explanation
Indices: 86345635--86345903 Score: 337
Period size: 116 Copynumber: 2.3 Consensus size: 116
86345625 GGCTATTGAT
* * * *
86345635 TATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACGACCATCGAATATTAAA
1 TATGAAAAGGGATGGTGACGACCATCAACTATAAAAAAGGATGATGACGACCATCGAATATGAAA
* *
86345700 AGGGATAGCTTCAACCATCAATT-ATGAAAAGGGATGGTGACGACCATCAAC
66 AAGGATAGCTTCAACCATC-ATTAATGAAAAGGGATGGTAACGACCATCAAC
* ** *
86345751 TATGAAAAGGGATGGTGACGACCATCGAA-TGTAAAAAAGGAT-ATCTTCGACTATCGAATATGA
1 TATGAAAAGGGATGGTGACGACCATC-AACTATAAAAAAGGATGAT-GACGACCATCGAATATGA
* ** *
86345814 AAAAGGATTGCTTCGGCTATCATTAATGAAAAGGGATGGTAACGACCATCAAC
64 AAAAGGATAGCTTCAACCATCATTAATGAAAAGGGATGGTAACGACCATCAAC
* * *
86345867 TATGAAAAGGGATGGTGACGATCATCAAATATGAAAA
1 TATGAAAAGGGATGGTGACGACCATCAACTATAAAAA
86345904 GGGACGGTTA
Statistics
Matches: 132, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
115 6 0.05
116 124 0.94
117 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (116 bp):
TATGAAAAGGGATGGTGACGACCATCAACTATAAAAAAGGATGATGACGACCATCGAATATGAAA
AAGGATAGCTTCAACCATCATTAATGAAAAGGGATGGTAACGACCATCAAC
Found at i:86349960 original size:38 final size:38
Alignment explanation
Indices: 86349917--86349998 Score: 139
Period size: 38 Copynumber: 2.2 Consensus size: 38
86349907 ACATTGATTG
86349917 AATTTTCT-ATAAGTGATATTGTGACTTGAATGTTTTAA
1 AATTTT-TAATAAGTGATATTGTGACTTGAATGTTTTAA
*
86349955 AATTTTTAATAAGTGATGTTGTGACTTGAATGTTTTAA
1 AATTTTTAATAAGTGATATTGTGACTTGAATGTTTTAA
86349993 AATTTT
1 AATTTT
86349999 GAACATTTTG
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
37 1 0.02
38 41 0.98
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.49
Consensus pattern (38 bp):
AATTTTTAATAAGTGATATTGTGACTTGAATGTTTTAA
Found at i:86352147 original size:29 final size:29
Alignment explanation
Indices: 86352104--86352185 Score: 112
Period size: 29 Copynumber: 2.8 Consensus size: 29
86352094 TGGATAGCTT
* *
86352104 CGACTATCGATTATGAAAAGGGATGGTGA
1 CGACCATCGAATATGAAAAGGGATGGTGA
*
86352133 TGACCATC-AACTATGAAAAGGGATGGTGA
1 CGACCATCGAA-TATGAAAAGGGATGGTGA
*
86352162 CGACCATCGAATATTAAAAGGGAT
1 CGACCATCGAATATGAAAAGGGAT
86352186 ATCTTCGGCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
28 1 0.02
29 43 0.93
30 2 0.04
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (29 bp):
CGACCATCGAATATGAAAAGGGATGGTGA
Found at i:86352199 original size:29 final size:29
Alignment explanation
Indices: 86352167--86352244 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 29
86352157 GGTGACGACC
*
86352167 ATCGAATATTAAAAGGGATATCTTCGGCT
1 ATCGAATATTAAAAGGGATAGCTTCGGCT
* *
86352196 ATCGAATATTAAAACGGATAGCTTTGGCT
1 ATCGAATATTAAAAGGGATAGCTTCGGCT
*
86352225 ATC-AATTAATGAAAAGGGAT
1 ATCGAA-T-ATTAAAAGGGAT
86352245 GTTGACGACC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 2 0.05
29 30 0.71
30 10 0.24
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (29 bp):
ATCGAATATTAAAAGGGATAGCTTCGGCT
Found at i:86358734 original size:14 final size:13
Alignment explanation
Indices: 86358687--86358734 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 13
86358677 GTGTTGATCC
86358687 AAATTAA-TATATT
1 AAATTAACTA-ATT
86358700 -AATTAAACTAATT
1 AAATT-AACTAATT
86358713 AAATTAACTAACTT
1 AAATTAACTAA-TT
86358727 AAATTAAC
1 AAATTAAC
86358735 CTACTAGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
12 4 0.13
13 11 0.35
14 16 0.52
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATTAACTAATT
Found at i:86360600 original size:13 final size:13
Alignment explanation
Indices: 86360582--86360609 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
86360572 ACATATTATA
86360582 AATATTTTGTGTT
1 AATATTTTGTGTT
86360595 AATATTTTGTGTT
1 AATATTTTGTGTT
86360608 AA
1 AA
86360610 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:86362079 original size:40 final size:40
Alignment explanation
Indices: 86362031--86362276 Score: 415
Period size: 40 Copynumber: 6.2 Consensus size: 40
86362021 GGACTAAGAT
86362031 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
86362071 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGCC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
86362111 CCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
86362151 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
86362191 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
86362231 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
86362270 CCGAAGG
1 CCGAAGG
86362277 TACTTGGGTT
Statistics
Matches: 195, Mismatches: 9, Indels: 5
0.93 0.04 0.02
Matches are distributed among these distances:
39 16 0.08
40 179 0.92
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:86362228 original size:120 final size:120
Alignment explanation
Indices: 86362015--86362276 Score: 465
Period size: 120 Copynumber: 2.2 Consensus size: 120
86362005 TATTCGGATG
86362015 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
86362080 TTTGTGCTAGTTACTATATCCGGGCTAAGCCCCGAAGGCATTTGTGCTAGTTACT
66 TTTGTGCTAGTTACTATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
86362135 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* *
86362200 TTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
66 TTTGTGCTAGTTACTATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
*
86362255 ATATCCGG-CTAA-ATCCCGAAGG
1 ATAACCGGACTAAGAT-CCGAAGG
86362277 TACTTGGGTT
Statistics
Matches: 137, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
118 2 0.01
119 11 0.08
120 124 0.91
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (120 bp):
ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTTACTATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
Found at i:86368791 original size:13 final size:13
Alignment explanation
Indices: 86368773--86368800 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
86368763 ACATATTATA
86368773 AATATTTTGTGTT
1 AATATTTTGTGTT
86368786 AATATTTTGTGTT
1 AATATTTTGTGTT
86368799 AA
1 AA
86368801 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:86370272 original size:40 final size:40
Alignment explanation
Indices: 86370220--86370425 Score: 283
Period size: 40 Copynumber: 5.2 Consensus size: 40
86370210 GGACTAAGAT
86370220 CCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTC
*
86370260 CCGAAGGTATTTGTGCTAGTTACTATATCC-GAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCAG-GCTAAGTC
* *
86370300 CCGAAGGCATTTGTGCTAGTTACTATAACCAGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAG-TC
*
86370340 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTC
* * ** *
86370380 CCGAAGACATTTGTGCGAGTTGTTATATCCA-GCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTC
*
86370419 CTGAAGG
1 CCGAAGG
86370426 TACTTGGGTT
Statistics
Matches: 147, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 14 0.10
40 131 0.89
41 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTC
Found at i:86372253 original size:39 final size:39
Alignment explanation
Indices: 86372194--86372269 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
86372184 TGTTTTTGAG
* * *
86372194 TATTGTGATATATGCCTAAATGTTATGTGGTTATATGAC
1 TATTGTGATAGATACCTAAATGTTATGTGATTATATGAC
*
86372233 TATTGTGATAGATACTTAAATGTTATGTGATTATATG
1 TATTGTGATAGATACCTAAATGTTATGTGATTATATG
86372270 TGTAATGTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (39 bp):
TATTGTGATAGATACCTAAATGTTATGTGATTATATGAC
Found at i:86372291 original size:39 final size:39
Alignment explanation
Indices: 86372197--86372291 Score: 111
Period size: 39 Copynumber: 2.4 Consensus size: 39
86372187 TTTTGAGTAT
** * *
86372197 TGTGATATATGCCTAAATGTTATGTGGTTATATGACTAT
1 TGTGATATATGATTAAATGTTATGTGATTATATGACTAA
* **
86372236 TGTGATAGAT-ACTTAAATGTTATGTGATTATATGTGTAA
1 TGTGATATATGA-TTAAATGTTATGTGATTATATGACTAA
86372275 TGTGATATATGATTAAA
1 TGTGATATATGATTAAA
86372292 ATTGAATATG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
39 45 0.98
40 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (39 bp):
TGTGATATATGATTAAATGTTATGTGATTATATGACTAA
Found at i:86379105 original size:17 final size:17
Alignment explanation
Indices: 86379083--86379116 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
86379073 ATTTCCTCTG
86379083 TTTGTTGTTTGCTGCAA
1 TTTGTTGTTTGCTGCAA
86379100 TTTGTTGTTTGCTGCAA
1 TTTGTTGTTTGCTGCAA
86379117 CTCTATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.53
Consensus pattern (17 bp):
TTTGTTGTTTGCTGCAA
Found at i:86381769 original size:22 final size:21
Alignment explanation
Indices: 86381744--86381802 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 21
86381734 CAACTCATGT
86381744 GAGCTTACTATTCAGCTCAATA
1 GAGCTTACT-TTCAGCTCAATA
*
86381766 GAGCTTACCGTTTTAGCTCAATA
1 GAGCTTA-C-TTTCAGCTCAATA
*
86381789 AAGCTTACTGTTCA
1 GAGCTTACT-TTCA
86381803 TCAGCTCAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.03
22 11 0.35
23 18 0.58
24 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (21 bp):
GAGCTTACTTTCAGCTCAATA
Found at i:86381787 original size:23 final size:24
Alignment explanation
Indices: 86381755--86381824 Score: 79
Period size: 23 Copynumber: 2.9 Consensus size: 24
86381745 AGCTTACTAT
86381755 TCAGCTCAATAGAGCTTACCGTT-
1 TCAGCTCAATAGAGCTTACCGTTA
* * *
86381778 TTAGCTCAATAAAGCTTACTGTTCA
1 TCAGCTCAATAGAGCTTACCGTT-A
*
86381803 TCAGCTCAAGAAGAGCTTACCG
1 TCAGCTCAA-TAGAGCTTACCG
86381825 ATCATGGTTC
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 20 0.54
25 8 0.22
26 9 0.24
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (24 bp):
TCAGCTCAATAGAGCTTACCGTTA
Found at i:86384501 original size:45 final size:45
Alignment explanation
Indices: 86384437--86384610 Score: 235
Period size: 45 Copynumber: 3.9 Consensus size: 45
86384427 TGTACAGTAC
*
86384437 TATTCGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGAAATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAT
* * *
86384482 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGTCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAT
* * *
86384527 TATTAGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAT
* * * *
86384572 TATTCAGGCC-TCGAGCCTAGCAGGCGA-AATGTCGGTGAA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
86384611 TGAATTCGGG
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 9 0.08
44 15 0.13
45 90 0.79
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAT
Found at i:86395732 original size:49 final size:49
Alignment explanation
Indices: 86395679--86396373 Score: 1117
Period size: 49 Copynumber: 14.3 Consensus size: 49
86395669 TACATGATAG
* *
86395679 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
86395728 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
86395777 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATA
86395830 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
86395879 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
86395930 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
86395977 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
86396026 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
86396075 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
86396126 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
86396173 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
86396220 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
86396267 TATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * * *
86396314 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
86396363 -A-ATGTGATAAG
1 TATATGTGATAAG
86396374 TCCCGAAGGG
Statistics
Matches: 615, Mismatches: 19, Indels: 26
0.93 0.03 0.04
Matches are distributed among these distances:
47 228 0.37
48 1 0.00
49 239 0.39
51 98 0.16
53 49 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:86396542 original size:37 final size:37
Alignment explanation
Indices: 86396492--86396629 Score: 222
Period size: 37 Copynumber: 3.7 Consensus size: 37
86396482 CCGAGCTCTA
*
86396492 AAGACCCGATGACTATGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
86396529 AAGACCCGATGACTACGTGTGGAGATTATTTCCAGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
86396566 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
86396603 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
86396630 TCGTCTCAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 93 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:86400857 original size:18 final size:18
Alignment explanation
Indices: 86400816--86400854 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
86400806 TGAAATGTTG
*
86400816 AAATTTTTCTAAGTTTCC
1 AAATTTTTCTAAGTTACC
*
86400834 AAATTTTTCATATGTTACC
1 AAATTTTTC-TAAGTTACC
86400853 AA
1 AA
86400855 TTTAGTCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.33, C:0.15, G:0.05, T:0.46
Consensus pattern (18 bp):
AAATTTTTCTAAGTTACC
Found at i:86408686 original size:49 final size:48
Alignment explanation
Indices: 86408614--86408742 Score: 163
Period size: 49 Copynumber: 2.7 Consensus size: 48
86408604 AAGGTGTAAT
86408614 GTCGATGCCATGTCCCAGACATGGTCATACACTAACTATCAAAATCGAG
1 GTCGATGCCATGTCCCAGACATGGTCATACACTAACT-TCAAAATCGAG
* * ** * **
86408663 GTCGAAGCCATGTCCCAGACATGGTCCTACACTGGCTTCCATCTCGAG
1 GTCGATGCCATGTCCCAGACATGGTCATACACTAACTTCAAAATCGAG
*
86408711 GTCGATG-CATGTCCCAGACAT-GTCTTACACTA
1 GTCGATGCCATGTCCCAGACATGGTCATACACTA
86408743 GCTCTCGTCT
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 9 0.13
47 14 0.20
48 14 0.20
49 33 0.47
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCATACACTAACTTCAAAATCGAG
Found at i:86408785 original size:46 final size:45
Alignment explanation
Indices: 86408671--86408836 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 45
86408661 AGGTCGAAGC
* * * * *
86408671 CATGTCCCAGACATGGTCCTACACTGGCT-TCCATCTCGAGGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-C-TCTCAATGCCGATG
86408718 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAATGCCGATG
* * * *
86408764 CCATGTCCCAGACATG-GTTACATTGGCTCTC-AT-AATGTGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAA--T-GCCGATG
86408810 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
86408837 GCACAAATGA
Statistics
Matches: 100, Mismatches: 13, Indels: 13
0.79 0.10 0.10
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 16 0.16
46 51 0.51
47 30 0.30
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAATGCCGATG
Found at i:86410989 original size:33 final size:33
Alignment explanation
Indices: 86410952--86411061 Score: 80
Period size: 33 Copynumber: 3.2 Consensus size: 33
86410942 AAAGATGTAC
86410952 AAGACCATGGTTGGACCATGGCAATGTTTACGT
1 AAGACCATGGTTGGACCATGGCAATGTTTACGT
* * * * * * *
86410985 AAGACCGTAGCG-AGG-CTATGGTAGTTTTTCAGACGC
1 AAGACCAT-G-GTTGGACCATGGCAATGTTT---ACGT
* *
86411021 AAGACCATGATTGGACCATGCCAATGTTTACGT
1 AAGACCATGGTTGGACCATGGCAATGTTTACGT
86411054 AAGACCAT
1 AAGACCAT
86411062 AGCAAGGCTA
Statistics
Matches: 54, Mismatches: 16, Indels: 14
0.64 0.19 0.17
Matches are distributed among these distances:
33 28 0.52
34 3 0.06
35 4 0.07
36 19 0.35
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (33 bp):
AAGACCATGGTTGGACCATGGCAATGTTTACGT
Found at i:86411038 original size:69 final size:69
Alignment explanation
Indices: 86410951--86411112 Score: 279
Period size: 69 Copynumber: 2.3 Consensus size: 69
86410941 TAAAGATGTA
* *
86410951 CAAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCGTAGCGAGGCTATGGTAGTTTTTCA
1 CAAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCA
86411016 GACG
66 GACG
* *
86411020 CAAGACCATGATTGGACCATGCCAATGTTTACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCA
1 CAAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCA
86411085 GACG
66 GACG
*
86411089 TAAGACCATGGTTGGACCATGGCA
1 CAAGACCATGGTTGGACCATGGCA
86411113 GTGTATACTA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 86 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (69 bp):
CAAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCA
GACG
Found at i:86411097 original size:36 final size:36
Alignment explanation
Indices: 86410981--86411097 Score: 100
Period size: 36 Copynumber: 3.3 Consensus size: 36
86410971 GGCAATGTTT
* *
86410981 ACGTAAGACCGTAGCGAGGCTATGGTAGTTTTTCAG
1 ACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCAG
* * * ** * *
86411017 ACGCAAGACCAT-G-ATTGGACCATGCCAATGTTT---
1 ACGTAAGACCATAGCA-AGG-CTATGGTAGTTTTTCAG
86411050 ACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCAG
1 ACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCAG
86411086 ACGTAAGACCAT
1 ACGTAAGACCAT
86411098 GGTTGGACCA
Statistics
Matches: 58, Mismatches: 16, Indels: 14
0.66 0.18 0.16
Matches are distributed among these distances:
33 20 0.34
34 3 0.05
35 4 0.07
36 31 0.53
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (36 bp):
ACGTAAGACCATAGCAAGGCTATGGTAGTTTTTCAG
Found at i:86422495 original size:39 final size:39
Alignment explanation
Indices: 86422441--86422520 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
86422431 AGATCCACGC
86422441 ACGAACTGCCTACAATTTTATTACTACCACATTAATCTA
1 ACGAACTGCCTACAATTTTATTACTACCACATTAATCTA
86422480 ACGAACTGCCTACAATTTTATTACTACCACATTAATCTA
1 ACGAACTGCCTACAATTTTATTACTACCACATTAATCTA
86422519 AC
1 AC
86422521 TATCAAAAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (39 bp):
ACGAACTGCCTACAATTTTATTACTACCACATTAATCTA
Found at i:86423404 original size:12 final size:12
Alignment explanation
Indices: 86423387--86423413 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86423377 AGTGAATGAG
86423387 CAACATAAAAAT
1 CAACATAAAAAT
86423399 CAACATAAAAAT
1 CAACATAAAAAT
86423411 CAA
1 CAA
86423414 TTGAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.19, G:0.00, T:0.15
Consensus pattern (12 bp):
CAACATAAAAAT
Found at i:86425684 original size:59 final size:59
Alignment explanation
Indices: 86425548--86425684 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 59
86425538 GTGTTAACTA
* *
86425548 GGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCCTT-GCCCATATCAGTATTAATCTGGGCCATAGACCCTTACAGT-ACAGAGTATACTG
* * *
86425609 GGCCTAGCCCATATCAGTATTAATCTGGGCCGTA-ACCCTATACAAGT-C-GAGATATATTG
1 GGCCTTGCCCATATCAGTATTAATCTGGGCCATAGACCCT-TAC-AGTACAGAG-TATACTG
86425668 GGCCTTGCCCATATCAG
1 GGCCTTGCCCATATCAG
86425685 CACAGTTGGG
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
58 3 0.04
59 27 0.40
60 29 0.43
61 8 0.12
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (59 bp):
GGCCTTGCCCATATCAGTATTAATCTGGGCCATAGACCCTTACAGTACAGAGTATACTG
Found at i:86427220 original size:18 final size:18
Alignment explanation
Indices: 86427177--86427223 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
86427167 AAGAAAATCG
86427177 AAAAAGA-AAG-GGTTAC
1 AAAAAGAGAAGAGGTTAC
*
86427193 AAAAATAGAAGAGGTTATC
1 AAAAAGAGAAGAGGTTA-C
86427212 -AAAAGAGAAGAG
1 AAAAAGAGAAGAG
86427224 ATTAAGATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 6 0.23
17 3 0.12
18 16 0.62
19 1 0.04
ACGTcount: A:0.57, C:0.04, G:0.26, T:0.13
Consensus pattern (18 bp):
AAAAAGAGAAGAGGTTAC
Found at i:86427395 original size:11 final size:11
Alignment explanation
Indices: 86427379--86427405 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
86427369 CCCAATTTAA
86427379 ATCTCGTGCCT
1 ATCTCGTGCCT
86427390 ATCTCGTGCCT
1 ATCTCGTGCCT
86427401 ATCTC
1 ATCTC
86427406 CTTGTGCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.11, C:0.37, G:0.15, T:0.37
Consensus pattern (11 bp):
ATCTCGTGCCT
Found at i:86428054 original size:64 final size:64
Alignment explanation
Indices: 86427929--86428214 Score: 281
Period size: 64 Copynumber: 4.4 Consensus size: 64
86427919 TAGTACGGGA
* *
86427929 TGTATACCATGT-GTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCATGGGTGATAC
1 TGTACACCATGTAG-ACAAGAGAGCTACGAG--A-TAT-ATGTAGCTAGGTCGCATGGGTGATAC
86427993 TATG
61 TATG
* *
86427997 TGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGTATGGGTGATACTATG
1 TGTACACCATGTAGACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACTATG
* * * * * * *
86428061 TGTACACCATGTAGACAAGAGAGCTACGAGATAAATGCAGCTAGGTTGCATGTGTGGTTCCAGGT
1 TGTACACCATGTAGACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACTA--T
86428126 G
64 G
* * * * * * * * *
86428127 AAGGACACCATGTAAACAATAGAGCTACGAGATA-AAGTGGCTAGGTCACATGGGTGGTACTAAG
1 -TGTACACCATGTAGACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACTATG
*
86428191 TGTTCACCATGT-GTACAAGAGAGC
1 TGTACACCATGTAG-ACAAGAGAGC
86428215 CAAAATTATG
Statistics
Matches: 182, Mismatches: 31, Indels: 15
0.80 0.14 0.07
Matches are distributed among these distances:
63 18 0.10
64 82 0.45
65 3 0.02
66 23 0.13
67 29 0.16
68 26 0.14
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
TGTACACCATGTAGACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACTATG
Found at i:86430512 original size:30 final size:30
Alignment explanation
Indices: 86430478--86430538 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
86430468 TCCTTAACTC
86430478 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
86430508 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
86430538 A
1 A
86430539 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:86433197 original size:12 final size:14
Alignment explanation
Indices: 86433166--86433198 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
86433156 TTTGACTTGT
86433166 TCTTAATTATGTGC
1 TCTTAATTATGTGC
86433180 TCTTAATTAT-TG-
1 TCTTAATTATGTGC
86433192 TCTTAAT
1 TCTTAAT
86433199 ATTCCAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 2 0.11
14 10 0.53
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.55
Consensus pattern (14 bp):
TCTTAATTATGTGC
Found at i:86440346 original size:48 final size:48
Alignment explanation
Indices: 86440275--86440639 Score: 342
Period size: 48 Copynumber: 7.6 Consensus size: 48
86440265 TATGTGTGCT
* *
86440275 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * *
86440323 AGTGTAAGACCATGTCTGGGACATGGCTTTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * * * * **
86440371 AGTGTAAGACCAT-TTTGGAACATGGAACCGGTAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * **
86440418 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * * * ** ** *
86440466 AGAGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTACAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * ** * *
86440514 AGAGTAAGACCATGTCTGGGACATGGCATTGGCATTGA-AATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-ACATTATGAGAGCC
* ** **
86440562 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGACAAT--GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAAC-ATTATGAGAGCC
**
86440609 AGTGTAAGACCATGTCCAGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
86440640 ACAATTTACC
Statistics
Matches: 275, Mismatches: 38, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
47 72 0.26
48 200 0.73
49 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
Found at i:86440413 original size:95 final size:96
Alignment explanation
Indices: 86440278--86440547 Score: 326
Period size: 95 Copynumber: 2.8 Consensus size: 96
86440268 GTGTGCTAGT
* * * * * **
86440278 GTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGG
1 GTAAGACCATGTTTGGAACATGGAACCAGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGGG
* * *
86440343 ACATGGCTTTGGCCACATTATGAGAGCCAGT
66 ACATGGCATTGGCAACATTATGAGAGCCAGA
* * * *
86440374 GTAAGACCAT-TTTGGAACATGGAACCGGTAATGTTATGAGAGCCAGTGTAAGACCATGTTTGGA
1 GTAAGACCATGTTTGGAACATGGAACCAGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGGG
* **
86440438 ACATGGCATCGGCAATGTTATGAGAGCCAGA
66 ACATGGCATTGGCAACATTATGAGAGCCAGA
* * ** * *
86440469 GTAAGACCATGTTTGGAACATGGCATCAGCAATGTTACAAGAGCTAGAGTAAGACCATGTCTGGG
1 GTAAGACCATGTTTGGAACATGGAACCAGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGGG
86440534 ACATGGCATTGGCA
66 ACATGGCATTGGCA
86440548 TTGAAATGAG
Statistics
Matches: 145, Mismatches: 28, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
95 78 0.54
96 67 0.46
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (96 bp):
GTAAGACCATGTTTGGAACATGGAACCAGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATTGGCAACATTATGAGAGCCAGA
Found at i:86440527 original size:96 final size:96
Alignment explanation
Indices: 86440275--86440591 Score: 377
Period size: 96 Copynumber: 3.3 Consensus size: 96
86440265 TATGTGTGCT
* * * **
86440275 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTATGAGAGCCAGTGTAAGACCATGTCT
* * **
86440340 GGGACATGGCTTTGGCCACATTATGAGAGCC
66 GGGACATGGCATTGGCAATGTTATGAGAGCC
* * * * *
86440371 AGTGTAAGACCAT-TTTGGAACATGGAACCGGTAATGTTATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTATGAGAGCCAGTGTAAGACCATGTCT
* *
86440435 GGAACATGGCATCGGCAATGTTATGAGAGCC
66 GGGACATGGCATTGGCAATGTTATGAGAGCC
* ** * *
86440466 AGAGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTACAAGAGCTAGAGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTATGAGAGCCAGTGTAAGACCATGTCT
* ** *
86440531 GGGACATGGCATTGGCATTGAAATGAGAGCT
66 GGGACATGGCATTGGCAATGTTATGAGAGCC
*
86440562 AGTGTAAGACCATGTCTAGG-ACATGGCATC
1 AGTGTAAGACCATGT-TTGGAACATGGCATC
86440592 GGCCTCGACA
Statistics
Matches: 185, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
95 78 0.42
96 104 0.56
97 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (96 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATTGGCAATGTTATGAGAGCC
Found at i:86440633 original size:143 final size:143
Alignment explanation
Indices: 86440272--86440638 Score: 359
Period size: 143 Copynumber: 2.6 Consensus size: 143
86440262 TGATATGTGT
* * *
86440272 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATTAT-AGAGCCAGTGTAAGACCAT
* * ** * ** * *
86440336 GTCTGGGACATGGCTTTGGCCACATTATGAGAGCCAGTGTAAGACCATTTTGGAACATGGAACCG
65 GTCTAGGACATGGCATCAGCAACATTACAAGAGCCAGAGTAAGACCATTCTGGAACATGGAACCG
* **
86440401 GTAATGTTATGAGA
130 GCAATGAAATGAGA
* * * *
86440415 GCCAGTGTAAGACCATGT-TTGGAACATGGCATCGGCAAT-G-TTATGAGAGCCAGAGTAAGACC
1 GCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGC-CTCGATTAT-AGAGCCAGTGTAAGACC
* ** * * *
86440477 ATGT-TTGGAACATGGCATCAGCAATGTTACAAGAGCTAGAGTAAGACCATGTCTGGGACATGGC
63 ATGTCTAGG-ACATGGCATCAGCAACATTACAAGAGCCAGAGTAAGACCAT-TCTGGAACATGGA
** *
86440541 ATTGGCATTGAAATGAGA
126 ACCGGCAATGAAATGAGA
**
86440559 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGACAAT-GAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATTATAGAGCCAGTGTAAGACCATG
*
86440623 TCCAGGACATGGCATC
66 TCTAGGACATGGCATC
86440639 GACAATTTAC
Statistics
Matches: 181, Mismatches: 34, Indels: 18
0.78 0.15 0.08
Matches are distributed among these distances:
142 6 0.03
143 115 0.64
144 55 0.30
145 5 0.03
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (143 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATTATAGAGCCAGTGTAAGACCATG
TCTAGGACATGGCATCAGCAACATTACAAGAGCCAGAGTAAGACCATTCTGGAACATGGAACCGG
CAATGAAATGAGA
Found at i:86449815 original size:39 final size:39
Alignment explanation
Indices: 86449714--86449972 Score: 298
Period size: 39 Copynumber: 6.6 Consensus size: 39
86449704 GCTCCTCGTT
* *
86449714 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAA-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* *
86449753 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
*
86449792 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* *
86449831 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
86449870 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * *
86449909 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGTAAC-TCGCA
86449950 C--A-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
86449973 CATCATTCAA
Statistics
Matches: 199, Mismatches: 14, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
38 45 0.23
39 121 0.61
40 25 0.13
41 8 0.04
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:86457729 original size:39 final size:39
Alignment explanation
Indices: 86457685--86457905 Score: 247
Period size: 39 Copynumber: 5.6 Consensus size: 39
86457675 GCTCCTCGTT
*
86457685 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
86457725 -AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
86457764 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
* *
86457803 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
* * *
86457842 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTATA-GTAAC-TCGCA
86457882 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
86457906 ACATTCAAAT
Statistics
Matches: 161, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
38 4 0.02
39 124 0.77
40 33 0.20
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:86457786 original size:78 final size:78
Alignment explanation
Indices: 86457685--86457906 Score: 272
Period size: 78 Copynumber: 2.8 Consensus size: 78
86457675 GCTCCTCGTT
* *
86457685 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA-AAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
86457749 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
86457764 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
86457828 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * *
86457842 CAAATGCCTTCGGATCTTAGTCCGG-ATATGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGTATA-GTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
86457905 GA
63 GA
86457907 CATTCAAATA
Statistics
Matches: 126, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 3 0.02
78 68 0.54
79 55 0.44
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:86465762 original size:40 final size:40
Alignment explanation
Indices: 86465645--86465824 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
86465635 ACCCAAGTTT
* * * * * *
86465645 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
* * * * * *
86465684 CTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGC
* *
86465724 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
*
86465764 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
86465804 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
86465825 TCATTCAAAT
Statistics
Matches: 120, Mismatches: 18, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 11 0.09
40 106 0.88
41 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
Found at i:86478104 original size:48 final size:48
Alignment explanation
Indices: 86477993--86478312 Score: 264
Period size: 48 Copynumber: 6.7 Consensus size: 48
86477983 GGTTATTTGT
* * * *
86477993 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TAGA-AGAT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAG
*
86478037 GTGTTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAG
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAG
* * * *
86478085 GTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGTATAGAG
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAG
* * *
86478133 GTACGAGTGTAAGACCATGTCTGGGACATGGAATCTATATG-A-ATATATGA-
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATC---A-GCACATATA-GAG
* * * ***
86478183 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGC-CTTGATTTCG
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAT-ATAGAG
* * * * * *
86478231 ATAGTTAGTGTAAGACCATGTCTAGGACATGGCATC-G-ACTTGATGGAT
1 GT-GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAT-ATAGAG
* *
86478279 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCAT
86478313 TGGAATTATA
Statistics
Matches: 222, Mismatches: 39, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
44 13 0.06
45 14 0.06
46 8 0.04
47 33 0.15
48 86 0.39
49 30 0.14
50 34 0.15
51 3 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAG
Found at i:86478288 original size:146 final size:146
Alignment explanation
Indices: 86478041--86478309 Score: 348
Period size: 146 Copynumber: 1.8 Consensus size: 146
86478031 GAAGATGTGT
* *
86478041 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAGGTGCCAGTGTAAGACCATGTT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAGATGCCAGTGTAAGACCATGTC
* *
86478106 TGGGACATGGCATCGGCACGTATAGAGGTACGAGTGTAAGACCATGTCTGGGACATGGAATCTAT
66 TAGGACATGGCATCGGCACGTATAGAGGTACCAGTGTAAGACCATGTCTGGGACATGGAATCTAT
86478171 ATGAATATATGAGAGC
131 ATGAATATATGAGAGC
* * *** **
86478187 TAGTGTAAGACCATGTCTGGGACATGGCGTCAGC-CTTGATTTCGATAGTTAGTGTAAGACCATG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAT-ATAGAGAT-GCCAGTGTAAGACCATG
* * *
86478251 TCTAGGACATGGCATC-G-ACTTGATGGATG-AGCCAGTGTAAGACCATGTCTGGGACATGG
64 TCTAGGACATGGCATCGGCACGT-ATAGAGGTA-CCAGTGTAAGACCATGTCTGGGACATGG
86478310 CATTGGAATT
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
145 6 0.06
146 70 0.67
147 29 0.28
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (146 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAGATGCCAGTGTAAGACCATGTC
TAGGACATGGCATCGGCACGTATAGAGGTACCAGTGTAAGACCATGTCTGGGACATGGAATCTAT
ATGAATATATGAGAGC
Found at i:86483687 original size:51 final size:50
Alignment explanation
Indices: 86483612--86483711 Score: 182
Period size: 51 Copynumber: 2.0 Consensus size: 50
86483602 TGTTGATATG
86483612 AAAGAATTTTTTTTGTAATAAAAAACTCAACTCTTATTACAAGTGAATTA
1 AAAGAATTTTTTTTGTAATAAAAAACTCAACTCTTATTACAAGTGAATTA
*
86483662 AAAGAATTTTTTTTTGTAATGAAAAACTCAACTCTTATTACAAGTGAATT
1 AAAGAA-TTTTTTTTGTAATAAAAAACTCAACTCTTATTACAAGTGAATT
86483712 TCTGAAAATT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
50 6 0.12
51 42 0.88
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (50 bp):
AAAGAATTTTTTTTGTAATAAAAAACTCAACTCTTATTACAAGTGAATTA
Found at i:86484207 original size:23 final size:23
Alignment explanation
Indices: 86484162--86484207 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
86484152 AAAGCAAAAC
**
86484162 AAAAAAAAAATAAAAATGTAGTG
1 AAAAAAAAAATAAAAATAAAGTG
* *
86484185 AAAAATAAAATAATAATAAAGTG
1 AAAAAAAAAATAAAAATAAAGTG
86484208 GGATGGGAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.70, C:0.00, G:0.11, T:0.20
Consensus pattern (23 bp):
AAAAAAAAAATAAAAATAAAGTG
Found at i:86488569 original size:72 final size:70
Alignment explanation
Indices: 86488446--86488633 Score: 182
Period size: 72 Copynumber: 2.6 Consensus size: 70
86488436 ATACCCGCAT
* * *
86488446 TTGAGTTACTCACGGGTCTATACACAAAGTCAGCACCC-AGACCCCAAAGCATTATCAT-GTAAT
1 TTGAG-TACTCAC-GGTTTATACACAAAGTCAGTACCCGA-ACCCCAAAGCATTAACATGGT-AT
*
86488509 GCCCGCTCA
62 GACCGCTCA
* *
86488518 TTGAGCTACTCACGTGTTTATACACAAAGTCAGTACCCGAACCCTAGAGCATTAACATGGTATGA
1 TTGAG-TACTCACG-GTTTATACACAAAGTCAGTACCCGAACCCCAAAGCATTAACATGGTATGA
*
86488583 CCGCTTA
64 CCGCTCA
*** * *
86488590 GCAAGTGACTCACAGGTTTATACACAAAGTCAGTTCCCGGACCC
1 TTGAGT-ACTCAC-GGTTTATACACAAAGTCAGTACCCGAACCC
86488634 ACATTATATA
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
71 2 0.02
72 92 0.94
73 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (70 bp):
TTGAGTACTCACGGTTTATACACAAAGTCAGTACCCGAACCCCAAAGCATTAACATGGTATGACC
GCTCA
Found at i:86495385 original size:72 final size:72
Alignment explanation
Indices: 86495283--86495459 Score: 239
Period size: 72 Copynumber: 2.5 Consensus size: 72
86495273 ATGCCCACAT
* *
86495283 TTGAGTTACTCACGGGTCTATACACAAAGTCAGCACCCGGACCCCAAAGCATTATCATG-TAATG
1 TTGAGTTACTCACGGGTTTATACACAAAGTCAGCACCCGGACCCCAAAGCATTAACATGAT-ATG
86495347 CTCACTCA
65 CTCACTCA
* ** *
86495355 TTGAGCTACTCACGGGTTTATACACAAAGTCAATACCGGGACCCCAAAGCATTAACATGATATGC
1 TTGAGTTACTCACGGGTTTATACACAAAGTCAGCACCCGGACCCCAAAGCATTAACATGATATGC
*
86495420 TCGCTCA
66 TCACTCA
** * *
86495427 GAGAGTTACTCACAGGTTTATAAACAAAGTCAG
1 TTGAGTTACTCACGGGTTTATACACAAAGTCAG
86495460 TACCTGGTCT
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
72 90 0.99
73 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (72 bp):
TTGAGTTACTCACGGGTTTATACACAAAGTCAGCACCCGGACCCCAAAGCATTAACATGATATGC
TCACTCA
Found at i:86497115 original size:55 final size:53
Alignment explanation
Indices: 86496986--86497180 Score: 173
Period size: 53 Copynumber: 3.6 Consensus size: 53
86496976 ATTAGGGTTT
* * * *
86496986 AAGGATACCATGTAAGACCATG-CAAAAGCTTGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGA-CAT-GAAATTGATAA-G-TTCATAAGGC
* *
86497041 AA-GATATCATGTAAGACCATGTAAAGACATGAAATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGAAATTGATAAG-TTC-ATAAGGC
* * * ** * *
86497095 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGAAATTGATAAGTTCATAAGGC
*
86497148 AAGGATACCATGTAAGACCATGTCGAGACATGA
1 AAGGATACCATGTAAGACCATGTCAAGACATGA
86497181 CAATGGTACG
Statistics
Matches: 114, Mismatches: 20, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
52 9 0.08
53 39 0.34
54 29 0.25
55 36 0.32
56 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGAAATTGATAAGTTCATAAGGC
Found at i:86497159 original size:53 final size:54
Alignment explanation
Indices: 86496986--86497169 Score: 205
Period size: 54 Copynumber: 3.4 Consensus size: 54
86496976 ATTAGGGTTT
* *
86496986 AAGGATACCATGTAAGACCATGCAAAAGCTTGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCAAAGGCATGGC-ATTGGTAA-GTTTCATAAGGC
* * * ** *
86497041 AA-GATATCATGTAAGACCATGTAAAGACATGAAATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCAAAGGCATGGCATTGGTAAGTTTC-ATAAGGC
* * *
86497095 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCAAAGGCATGGCATTGGTAAGTTTCATAAGGC
86497148 AAGGATACCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
86497170 TCGAGACATG
Statistics
Matches: 106, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
52 9 0.08
53 30 0.28
54 33 0.31
55 33 0.31
56 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCAAAGGCATGGCATTGGTAAGTTTCATAAGGC
Found at i:86500499 original size:40 final size:40
Alignment explanation
Indices: 86500409--86500612 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
86500399 TCGAATGATG
* *
86500409 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
86500449 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
86500488 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
86500528 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
86500568 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
86500608 TCCGG
1 TCCGG
86500613 TTAAATTTTG
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.26
40 95 0.68
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:86500548 original size:79 final size:81
Alignment explanation
Indices: 86500409--86500591 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
86500399 TCGAATGATG
* * *
86500409 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCAGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCAGACTAAGATCCGAAGGCATT
86500473 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
86500488 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCAGACTAAGAT-CCGAAGGCA
86500550 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
86500568 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
86500592 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCAGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:86500615 original size:79 final size:79
Alignment explanation
Indices: 86500462--86500616 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
86500452 AGACTAAGAT
* **
86500462 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTCACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
86500527 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
86500541 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGT-AGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTCA-C
*
86500604 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
86500617 ATTTTGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
ATCCGGGTTAAGTC
Found at i:86507420 original size:39 final size:40
Alignment explanation
Indices: 86507320--86507504 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
86507310 TTGAATGATG
* * *
86507320 TCTGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTATAT
1 TCTGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
*
86507361 TC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCTGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
86507400 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 TCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
86507439 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTTCT-AT
1 TCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* ** *
86507478 AACCAGGCTATGTCCCGAAGGCATTTG
1 -TCTGGGCTAAGTCCCGAAGGCATTTG
86507505 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
39 38 0.32
40 72 0.60
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:86507526 original size:79 final size:79
Alignment explanation
Indices: 86507373--86507527 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
86507363 GGACTAAGAT
* ** **
86507373 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTCACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
86507438 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
86507452 CCGAAGGCATTTGTGCGAGTTTCT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAGT-AGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTCA-C
*
86507515 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
86507528 ATTCTGAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 37 0.58
80 25 0.39
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
ATCCGGGTTAAGTC
Found at i:86514843 original size:47 final size:45
Alignment explanation
Indices: 86514772--86515086 Score: 242
Period size: 47 Copynumber: 6.8 Consensus size: 45
86514762 TGATTTGTAC
* *
86514772 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGA
** *
86514818 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGGCGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGAGA
* * ** * * *
86514866 GCTAGTGTAAGACATGTCTGGGACATGCTTCAACCATATTATGAGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGA
* * * *
86514912 GCCAGAGTAAGACATGTCTAGGACATGCATTGGCCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAGATGAGA
* * * * *
86514959 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATG-AGA
* * * *
86515003 GCTAGTGTAAGACATGTCTGGGACATGCATCCGCATGCATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC---CACAGATGAGA
86515051 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
86515087 AATTTATCCC
Statistics
Matches: 208, Mismatches: 44, Indels: 30
0.74 0.16 0.11
Matches are distributed among these distances:
43 4 0.02
44 31 0.15
45 1 0.00
46 46 0.22
47 64 0.31
48 36 0.17
49 19 0.09
50 7 0.03
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGA
Found at i:86517848 original size:55 final size:55
Alignment explanation
Indices: 86517761--86518015 Score: 264
Period size: 55 Copynumber: 4.8 Consensus size: 55
86517751 ATTAGGGTTT
*
86517761 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCATAAGGC
* * * *
86517816 AAGGATATCACGTAAGACCATGTCAAGACATGG-AATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-ATAAGGC
* * *
86517871 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCATAAGGC
* * *
86517924 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGCAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCATAAGGC
* * * *
86517973 AAGGATACCACGTAAGACCATGACAAGTCATAGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
86518016 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 37 0.22
52 6 0.04
53 42 0.25
54 15 0.09
55 65 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCATAAGGC
Found at i:86517968 original size:108 final size:110
Alignment explanation
Indices: 86517768--86517970 Score: 306
Period size: 108 Copynumber: 1.9 Consensus size: 110
86517758 TTTAAGGATA
*
86517768 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCACGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCACGTAAGA
*
86517833 CCATGTCAAGACATGGAATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAATTGACAAGTTTCTATAAGGCAAAGGTC
* *
86517878 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCACGTAAG
* *
86517940 ACCATGTCGAGACATGGCAA-TGGCAAGTTTC
65 ACCATGTCAAGACATGG-AATTGACAAGTTTC
86517971 AAAAGGATAC
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
107 3 0.04
108 46 0.54
109 9 0.11
110 27 0.32
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCACGTAAGA
CCATGTCAAGACATGGAATTGACAAGTTTCTATAAGGCAAAGGTC
Found at i:86518229 original size:16 final size:16
Alignment explanation
Indices: 86518208--86518238 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86518198 ATAAATTTGA
86518208 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
86518224 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
86518239 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:86524218 original size:33 final size:32
Alignment explanation
Indices: 86524181--86524248 Score: 75
Period size: 31 Copynumber: 2.1 Consensus size: 32
86524171 TTTTTATTTC
*
86524181 TTTAAATGTATATAATTAAATCAAAATTAAAAT
1 TTTAAA-GTATATAATTAAACCAAAATTAAAAT
* * * *
86524214 TTT-AAGTATATATTTGAACCACAATTAAAGT
1 TTTAAAGTATATAATTAAACCAAAATTAAAAT
86524245 TTTA
1 TTTA
86524249 CGTGTATCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
31 24 0.83
32 2 0.07
33 3 0.10
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (32 bp):
TTTAAAGTATATAATTAAACCAAAATTAAAAT
Found at i:86524223 original size:31 final size:31
Alignment explanation
Indices: 86524188--86524305 Score: 82
Period size: 31 Copynumber: 3.9 Consensus size: 31
86524178 TTCTTTAAAT
86524188 GTATATAATTAAATCAAAATTAAAATTTTAA
1 GTATATAATTAAATCAAAATTAAAATTTTAA
* * * * * *
86524219 GTATATATTTGAACCACAATTAAAGTTTTAC
1 GTATATAATTAAATCAAAATTAAAATTTTAA
* * *
86524250 GTGTATCATTATATC--AATTAAAA--TTAA
1 GTATATAATTAAATCAAAATTAAAATTTTAA
* * *
86524277 TATATATAATTATATACTAAATTAAAATT
1 -GTATATAATTAAAT-CAAAATTAAAATT
86524306 CATGTAATTT
Statistics
Matches: 64, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
27 3 0.05
28 11 0.17
29 8 0.12
31 42 0.66
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (31 bp):
GTATATAATTAAATCAAAATTAAAATTTTAA
Found at i:86524534 original size:24 final size:24
Alignment explanation
Indices: 86524479--86524534 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
86524469 CTAGAGAATT
* *
86524479 TTATTTTGAAATTTTATTTAGGTA
1 TTATTTTAAAATTTTATTTACGTA
* *
86524503 ATAGTTTAAAATTTTATATTACG-A
1 TTATTTTAAAATTTTAT-TTACGTA
86524527 TTATTTTA
1 TTATTTTA
86524535 TTTATCACCT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (24 bp):
TTATTTTAAAATTTTATTTACGTA
Found at i:86525487 original size:13 final size:13
Alignment explanation
Indices: 86525471--86525536 Score: 71
Period size: 13 Copynumber: 5.1 Consensus size: 13
86525461 TTTAAACCAA
*
86525471 ACTTTTCAAAAAC
1 ACTTTTCAAAAGC
*
86525484 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
86525497 ACTTTTTC-ACAGT
1 AC-TTTTCAAAAGC
*
86525510 ATTTTTCAAAAGC
1 ACTTTTCAAAAGC
86525523 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
86525536 A
1 A
86525537 TTGCCAAACT
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
12 5 0.12
13 33 0.79
14 4 0.10
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:86528811 original size:25 final size:24
Alignment explanation
Indices: 86528736--86528812 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 24
86528726 CATGTCCTAG
86528736 ACATGGTCTTACTCTGGCTCTCATA
1 ACATGGTCTTAC-CTGGCTCTCATA
* * * *
86528761 ACATTGCCAATGCCAT-GCTC-CA-A
1 ACATGGTC-TTACC-TGGCTCTCATA
86528784 ACATGGTCTTACACTGGCTCTCATA
1 ACATGGTCTTAC-CTGGCTCTCATA
86528809 ACAT
1 ACAT
86528813 TGCTGATGCC
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
22 3 0.08
23 12 0.32
24 4 0.11
25 16 0.42
26 3 0.08
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (24 bp):
ACATGGTCTTACCTGGCTCTCATA
Found at i:86528904 original size:48 final size:48
Alignment explanation
Indices: 86528574--86528941 Score: 336
Period size: 48 Copynumber: 7.7 Consensus size: 48
86528564 AGGGTAAATT
* * * * ** *
86528574 GCCGATGCCATGTCCTAGACATGGTCTTACATTGGTTCACATGTTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* * * * * *
86528622 GCCGATGTCATGTCCCAGACATGGTCTTACTCTGGTTCACAT-GTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
* * *
86528670 GCCGATGCCATGTCCTAGACATGATCTTACACTAGCTCTTGTC-TCAA--T-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC---TCAT-AATGTG
* * ** *
86528718 GCCGATGCCATGTCCTAGACATGGTCTTACTCTGGCTCTCATAACATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* * ** *
86528766 GCCAATGCCATG-CTCCAAACATGGTCTTACACTGGCTCTCATAACATT
1 GCCGATGCCATGTC-CCAGACATGGTCTTACACTGGCTCTCATAATGTG
* * * *
86528814 GCTGATGCCATGTTCCA-AAATGGTCTTACAGTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
86528861 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
** *
86528909 GCATATGCCATGTCCCATACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
86528942 AGCACACATA
Statistics
Matches: 271, Mismatches: 36, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
45 4 0.01
46 1 0.00
47 43 0.16
48 221 0.82
50 1 0.00
51 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
Found at i:86533283 original size:93 final size:93
Alignment explanation
Indices: 86533124--86533295 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
86533114 CGCCCATAAG
* * *
86533124 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGAATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
86533189 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
86533217 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
86533282 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86533296 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86533292 original size:46 final size:46
Alignment explanation
Indices: 86533117--86533292 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
86533107 TGTAACCCGC
* * * * *
86533117 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGAAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
86533163 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
86533213 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
86533256 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86533293 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:86535224 original size:15 final size:15
Alignment explanation
Indices: 86535195--86535244 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
86535185 AAAAGATAAC
*
86535195 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
86535209 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
86535224 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
86535239 AAGAAA
1 AAGAAA
86535245 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:86535253 original size:15 final size:15
Alignment explanation
Indices: 86535206--86535253 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
86535196 AGAAAACCGA
86535206 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
86535220 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
86535236 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
86535251 ATA
1 ATA
86535254 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86538223 original size:46 final size:44
Alignment explanation
Indices: 86538156--86538329 Score: 206
Period size: 46 Copynumber: 3.8 Consensus size: 44
86538146 TGTAACCCGC
*
86538156 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TT-GCAT
* *
86538202 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-CTTGCAT
* *** *
86538248 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGGC-TTGCAT
86538294 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
86538330 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
44 1 0.01
45 30 0.28
46 45 0.42
47 29 0.27
48 2 0.02
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTGCAT
Found at i:86538322 original size:92 final size:93
Alignment explanation
Indices: 86538164--86538333 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
86538154 GCCCATAAGT
* *
86538164 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86538229 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
86538257 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86538321 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86538334 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 44 0.59
93 30 0.41
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:86540263 original size:15 final size:15
Alignment explanation
Indices: 86540234--86540283 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
86540224 CAAAGATAAC
*
86540234 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
86540248 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
86540263 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
86540278 AAGAAA
1 AAGAAA
86540284 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:86540292 original size:15 final size:15
Alignment explanation
Indices: 86540245--86540292 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
86540235 AGAAAACCGA
86540245 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
86540259 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
86540275 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
86540290 ATA
1 ATA
86540293 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86543324 original size:46 final size:46
Alignment explanation
Indices: 86543164--86543336 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
86543154 ATGTAACCCG
* * *
86543164 CCATAAGCGAACTC--ACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * *
86543207 CCATGAGTGAACTCGGACTCAACTGAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
86543257 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
86543300 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86543337 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
43 18 0.17
44 2 0.02
45 20 0.19
46 29 0.28
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:86543336 original size:93 final size:90
Alignment explanation
Indices: 86543171--86543339 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 90
86543161 CCGCCATAAG
* * *
86543171 CGAACTCACTCAACTCAACGAGCTCGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTGAACG
1 CGAACTCACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
86543236 AGTTCGGATGCCTAGTTACATCTCA
66 AGTTCGGATGCCTAGTTACATCTCA
* *
86543261 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTC--ACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86543326 ACGAGTTCGGATGC
63 ACGAGTTCGGATGC
86543340 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
90 7 0.10
92 19 0.27
93 45 0.63
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (90 bp):
CGAACTCACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCA
Found at i:86543355 original size:46 final size:45
Alignment explanation
Indices: 86543212--86543355 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
86543202 CGCATCCATG
*
86543212 AGTGAACTCGGACTCAACTGAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
86543259 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
86543305 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
86543351 AGTGA
1 AGTGA
86543356 CATGTTAGTT
Statistics
Matches: 78, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.42
47 30 0.38
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:86547961 original size:47 final size:47
Alignment explanation
Indices: 86547907--86548221 Score: 468
Period size: 47 Copynumber: 6.6 Consensus size: 47
86547897 TATTTGAATA
86547907 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
86547954 AATGTGAAGGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
86548001 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
86548050 AATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
86548101 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
86548148 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
86548195 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
86548222 TTTCGAAGGG
Statistics
Matches: 252, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 157 0.62
49 47 0.19
51 48 0.19
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:86548093 original size:147 final size:145
Alignment explanation
Indices: 86547919--86548210 Score: 467
Period size: 147 Copynumber: 2.0 Consensus size: 145
86547909 TGTGAAAGTG
*
86547919 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * *
86547984 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
66 GAATAGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATAGCCAACGTGAT
86548049 GAATGTGAAAGTGTATA
129 GAATGTGAAAGTGTATA
86548066 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * *
86548131 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGG
66 GAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGA
86548196 ATGTGAAAGTGTATA
131 ATGTGAAAGTGTATA
86548211 AATGTGATAA
Statistics
Matches: 134, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
145 44 0.33
147 90 0.67
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (145 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGA
ATGTGAAAGTGTATA
Found at i:86549383 original size:15 final size:15
Alignment explanation
Indices: 86549354--86549405 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
86549344 CAAAGATAAC
*
86549354 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
86549368 AAGAAACCCAGAATA
1 AAGAAACCCAGAATA
* * * *
86549383 AAGAGATCTAGGATA
1 AAGAAACCCAGAATA
86549398 AAGAAACC
1 AAGAAACC
86549406 TAAGATACGA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 8 0.27
15 22 0.73
ACGTcount: A:0.58, C:0.15, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:86552443 original size:47 final size:49
Alignment explanation
Indices: 86552327--86552505 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 49
86552317 TATAACCCGC
* * *
86552327 CCATAAGCGAACTCGGACTCAACTCTACGAGATCGG--G-C-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
** *
86552373 CCAGGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * * *
86552423 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
86552466 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
86552506 TCAACCATCC
Statistics
Matches: 107, Mismatches: 15, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:86552493 original size:93 final size:93
Alignment explanation
Indices: 86552334--86552505 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
86552324 CGCCCATAAG
* * * *
86552334 CGAACTCGGACTCAACTCTACGAGATCGGGCGTTCGCATCCAGGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCAGAAGTGAACTCGGACTCAACTCA
86552399 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
86552427 CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCAGAAGTGAACTCGGACTCAACTCA
86552492 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86552506 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCAGAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86552521 original size:46 final size:45
Alignment explanation
Indices: 86552378--86552521 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
86552368 CGCATCCAGG
86552378 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * * *
86552425 CA-CGAACTCGGACTCAACTCAACGAGTTTGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
86552471 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
86552517 AGTGA
1 AGTGA
86552522 CATGTCAGTA
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 32 0.42
47 30 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:86557507 original size:93 final size:93
Alignment explanation
Indices: 86557348--86557519 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
86557338 TGCCCATAAG
* *
86557348 CGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCAGGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCAGAAGTGAACTCGGACTCAACTCA
86557413 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
86557441 CGAACTTGGACTCAACTCAACGAGTTCG-GACATTTGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCATCCAGAAGTGAACTCGGACTCAACTC
86557505 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
86557520 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCAGAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86557515 original size:46 final size:47
Alignment explanation
Indices: 86557341--86557516 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 47
86557331 TGTAACCTGC
* * *
86557341 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCAT
** * * *
86557387 CCAGGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-ATTTGCAT
* *
86557437 -C-TCA-CGAACTTGGACTCAACTCAACGAGTTCGGA-CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCAT
*
86557480 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86557517 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.55
47 30 0.28
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCAT
Found at i:86557535 original size:46 final size:45
Alignment explanation
Indices: 86557392--86557535 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
86557382 CGCATCCAGG
86557392 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * * *
86557439 CA-CGAACTTGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
86557485 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
86557531 AGTGA
1 AGTGA
86557536 CATGTCAGTT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 32 0.42
47 30 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:86566418 original size:39 final size:40
Alignment explanation
Indices: 86566323--86566544 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
86566313 TTGAATGATG
*
86566323 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
86566361 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
86566402 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
86566441 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
86566480 TCCGGGTTAAGTCCCGAAGGCATTT-TGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
86566518 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
86566545 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 11, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
38 1 0.01
39 123 0.76
40 26 0.16
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:86566562 original size:79 final size:79
Alignment explanation
Indices: 86566323--86566577 Score: 208
Period size: 78 Copynumber: 3.3 Consensus size: 79
86566313 TTGAATGATG
* * * *
86566323 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
86566384 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
86566402 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
86566466 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
86566480 TCCGGGTTAAGTCCCGAAGGCATTT-TGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
86566542 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
86566559 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
86566578 TACGTGATTT
Statistics
Matches: 152, Mismatches: 14, Indels: 21
0.81 0.07 0.11
Matches are distributed among these distances:
77 4 0.03
78 76 0.50
79 60 0.39
80 11 0.07
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:86574464 original size:39 final size:39
Alignment explanation
Indices: 86574366--86574509 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 39
86574356 CATTTGAATG
* *
86574366 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGA-T
* *
86574406 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGAT
* *
86574445 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGAT
* *
86574485 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
86574510 ATTGTGCTTG
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 33 0.35
40 62 0.65
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGAT
Found at i:86574536 original size:79 final size:79
Alignment explanation
Indices: 86574366--86574512 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 79
86574356 CATTTGAATG
* * * * * *
86574366 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
*
86574431 TTTATGCGAGTGAT
66 ATTATGCGAGTGAT
* *
86574445 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
86574509 AATT
65 AATT
86574513 GTGCTTGTGG
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
79 56 0.97
80 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTATGCGAGTGAT
Found at i:86582422 original size:40 final size:41
Alignment explanation
Indices: 86582363--86582514 Score: 202
Period size: 40 Copynumber: 3.8 Consensus size: 41
86582353 CATTTGAATG
* * *
86582363 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
86582403 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
86582443 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
86582483 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
86582515 TTGTGGTTAT
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
40 97 0.97
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:86582526 original size:80 final size:80
Alignment explanation
Indices: 86582363--86582534 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 80
86582353 CATTTGAATG
* * * * * *
86582363 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCAAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
86582428 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
86582443 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCAAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
86582507 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
86582523 ATATCC-GGCTAA
1 ATATCCGGGCTAA
86582535 ATTTCGAAGA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 6 0.08
80 70 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCAAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:86585417 original size:18 final size:18
Alignment explanation
Indices: 86585396--86585446 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
86585386 CGTGTGGGCT
86585396 ACACGGGCATGTGGGCCC
1 ACACGGGCATGTGGGCCC
86585414 ACACGGGCATGTGGGCCC
1 ACACGGGCATGTGGGCCC
*
86585432 ACACGGGCGTGTGGG
1 ACACGGGCATGTGGG
86585447 ATTCTAGGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.16, C:0.29, G:0.43, T:0.12
Consensus pattern (18 bp):
ACACGGGCATGTGGGCCC
Found at i:86588024 original size:41 final size:40
Alignment explanation
Indices: 86587913--86588030 Score: 107
Period size: 41 Copynumber: 2.9 Consensus size: 40
86587903 GGATTAGGCC
86587913 GATTT-TACGAAAACGCTT-CAAGCTGGAAGCGTTTTCAACT
1 GATTTGTA-GAAAACGCTTCCAA-CTGGAAGCGTTTTCAACT
* * * * *
86587953 GATTTGTAGAAAAGCACATCCAGCTAGAAGCGTTTT-AAGT
1 GATTTGTAGAAAA-CGCTTCCAACTGGAAGCGTTTTCAACT
* *
86587993 GTATTTGCTGGAAAACGCTTCCAACTGGAAGCGCTTTC
1 G-ATTTG-TAGAAAACGCTTCCAACTGGAAGCGTTTTC
86588031 TGTCATATAA
Statistics
Matches: 61, Mismatches: 11, Indels: 10
0.74 0.13 0.12
Matches are distributed among these distances:
40 14 0.23
41 39 0.64
42 8 0.13
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (40 bp):
GATTTGTAGAAAACGCTTCCAACTGGAAGCGTTTTCAACT
Found at i:86594490 original size:91 final size:92
Alignment explanation
Indices: 86594335--86594502 Score: 295
Period size: 91 Copynumber: 1.8 Consensus size: 92
86594325 GGATGGTTGA
*
86594335 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGTCCGAACTCGTTGAGTT
86594400 GAGT-CGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
86594426 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGTCCGAACTCGTTGAGT
86594490 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
86594503 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
91 53 0.73
92 20 0.27
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86594506 original size:45 final size:46
Alignment explanation
Indices: 86594338--86594507 Score: 201
Period size: 45 Copynumber: 3.7 Consensus size: 46
86594328 TGGTTGAGCA
*
86594338 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
86594383 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
86594427 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
86594475 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86594508 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 9 0.08
45 53 0.50
46 21 0.20
47 7 0.07
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:86602025 original size:47 final size:46
Alignment explanation
Indices: 86601908--86602080 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
86601898 GGATGGTTGA
86601908 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTA-GGATGCGAAT
* *
86601955 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GT-GAGATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAG-GATGCGAA-T
*
86601998 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGATGCGAAT
*
86602048 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
86602081 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 24
0.78 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 31 0.28
46 29 0.27
47 30 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAGGATGCGAAT
Found at i:86602077 original size:93 final size:92
Alignment explanation
Indices: 86601908--86602077 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
86601898 GGATGGTTGA
* *
86601908 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
86601973 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
86602000 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT
86602065 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
86602078 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 34 0.46
93 40 0.54
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86605712 original size:18 final size:18
Alignment explanation
Indices: 86605691--86605735 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
86605681 CAATCTCCTT
86605691 TTGAACAATAG-TCTCCCC
1 TTGAACAATAGCT-TCCCC
* *
86605709 TTGAATAGTAGCTTCCCC
1 TTGAACAATAGCTTCCCC
86605727 TTGAACAAT
1 TTGAACAAT
86605736 GTTGATTTCG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (18 bp):
TTGAACAATAGCTTCCCC
Found at i:86610008 original size:29 final size:28
Alignment explanation
Indices: 86609976--86610042 Score: 64
Period size: 29 Copynumber: 2.4 Consensus size: 28
86609966 GCTAGAAGCG
*
86609976 TTTTTATAAATTCGACCTAATCTCATAAT
1 TTTTTATAAACT-GACCTAATCTCATAAT
* * * *
86610005 TTTTCGAAAAACTGACTTAATCTGATAAT
1 TTTT-TATAAACTGACCTAATCTCATAAT
86610034 TTTTT-TAAA
1 TTTTTATAAA
86610043 ATTTTCGATA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
27 3 0.10
29 22 0.73
30 5 0.17
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (28 bp):
TTTTTATAAACTGACCTAATCTCATAAT
Found at i:86610372 original size:25 final size:25
Alignment explanation
Indices: 86610337--86610392 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
86610327 CGTTGGTTTT
*
86610337 AATTGAATGGTTTTTTTTTCTAAAAA
1 AATT-AATGGTTTTTTTTCCTAAAAA
86610363 AATTAATGGTTTTTTTTCCTAAAAA
1 AATTAATGGTTTTTTTTCCTAAAAA
86610388 AATTA
1 AATTA
86610393 CCTTCCTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (25 bp):
AATTAATGGTTTTTTTTCCTAAAAA
Found at i:86610817 original size:22 final size:22
Alignment explanation
Indices: 86610792--86610835 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
86610782 TAGCCATATA
86610792 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
86610814 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
86610836 TATTTAATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:86610870 original size:13 final size:14
Alignment explanation
Indices: 86610848--86610896 Score: 55
Period size: 13 Copynumber: 3.4 Consensus size: 14
86610838 TTTAATGATT
*
86610848 TAATTTAATTTTAA
1 TAATATAATTTTAA
86610862 TAATA-AATTTTAA
1 TAATATAATTTTAA
*
86610875 AAATAATAATTTTAAA
1 TAAT-ATAATTTT-AA
86610891 TAATAT
1 TAATAT
86610897 TATTCAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 11 0.38
14 5 0.17
15 8 0.28
16 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TAATATAATTTTAA
Found at i:86610881 original size:16 final size:16
Alignment explanation
Indices: 86610859--86610895 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
86610849 AATTTAATTT
86610859 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
86610876 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
86610891 TAATA
1 TAATA
86610896 TTATTCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Done.