Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 256 of 362
Found at i:86610948 original size:15 final size:15
Alignment explanation
Indices: 86610928--86610984 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
86610918 ATTCAATATT
86610928 AATATTTTAATAATA
1 AATATTTTAATAATA
*
86610943 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
86610962 AATATATTAATAATA
1 AATATTTTAATAATA
*
86610977 AATGTTTT
1 AATATTTT
86610985 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:86611504 original size:19 final size:22
Alignment explanation
Indices: 86611480--86611520 Score: 61
Period size: 19 Copynumber: 2.0 Consensus size: 22
86611470 TTTCAATGAA
86611480 ACAAACAA-AAC-C-TATATGT
1 ACAAACAATAACTCATATATGT
86611499 ACAAACAATAACTCATATATGT
1 ACAAACAATAACTCATATATGT
86611521 GGTGGTTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 3 0.16
21 1 0.05
22 7 0.37
ACGTcount: A:0.51, C:0.20, G:0.05, T:0.24
Consensus pattern (22 bp):
ACAAACAATAACTCATATATGT
Found at i:86617982 original size:19 final size:19
Alignment explanation
Indices: 86617958--86617995 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
86617948 GCTACTTTCA
86617958 CCTACCATAATCAAATTTG
1 CCTACCATAATCAAATTTG
*
86617977 CCTACCGTAATCAAATTTG
1 CCTACCATAATCAAATTTG
86617996 TTATTAGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (19 bp):
CCTACCATAATCAAATTTG
Found at i:86620025 original size:31 final size:31
Alignment explanation
Indices: 86619987--86620050 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
86619977 CCCAAAAGGG
86619987 TTTCCACGTAAAATCTGTGTGTTCTATTTTT
1 TTTCCACGTAAAATCTGTGTGTTCTATTTTT
86620018 TTTCCACGTAAAATCTGTGTGTTCTATTTTT
1 TTTCCACGTAAAATCTGTGTGTTCTATTTTT
86620049 TT
1 TT
86620051 CTTTCTTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (31 bp):
TTTCCACGTAAAATCTGTGTGTTCTATTTTT
Found at i:86620904 original size:35 final size:35
Alignment explanation
Indices: 86620858--86620933 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
86620848 TTGTGTGACC
* * *
86620858 CAAATTCTAAGAGATTGCTTGTAAGTCAAGTTAAA
1 CAAAATCTAAGAGATTACTTGCAAGTCAAGTTAAA
*
86620893 CAAAATCTAAGAGATTACTTGCAAGTCAAGTTAGA
1 CAAAATCTAAGAGATTACTTGCAAGTCAAGTTAAA
86620928 CAAAAT
1 CAAAAT
86620934 ATAGCTTCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (35 bp):
CAAAATCTAAGAGATTACTTGCAAGTCAAGTTAAA
Found at i:86623240 original size:17 final size:17
Alignment explanation
Indices: 86623218--86623258 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
86623208 CAATGTAAAC
86623218 AATAATGAA-TAAAAAAT
1 AATAAT-AACTAAAAAAT
*
86623235 AATAATAACTGAAAAAT
1 AATAATAACTAAAAAAT
86623252 AA-AATAA
1 AATAATAA
86623259 AATAGAACGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (17 bp):
AATAATAACTAAAAAAT
Found at i:86626218 original size:27 final size:27
Alignment explanation
Indices: 86626188--86626365 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86626178 ATATTGAGTC
* * * *
86626188 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86626215 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86626242 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86626270 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86626297 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86626324 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86626351 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86626366 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86626327 original size:82 final size:81
Alignment explanation
Indices: 86626209--86626364 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86626199 TGCTATATAA
* *
86626209 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86626274 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86626291 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86626355 CACTTAGTGC
65 CACTTAGTGC
86626365 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:86634413 original size:27 final size:27
Alignment explanation
Indices: 86634383--86634560 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86634373 ATATTGAGTC
* * * *
86634383 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86634410 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86634437 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86634465 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86634492 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86634519 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86634546 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86634561 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86634522 original size:82 final size:81
Alignment explanation
Indices: 86634404--86634559 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86634394 TGCTATATAA
* *
86634404 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86634469 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86634486 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86634550 CACTTAGTGC
65 CACTTAGTGC
86634560 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:86636823 original size:21 final size:21
Alignment explanation
Indices: 86636797--86636838 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
86636787 GATATATAAT
86636797 TTTTATAATATAAAA-TAAATA
1 TTTTAT-ATATAAAATTAAATA
*
86636818 TTTTATATTTAAAATTAAATA
1 TTTTATATATAAAATTAAATA
86636839 AAATAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTTATATATAAAATTAAATA
Found at i:86641504 original size:28 final size:28
Alignment explanation
Indices: 86641464--86641519 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
86641454 CAGAGAGATA
86641464 GTTAGTCATGACCAAACAAGCAAGACAC
1 GTTAGTCATGACCAAACAAGCAAGACAC
86641492 GTTAGTCATGACCAAACAAGCAAGACAC
1 GTTAGTCATGACCAAACAAGCAAGACAC
86641520 AAATTGTCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.25, G:0.18, T:0.14
Consensus pattern (28 bp):
GTTAGTCATGACCAAACAAGCAAGACAC
Found at i:86644085 original size:47 final size:47
Alignment explanation
Indices: 86644026--86644591 Score: 857
Period size: 47 Copynumber: 12.1 Consensus size: 47
86644016 TATCACATTT
* * * *
86644026 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
86644071 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
86644118 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
86644165 ATATACATGTTTACTTTCATCACATTGGCCATTCGGCTTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
86644212 ATATACATGTTCACTTTCATCACATTGGCCATTCGGTCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
86644259 ATACACACGTTCACTTTCATCACATTGGCCATTCGGCCTTACCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
86644306 ATACACACGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
86644353 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
86644400 ATACACCTATTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
86644447 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
86644494 ATACACCTATTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
86644541 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTA-TCACAC
86644589 ATA
1 ATA
86644592 TACACTTTCA
Statistics
Matches: 476, Mismatches: 42, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
45 6 0.01
46 1 0.00
47 460 0.97
48 9 0.02
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:86644187 original size:25 final size:25
Alignment explanation
Indices: 86644158--86644235 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
86644148 ATTCGGCCTT
*
86644158 ATCACACATATACATGTTTACTTTC
1 ATCACACATATACATGTTCACTTTC
* *** *
86644183 ATCACA-TTGGCCA--TTCGGCTTT-
1 ATCACACATATACATGTTC-ACTTTC
86644205 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
86644230 ATCACA
1 ATCACA
86644236 TTGGCCATTC
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.22
23 7 0.19
24 7 0.19
25 15 0.41
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (25 bp):
ATCACACATATACATGTTCACTTTC
Found at i:86648870 original size:40 final size:40
Alignment explanation
Indices: 86648813--86649275 Score: 709
Period size: 40 Copynumber: 11.6 Consensus size: 40
86648803 CCAGCATGAT
* *
86648813 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
86648853 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
86648893 TGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
86648933 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
86648973 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
86649013 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
86649053 TGCTCTTCGGGACTTAGCCCGGATTTATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
86649093 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
86649133 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
86649173 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
86649214 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
86649254 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
86649276 CATCATTCGA
Statistics
Matches: 389, Mismatches: 29, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
39 3 0.01
40 365 0.94
41 21 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:86648915 original size:23 final size:23
Alignment explanation
Indices: 86648884--86648990 Score: 67
Period size: 23 Copynumber: 5.2 Consensus size: 23
86648874 GATACATCAC
86648884 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * *
86648907 TAGCCCGAAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
86648924 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
86648947 TAGCCCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
86648964 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
86648987 TAGC
1 TAGC
86648991 CCGGATATAT
Statistics
Matches: 58, Mismatches: 14, Indels: 24
0.60 0.15 0.25
Matches are distributed among these distances:
17 17 0.29
18 6 0.10
19 4 0.07
21 4 0.07
22 6 0.10
23 21 0.36
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:86650728 original size:47 final size:47
Alignment explanation
Indices: 86650669--86651234 Score: 857
Period size: 47 Copynumber: 12.1 Consensus size: 47
86650659 TATCACATTT
* * * *
86650669 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
86650714 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
86650761 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
86650808 ATATACATGTTTACTTTCATCACATTGGCCATTCGGCTTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
86650855 ATATACATGTTCACTTTCATCACATTGGCCATTCGGTCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
86650902 ATACACACGTTCACTTTCATCACATTGGCCATTCGGCCTTACCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
86650949 ATACACACGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
86650996 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
86651043 ATACACCTATTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
86651090 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
86651137 ATACACCTATTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
86651184 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTA-TCACAC
86651232 ATA
1 ATA
86651235 TACACTTTCA
Statistics
Matches: 476, Mismatches: 42, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
45 6 0.01
46 1 0.00
47 460 0.97
48 9 0.02
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:86650830 original size:25 final size:25
Alignment explanation
Indices: 86650801--86650878 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
86650791 ATTCGGCCTT
*
86650801 ATCACACATATACATGTTTACTTTC
1 ATCACACATATACATGTTCACTTTC
* *** *
86650826 ATCACA-TTGGCCA--TTCGGCTTT-
1 ATCACACATATACATGTTC-ACTTTC
86650848 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
86650873 ATCACA
1 ATCACA
86650879 TTGGCCATTC
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.22
23 7 0.19
24 7 0.19
25 15 0.41
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (25 bp):
ATCACACATATACATGTTCACTTTC
Found at i:86658269 original size:24 final size:24
Alignment explanation
Indices: 86658237--86658287 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
86658227 TTTACTTTAA
86658237 GTTATCCGAACTTACCTGGTATTC
1 GTTATCCGAACTTACCTGGTATTC
86658261 GTTATCCGAACTTACCTGGTATTC
1 GTTATCCGAACTTACCTGGTATTC
86658285 GTT
1 GTT
86658288 TCGGTGTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.39
Consensus pattern (24 bp):
GTTATCCGAACTTACCTGGTATTC
Found at i:86664616 original size:11 final size:11
Alignment explanation
Indices: 86664580--86664635 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
86664570 CATGGTATGT
86664580 ATGATATGCAC
1 ATGATATGCAC
* *
86664591 ATGACATG--T
1 ATGATATGCAC
86664600 ATGATATGCAC
1 ATGATATGCAC
*
86664611 ATGATATG--T
1 ATGATATGCAC
86664620 ATGATATGCAC
1 ATGATATGCAC
86664631 ATGAT
1 ATGAT
86664636 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:86664635 original size:20 final size:20
Alignment explanation
Indices: 86664569--86664635 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
86664559 ATTTTGATAA
*
86664569 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
86664589 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
86664609 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86664629 ACATGAT
1 ACATGAT
86664636 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:86664769 original size:24 final size:23
Alignment explanation
Indices: 86664686--86664781 Score: 156
Period size: 23 Copynumber: 4.1 Consensus size: 23
86664676 AGGAAGTGAA
86664686 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
86664709 AAAGGACTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
86664732 AAAAGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
86664755 AGAAGGGCTTTTGCCCCAGTTATT
1 A-AAGGGCTTATGCCCCAGTTATT
86664779 AAA
1 AAA
86664782 AGAGGCTAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
23 46 0.69
24 21 0.31
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:86664772 original size:47 final size:46
Alignment explanation
Indices: 86664685--86664783 Score: 162
Period size: 47 Copynumber: 2.1 Consensus size: 46
86664675 GAGGAAGTGA
86664685 AAAAGGGCTTATGCCCCAGTTATTAAAGGACTTATGCCCCAGTTATT
1 AAAA-GGCTTATGCCCCAGTTATTAAAGGACTTATGCCCCAGTTATT
* *
86664732 AAAAGGCTTATGCCCCAGTTATTAGAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGCTTATGCCCCAGTTATTA-AAGGACTTATGCCCCAGTTATT
86664779 AAAAG
1 AAAAG
86664784 AGGCTAGGCC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 20 0.41
47 29 0.59
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (46 bp):
AAAAGGCTTATGCCCCAGTTATTAAAGGACTTATGCCCCAGTTATT
Found at i:86665031 original size:31 final size:31
Alignment explanation
Indices: 86664996--86665059 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86664986 CATTTATAGT
86664996 AAAGGCATCGGCCCAGTAATATGAAATATGA
1 AAAGGCATCGGCCCAGTAATATGAAATATGA
* **
86665027 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCATCGGCCCAGTAATATGAAATATGA
86665058 AA
1 AA
86665060 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCATCGGCCCAGTAATATGAAATATGA
Found at i:86671341 original size:37 final size:36
Alignment explanation
Indices: 86671278--86671353 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
86671268 GATAATCACT
*
86671278 TTAATATTAAATTAATAAAATACTATTAAGATAAGTA
1 TTAATATTAAATTAATAAAATACTATTAAAATAAG-A
*
86671315 TTAA-ATTAAATTTAATATTAAT-CTATTAAAATAAGA
1 TTAATATTAAA-TTAATA-AAATACTATTAAAATAAGA
86671351 TTA
1 TTA
86671354 TTTTTGGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 10 0.29
37 22 0.63
38 3 0.09
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.41
Consensus pattern (36 bp):
TTAATATTAAATTAATAAAATACTATTAAAATAAGA
Found at i:86672969 original size:15 final size:15
Alignment explanation
Indices: 86672949--86672978 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
86672939 CTATTCATGC
86672949 AAAATACAAAAGACA
1 AAAATACAAAAGACA
86672964 AAAATACAAAAGACA
1 AAAATACAAAAGACA
86672979 TAATAGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.13, G:0.07, T:0.07
Consensus pattern (15 bp):
AAAATACAAAAGACA
Found at i:86693773 original size:40 final size:40
Alignment explanation
Indices: 86693718--86693892 Score: 237
Period size: 40 Copynumber: 4.4 Consensus size: 40
86693708 ATGATAACCA
*
86693718 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
86693758 GGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATTTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
86693798 GGCTAAGTCCCGAAGGCAATTGTGCAAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
86693838 GGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
**
86693877 GGCTAAACCCCGAAGG
1 GGCTAAGTCCCGAAGG
86693893 TACTTGGTTG
Statistics
Matches: 121, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
39 16 0.13
40 105 0.87
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:86695377 original size:29 final size:29
Alignment explanation
Indices: 86695319--86695378 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
86695309 AGACCTATAA
86695319 GATATTTCCCATATTGCATGGCCCTAATG
1 GATATTTCCCATATTGCATGGCCCTAATG
* *
86695348 GATATTTCCCATGTTGCATGGCCCTGATG
1 GATATTTCCCATATTGCATGGCCCTAATG
86695377 GA
1 GA
86695379 CTCCCACTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (29 bp):
GATATTTCCCATATTGCATGGCCCTAATG
Found at i:86698685 original size:18 final size:19
Alignment explanation
Indices: 86698664--86698700 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
86698654 TTGCAATTTA
*
86698664 AATTTTT-ATTTTTTTTCT
1 AATTTTTCATTTATTTTCT
86698682 AATTTTTCATTTATTTTCT
1 AATTTTTCATTTATTTTCT
86698701 TCTAACAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (19 bp):
AATTTTTCATTTATTTTCT
Found at i:86705054 original size:40 final size:40
Alignment explanation
Indices: 86704961--86705185 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
86704951 GCTCCTCGTT
* * * * *
86704961 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
86705001 C-AATGCCTTCGGGACTTAACCCGGATTTAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
*
86705040 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
86705080 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
** * * *
86705120 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-ATC-TCGCA
*
86705161 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
86705186 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 38 0.24
40 105 0.66
41 16 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:86705194 original size:41 final size:41
Alignment explanation
Indices: 86705117--86705194 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
86705107 TTTGTATCTC
* * *
86705117 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
86705158 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
86705195 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:86721847 original size:14 final size:14
Alignment explanation
Indices: 86721800--86721839 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
86721790 AATCAATCGA
86721800 ATTTTCCCAAAACT
1 ATTTTCCCAAAACT
*
86721814 ATTTTCCCAAAAGT
1 ATTTTCCCAAAACT
86721828 ATTTTCCCAAAA
1 ATTTTCCCAAAA
86721840 TTTCTTTCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.35
Consensus pattern (14 bp):
ATTTTCCCAAAACT
Found at i:86723669 original size:43 final size:41
Alignment explanation
Indices: 86723557--86723670 Score: 113
Period size: 41 Copynumber: 2.7 Consensus size: 41
86723547 TATGTGGTTA
* * ** *
86723557 CATGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATT
1 CATGTAAGACCACGTCTGGGACATTGGCATCGTATGAGATG
* * *
86723598 CGTGTAAGACC-CTGTTTGGGACAGTGGCATCGTTATGAGATAG
1 CATGTAAGACCAC-GTCTGGGACATTGGCATCG-TATGAGAT-G
*
86723641 CATGTAAGACCACGTCTGAGACATTGGCAT
1 CATGTAAGACCACGTCTGGGACATTGGCAT
86723671 TGTACAATAT
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
41 26 0.46
42 6 0.11
43 24 0.42
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (41 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGTATGAGATG
Found at i:86725851 original size:21 final size:20
Alignment explanation
Indices: 86725827--86725865 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
86725817 CCGTGTTGAT
86725827 TTCGTACCTTGGCCCATTTTC
1 TTCGT-CCTTGGCCCATTTTC
**
86725848 TTCGTTTTTGGCCCATTT
1 TTCGTCCTTGGCCCATTT
86725866 CTCATTCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.08, C:0.28, G:0.15, T:0.49
Consensus pattern (20 bp):
TTCGTCCTTGGCCCATTTTC
Found at i:86733035 original size:27 final size:27
Alignment explanation
Indices: 86733004--86733181 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86732994 TAAATTGTAC
86733004 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86733031 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86733057 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86733085 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86733113 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86733140 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86733167 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86733182 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86733118 original size:82 final size:81
Alignment explanation
Indices: 86733005--86733160 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86732995 AAATTGTACA
* *
86733005 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86733069 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
86733086 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86733151 TGCGAGTTGA
65 TGCGAATTGA
86733161 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86733172 original size:82 final size:81
Alignment explanation
Indices: 86733001--86733181 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
86732991 GATTAAATTG
* *
86733001 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86733066 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86733082 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86733146 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86733164 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86733182 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86741077 original size:27 final size:27
Alignment explanation
Indices: 86741046--86741221 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
86741036 TAAATTGTAC
86741046 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86741073 TGCACTAAGTGTGCGAAATGAATGATG-
1 AGCACTAAGTGTGCGATTTGACT-ATGT
* * *
86741100 A-CACTAAGTGTGCGA-ATGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86741125 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86741153 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86741180 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86741207 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86741222 GACTCAATAT
Statistics
Matches: 126, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
24 3 0.02
25 4 0.03
26 28 0.22
27 66 0.52
28 25 0.20
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86743956 original size:44 final size:45
Alignment explanation
Indices: 86743889--86744002 Score: 137
Period size: 44 Copynumber: 2.5 Consensus size: 45
86743879 TCCGAGGCTC
86743889 CACACATCCAAAGCACAAGGTGCCAAATGC-TGCTCGAGGCT-CCC-T
1 CACAC-TCC-AAGCACAAGGTGCC-AATGCTTGCTCGAGGCTGCCCGT
*
86743934 GCACACTCCAAGCACAATGTGCCAATGCTTGCTCGAGGCTGCCCGT
1 -CACACTCCAAGCACAAGGTGCCAATGCTTGCTCGAGGCTGCCCGT
86743980 CACA-TCCAAGGCACCAAGGTGCC
1 CACACTCCAA-GCA-CAAGGTGCC
86744003 GATGGTGCCC
Statistics
Matches: 61, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
43 5 0.08
44 29 0.48
45 13 0.21
46 14 0.23
ACGTcount: A:0.26, C:0.36, G:0.22, T:0.16
Consensus pattern (45 bp):
CACACTCCAAGCACAAGGTGCCAATGCTTGCTCGAGGCTGCCCGT
Found at i:86744136 original size:45 final size:44
Alignment explanation
Indices: 86744079--86744262 Score: 144
Period size: 45 Copynumber: 4.4 Consensus size: 44
86744069 TCCAAGCACC
*
86744079 AAAGG-TGCCGATGGTGCCGAGGTTCTCTCACGAATC-AAGGCCT
1 AAAGGTTGCCGATGGTGCCGAGGTTCTCGCACG-ATCAAAGGCCT
*
86744122 AAAGGTTGCCCGAT-GTCTCCGAGGTTCTCGCACGATCAAAGGCCT
1 AAAGGTTG-CCGATGGT-GCCGAGGTTCTCGCACGATCAAAGGCCT
** * *
86744167 -CCGGTTGCCGATGGTGCCGAGG-TC-CGCACAGACCAAGGGCCT
1 AAAGGTTGCCGATGGTGCCGAGGTTCTCGCAC-GATCAAAGGCCT
* * *
86744209 --AGGTTGCTGATGGTGCCCGAGGCTC-CGCAC-ATCCAAGG-CT
1 AAAGGTTGCCGATGGTG-CCGAGGTTCTCGCACGATCAAAGGCCT
86744249 --AGG-TGCCGATGGTG
1 AAAGGTTGCCGATGGTG
86744263 GCTGAGGCCC
Statistics
Matches: 120, Mismatches: 13, Indels: 20
0.78 0.08 0.13
Matches are distributed among these distances:
39 10 0.08
40 5 0.04
41 23 0.19
42 18 0.15
43 23 0.19
44 14 0.12
45 27 0.22
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.20
Consensus pattern (44 bp):
AAAGGTTGCCGATGGTGCCGAGGTTCTCGCACGATCAAAGGCCT
Found at i:86744230 original size:42 final size:42
Alignment explanation
Indices: 86743999--86745302 Score: 452
Period size: 42 Copynumber: 30.3 Consensus size: 42
86743989 GGCACCAAGG
* * *
86743999 TGCCGATGGTGCCCTAAGGCTCCCGCACGACCAAGGGTCGAGGT
1 TGCCGATGGTGCCC-GAGGCT-CCGCACGACCAAGGGCCTAGGT
** ** *
86744043 TGCCGATGG-GTTCGAGGCTCC-CGAC-ATCCAAGCACCAAAGG-
1 TGCCGATGGTGCCCGAGGCTCCGC-ACGA-CCAAGGGCC-TAGGT
* * *
86744084 TGCCGATGGTG-CCGAGGTTCTCTCACGAATCAA-GGCCTAAAGGT
1 TGCCGATGGTGCCCGAGGCTC-CGCACG-ACCAAGGGCCT--AGGT
* * * *
86744128 TGCCCGAT-GT-CTCCGAGGTTCTCGCACGATCAAAGGCCTCCGGT
1 TG-CCGATGGTGC-CCGAGGCTC-CGCACGACCAAGGGCCT-AGGT
86744172 TGCCGATGGTG-CCGAGG-TCCGCACAGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCGCAC-GACCAAGGGCCTAGGT
*
86744213 TGCTGATGGTGCCCGAGGCTCCGCAC-ATCCAA-GG-CTAGG-
1 TGCCGATGGTGCCCGAGGCTCCGCACGA-CCAAGGGCCTAGGT
* * *
86744252 TGCCGATGGTGGCTGAGGCCCCGCACGACCAAGGGCCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCGCACGACCAAGGG-CCTAGGT
* *
86744294 TGCCGATGAT-CCCGCAGGCTGCCTCGCACGA-CAAGGGCCTAAGT
1 TGCCGATGGTGCCCG-AGGCT--C-CGCACGACCAAGGGCCTAGGT
* *
86744338 TACCGATGGTGCCC--GGCTCCGCACTGACC-AGGGGCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCGCAC-GACCAAGGGCCTAGGT
* **
86744378 TGCCTGATGGTGCCCCGAGGCTCCCGCAC-TCCAAGCACCTA-G-
1 TGCC-GATGGTG-CCCGAGGCT-CCGCACGACCAAGGGCCTAGGT
* * * * *
86744420 TGCCCGATGGGGGCCGAAGCTTCC-CTGACAAACCAGGGGCCTAGGT
1 TG-CCGATGGTGCCCGAGGC-TCCGC--AC-GACCAAGGGCCTAGGT
* * * **
86744466 GGTCGATGGTGGGGCCCCCCGAGGCTCCGCCCACGAGCAAACCGCCTAGGT
1 TGCCGATGGT---G---CCCGAGGCTCCG--CACGA-CCAAGGGCCTAGGT
** * *
86744517 AACCGATGGTGGGCCCGAGGC-CCCCACGCCACAAGGGCCCCTAGGGT
1 TGCCGATGGT--GCCCGAGGCTCCGCACGAC-CAAGGG--CCTA-GGT
86744564 T-CTCG-TGGTGGCCCGA-GCTCCTTCGGCACGACCAAGGGCCTAGG-
1 TGC-CGATGGT-GCCCGAGGCT-C--C-GCACGACCAAGGGCCTAGGT
* * *
86744608 T-CCGATGGTGGCCCCGAGGCCCTCCTTCGCCCAACC-AGGCCCCTAAGG-
1 TGCCGATGGT-G-CCCGAGG--CT-C--CGCACGACCAAGG-GCCT-AGGT
* * * *
86744656 T-ACGATGGT--ACGAGGCTTCCCGCCGCGAACCAGGGGCCCTAGGTT
1 TGCCGATGGTGCCCGAGGC-T-CCG-CACG-ACCAAGGG-CCTAGG-T
* * *
86744701 TGCCCTGATGGTTACTCGATGGTTTCCGGCGACGACCAAGGGGCCTAGGT
1 TG-CC-GATGG-TGCCCGA-GG-CTCC-GC-ACGACCAA-GGGCCTAGGT
* * * **
86744751 TACCGAT-GTGCCAGAGGCTCC-CACACATCCAAGCACC-AGG-
1 TGCCGATGGTGCCCGAGGCTCCGCAC-GA-CCAAGGGCCTAGGT
* * *
86744791 TGCCGGTGGTGCCCGAGGCTCCCGCAACAACC-AGGGCTTAGGT
1 TGCCGATGGTGCCCGAGGCT-CCGC-ACGACCAAGGGCCTAGGT
*
86744834 TGCCGATGGTG-CCGAGGCTCCCGCAC-ATCCAAGGGCCTA-GA
1 TGCCGATGGTGCCCGAGGCT-CCGCACGA-CCAAGGGCCTAGGT
* * * * *
86744875 TACCGATGGTGGCTGAAGCTCCCGCACGA-CAAGGGCCTA-AT
1 TGCCGATGGTGCCCGAGGCT-CCGCACGACCAAGGGCCTAGGT
* * *
86744916 T-CCGATGCT-CTCGAGGCTTCGTCGCCCGA-CAA-GGCCTAGGT
1 TGCCGATGGTGCCCGAGGC-TC--CGCACGACCAAGGGCCTAGGT
* *
86744957 TACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCCTAGGT
1 TGCCGATGGTGCCCGAGGCT-CCGCACGACCAAGGG-CCTAGGT
* **
86745001 TGCCGATGGTGCCCGAGGCTCTAGCAC--CTCAAGCACC-ATGG-
1 TGCCGATGGTGCCCGAGGCTC-CGCACGAC-CAAGGGCCTA-GGT
* **
86745042 TACCGATGGTGCCTTAGGCTCCCGCACGACCCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCT-CCGCACGA-CCAAGGGCCTAGGT
*
86745086 T-CCGACTGGTTGCCTGAGGCCTCC-CA-GACCAA-GGCCTAGGT
1 TGCCGA-TGG-TGCCCGAGG-CTCCGCACGACCAAGGGCCTAGGT
** * * * *
86745127 TGCCGATGGT-ATCGAGGCTCCCGCGCCAACCAGGGGCCTAAGT
1 TGCCGATGGTGCCCGAGGCT-CCGC-ACGACCAAGGGCCTAGGT
** *
86745170 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCT-CCGCACGA-CCAAGGGCCTAGGT
* * *
86745212 TGCCAATAGTGCCCGAGGCTTCCGCACGACCAAGGGGCTAGG-
1 TGCCGATGGTGCCCGAGGC-TCCGCACGACCAAGGGCCTAGGT
* * *
86745254 TGCCGAAGGTGCCCGAGGCTCC-CAC-A-CAACGTCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCGCACGACCAAGGGCCTAGGT
86745293 TG-CGATGGTG
1 TGCCGATGGTG
86745303 TCTTGGCTCC
Statistics
Matches: 969, Mismatches: 154, Indels: 280
0.69 0.11 0.20
Matches are distributed among these distances:
38 18 0.02
39 45 0.05
40 51 0.05
41 167 0.17
42 197 0.20
43 123 0.13
44 140 0.14
45 75 0.08
46 27 0.03
47 24 0.02
48 34 0.04
49 8 0.01
50 9 0.01
51 41 0.04
52 9 0.01
53 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.16
Consensus pattern (42 bp):
TGCCGATGGTGCCCGAGGCTCCGCACGACCAAGGGCCTAGGT
Found at i:86745054 original size:85 final size:85
Alignment explanation
Indices: 86743980--86745275 Score: 448
Period size: 85 Copynumber: 15.0 Consensus size: 85
86743970 GGCTGCCCGT
* * * * * *
86743980 CACATCCAAGGCACCAAGGTGCCGATGGTGCCCTAAGGCTCCCGCACGACCAAGGGTCGAGGTTG
1 CACATCCAA-GCACCTAGGTACCGATGGTGCCC-GAGGCTCCCGCACGACCAGGGGCCTAGGTTG
** *
86744045 CCGATGG-GTTCGAGGCTCCCG
64 CCGATGGTGCCCGAGGCTCCAG
* * * * * * *
86744066 -ACATCCAAGCACCAAAGGTGCCGATGGTG-CCGAGGTTCTCTCACGAATCA-AGGCCTAAAGGT
1 CACATCCAAGCACC-TAGGTACCGATGGTGCCCGAGGCTCCCGCACG-ACCAGGGGCCT--AGGT
*
86744128 TGCCCGAT-GT-CTCCGAGGTTCTC-G
62 TG-CCGATGGTGC-CCGAGGCTC-CAG
* * * * *
86744152 CACGATCAAAG-GCCTCCGGTTGCCGATGGTG-CCGAGG-T-CCGCACAGACCAAGGGCCTAGGT
1 CAC-ATCCAAGCACCT-AGG-TACCGATGGTGCCCGAGGCTCCCGCAC-GACCAGGGGCCTAGGT
*
86744213 TGCTGATGGTGCCCGAGGCTCC-G
62 TGCCGATGGTGCCCGAGGCTCCAG
* * * * *
86744236 CACATCCAAG--GCTAGGTGCCGATGGTGGCTGAGGC-CCCGCACGACCAAGGGCCCTAGG-TGC
1 CACATCCAAGCACCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGGCCTAGGTTGC
* *
86744297 CGATGAT-CCCGCAGGCTGCCTCG
65 CGATGGTGCCCG-AGGCT-CC-AG
** *
86744320 CACGA--CAAGGGCCTAAGTTACCGATGGTGCCC--GGCT-CCGCACTGACCAGGGG-CTAGGTT
1 CAC-ATCCAAGCACCT-AGGTACCGATGGTGCCCGAGGCTCCCGCAC-GACCAGGGGCCTAGGTT
*
86744379 GCCTGATGGTGCCCCGAGGCTCCCG
63 GCC-GATGGTG-CCCGAGGCTCCAG
* * * * *
86744404 CAC-TCCAAGCACCTA-GTGCCCGATGGGGGCCGAAGCTTCCCTG-ACAAACCAGGGGCCTAGGT
1 CACATCCAAGCACCTAGGT-ACCGATGGTGCCCGAGGC-TCCC-GCAC-GACCAGGGGCCTAGGT
* *
86744466 GGTCGATGGTGGGGCCCCCCGAGGCTCC-G
62 TGCCGATGGT---G---CCCGAGGCTCCAG
* * * * * *
86744495 CCCACGAGCAAACCGCCTAGGTAACCGATGGTGGGCCCGAGGC-CCC-CACGCCACAAGGGCCCC
1 --CAC-ATCCAAGCACCTAGGT-ACCGATGGT--GCCCGAGGCTCCCGCACG--ACCAGGG-GCC
*
86744558 TAGGGTT-CTCG-TGGTGGCCCGA-GCTCCTTCGG
57 TA-GGTTGC-CGATGGT-GCCCGAGGCT-C--CAG
** * * **
86744590 CACGA-CCAAGGGCCTAGGT-CCGATGGTGGCCCCGAGGCCCTCCTTCGCCCAACCAGGCCCCTA
1 CAC-ATCCAAGCACCTAGGTACCGATGGT-G-CCCGAGG--CTCC--CGCACGACCAGGGGCCT-
* * *
86744653 AGG-T-ACGATGGT--ACGAGGCTTCCCG
58 AGGTTGCCGATGGTGCCCGAGGC-TCCAG
* * * * * * * *
86744678 CCGCGAACCAGGGGC-CCTAGGTTTGCCCTGATGGTTACTCGATGGTTTCCGGCGACGACCAAGG
1 -CAC-ATCCA--AGCACCTAGG--T-ACC-GATGG-TGCCCGA-GG-CTCCCGC-ACGACC-AGG
* *
86744742 GGCCTAGGTTACCGAT-GTGCCAGAGGCTCCCA-
53 GGCCTAGGTTGCCGATGGTGCCCGAGGCT-CCAG
* * * *
86744774 CACATCCAAGCACC-AGGTGCCGGTGGTGCCCGAGGCTCCCGCAACAACCA-GGGCTTAGGTTGC
1 CACATCCAAGCACCTAGGTACCGATGGTGCCCGAGGCTCCCGC-ACGACCAGGGGCCTAGGTTGC
*
86744837 CGATGGTG-CCGAGGCTCCCG
65 CGATGGTGCCCGAGGCTCCAG
** * * * * * *
86744857 CACATCCAAGGGCCTAGATACCGATGGTGGCTGAAGCTCCCGCACGA-CAAGGGCCTA-ATT-CC
1 CACATCCAAGCACCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
* *
86744919 GATGCT-CTCGAGGCTTCGTC-G
66 GATGGTGCCCGAGGC-TC--CAG
* *
86744940 CCCGA--CAAG-GCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCCTAGGTT
1 CAC-ATCCAAGCACCTAGG-TACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG-CCTAGGTT
*
86745002 GCCGATGGTGCCCGAGGCTCTAG
63 GCCGATGGTGCCCGAGGCTCCAG
* ** *
86745025 CACCT-CAAGCACC-ATGGTACCGATGGTGCCTTAGGCTCCCGCACGACCCAAGGGCCTAGGTT-
1 CACATCCAAGCACCTA-GGTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTG
*
86745087 CCGACTGGTTGCCTGAGGCCTCC--
64 CCGA-TGG-TGCCCGAGG-CTCCAG
* * * ** * * *
86745110 CAGA-CCAAG-GCCTAGGTTGCCGATGGT-ATCGAGGCTCCCGCGCCAACCAGGGGCCTAAGTTG
1 CACATCCAAGCACCTAGG-TACCGATGGTGCCCGAGGCTCCCGC-ACGACCAGGGGCCTAGGTTG
*
86745172 CCGATGGTGCCCGAGGCTCCCG
64 CCGATGGTGCCCGAGGCTCCAG
* * * * *
86745194 CACATCCAAGCACCAAGGTGCCAATAGTGCCCGAGGCTTCCGCACGACCAAGGGG-CTAGG-TGC
1 CACATCCAAGCACCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGGCCTAGGTTGC
*
86745257 CGAAGGTGCCCGAGGCTCC
65 CGATGGTGCCCGAGGCTCC
86745276 CACACAACGT
Statistics
Matches: 923, Mismatches: 158, Indels: 260
0.69 0.12 0.19
Matches are distributed among these distances:
80 15 0.02
81 43 0.05
82 62 0.07
83 98 0.11
84 142 0.15
85 163 0.18
86 90 0.10
87 51 0.06
88 38 0.04
89 11 0.01
90 23 0.02
91 13 0.01
92 41 0.04
93 21 0.02
94 18 0.02
95 34 0.04
96 32 0.03
97 16 0.02
98 12 0.01
ACGTcount: A:0.19, C:0.34, G:0.32, T:0.16
Consensus pattern (85 bp):
CACATCCAAGCACCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
GATGGTGCCCGAGGCTCCAG
Found at i:86745239 original size:170 final size:166
Alignment explanation
Indices: 86744732--86745302 Score: 538
Period size: 169 Copynumber: 3.4 Consensus size: 166
86744722 GTTTCCGGCG
* * * *
86744732 ACGACCAAGGGGCCTAGGTTACCGAT-GTGCCAGAGG-CTCCCACACATCCAAGCACCAGG-TGC
1 ACGACCAA-GGGCCTAGGTT-CCGATGGTGCCTGAGGCCTCCCAGACA---AGGC-CTAGGTTGC
* * *
86744794 CGGTGGTGCCCGAGGCTCCCGCAACAACCA-GGGCTTAGGTTGCCGATGGTG-CCGAGGCTCCCG
60 CGATGGTGACCGAGGCTCCCGC-ACAACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
** * * * *
86744857 CACATCCAAGGGCCTAGATACCGATGGTGGCTGAAGCTCCCGC
124 CACATCCAAGCACCAAGGTACCGATGGTGCCTGAGGCTCCCGC
* * * *
86744900 ACGA-CAAGGGCCTA-ATTCCGATGCT--CTCGAGGCTTCGTCGCCCGACAAGGCCTAGGTTACC
1 ACGACCAAGGGCCTAGGTTCCGATGGTGCCT-GAGGC--C-TC-CCAGACAAGGCCTAGGTTGCC
* * **
86744961 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCCTAGGTTGCCGATGGTGCCCGAGGCTCTAGC
61 GATGGTGACCGAGGCTCCCGCACAACCAGGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
86745026 ACCT-CAAGCACCATGGTACCGATGGTGCCTTAGGCTCCCGC
125 ACATCCAAGCACCAAGGTACCGATGGTGCCTGAGGCTCCCGC
86745067 ACGACCCAAGGGCCTAGGTTCCGACTGGTTGCCTGAGGCCTCCCAGACCAAGGCCTAGGTTGCCG
1 ACGA-CCAAGGGCCTAGGTTCCGA-TGG-TGCCTGAGGCCTCCCAGA-CAAGGCCTAGGTTGCCG
* * *
86745132 ATGGT-ATCGAGGCTCCCGCGCCAACCAGGGGCCTAAGTTGCCGATGGTGCCCGAGGCTCCCGCA
62 ATGGTGACCGAGGCTCCCGC-ACAACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
* * * * *
86745196 CATCCAAGCACCAAGGTGCCAATAGTGCCCGAGGCTTCCGC
126 CATCCAAGCACCAAGGTACCGATGGTGCCTGAGGCTCCCGC
* * * * * *
86745237 ACGACCAAGGGGCTAGGTGCCGAAGGTGCCCGAGG-CTCCCACACAACGTCCTAGGTTG-CGATG
1 ACGACCAAGGGCCTAGGTTCCGATGGTGCCTGAGGCCTCCCAGACAA-GGCCTAGGTTGCCGATG
86745300 GTG
65 GTG
86745303 TCTTGGCTCC
Statistics
Matches: 333, Mismatches: 47, Indels: 48
0.78 0.11 0.11
Matches are distributed among these distances:
163 1 0.00
164 9 0.03
165 23 0.07
166 53 0.16
167 62 0.19
168 22 0.07
169 80 0.24
170 72 0.22
171 3 0.01
172 1 0.00
173 5 0.02
174 2 0.01
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (166 bp):
ACGACCAAGGGCCTAGGTTCCGATGGTGCCTGAGGCCTCCCAGACAAGGCCTAGGTTGCCGATGG
TGACCGAGGCTCCCGCACAACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCC
AAGCACCAAGGTACCGATGGTGCCTGAGGCTCCCGC
Found at i:86745456 original size:24 final size:25
Alignment explanation
Indices: 86745429--86745475 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
86745419 GATCTGTTTC
*
86745429 CAAAA-GGGAGGGACCGGGATGATT
1 CAAAAGGGGAGGGACCAGGATGATT
86745453 CAAAAGGGGAGGGACCAGGATGA
1 CAAAAGGGGAGGGACCAGGATGA
86745476 CTTGTAGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.36, C:0.13, G:0.43, T:0.09
Consensus pattern (25 bp):
CAAAAGGGGAGGGACCAGGATGATT
Found at i:86749445 original size:48 final size:49
Alignment explanation
Indices: 86749368--86749461 Score: 147
Period size: 48 Copynumber: 1.9 Consensus size: 49
86749358 CGGCCCAAGC
* *
86749368 GTTCTCTTCGCTCAAAAGGCCTAAGTCAG-CTATCTCGCAGCAATTAAG
1 GTTCTCTTCGCTCAAAACGCCTAAGTCAGCCTATCTCGCAACAATTAAG
86749416 GTTC-CTTCGCTCAAAAACGCCTAAGTCAGCCTATCTCGCAACAATT
1 GTTCTCTTCGCTC-AAAACGCCTAAGTCAGCCTATCTCGCAACAATT
86749462 GAGGATTCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
47 8 0.19
48 19 0.45
49 15 0.36
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (49 bp):
GTTCTCTTCGCTCAAAACGCCTAAGTCAGCCTATCTCGCAACAATTAAG
Found at i:86749816 original size:35 final size:35
Alignment explanation
Indices: 86749777--86749848 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
86749767 GTCTAGGATC
*
86749777 GCATATCTTTGAAGATCCCCTTCCATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
* *
86749812 GCATATCTTTGAAGATTACTTTCCATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
86749847 GC
1 GC
86749849 TCCGGAGATG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.36
Consensus pattern (35 bp):
GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
Found at i:86760684 original size:39 final size:40
Alignment explanation
Indices: 86760529--86760773 Score: 243
Period size: 40 Copynumber: 6.5 Consensus size: 40
86760519 AAGCCAAGTA
* * * *
86760529 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
86760568 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
86760608 CTTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
86760648 CCTTCGGGACTTAG-CCGGATATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
86760687 CCTTCGGG----A---C-----TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
86760715 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
86760755 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
86760774 TTATCATCCA
Statistics
Matches: 175, Mismatches: 16, Indels: 28
0.80 0.07 0.13
Matches are distributed among these distances:
28 25 0.14
32 1 0.01
33 1 0.01
35 2 0.01
39 43 0.25
40 102 0.58
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:86760687 original size:79 final size:80
Alignment explanation
Indices: 86760529--86760772 Score: 232
Period size: 79 Copynumber: 3.2 Consensus size: 80
86760519 AAGCCAAGTA
* * * * *
86760529 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGAATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
*
86760593 TAACTCGCACCAATG
66 TAACTCGCACAAATG
* *
86760608 CTTTCGGGACTTAGCCCGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATA
1 CCTTCGGGACTTAGCCCGAATATAGCT-ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATA
*
86760671 GTAACTCGGACAAATG
65 GTAACTCGCACAAATG
* *
86760687 CCTTCGGGAC-TA----G----TA---ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAAACTA
1 CCTTCGGGACTTAGCCCGAATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TA
* * *
86760739 GTCACTAGCGCAAATG
65 GTAACTCGCACAAATG
86760755 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
86760773 GTTATCATCC
Statistics
Matches: 141, Mismatches: 15, Indels: 24
0.78 0.08 0.13
Matches are distributed among these distances:
67 30 0.21
68 26 0.18
69 2 0.01
70 2 0.01
73 1 0.01
74 1 0.01
78 2 0.01
79 44 0.31
80 33 0.23
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGAATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:86760701 original size:28 final size:28
Alignment explanation
Indices: 86760669--86760725 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
86760659 TAGCCGGATA
*
86760669 TAGTAACTCGGACAAATGCCTTCGGGAC
1 TAGTAACTCGCACAAATGCCTTCGGGAC
86760697 TAGTAACTCGCACAAATGCCTTCGGGAC
1 TAGTAACTCGCACAAATGCCTTCGGGAC
86760725 T
1 T
86760726 TAGCCCGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (28 bp):
TAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:86768783 original size:40 final size:40
Alignment explanation
Indices: 86768721--86768978 Score: 387
Period size: 40 Copynumber: 6.5 Consensus size: 40
86768711 AAGCCAAGTA
* * * *
86768721 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
86768760 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
86768800 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
86768840 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
86768880 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
86768920 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
86768960 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
86768979 TTATCATCCA
Statistics
Matches: 204, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
39 13 0.06
40 191 0.94
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:86772895 original size:42 final size:42
Alignment explanation
Indices: 86772678--86773521 Score: 887
Period size: 42 Copynumber: 19.9 Consensus size: 42
86772668 CCCTGCTGCT
* * * *
86772678 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * * * * *
86772721 CGAGGCTCCCACAC-ATCCAAGCACCAAGGTACCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
86772763 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCC
* **
86772806 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** *
86772849 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* * *
86772891 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * * *
86772933 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTGTCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* *
86772975 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* *
86773018 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGTCGATGGTGGC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
86773060 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
86773102 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * * *
86773145 CGAAGCTCCTACACGACCAGGGGCCTAGGTGCTGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
** *
86773187 CGAGGCTCCCGCACGACCAAGGGAATAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * *
86773230 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTCTGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* * *
86773272 CGAGGCTCTCGCACGACCAATGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* **
86773314 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-AT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* ** *
86773356 CGAGGTTCCCGTGCGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * * *
86773399 CGAGGCTCCCGCAC-ATCGAAGCACCAAGGTGCCGGTGGTGGC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
*
86773441 CGAGGCTCCCGCACGACCAAGGGGCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* * *
86773483 CGAGGCTCCCGCACGACAAACGTCCTAGGTTGCCGATGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGG
86773522 CATCCAAGGC
Statistics
Matches: 683, Mismatches: 102, Indels: 32
0.84 0.12 0.04
Matches are distributed among these distances:
41 5 0.01
42 423 0.62
43 254 0.37
44 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.34, T:0.16
Consensus pattern (42 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
Found at i:86772919 original size:23 final size:23
Alignment explanation
Indices: 86772893--86772962 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
86772883 ATGGTGCCCG
86772893 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
*** * *
86772916 AGG-T-T-GC-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGCCT
86772935 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
86772958 AGGTT
1 AGGTT
86772963 GTCGATGGTG
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 10 0.30
20 3 0.09
21 2 0.06
22 3 0.09
23 15 0.45
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGCCT
Found at i:86773534 original size:127 final size:128
Alignment explanation
Indices: 86772678--86773521 Score: 935
Period size: 127 Copynumber: 6.6 Consensus size: 128
86772668 CCCTGCTGCT
* * * * *
86772678 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCACAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * * * *
86772741 GCACCAAGG-TACCAATGCTGCTCGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGC
64 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAA-GCGCCTAGGTGCCGATGGTGC
86772805 C
128 C
* **
86772806 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * *
86772870 CACCAAGG-TGCCGATGGTGCCCGAGGTTCTCGCACGAT-CAAG-GCCTAGGTTGCCGATGGTGC
65 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCGCCTAGG-TGCCGATGGTGC
86772932 C
128 C
* * * * *
86772933 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
86772997 GCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAGGTGTCGATGGTGGC
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCGCCTAGGTGCCGATGGTGCC
*
86773060 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * ** * * * *
86773124 GCCTAGGTTGCCGATGGTGGCCGAAGCTCCTACACGA-CCAGGGGCCTAGGTGCTGATGGTGGC
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCGCCTAGGTGCCGATGGTGCC
** * *
86773187 CGAGGCTCCCGCACGACCAAGGGAATAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
86773252 GCCTAGGTT-CTGATGGTGCCCGAGGCTCTCGCACGA-CCAATG-GCCTAGGTTCCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAA-GCGCCTAGGTGCCGATGGTGCC
* ** * ** *
86773314 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ATCGAGGTTCCCGTGCGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * *
86773378 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCAAGGTGCCGGTGGTGGC
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCGCCTAGGTGCCGATGGTGCC
* * *
86773441 CGAGGCTCCCGCACGACCAAGGGGCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACAAACG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
86773505 TCCTAGGTTGCCGATGG
66 GCCTAGGTTGCCGATGG
86773522 CATCCAAGGC
Statistics
Matches: 615, Mismatches: 86, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
126 88 0.14
127 378 0.61
128 146 0.24
129 3 0.00
ACGTcount: A:0.18, C:0.32, G:0.34, T:0.16
Consensus pattern (128 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCGCCTAGGTGCCGATGGTGCC
Found at i:86773562 original size:85 final size:85
Alignment explanation
Indices: 86772678--86773521 Score: 906
Period size: 85 Copynumber: 10.0 Consensus size: 85
86772668 CCCTGCTGCT
* * * * *
86772678 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCACAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * *
86772741 GCACCAAGG-TACCAATGCTGCT
63 GGGCCTAGGTTGCCGATGGTGCC
* *
86772763 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* **
86772827 GGCCGAGGTTGCCGATGGTGTT
64 GGCCTAGGTTGCCGATGGTGCC
** * * * *
86772849 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-G
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
86772912 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGGTTGCCGATGGTGCC
* * * * *
86772933 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
86772997 GCCTAGGTTACCGATGGTGCC
65 GCCTAGGTTGCCGATGGTGCC
* *
86773018 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGTCGATGGTGGCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
86773082 GCCTAGG-TGCCGATGGTGCC
65 GCCTAGGTTGCCGATGGTGCC
* * * ** *
86773102 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCTCCTACACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
86773167 GCCTAGG-TGCTGATGGTGGC
65 GCCTAGGTTGCCGATGGTGCC
** * *
86773187 CGAGGCTCCCGCACGACCAAGGGAATAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
86773252 GCCTAGGTT-CTGATGGTGCC
65 GCCTAGGTTGCCGATGGTGCC
* * * *
86773272 CGAGGCTCTCGCACGACCAATGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
**
86773337 CCTAGGTTGCCGATGGT-AT
66 CCTAGGTTGCCGATGGTGCC
* ** * *
86773356 CGAGGTTCCCGTGCGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * *
86773420 CACCAAGG-TGCCGGTGGTGGC
64 GGCCTAGGTTGCCGATGGTGCC
* * * *
86773441 CGAGGCTCCCGCACGACCAAGGGGCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACAAACGT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
86773506 CCTAGGTTGCCGATGG
66 CCTAGGTTGCCGATGG
86773522 CATCCAAGGC
Statistics
Matches: 652, Mismatches: 90, Indels: 34
0.84 0.12 0.04
Matches are distributed among these distances:
83 5 0.01
84 209 0.32
85 393 0.60
86 45 0.07
ACGTcount: A:0.18, C:0.32, G:0.34, T:0.16
Consensus pattern (85 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
CCTAGGTTGCCGATGGTGCC
Found at i:86773677 original size:25 final size:25
Alignment explanation
Indices: 86773649--86773696 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
86773639 GATTTTGTTC
**
86773649 CAAAAGGGGAGGGATTGGGATGATT
1 CAAAAGGGGAGGGACCGGGATGATT
86773674 CAAAAGGGGAGGGACCGGGATGA
1 CAAAAGGGGAGGGACCGGGATGA
86773697 CTTGTAGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.08, G:0.46, T:0.12
Consensus pattern (25 bp):
CAAAAGGGGAGGGACCGGGATGATT
Found at i:86783347 original size:15 final size:15
Alignment explanation
Indices: 86783327--86783357 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86783317 GTCATGTAAG
86783327 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
86783342 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
86783357 T
1 T
86783358 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:86783547 original size:17 final size:17
Alignment explanation
Indices: 86783514--86783552 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
86783504 TAAGCTTTTG
86783514 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
86783531 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
86783548 ATTTT
1 ATTTT
86783553 CCACAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:86783879 original size:49 final size:49
Alignment explanation
Indices: 86783807--86783906 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
86783797 GAGCCGTTGA
86783807 TGAGTCGGGCTTTGAGAAGATTGCAAGTGCGACAACTTCAAAAGAAGCG
1 TGAGTCGGGCTTTGAGAAGATTGCAAGTGCGACAACTTCAAAAGAAGCG
86783856 TGAGTCGGGCTTTGAGAAGATTGCAAGTGCGACAACTTCAAAAGAAGCG
1 TGAGTCGGGCTTTGAGAAGATTGCAAGTGCGACAACTTCAAAAGAAGCG
86783905 TG
1 TG
86783907 GGACATTTTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.32, C:0.16, G:0.31, T:0.21
Consensus pattern (49 bp):
TGAGTCGGGCTTTGAGAAGATTGCAAGTGCGACAACTTCAAAAGAAGCG
Found at i:86787387 original size:15 final size:15
Alignment explanation
Indices: 86787367--86787397 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86787357 GTCATGTAAG
86787367 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
86787382 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
86787397 T
1 T
86787398 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:86787587 original size:17 final size:17
Alignment explanation
Indices: 86787554--86787592 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
86787544 TAAGCTTTTG
86787554 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
86787571 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
86787588 ATTTT
1 ATTTT
86787593 CCACATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:86793114 original size:58 final size:59
Alignment explanation
Indices: 86793023--86793143 Score: 172
Period size: 58 Copynumber: 2.1 Consensus size: 59
86793013 GGGAGGGACA
* *
86793023 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* * * * *
86793081 GGGACGATTTATTCATTATTGGGTACCGAACATGTAGCGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
86793140 GGGA
1 GGGA
86793144 TTGGGGTGGG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 48 0.87
59 7 0.13
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:86801167 original size:42 final size:42
Alignment explanation
Indices: 86801065--86801963 Score: 890
Period size: 42 Copynumber: 21.2 Consensus size: 42
86801055 CCCTGCTGCT
* *
86801065 CGAGGCTCCCGCACATCCAA-CGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACATCCAAGCG-CCAAGG-TGCCGATGGTGCC
* * * *
86801108 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCC
* * * *
86801150 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGTTGCT
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCC
*
86801192 CGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACATCCAA-GCGCCAAGGTGCCGATGGTGCC
* * **
86801235 CGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCAC-ATCCAAGCGCCAAGG-TGCCGATGGTGCC
* * * * *
86801278 CGAGGCTCCCGCACATCCAAGCCCCAAGGTGCCAATGCTTCT
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCC
* ** ** *
86801320 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCTAATACTGCT
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCC
*
86801362 CGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACATCCAA-GCGCCAAGGTGCCGATGGTGCC
* * **
86801405 CGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCAC-ATCCAAGCGCCAAGG-TGCCGATGGTGCC
*
86801448 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCC
* * *
86801490 CGAGGTTCTCGCACGAT-CAAG-GCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGCGCCAAGG-TGCCGATGGTGCC
* * *
86801532 CGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTTG-C
1 CGAGGCTCCCGCAC-ATCCAAGCGCCAAGG-TGCCGATGG-TGCC
* *
86801575 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGT-CC
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCC
* * * *
86801616 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGTCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGCGCCAAGG-TGCCGATGGTGCC
*
86801659 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCC
* *
86801701 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGCGCCAAGGTGCCGATGGTGCC
* * * *
86801743 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCAC-ATCCAAGCGCCAAGG-TGCCGATGGTGCC
* * * * * *
86801786 CAAAGCTCCCGCACGA-CCAGGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGCGCCAAGG-TGCCGATGGTGCC
*
86801829 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCC
* * *
86801871 CGAGGCTCCCCCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGCGCCAAGGTGCCGATGGTGCC
* * * * *
86801913 CGAGGCTCTCGCACGA-CTAAGAGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCAC-ATCCAAGCGCCAAGG-TGCCGATGGTGCC
*
86801956 CGAAGCTC
1 CGAGGCTC
86801964 TTACACGACC
Statistics
Matches: 747, Mismatches: 84, Indels: 50
0.85 0.10 0.06
Matches are distributed among these distances:
41 33 0.04
42 380 0.51
43 329 0.44
44 5 0.01
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.15
Consensus pattern (42 bp):
CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCC
Found at i:86801311 original size:170 final size:170
Alignment explanation
Indices: 86801065--86801963 Score: 1106
Period size: 170 Copynumber: 5.3 Consensus size: 170
86801055 CCCTGCTGCT
* *
86801065 CGAGGCTCCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAG
* * * * * *
86801129 CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGTTGCTCG
65 CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCG
86801194 AGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCC
130 AGGCTCCCGCACGA-CCAAGGCACCAAGGTGCCGATGGTGCC
* *
86801235 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
* * * * * ** ** *
86801300 CCCAAGGTGCCAATGCTTCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCTAATACTGCTCGA
66 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
86801365 GGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCC
131 GGCTCCCGCACGA-CCAAGGCACCAAGGTGCCGATGGTGCC
* *
86801405 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
* * * *
86801470 ACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGAT-CAAG-GCCTAGGTTGCCGATGGTGCCC
66 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
** *
86801533 GAGGCTCCCGCACGACC-AGGGGCCTAGGTTGCCGATGGTTG-C
129 GAGGCTCCCGCACGACCAAGGCACCAAGG-TGCCGATGG-TGCC
* *
86801575 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGA-CCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
** * *
86801636 GGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
64 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
* *
86801701 CGAGGCTCCCGCACGACCAAGG-GCCTAGGTGCCGATGGTGCC
128 CGAGGCTCCCGCACGACCAAGGCACCAAGGTGCCGATGGTGCC
* * * * *
86801743 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCAAAGCTCCCGCACGA-CCAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAG
** * *
86801807 GGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCC
65 CACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCC
* * *
86801872 GAGGCTCCCCCACGACCAAGG-GCCTAGGTGCCGATGGTGCC
129 GAGGCTCCCGCACGACCAAGGCACCAAGGTGCCGATGGTGCC
* * * * *
86801913 CGAGGCTCTCGCACGACTAAGAGCCTAGGTTGCCGATGGTGGCCGAAGCTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTC
86801964 TTACACGACC
Statistics
Matches: 663, Mismatches: 50, Indels: 32
0.89 0.07 0.04
Matches are distributed among these distances:
167 2 0.00
168 61 0.09
169 102 0.15
170 492 0.74
171 6 0.01
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.15
Consensus pattern (170 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGCACCAAGGTGCCGATGGTGCC
Found at i:86801425 original size:127 final size:128
Alignment explanation
Indices: 86801063--86801952 Score: 1015
Period size: 127 Copynumber: 7.0 Consensus size: 128
86801053 GCCCCTGCTG
* * *
86801063 CTCGAGGCTCCCGCACATCCAA-CGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCC
1 CTCGAGGCTCCCGCACATCCAAGC-ACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CC
** * * * * * *
86801126 AAGCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAAT-G
63 AAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCGCCAAGGTTGCCGATGG
86801187 TT
127 TT
86801189 GCTCGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCA
1 -CTCGAGGCTCCCGCACATCCAA-GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCA
* ** * * *
86801254 AGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCCCCAAGG-TGCCAATGCT
64 AGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCGCCAAGGTTGCCGATGGT
86801317 T
128 T
** ** *
86801318 CTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCTAATACTGCTCGAGGCTCCCGCAC-ATCCAA
1 CTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* * * *
86801382 GGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTG
65 GG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAAGGTTGCCGATGGT-
86801446 T
128 T
* * *
86801447 -TCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-
1 CTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* * *
86801510 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTT
66 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAAGGTTGCCGATGGTT
** * *
86801573 GC-CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAA
1 -CTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* * *
86801636 GGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTG
65 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCGCCAAGGTTGCCGATGGTT
* ** * *
86801699 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAA
1 CTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* * * * * * * *
86801763 GGGCCTAGGTTGCCGATGGTGGCCAAAGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTG
65 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAAGGTTGCCGATGGTT
* *
86801827 CCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCCCACGACCAAG
1 CTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* * * *
86801892 GGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACTAAGAGCCTAGGTTGCCGATGGT
66 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAAGGTTGCCGATGGT
86801953 GGCCGAAGCT
Statistics
Matches: 671, Mismatches: 70, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
125 1 0.00
126 75 0.11
127 373 0.56
128 217 0.32
129 5 0.01
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.15
Consensus pattern (128 bp):
CTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAAGGTTGCCGATGGTT
Found at i:86808020 original size:177 final size:176
Alignment explanation
Indices: 86807718--86808070 Score: 512
Period size: 177 Copynumber: 2.0 Consensus size: 176
86807708 TTTTTATTGA
* * * *
86807718 AAATTTTTTCTGTTGGCCCAAAAGAAATACAAGAAGCCGAATGAAATATGGCATGATGGCACGGT
1 AAATTTTTTCTGTTGGCCCAAAACAAATACAAGAA--CGAATG-AACATGGCATGACGGCACGGC
* * * *
86807783 AGATAATTGAACAAGTGCCCGGGCAGCCAACAGTTGGGAGCTCGCACTCGCACTACCACGGCCCC
63 AGAAAATTGAACAAGTGCCCGGGCAGCCAACACTTGGGAGCTCGCACCCGCACCACCACGGCCCC
* *
86807848 CGTTGTGCCATGTTTCCCGAGGGGGCGGCATGGCCAAGTGTTTAACTTAG
128 CGTTGTGCCATGTTTCCCG-GGGGCCGGCACGGCCAAGTGTTTAACTTAG
* * *
86807898 AAATTTTTTCTGTTGGCCCAAAACAAATACAAGAA-GTATG-GCATGGCATGGCACGGCATGGCA
1 AAATTTTTTCTGTTGGCCCAAAACAAATACAAGAACGAATGAACATGGCAT-G-ACGGCACGGCA
*
86807961 GAAAATTGAACAAGTGCCCGGGCCGCCAACACTTGGGAGCTCGCACCCGCACCACCACGGCCCCC
64 GAAAATTGAACAAGTGCCCGGGCAGCCAACACTTGGGAGCTCGCACCCGCACCACCACGGCCCCC
86808026 GTTGTGCCATGTTTCCCGGGGGCCGGCACGGCCAAGTGTTTAACT
129 GTTGTGCCATGTTTCCCGGGGGCCGGCACGGCCAAGTGTTTAACT
86808071 AACTCCTTAC
Statistics
Matches: 157, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
175 7 0.04
176 26 0.17
177 90 0.57
180 34 0.22
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (176 bp):
AAATTTTTTCTGTTGGCCCAAAACAAATACAAGAACGAATGAACATGGCATGACGGCACGGCAGA
AAATTGAACAAGTGCCCGGGCAGCCAACACTTGGGAGCTCGCACCCGCACCACCACGGCCCCCGT
TGTGCCATGTTTCCCGGGGGCCGGCACGGCCAAGTGTTTAACTTAG
Found at i:86820209 original size:85 final size:83
Alignment explanation
Indices: 86820092--86820733 Score: 381
Period size: 85 Copynumber: 7.6 Consensus size: 83
86820082 TTTCTTTAGT
* * ** * * * *
86820092 CCGCACATCCGAGCCACCAGGGTGCCCCTGCTGCTCGAGGCACCCGCACATCCAACGTCCTAGGT
1 CCGCACATCCAAG-CACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCAA-GACCAAGGT
86820157 TACCAATAGTGTCCGAGGCTC
64 TACCAAT-GTGTCCGAGGCTC
* *
86820178 CCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-T
1 CCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCAAG-ACCAAGGTT
* *
86820242 GCCAATGCTG-CTCGATGCTC
65 ACCAATG-TGTC-CGAGGCTC
* * *
86820262 CCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCGAGG
1 CCGCACATCCAA-GCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCAA-GACCAAGG
* *
86820326 TTACCGATGGTGTTCGAGGCTC
63 TTACCAAT-GTGTCCGAGGCTC
* * ** * *
86820348 CCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTTGCACGAT-CAAGGCCTAGGTT
1 CCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCAAGACCAAGGTT
** * * *
86820412 GTCGATGGTGCCCGAGGTTC
65 ACCAAT-GTGTCCGAGGCTC
* * * * * * * * *
86820432 TCGCACGAT-CAAGGC-CTAAGTTACCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGGGCCTAG
1 CCGCAC-ATCCAA-GCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCA-AGACCAAG
* * *
86820494 GTTGCCGATGGTGCCCGAGGCTC
62 GTTACCAAT-GTGTCCGAGGCTC
** * * * * * *
86820517 CCGCACATCCAAGGGCCTAGATGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG-
1 CCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCAA-GACCAAGGT
* *
86820580 TGCCGATG-GTCCTGAGGCTC
64 TACCAATGTGTCC-GAGGCTC
* ** * * * * * * *
86820600 TCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCATGA-CCAGGGGCCTAG
1 CCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCA-CATCCA-AGACCAAG
* * *
86820663 GTTGCCGATGGTGCCCGAGGCTC
62 GTTACCAAT-GTGTCCGAGGCTC
* * *
86820686 CCACACATCCAAGCACCAAGGTGCCGATGGTGCCTGAGGCTCCCGCAC
1 CCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCAC
86820734 GACCAAGGGC
Statistics
Matches: 467, Mismatches: 63, Indels: 54
0.80 0.11 0.09
Matches are distributed among these distances:
82 3 0.01
83 27 0.06
84 137 0.29
85 234 0.50
86 62 0.13
87 4 0.01
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.16
Consensus pattern (83 bp):
CCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCAAGACCAAGGTTA
CCAATGTGTCCGAGGCTC
Found at i:86820418 original size:42 final size:42
Alignment explanation
Indices: 86820127--86821206 Score: 937
Period size: 42 Copynumber: 25.5 Consensus size: 42
86820117 CCCTGCTGCT
* * * * * *
86820127 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTACCAATAGTGTC
1 CGAGGCTCCCGCACGA-CCAA-GGCCTAGGTTGCCGATGGTGCC
* * * * *
86820170 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCC
* * * * *
86820212 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCC
* *
86820254 CGATGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG--CCTAGGTTGCCGATGGTGCC
* * **
86820297 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTACCGATGGTGTT
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* *
86820340 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCC
* ** * *
86820382 CGAGGTTCTTGCACGATCAAGGCCTAGGTTGTCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCC
* * * * *
86820424 CGAGGTTCTCGCACGATCAAGGCCTAAGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCC
* *
86820466 CGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* *
86820509 CGAGGCTCCCGCAC-ATCCAAGGGCCTA-GATGCCGATGGTGGC
1 CGAGGCTCCCGCACGA-CCAA-GGCCTAGGTTGCCGATGGTGCC
86820551 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* *
86820592 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * *
86820635 CGAGGTTCCCGCATGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* * *
86820678 CGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCC
* * *
86820720 TGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATTGTGGC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * *
86820762 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* ** * * *
86820805 CGAAGCTCCTACACGACTAGGGGCCTAGG-TGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
** *
86820847 CGAGGCTCCTACACGACCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* **
86820890 CGAGGCTCCCGCACGACCAGGGGCAGAGGTT-CCGATGGTGCC
1 CGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* *
86820932 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTG-CGATGGTGCC
1 CGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* **
86820974 CGAGGCTCTCGCACGACCAATGGCCTAGGTTGCCGATGGT-AT
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
*** * *
86821016 CGAGGCTCCCGCGTAACCAGGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* * *
86821059 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCC
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCC
* *
86821101 CGAGGCTCCCACACGACCAAGGGGCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * * *
86821143 CGAGGCTCCCGCACGACAAACGTCCTAGGTTGCCGATGGCGTC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * *
86821186 CAAGGCTCCAGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
86821207 CAGCAATGTG
Statistics
Matches: 880, Mismatches: 120, Indels: 75
0.82 0.11 0.07
Matches are distributed among these distances:
41 33 0.04
42 522 0.59
43 322 0.37
44 3 0.00
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (42 bp):
CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCC
Found at i:86820504 original size:169 final size:169
Alignment explanation
Indices: 86820127--86821222 Score: 1127
Period size: 169 Copynumber: 6.5 Consensus size: 169
86820117 CCCTGCTGCT
* * * * * *
86820127 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTACCAATAGTGTCCGAGGCTCCCGCACATCCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAG
* * * * * * * *
86820191 CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTC
65 CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTGCCGATGGTGCCC
* * * *
86820255 GATGCTCCCGCAC-ATCCAA-GGCACCAAGGTGCCGATGGTGCC
128 GAGGCTCTCGCACGA-CCAAGGGC-CTAAGTTGCCGATGGTGCC
* * *
86820297 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTACCGATGGTGTTCGAGGCTCCCGCACATCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
* ** * *
86820362 ACCAAGGTGCCGATGGTGCCCGAGGTTCTTGCACGATCAAGGCCTAGGTTGTCGATGGTGCCCGA
66 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGG-TGCCGATGGTGCCCGA
* * *
86820427 GGTTCTCGCACGATCAA-GGCCTAAGTTACCGATGGTGCC
130 GGCTCTCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCC
* * * *
86820466 CGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
* * * * *
86820531 GCCTAGATGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGT-CCTGA
66 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTGCCGATGGTGCCCGA
*
86820595 GGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
130 GGCTCTCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCC
* * * * *
86820635 CGAGGTTCCCGCATGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
* * * *
86820700 ACCAAGGTGCCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATTGTGGCTGA
66 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTGCCGATGGTGCCCGA
* *
86820765 GGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGC
130 GGCTCTCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCC
* ** * * * **
86820805 CGAAGCTCCTACACGACTAGGGGCCTAGG-TGCCGATGGTGGCCGAGGCTCCTACACGA-CCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAG
** * * * ** *
86820868 GGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGGGCAGAGGTTCCGATGGTGCCC
65 CACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTGCCGATGGTGCCC
* *
86820933 GAGGCTCTCGCACGACCAGGGGCCTAGGTTG-CGATGGTGCC
128 GAGGCTCTCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCC
* * * ** * * *
86820974 CGAGGCTCTCGCACGACCAATGGCCTAGGTTGCCGATGGTAT-CGAGGCTCCCGCGTAACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
* * * * * *
86821038 GCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGGTGGTGCCC
66 ACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTGCCGATGGTGCCC
* * * *
86821102 GAGGCTCCCACACGACCAAGGGGCT-AGGTGCCGATGGTGCC
128 GAGGCTCTCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCC
* * * * * * *
86821143 CGAGGCTCCCGCACGACAAACGTCCTAGGTTGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
* *
86821208 AGCAATGTGCCGATG
66 ACCAAGGTGCCGATG
86821223 CTCCCGCACC
Statistics
Matches: 780, Mismatches: 130, Indels: 33
0.83 0.14 0.03
Matches are distributed among these distances:
168 25 0.03
169 460 0.59
170 292 0.37
171 3 0.00
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (169 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTGCCGATGGTGCCCGAG
GCTCTCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCC
Found at i:86821207 original size:127 final size:128
Alignment explanation
Indices: 86820127--86821222 Score: 1031
Period size: 127 Copynumber: 8.6 Consensus size: 128
86820117 CCCTGCTGCT
* * * * * * * *
86820127 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTACCAATAGTGTCCGAGGCTCCCGCACATCCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAG
* * * ** * * * *
86820191 CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
65 CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
86820254 CGATGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAA
** * * ** ** *
86820317 GGGCCGAGGTTACCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTG
64 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG
86820380 CC
127 CC
* ** * * * *
86820382 CGAGGTTCTTGCACGATCAA-GGCCTAGGTTGTCGATGGTGCCCGAGGTTCTCGCACGAT-CAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG-TCCAA-
* * * * *
86820445 GC-CTAAGTTACCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCCGATGGTGCC
64 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
86820509 CGAGGCTCCCGCAC-ATCCAAGGGCCTA-GATGCCGATGGTGGCCGAGGCTCCCGCACGACCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAG
** * * *
86820572 GGCCTAGGTGCCGATGGT-CCTGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
65 CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
86820635 CGAGGTTCCCGCATGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACATCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGC
* * *
86820700 ACCAAGGTGCCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATTGTGGC
66 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * ** * * * *
86820762 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCTCCTACACGACTAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGC
* * * ** *
86820827 GCCTAGGTGCCGATGGTGGCCGAGGCTCCTACACGACCAAGGGCCTAGGTTGCCGATGGTGGC
66 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * *
86820890 CGAGGCTCCCGCACGACCAGGGGCAGAGGTT-CCGATGGTGCCCGAGGCTCTCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGC
* * * * **
86820954 GCCTAGGTTG-CGATGGTGCCCGAGGCTCTCGCACGACCAATGGCCTAGGTTGCCGATGGT-AT
66 ACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*** * * *
86821016 CGAGGCTCCCGCGTAACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACATCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGC
* * *
86821081 ACCAAGGTGCCGGTGGTGCCCGAGGCTCCCACACGACCAAGGGGCTAGG-TGCCGATGGTGCC
66 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * * * *
86821143 CGAGGCTCCCGCACGACAAACGTCCTAGGTTGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGC
* *
86821208 AGCAATGTGCCGATG
66 ACCAAGGTGCCGATG
86821223 CTCCCGCACC
Statistics
Matches: 800, Mismatches: 149, Indels: 40
0.81 0.15 0.04
Matches are distributed among these distances:
126 141 0.18
127 515 0.64
128 143 0.18
129 1 0.00
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (128 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGC
ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:86821422 original size:24 final size:24
Alignment explanation
Indices: 86821395--86821470 Score: 89
Period size: 24 Copynumber: 3.2 Consensus size: 24
86821385 TTGATATTCT
* *
86821395 GGGATGGTTCGCCGGAGCACCGTC
1 GGGATGGATCGCCGGAGCACCGCC
* * *
86821419 GGGATGGCTCACCGGGGCACCGCC
1 GGGATGGATCGCCGGAGCACCGCC
* *
86821443 AGGATGGATCGCTGGAGCACCGCC
1 GGGATGGATCGCCGGAGCACCGCC
86821467 GGGA
1 GGGA
86821471 ACCTAACCGG
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.16, C:0.30, G:0.42, T:0.12
Consensus pattern (24 bp):
GGGATGGATCGCCGGAGCACCGCC
Found at i:86821934 original size:58 final size:58
Alignment explanation
Indices: 86821867--86821981 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 58
86821857 GGTGGGACAG
* *
86821867 GGACGATTCATTCATTATTGGGTACCGGACATGCAACGGTATCCGAA-TCTTACCTTTA
1 GGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATTC-TACCTTTA
*
86821925 GGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCAAATTCTACCTTT
1 GGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATTCTACCTTT
86821982 TGGGATTGGG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
58 51 0.96
59 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (58 bp):
GGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATTCTACCTTTA
Found at i:86822070 original size:24 final size:24
Alignment explanation
Indices: 86822020--86822073 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
86822010 TTTGTGTATC
* * **
86822020 CCGGGATGGCTCGCCGGATCATTG
1 CCGGGATGGATCGCCGGAGCACCG
*
86822044 CCGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
86822068 CCGGGA
1 CCGGGA
86822074 ACCTAACCGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.15, C:0.30, G:0.41, T:0.15
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:86830597 original size:24 final size:24
Alignment explanation
Indices: 86830565--86830618 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
86830555 TTTCAATATT
*
86830565 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
* *
86830589 CCGGGATGGATCGCTGGAGTACCG
1 CCGGGATGGATCGCCGGAGCACCG
86830613 CCGGGA
1 CCGGGA
86830619 ACCTAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.15, C:0.31, G:0.43, T:0.11
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:86833870 original size:27 final size:27
Alignment explanation
Indices: 86833839--86833989 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
86833829 TAAATTGTAC
86833839 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86833866 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86833892 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86833920 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86833948 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86833975 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86833990 GACTCAATAT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86833900 original size:54 final size:55
Alignment explanation
Indices: 86833839--86833989 Score: 180
Period size: 55 Copynumber: 2.8 Consensus size: 55
86833829 TAAATTGTAC
*
86833839 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
* * ** ** *
86833892 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
* * *
86833948 AGCACTAAGTGTGCGATTTGATTACGTAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCG
86833990 GACTCAATAT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 38 0.47
55 41 0.51
56 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
Found at i:86833980 original size:82 final size:81
Alignment explanation
Indices: 86833840--86833989 Score: 221
Period size: 82 Copynumber: 1.8 Consensus size: 81
86833830 AAATTGTACA
* *
86833840 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
86833905 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
86833921 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTGAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
86833985 GTGCG
64 GTGCG
86833990 GACTCAATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.26
82 45 0.74
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86841902 original size:27 final size:27
Alignment explanation
Indices: 86841871--86842048 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86841861 TAAATTGTAC
86841871 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86841898 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86841924 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86841952 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86841980 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86842007 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86842034 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86842049 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86841985 original size:82 final size:81
Alignment explanation
Indices: 86841872--86842027 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86841862 AAATTGTACA
* *
86841872 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86841936 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
86841953 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86842018 TGCGAGTTGA
65 TGCGAATTGA
86842028 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86842039 original size:82 final size:81
Alignment explanation
Indices: 86841868--86842048 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
86841858 GATTAAATTG
* *
86841868 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86841933 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86841949 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86842013 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86842031 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86842049 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86844163 original size:27 final size:27
Alignment explanation
Indices: 86844098--86844165 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
86844088 AAAAACCTAC
*
86844098 CAAGAGAAATAAAAAGTAAATTAATTAG
1 CAAGAAAAAT-AAAAGTAAATTAATTAG
* * * *
86844126 TAATAATAATAAAATTAAATTAAATT-G
1 CAAGAAAAATAAAAGTAAATT-AATTAG
86844153 CAAGAAAAATAAA
1 CAAGAAAAATAAA
86844166 TGGCTAAAGT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
27 21 0.68
28 10 0.32
ACGTcount: A:0.63, C:0.03, G:0.09, T:0.25
Consensus pattern (27 bp):
CAAGAAAAATAAAAGTAAATTAATTAG
Found at i:86848318 original size:23 final size:23
Alignment explanation
Indices: 86848270--86848341 Score: 76
Period size: 22 Copynumber: 3.2 Consensus size: 23
86848260 TTTTCACTAA
* *
86848270 TAATTATT-TAAAATATTTAAAAT
1 TAATTATTCTAAAATATTT-TATT
*
86848293 TAATTATTCAAAAATATTTTATT
1 TAATTATTCTAAAATATTTTATT
* *
86848316 TAATT-TTCTAGATTATTTTATT
1 TAATTATTCTAAAATATTTTATT
86848338 TAAT
1 TAAT
86848342 CGATTTTAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
22 18 0.43
23 15 0.36
24 9 0.21
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (23 bp):
TAATTATTCTAAAATATTTTATT
Found at i:86849785 original size:26 final size:26
Alignment explanation
Indices: 86849754--86849817 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
86849744 AACAAATTTT
86849754 ATCAAAATTTTATC-GAGGGTAAAATC
1 ATCAAAATTTTATCAG-GGGTAAAATC
*
86849780 GTCAAAATTTTATCAGGGGTAAAATC
1 ATCAAAATTTTATCAGGGGTAAAATC
86849806 ATCAAAATTTTA
1 ATCAAAATTTTA
86849818 CTAGAGTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 34 0.97
27 1 0.03
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (26 bp):
ATCAAAATTTTATCAGGGGTAAAATC
Found at i:86868239 original size:49 final size:49
Alignment explanation
Indices: 86868167--86868353 Score: 239
Period size: 49 Copynumber: 3.8 Consensus size: 49
86868157 TGAGGTCACG
*
86868167 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
* * ** * ** * * *
86868216 TGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-T-TGGTCGCA
86868267 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
* *
86868316 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
86868354 AGCTTCGGCT
Statistics
Matches: 113, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 73 0.65
50 2 0.02
51 38 0.34
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
Found at i:86868337 original size:100 final size:100
Alignment explanation
Indices: 86868162--86868349 Score: 349
Period size: 100 Copynumber: 1.9 Consensus size: 100
86868152 CATTGTGAGG
*
86868162 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
*
86868227 AAGTGTAGGCTACTATGCATACCCGAAAACTATGA
66 AAGTGCAGGCTACTATGCATACCCGAAAACTATGA
86868262 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
*
86868327 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCATACC
86868350 AGATAGCTTC
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCCGAAAACTATGA
Found at i:86870777 original size:251 final size:250
Alignment explanation
Indices: 86870301--86870806 Score: 940
Period size: 251 Copynumber: 2.0 Consensus size: 250
86870291 CAAGCTATCC
86870301 AGAAAACATAGGATGCATGCATAATTATACTTGACTAAATAAGATAACTGGAAAGTGGGCATTAA
1 AGAAAACATAGGATGCATGCATAATTATACTTGACTAAATAAGATAACTGGAAAGTGGGCATTAA
*
86870366 ACCAATATGAATGTTAGTTACTCGAAATGAATGACATGATTGAATATAATTGCTATGATGAAAAT
66 ACCAATATGAATGTTAGTTACTCGAAATGAATGACATGATTGAATATAATTGCTATGATGAAAAC
86870431 TGTGTTATATGTATATGTATATGAGAGTTGAGTTAGAGGCCCTACGACCCCTTCCCCCTTACCAA
131 TGTGTTATATGTATATGTATATGAGAGTTGAGTTAGAGGCCCTACGACCCCTTCCCCCTTACCAA
*
86870496 AGTGGTGTTTTATAATGGAATTTCATGAGATTTGTACTAAATAAGTTTCCGGTTG
196 AGTGGTGTTTTATAATGGAATTTCATGAGATTCGTACTAAATAAGTTTCCGGTTG
*
86870551 AGAAAACATAGGATGCATGCATAATTATACTTGACTAAATGAGATAACTGGAAAGTGGGCATTAA
1 AGAAAACATAGGATGCATGCATAATTATACTTGACTAAATAAGATAACTGGAAAGTGGGCATTAA
* *
86870616 ACCAATATGAATGTTAGTTACTCGAAATGAATGACATGATTGAGATATGATTGTTATGATGAAAA
66 ACCAATATGAATGTTAGTTACTCGAAATGAATGACATGATTGA-ATATAATTGCTATGATGAAAA
86870681 CTGTGTTATATGTATATGTATATGAGAGTTGAGTTAGAGGCCCTACGACCCCTTCCCCCTTACCA
130 CTGTGTTATATGTATATGTATATGAGAGTTGAGTTAGAGGCCCTACGACCCCTTCCCCCTTACCA
* *
86870746 AAGTGGTGTTTTATAATGGAATTTCATGAGATTCGTACTGAATAAGTTTTCGGTTG
195 AAGTGGTGTTTTATAATGGAATTTCATGAGATTCGTACTAAATAAGTTTCCGGTTG
86870802 AGAAA
1 AGAAA
86870807 CCAAAGAGTT
Statistics
Matches: 248, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
250 107 0.43
251 141 0.57
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (250 bp):
AGAAAACATAGGATGCATGCATAATTATACTTGACTAAATAAGATAACTGGAAAGTGGGCATTAA
ACCAATATGAATGTTAGTTACTCGAAATGAATGACATGATTGAATATAATTGCTATGATGAAAAC
TGTGTTATATGTATATGTATATGAGAGTTGAGTTAGAGGCCCTACGACCCCTTCCCCCTTACCAA
AGTGGTGTTTTATAATGGAATTTCATGAGATTCGTACTAAATAAGTTTCCGGTTG
Found at i:86871576 original size:15 final size:15
Alignment explanation
Indices: 86871556--86871607 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
86871546 CTTGGGTTTC
86871556 TTTATTCTGGATTTA
1 TTTATTCTGGATTTA
86871571 TTTATTCTAGG-TTT-
1 TTTATTCT-GGATTTA
86871585 TTCTA-TCTTGGATTTA
1 TT-TATTC-TGGATTTA
86871601 TTTATTC
1 TTTATTC
86871608 GGTTTTGTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
14 6 0.19
15 19 0.61
16 6 0.19
ACGTcount: A:0.17, C:0.10, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTATTCTGGATTTA
Found at i:86874256 original size:100 final size:100
Alignment explanation
Indices: 86874083--86874262 Score: 324
Period size: 100 Copynumber: 1.8 Consensus size: 100
86874073 TTGTGAGGTT
*
86874083 ACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATTATTGGCCGCATGTGTAGTACTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGCCGCATGTGTAGTACTAA
*
86874148 GTGTAGGCTACTATGTGCACCCGAAAACTGTGATC
66 GTGCAGGCTACTATGTGCACCCGAAAACTGTGATC
* *
86874183 ACGTGTGTAGTACTAAGTGCAGGCTACTGCGTGTACCAGATTATTGGTCGCATGTGTAGTACTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGCCGCATGTGTAGTACTAA
86874248 GTGCAGGCTACTATG
66 GTGCAGGCTACTATG
86874263 CATACCAGAT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 76 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (100 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGCCGCATGTGTAGTACTAA
GTGCAGGCTACTATGTGCACCCGAAAACTGTGATC
Found at i:86874272 original size:49 final size:49
Alignment explanation
Indices: 86874086--86874260 Score: 224
Period size: 49 Copynumber: 3.5 Consensus size: 49
86874076 TGAGGTTACG
* *
86874086 TGTGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATTATTGGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
* * * * ** * * *
86874135 TGTGTAGTACTAAGTGTAGGCTACTATGTGCACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-T-TGGTCGCA
*
86874186 TGTGTAGTACTAAGTGCAGGCTACTGCGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
86874235 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
86874261 TGCATACCAG
Statistics
Matches: 102, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 63 0.62
50 2 0.02
51 37 0.36
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
Found at i:86878184 original size:40 final size:40
Alignment explanation
Indices: 86878100--86878324 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
86878090 TTGAATGATG
* * * *
86878100 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
86878140 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86878180 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86878219 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
86878259 TCCGTGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
86878300 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86878325 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86878342 original size:80 final size:79
Alignment explanation
Indices: 86878107--86878357 Score: 226
Period size: 79 Copynumber: 3.2 Consensus size: 79
86878097 ATGTCCGGGC
* * * * * * **
86878107 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATTTGAACG
* *
86878170 AGAT-ACTAATTCCGGGC
64 AG-TGACTAAATCC-GGT
* **
86878187 TAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
*
86878251 TTACTAAATCCGTGT
66 TGACTAAATCCG-GT
* *
86878266 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA
*
86878330 G-GAGCTATATCCGGT
65 GTGA-CTAAATCCGGT
* *
86878345 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
86878358 TACGTGATTT
Statistics
Matches: 146, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.02
79 71 0.49
80 70 0.48
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
TGACTAAATCCGGT
Found at i:86884100 original size:16 final size:17
Alignment explanation
Indices: 86884068--86884101 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
86884058 CCTAATTTTC
*
86884068 CCTTTTCTTCTTTCTTT
1 CCTTTTCTTCCTTCTTT
86884085 CCTTTT-TTCCTTCTTT
1 CCTTTTCTTCCTTCTTT
86884101 C
1 C
86884102 TTTCCCTGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (17 bp):
CCTTTTCTTCCTTCTTT
Found at i:86884130 original size:4 final size:4
Alignment explanation
Indices: 86884121--86884159 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
86884111 TAATCGTGCC
* *
86884121 TTCT TTCT TTCT TTCT TTCT TTTT TTAT TTCAT TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC-T TTCT TT
86884160 ATTCTTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
4 27 0.87
5 4 0.13
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (4 bp):
TTCT
Found at i:86884151 original size:12 final size:12
Alignment explanation
Indices: 86884124--86884166 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
86884114 TCGTGCCTTC
*
86884124 TTTCTTTCTTTC
1 TTTCTTTCTTTA
*
86884136 TTTCTTTTTTTA
1 TTTCTTTCTTTA
86884148 TTTCATTTCTTTA
1 TTTC-TTTCTTTA
86884161 -TTCTTT
1 TTTCTTT
86884167 TATTATATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 3 0.11
12 17 0.63
13 7 0.26
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTCTTTCTTTA
Found at i:86884156 original size:21 final size:20
Alignment explanation
Indices: 86884128--86884170 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
86884118 GCCTTCTTTC
* *
86884128 TTTCTTTCTTTCTTTTTTTA
1 TTTCTTTCTTTATTCTTTTA
86884148 TTTCATTTCTTTATTCTTTTA
1 TTTC-TTTCTTTATTCTTTTA
86884169 TT
1 TT
86884171 ATATTATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTCTTTCTTTATTCTTTTA
Found at i:86885992 original size:22 final size:22
Alignment explanation
Indices: 86885967--86886012 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
86885957 ATCGCATTAT
86885967 CAGAACTTGGGTATCACAATAC
1 CAGAACTTGGGTATCACAATAC
* * *
86885989 CAGAGCTTGGGTATCGCTATAC
1 CAGAACTTGGGTATCACAATAC
86886011 CA
1 CA
86886013 CTATTGAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (22 bp):
CAGAACTTGGGTATCACAATAC
Found at i:86889799 original size:37 final size:39
Alignment explanation
Indices: 86889758--86889839 Score: 123
Period size: 39 Copynumber: 2.2 Consensus size: 39
86889748 TGATAAATCA
* *
86889758 TTTCATA-A-GAAATTATATACTTTAATTTATATCACCT
1 TTTCATATATGAAATTATATACTTTAATTTATACCACCG
*
86889795 TTTCATATATGAAATTATATATTTTAATTTATACCACCG
1 TTTCATATATGAAATTATATACTTTAATTTATACCACCG
86889834 TTTCAT
1 TTTCAT
86889840 GTACATAAGC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 7 0.17
38 1 0.03
39 32 0.80
ACGTcount: A:0.35, C:0.13, G:0.04, T:0.48
Consensus pattern (39 bp):
TTTCATATATGAAATTATATACTTTAATTTATACCACCG
Found at i:86894289 original size:19 final size:19
Alignment explanation
Indices: 86894265--86894304 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
86894255 AAAATCTTTC
86894265 ATTTTTAAACATTTCATAA
1 ATTTTTAAACATTTCATAA
86894284 ATTTTTAAACATTTCATAA
1 ATTTTTAAACATTTCATAA
86894303 AT
1 AT
86894305 CATATCATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTTTAAACATTTCATAA
Found at i:86905922 original size:27 final size:26
Alignment explanation
Indices: 86905882--86905992 Score: 159
Period size: 27 Copynumber: 4.2 Consensus size: 26
86905872 AGGAAGCGTC
* *
86905882 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
86905909 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
86905936 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
86905963 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
86905989 CTGG
1 CTGG
86905993 CAACCATGCT
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
26 16 0.21
27 60 0.77
28 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:86905966 original size:54 final size:53
Alignment explanation
Indices: 86905882--86905992 Score: 177
Period size: 54 Copynumber: 2.1 Consensus size: 53
86905872 AGGAAGCGTC
*
86905882 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
86905936 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
86905989 CTGG
1 CTGG
86905993 CAACCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 12 0.23
54 41 0.77
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:86913775 original size:27 final size:26
Alignment explanation
Indices: 86913735--86913846 Score: 152
Period size: 27 Copynumber: 4.2 Consensus size: 26
86913725 AGGAAGCGTC
* *
86913735 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
86913762 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
86913789 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
86913816 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
*
86913842 TTGGT
1 CTGGT
86913847 AGTCATGCTG
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 16 0.21
27 60 0.77
28 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:86913819 original size:54 final size:53
Alignment explanation
Indices: 86913735--86913846 Score: 170
Period size: 54 Copynumber: 2.1 Consensus size: 53
86913725 AGGAAGCGTC
*
86913735 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
86913789 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
*
86913842 TTGGT
1 CTGGT
86913847 AGTCATGCTG
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 12 0.23
54 41 0.77
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:86915131 original size:26 final size:27
Alignment explanation
Indices: 86915096--86915147 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
86915086 TCGCAGTGAA
*
86915096 GCTACTAACAGT-AACGTAGCAAAGCT
1 GCTAATAACAGTAAACGTAGCAAAGCT
*
86915122 GCTAATAACAGTAAACGTGGCAAAGC
1 GCTAATAACAGTAAACGTAGCAAAGC
86915148 CACCAGAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.17
Consensus pattern (27 bp):
GCTAATAACAGTAAACGTAGCAAAGCT
Found at i:86919459 original size:19 final size:18
Alignment explanation
Indices: 86919415--86919461 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
86919405 TGCAATCTAA
*
86919415 TTTTATTTTTAATTTTAT
1 TTTTATTTCTAATTTTAT
* *
86919433 TCTAATTTACTAATTTTAT
1 TTTTATTT-CTAATTTTAT
86919452 TTTTATTTCT
1 TTTTATTTCT
86919462 TCTGACAGGT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTATTTCTAATTTTAT
Found at i:86927195 original size:18 final size:18
Alignment explanation
Indices: 86927172--86927207 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
86927162 ATGAATTTTT
86927172 AGTTTAGATAATTAGTTA
1 AGTTTAGATAATTAGTTA
86927190 AGTTTAGATAATTAGTTA
1 AGTTTAGATAATTAGTTA
86927208 GTTAAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (18 bp):
AGTTTAGATAATTAGTTA
Found at i:86937207 original size:8 final size:7
Alignment explanation
Indices: 86937172--86937211 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
86937162 AATAAATTCA
*
86937172 TAAATTA
1 TAAATTT
86937179 TAAATTT
1 TAAATTT
*
86937186 CAAATTT
1 TAAATTT
86937193 TAAATTT
1 TAAATTT
*
86937200 TAAAATT
1 TAAATTT
86937207 TAAAT
1 TAAAT
86937212 CTAAATCCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (7 bp):
TAAATTT
Found at i:86941887 original size:25 final size:23
Alignment explanation
Indices: 86941859--86941904 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
86941849 AGAAAATTCA
86941859 AAATTTTAAAAATAAAAATAATTAC
1 AAATTTT-AAAA-AAAAATAATTAC
*
86941884 AAATTTTGAAAAAAAATAATT
1 AAATTTTAAAAAAAAATAATT
86941905 TTTATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 3 0.15
25 7 0.35
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
AAATTTTAAAAAAAAATAATTAC
Found at i:86942244 original size:3 final size:3
Alignment explanation
Indices: 86942236--86942270 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
86942226 TGAATAAATC
86942236 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
86942271 GCCAAAGCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:86943555 original size:17 final size:17
Alignment explanation
Indices: 86943504--86943555 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
86943494 ATAATATATA
* *
86943504 TTATA-ATTTAATAATA
1 TTATATATTTTATAATT
* * *
86943520 TTATATTTTTTGTACTT
1 TTATATATTTTATAATT
86943537 TTATATATTTTATAATT
1 TTATATATTTTATAATT
86943554 TT
1 TT
86943556 TTTATAATTT
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
16 5 0.19
17 22 0.81
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (17 bp):
TTATATATTTTATAATT
Found at i:86943557 original size:19 final size:20
Alignment explanation
Indices: 86943535--86943586 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
86943525 TTTTTTGTAC
86943535 TTTTATAT-ATTTTATAATT
1 TTTTATATAATTTTATAATT
**
86943554 TTTT-TATAATTTTATGTTT
1 TTTTATATAATTTTATAATT
86943573 TTTTA-ATAATTTTA
1 TTTTATATAATTTTA
86943587 ATTATAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 3 0.10
19 26 0.90
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTATATAATTTTATAATT
Found at i:86943575 original size:28 final size:30
Alignment explanation
Indices: 86943525--86943585 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 30
86943515 TAATATTATA
* *
86943525 TTTTTTGTACTTTTATA-TATTTT-ATAAT
1 TTTTTTATAATTTTATATTATTTTAATAAT
* *
86943553 TTTTTTATAATTTTATGTTTTTTTAATAAT
1 TTTTTTATAATTTTATATTATTTTAATAAT
86943583 TTT
1 TTT
86943586 AATTATAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 14 0.52
29 5 0.19
30 8 0.30
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (30 bp):
TTTTTTATAATTTTATATTATTTTAATAAT
Found at i:86943753 original size:31 final size:32
Alignment explanation
Indices: 86943689--86943753 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 32
86943679 ATTGACTATT
* *
86943689 AATTTTAACAATTAAAAGATTTAATTAATTAA
1 AATTTTAACAATTAAAAGATTAAATTAAGTAA
*
86943721 AATTTTAA-AGTTCAAAA-ATTAAATTAAGTAA
1 AATTTTAACAATT-AAAAGATTAAATTAAGTAA
86943752 AA
1 AA
86943754 AAAATAGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 17 0.59
32 12 0.41
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (32 bp):
AATTTTAACAATTAAAAGATTAAATTAAGTAA
Found at i:86944811 original size:21 final size:22
Alignment explanation
Indices: 86944787--86944839 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
86944777 AAAGGTTTTC
* *
86944787 TTTTTATTTTTTCAAAAT-ATA
1 TTTTTATTTTTTAAAAATGAGA
*
86944808 TTTTT-TTTTGTAAAAATGAGA
1 TTTTTATTTTTTAAAAATGAGA
*
86944829 TTTTGATTTTT
1 TTTTTATTTTT
86944840 AGTTCTATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 10 0.40
21 11 0.44
22 4 0.16
ACGTcount: A:0.28, C:0.02, G:0.08, T:0.62
Consensus pattern (22 bp):
TTTTTATTTTTTAAAAATGAGA
Found at i:86945016 original size:33 final size:33
Alignment explanation
Indices: 86944974--86945040 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
86944964 TAAGGACATA
*
86944974 GTTTTTCAACCTACCTTTGTTGTCTTTAACGGT
1 GTTTTTCAACCTACCGTTGTTGTCTTTAACGGT
86945007 GTTTTTCAACCTACCGTTGTTGTCTTTAACGGT
1 GTTTTTCAACCTACCGTTGTTGTCTTTAACGGT
86945040 G
1 G
86945041 AAATTTTGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (33 bp):
GTTTTTCAACCTACCGTTGTTGTCTTTAACGGT
Found at i:86945122 original size:21 final size:21
Alignment explanation
Indices: 86945097--86945138 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
86945087 AGAATATCAT
86945097 AAGAATTTGACATTTTCTATA
1 AAGAATTTGACATTTTCTATA
86945118 AAGAATTTGACATTTTCTATA
1 AAGAATTTGACATTTTCTATA
86945139 TTTGGAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (21 bp):
AAGAATTTGACATTTTCTATA
Found at i:86947025 original size:5 final size:5
Alignment explanation
Indices: 86947015--86947041 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
86947005 AAGATATGAT
86947015 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
86947042 ATTAAATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:86947148 original size:27 final size:27
Alignment explanation
Indices: 86947117--86947180 Score: 128
Period size: 27 Copynumber: 2.4 Consensus size: 27
86947107 AAGGGAATCG
86947117 ATTACTTTTGGGAGGAGACTTAGATGA
1 ATTACTTTTGGGAGGAGACTTAGATGA
86947144 ATTACTTTTGGGAGGAGACTTAGATGA
1 ATTACTTTTGGGAGGAGACTTAGATGA
86947171 ATTACTTTTG
1 ATTACTTTTG
86947181 TATTCCTACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.28, C:0.08, G:0.27, T:0.38
Consensus pattern (27 bp):
ATTACTTTTGGGAGGAGACTTAGATGA
Found at i:86949005 original size:15 final size:15
Alignment explanation
Indices: 86948973--86949018 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
86948963 ATTTATCTAT
86948973 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
86948990 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
86949005 TTATATTTTTATTT
1 TTATATTTCTATTT
86949019 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:86949011 original size:23 final size:23
Alignment explanation
Indices: 86948985--86949051 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
86948975 ATATTTCTAC
86948985 TATTATTATATTTCTATTTATTA
1 TATTATTATATTTCTATTTATTA
86949008 TATT-TT-TATTTCTATTTATATA
1 TATTATTATATTTCTATTTAT-TA
*
86949030 CTAATATTAT-TTTC-A-TTATTA
1 -TATTATTATATTTCTATTTATTA
86949051 T
1 T
86949052 TTTTCTTATA
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 8 0.21
23 8 0.21
24 6 0.15
25 1 0.03
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (23 bp):
TATTATTATATTTCTATTTATTA
Found at i:86949217 original size:25 final size:24
Alignment explanation
Indices: 86949156--86949217 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
86949146 TATAACGCTC
* *
86949156 ATTTCAAATTTTTATACATTATTT
1 ATTTCAAATTTTCATACATTATGT
*
86949180 ACTTT-AATATTTTCATATATTATGT
1 A-TTTCAA-ATTTTCATACATTATGT
86949205 ATTTCAAACTTTT
1 ATTTCAAA-TTTT
86949218 TTTTACACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
24 7 0.23
25 24 0.77
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (24 bp):
ATTTCAAATTTTCATACATTATGT
Found at i:86963786 original size:46 final size:44
Alignment explanation
Indices: 86963719--86963893 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 44
86963709 TGTAACCCGC
86963719 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCGTTC-CAT
* * *
86963765 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCC-A--T
* *** * * *
86963811 ACATCTCTCGAACTCGGACTAAACTCAACGAGTTCGGACGCTCTCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CGTTC-CAT
*
86963858 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
86963894 GTGCCCAAAT
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 65 0.62
47 30 0.29
49 2 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCCAT
Done.