Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 257 of 362
Found at i:86966324 original size:30 final size:30
Alignment explanation
Indices: 86966280--86966368 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
86966270 CAAAGATAAC
*
86966280 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
86966309 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
86966339 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
86966369 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:86966328 original size:15 final size:14
Alignment explanation
Indices: 86966280--86966362 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
86966270 CAAAGATAAC
*
86966280 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
86966294 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
86966309 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
86966324 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
86966339 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
86966354 AAGAAACCC
1 AAGAAACCC
86966363 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:86966368 original size:15 final size:15
Alignment explanation
Indices: 86966291--86966368 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
86966281 AGAAAACCGA
86966291 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
86966306 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
86966320 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
86966335 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
86966351 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
86966366 ATA
1 ATA
86966369 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86970201 original size:46 final size:45
Alignment explanation
Indices: 86970134--86970308 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
86970124 TGTAACCCGC
86970134 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCGTTCGCAT
* * *
86970180 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGC-A--T
* *** * * *
86970226 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
*
86970273 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
86970309 GTGCCCAAAT
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 65 0.62
47 30 0.29
49 2 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
Found at i:86970250 original size:93 final size:93
Alignment explanation
Indices: 86970142--86970313 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
86970132 GCCCATAAGT
* *
86970142 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
86970206 ATGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
86970235 GAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
86970300 CGAGTTCGGGTGCC
66 CGAGCTCGGATGCC
86970314 CAAATATCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:86981801 original size:12 final size:11
Alignment explanation
Indices: 86981783--86981807 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86981773 ACACCATAGT
86981783 TAAAAAAAAAC
1 TAAAAAAAAAC
86981794 TAAAAAAAAAC
1 TAAAAAAAAAC
86981805 TAA
1 TAA
86981808 CTTAGTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.80, C:0.08, G:0.00, T:0.12
Consensus pattern (11 bp):
TAAAAAAAAAC
Found at i:86983455 original size:28 final size:29
Alignment explanation
Indices: 86983422--86983522 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
86983412 TATAGTAAGT
* * *
86983422 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
86983450 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
86983479 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
86983508 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
86983523 CAATTTCATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:86985298 original size:5 final size:5
Alignment explanation
Indices: 86985288--86985312 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
86985278 CTTGAACAAA
86985288 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
86985313 CACATAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:86995105 original size:40 final size:40
Alignment explanation
Indices: 86995014--86995107 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
86995004 CCAACTCCGT
* * *
86995014 CCAACCCAACACACC--ATGTGGGGATAAAATCGACCCAC
1 CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
* * * *
86995052 CCATCCCTGCACACCAAATATGGGGATAGAATCAACCCAT
1 CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
*
86995092 CCAACCTTACACACCA
1 CCAACCCTACACACCA
86995108 TAGAGTACCG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
38 12 0.27
40 32 0.73
ACGTcount: A:0.36, C:0.37, G:0.13, T:0.14
Consensus pattern (40 bp):
CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
Found at i:86995495 original size:18 final size:18
Alignment explanation
Indices: 86995456--86995491 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
86995446 CATATGGCCT
*
86995456 GCCCGTGTGGACCTACAC
1 GCCCGTGTGGACCCACAC
86995474 GCCCGTGTGG-CCCACAC
1 GCCCGTGTGGACCCACAC
86995491 G
1 G
86995492 GCCCAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.14, C:0.42, G:0.31, T:0.14
Consensus pattern (18 bp):
GCCCGTGTGGACCCACAC
Found at i:87005118 original size:27 final size:27
Alignment explanation
Indices: 87005078--87005144 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
87005068 TGCTGTAGCG
* *
87005078 AACTCTGAAAGAATGGTACT-CATGGCA
1 AACTATGAAGGAATGGTA-TGCATGGCA
*
87005105 AACTATGAAGGAATGGTATGCATGGCG
1 AACTATGAAGGAATGGTATGCATGGCA
87005132 AACTATGAAGGAA
1 AACTATGAAGGAA
87005145 ATGCCCTTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (27 bp):
AACTATGAAGGAATGGTATGCATGGCA
Found at i:87009663 original size:150 final size:151
Alignment explanation
Indices: 87009433--87009816 Score: 507
Period size: 149 Copynumber: 2.6 Consensus size: 151
87009423 TTAATTTTTT
* * *
87009433 AAAAAAAGAGAAAGTTTAGATTTT-AATAGAT--AAAT-GTTTTTTTT-AGTTATTTTAAAGGAA
1 AAAAAAAGAGAAAGTTTAGATTTTGAA-AAATAAAAATATTTTTTTTTAAGTCATTTTAAAGGAA
* * * *
87009493 AGTTTAAATTTTTAATACAAAGTTTTGA-TTTTTTTCAACTATTTCAAAATAAAAGGTTTAATCT
65 AGTTTAAAATTTTAAAACAAAGTTTTAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCT
87009557 TTAAGAAAAATAG-TGTTTTAA
130 TTAAGAAAAATAGTTGTTTTAA
*
87009578 AAAAAAATAGAAAGTTTAGATTTTGAAAAATAAAAATATCTTTTTTTTAAGTCATTTTAAAGGAA
1 AAAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATAT-TTTTTTTTAAGTCATTTTAAAGGAA
* * *
87009643 AATTTAAAATTTTAAGACAAAGTTTTAATTTTTTTTCAATTATTTCAAAATAAAAGCTTTAATCT
65 AGTTTAAAATTTTAAAACAAAGTTTTAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCT
* *
87009708 TTAAGAAAAATAGTTTTTTTTA
130 TTAAGAAAAATAGTTGTTTTAA
** * * *
87009730 AAAAAGGGAGAAAGTTTAGATTTTGAAAAATAAAAATA--TATTTTTAAGTCATTTGAAAAGAAA
1 AAAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATTTTTTTTTAAGTCATTTTAAAGGAAA
* *
87009793 GTCTGAAATTTTAAAACAAAGTTT
66 GTTTAAAATTTTAAAACAAAGTTT
87009817 AGTCTGAAAT
Statistics
Matches: 209, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
145 26 0.12
146 2 0.01
147 4 0.02
149 50 0.24
150 39 0.19
151 47 0.22
152 41 0.20
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (151 bp):
AAAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATTTTTTTTTAAGTCATTTTAAAGGAAA
GTTTAAAATTTTAAAACAAAGTTTTAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTT
TAAGAAAAATAGTTGTTTTAA
Found at i:87009820 original size:25 final size:25
Alignment explanation
Indices: 87009792--87009841 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
87009782 TTGAAAAGAA
87009792 AGTCTGAAATTTTAAAACAAAGTTT
1 AGTCTGAAATTTTAAAACAAAGTTT
87009817 AGTCTGAAATTTTAAAACAAAGTTT
1 AGTCTGAAATTTTAAAACAAAGTTT
87009842 TAATTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (25 bp):
AGTCTGAAATTTTAAAACAAAGTTT
Found at i:87010425 original size:25 final size:24
Alignment explanation
Indices: 87010397--87010443 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
87010387 TCACTTGCAT
87010397 TTATACA-TTATATATTTAATGTTAA
1 TTATACACTT-TAT-TTTAATGTTAA
*
87010422 TTATGCACTTTATTTTAATGTT
1 TTATACACTTTATTTTAATGTT
87010444 TTATATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATACACTTTATTTTAATGTTAA
Found at i:87010491 original size:21 final size:22
Alignment explanation
Indices: 87010467--87010525 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
87010457 CACTTGTATA
*
87010467 ATTTTTATTTATTCTT-ATTTC-
1 ATTTTTATTTATT-TTAATGTCT
87010488 ATTTTTATTTTATTTTAATGTCT
1 ATTTTTA-TTTATTTTAATGTCT
*
87010511 ATTTATATTTATTTT
1 ATTTTTATTTATTTT
87010526 TTTTACACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
21 9 0.27
22 18 0.55
23 6 0.18
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (22 bp):
ATTTTTATTTATTTTAATGTCT
Found at i:87010504 original size:27 final size:26
Alignment explanation
Indices: 87010469--87010530 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
87010459 CTTGTATAAT
*
87010469 TTTTA-TTTAT-TCTTATTTCATTTTTA
1 TTTTATTTTATGTC-TATTT-ATATTTA
87010495 TTTTATTTTAATGTCTATTTATATTTA
1 TTTTATTTT-ATGTCTATTTATATTTA
87010522 TTTT-TTTTA
1 TTTTATTTTA
87010531 CACATTCCCC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
25 1 0.03
26 9 0.28
27 13 0.41
28 7 0.22
29 2 0.06
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.73
Consensus pattern (26 bp):
TTTTATTTTATGTCTATTTATATTTA
Found at i:87013281 original size:41 final size:41
Alignment explanation
Indices: 87013202--87013281 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 41
87013192 GAGAGGTCAA
* * **
87013202 ATGCCCGTGTAAAGATAGGCACACGGTCGTGTGGCTAAGAC
1 ATGCCCGTGTAAAGAGAAGCACACGGTCGTGTAACTAAGAC
*
87013243 ATGCCCGTGTGAAGAGAAGCACACGG-CTGTGTAACTAAG
1 ATGCCCGTGTAAAGAGAAGCACACGGTC-GTGTAACTAAG
87013282 GCACACACCC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 1 0.03
41 32 0.97
ACGTcount: A:0.29, C:0.21, G:0.31, T:0.19
Consensus pattern (41 bp):
ATGCCCGTGTAAAGAGAAGCACACGGTCGTGTAACTAAGAC
Found at i:87015588 original size:13 final size:13
Alignment explanation
Indices: 87015572--87015602 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
87015562 ACCGAATAAC
*
87015572 AAAATAGAAACTA
1 AAAATAAAAACTA
87015585 AAAATAAAAACTA
1 AAAATAAAAACTA
87015598 AAAAT
1 AAAAT
87015603 TTATTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.16
Consensus pattern (13 bp):
AAAATAAAAACTA
Found at i:87022905 original size:22 final size:22
Alignment explanation
Indices: 87022877--87022920 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
87022867 TCTAGATGTA
87022877 GCTAAATACTCAGAGTGGGTGG
1 GCTAAATACTCAGAGTGGGTGG
87022899 GCTAAATACTCAGAGTGGGTGG
1 GCTAAATACTCAGAGTGGGTGG
87022921 CAAATATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.36, T:0.23
Consensus pattern (22 bp):
GCTAAATACTCAGAGTGGGTGG
Found at i:87027353 original size:79 final size:81
Alignment explanation
Indices: 87027217--87027401 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
87027207 TTGAATGATG
* *
87027217 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
87027281 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
87027296 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
87027358 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
87027376 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87027402 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:87027415 original size:40 final size:40
Alignment explanation
Indices: 87027218--87027401 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
87027208 TGAATGATGT
* * * *
87027218 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
87027258 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
87027298 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
87027336 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
87027377 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
87027402 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:87027423 original size:79 final size:79
Alignment explanation
Indices: 87027270--87027424 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
87027260 GGACTAAGAT
* * **
87027270 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
87027335 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
87027349 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
87027412 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
87027425 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:87029462 original size:13 final size:13
Alignment explanation
Indices: 87029444--87029468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87029434 AATCACAAAT
87029444 AAATACACATATC
1 AAATACACATATC
87029457 AAATACACATAT
1 AAATACACATAT
87029469 TTTTTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATACACATATC
Found at i:87038321 original size:24 final size:24
Alignment explanation
Indices: 87038289--87038345 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
87038279 AAGAGCTGTA
* *
87038289 ATCGGGAAGTTCACAAAGGACCAT
1 ATCGAGAAGTTCACAAAGAACCAT
87038313 ATCGAGAAGTTCACAAAGAACCAT
1 ATCGAGAAGTTCACAAAGAACCAT
*
87038337 ATTGAGAAG
1 ATCGAGAAG
87038346 CACAGAATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.42, C:0.18, G:0.23, T:0.18
Consensus pattern (24 bp):
ATCGAGAAGTTCACAAAGAACCAT
Found at i:87041722 original size:21 final size:20
Alignment explanation
Indices: 87041690--87041729 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
87041680 CATGTATTTT
87041690 AATGATTTATGATAGATTATG
1 AATGATTTATGATAG-TTATG
87041711 AATG-TTTGATGATAGTTAT
1 AATGATTT-ATGATAGTTAT
87041730 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
AATGATTTATGATAGTTATG
Found at i:87046656 original size:42 final size:42
Alignment explanation
Indices: 87046543--87046702 Score: 194
Period size: 42 Copynumber: 3.8 Consensus size: 42
87046533 GTACTAATGT
* * * *
87046543 CATATCCCAGATATGGTCCTACATGTAATCTCGTATCGATTC
1 CATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
* * *
87046585 CAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
* ** *
87046628 CATATCCTAGATATGGTCTTACATGAAATCTCATATAAATGT
1 CATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
* *
87046670 CATATCCCAGATATGGTCTTACGTGTAATCTCA
1 CATATCCCAGATATGGTCTTACATGAAATCTCA
87046703 GTAACCCTAA
Statistics
Matches: 100, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 65 0.65
43 35 0.35
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
Found at i:87052728 original size:21 final size:20
Alignment explanation
Indices: 87052704--87052743 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
87052694 CACGTATTTT
87052704 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
87052725 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
87052744 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:87052751 original size:20 final size:21
Alignment explanation
Indices: 87052709--87052751 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
87052699 ATTTTAATGA
*
87052709 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
87052730 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
87052750 TT
1 TT
87052752 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:87056005 original size:39 final size:40
Alignment explanation
Indices: 87055901--87056085 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
87055891 TTGAATGATG
* * *
87055901 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
87055940 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
87055981 TCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
87056020 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
87056059 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
87056086 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:87056039 original size:79 final size:81
Alignment explanation
Indices: 87055901--87056085 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
87055891 TTGAATGATG
* *
87055901 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
87055965 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
87055980 TTCCGGGCTAAG-CCCAAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
87056042 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
87056060 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87056086 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:87056107 original size:79 final size:79
Alignment explanation
Indices: 87055954--87056118 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
87055944 GGACTAAGAT
* * **
87055954 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
*
87056019 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
87056033 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACGAGTTA-C
* *
87056096 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
87056112 CCGAAGG
1 CCGAAGG
87056119 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:87059664 original size:17 final size:17
Alignment explanation
Indices: 87059606--87059664 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
87059596 TCTTATATCG
*
87059606 AGAAAAAAAGA-AAAAAA
1 AGAAAAAAA-ACAATAAA
*
87059623 AG-ACAAAAACAATAAA
1 AGAAAAAAAACAATAAA
* *
87059639 ACAATAAAAACAATAAA
1 AGAAAAAAAACAATAAA
87059656 AGAAAAAAA
1 AGAAAAAAA
87059665 TAAAGAGAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 1 0.03
16 11 0.32
17 22 0.65
ACGTcount: A:0.81, C:0.07, G:0.07, T:0.05
Consensus pattern (17 bp):
AGAAAAAAAACAATAAA
Found at i:87060131 original size:42 final size:42
Alignment explanation
Indices: 87060068--87060444 Score: 447
Period size: 42 Copynumber: 9.0 Consensus size: 42
87060058 AAGGAAAACA
* * *
87060068 TTCATTTCATTTAGA-AGCCCAAGTGTGGAGGTCCATCTACTT
1 TTCATTGCATTTAGAGA-CCCAGGTGTGGAGGTCCATTTACTT
* * *
87060110 TTCATTGCATTTAGACACCCAAGTGTGGAGG-CTCGTTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTC-CATTTACTT
* *
87060152 TTCATTGCATTTAGAGACCTAGGTGTGGAGGTCCATTTAATT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * *
87060194 TTCATTGCATTCAGAGGCCCAGGTATGGAGGTCCATTTGCTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* *
87060236 TTCATTGCATTT--AGACTCAGGTGTGGAGGTCCATTTACAT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* *
87060276 TTCATTGCATTTAAAGACCCAAGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * * *
87060318 TTCATTACATTTAGAGGCCCAGGTATGGAGGTCAATTCACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * *
87060360 TTCATTGCATTTAAAGACCTAGGTGTGGAGGTCCATTAACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * * *
87060402 TTCATTTCATTTAGTGACCCAAGTATGGAGGTCCGTTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
87060444 T
1 T
87060445 ACTAGTTTAC
Statistics
Matches: 285, Mismatches: 45, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
40 35 0.12
41 1 0.00
42 247 0.87
43 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.36
Consensus pattern (42 bp):
TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
Found at i:87060283 original size:166 final size:166
Alignment explanation
Indices: 87060090--87060415 Score: 456
Period size: 166 Copynumber: 2.0 Consensus size: 166
87060080 AGAAGCCCAA
* * *
87060090 GTGTGGAGGTCCATCTACTTTTCATTGCATTTAGACACCCAAGTGTGGAGG-CTCGTTTACTTTT
1 GTGTGGAGGTCCATCTACATTTCATTGCATTTAAACACCCAAGTGTGGAGGTC-CATTTACTTTT
* * * * * * *
87060154 CATTGCATTTAGAGACCTAGGTGTGGAGGTCCATTTAATTTTCATTGCATTCAGAGGCCCAGGTA
65 CATTACATTTAGAGACCCAGGTATGGAGGTCAATTCAATTTTCATTGCATTCAAAGACCCAGGTA
**
87060219 TGGAGGTCCATTTGCTTTTCATTGCATTTAGACTCAG
130 TGGAGGTCCATTAACTTTTCATTGCATTTAGACTCAG
* *
87060256 GTGTGGAGGTCCATTTACATTTCATTGCATTTAAAGACCCAAGTGTGGAGGTCCATTTACTTTTC
1 GTGTGGAGGTCCATCTACATTTCATTGCATTTAAACACCCAAGTGTGGAGGTCCATTTACTTTTC
* * * * *
87060321 ATTACATTTAGAGGCCCAGGTATGGAGGTCAATTCACTTTTCATTGCATTTAAAGACCTAGGTGT
66 ATTACATTTAGAGACCCAGGTATGGAGGTCAATTCAATTTTCATTGCATTCAAAGACCCAGGTAT
*
87060386 GGAGGTCCATTAACTTTTCATTTCATTTAG
131 GGAGGTCCATTAACTTTTCATTGCATTTAG
87060416 TGACCCAAGT
Statistics
Matches: 139, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
166 138 0.99
167 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (166 bp):
GTGTGGAGGTCCATCTACATTTCATTGCATTTAAACACCCAAGTGTGGAGGTCCATTTACTTTTC
ATTACATTTAGAGACCCAGGTATGGAGGTCAATTCAATTTTCATTGCATTCAAAGACCCAGGTAT
GGAGGTCCATTAACTTTTCATTGCATTTAGACTCAG
Found at i:87061587 original size:155 final size:154
Alignment explanation
Indices: 87061186--87061950 Score: 956
Period size: 155 Copynumber: 5.0 Consensus size: 154
87061176 AAAGTTTTTA
* * *
87061186 TTTTTTT-AAAAAA-GAGAAAGTTTAGATTTT-AACAAATAAGAAT-T-TTTTTTTAGTTATTTT
1 TTTTTTTAAAAAAAGGAGAAAGTTTAGATTTTGAA-AAATAAAAATCTGTTTTTTAAGTCATTTT
* *
87061246 AAAAGAAAGTTTAAATTTTTAAAACAAAGTTTTGATTATTTTTTCAACTATTTCAAAGA-AAAAG
65 AAAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAA-ATAAAAG
*
87061310 TTTTAATCTTTAAGAAAAATGA--TT
129 TTTTAATCTTTAAGAAAAATAATGTT
* * * * *
87061334 TTTTTTTAAAAAAAAGAAAAAGTTTAGATTTTGAAAAATTAAAATCCGTTTTTTTTAGTCATTTT
1 TTTTTTTAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTG-TTTTTTAAGTCATTTT
* * *
87061399 AAAGGAAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAGC
65 AAAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAGT
87061464 TTTAATCTTTAAGAAAAATAATGTT
130 TTTAATCTTTAAGAAAAATAATGTT
*
87061489 TTTTTTTAAAAAAAGGGAGAAAG-TTAGATTTTAAAAAATAAAAAATCTGTTTTTTAAGTCATTT
1 TTTTTTTAAAAAAA-GGAGAAAGTTTAGATTTTGAAAAAT-AAAAATCTGTTTTTTAAGTCATTT
* * *
87061553 TAAATGAAAGTTTAAATTTTTAAAATAAAATTTTGA-TTTTTTTTCAACTATTTCAAAGTAAAAA
64 TAAAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAAT-AAAA
** *
87061617 ACTTTAATCTTTAAGAAAAATATTAGTT
128 GTTTTAATCTTTAAGAAAAATAAT-GTT
* * *
87061645 TTTTTTCGAAAAAAAATGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTT-AGTCATTT
1 TTTTTT--TAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTGTTTTTTAAGTCATTT
* * *
87061709 TAAAAGAAAGTTTAACTTTTTAAAACAAAGTTTTGATTTTTTTTTCAACTATTTTAAAATAAAAG
64 TAAAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAG
*
87061774 TTTTAATCTTTAAGAAAAAT-A-GTG
129 TTTTAATCTTTAAGAAAAATAATGTT
* * *
87061798 TTTTTTT--AAAAGGGAGAAAGTTTCGATTTTGAAAAATAAAAATCTATTTTTTAAGTCATTTTA
1 TTTTTTTAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTGTTTTTTAAGTCATTTTA
* * * * *
87061861 TAGGAAAGTCTAAATTTTTAAAATAAAGTTTTGA-TTTTTTTT-AACTATTT-ATAAT-AAGGTT
66 AAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAGTT
* * * *
87061922 TTGATTTTTAAGAAAAGTAATGAT
131 TTAATCTTTAAGAAAAATAATGTT
87061946 TTTTT
1 TTTTT
87061951 CTAAGGAAAA
Statistics
Matches: 542, Mismatches: 55, Indels: 40
0.85 0.09 0.06
Matches are distributed among these distances:
146 20 0.04
147 5 0.01
148 21 0.04
149 54 0.10
150 63 0.12
151 2 0.00
152 1 0.00
153 101 0.19
154 22 0.04
155 104 0.19
156 85 0.16
157 42 0.08
158 22 0.04
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (154 bp):
TTTTTTTAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTGTTTTTTAAGTCATTTTA
AAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAGTT
TTAATCTTTAAGAAAAATAATGTT
Found at i:87062473 original size:25 final size:24
Alignment explanation
Indices: 87062445--87062491 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
87062435 TCACTTGCAT
87062445 TTATACA-TTATATATTTAATGTTAA
1 TTATACACTT-TAT-TTTAATGTTAA
*
87062470 TTATGCACTTTATTTTAATGTT
1 TTATACACTTTATTTTAATGTT
87062492 TTATATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATACACTTTATTTTAATGTTAA
Found at i:87062549 original size:10 final size:10
Alignment explanation
Indices: 87062515--87062549 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
87062505 CACTTGTATA
87062515 ATTTTTATTT
1 ATTTTTATTT
*
87062525 ATTCTTATTT
1 ATTTTTATTT
87062535 CATTTTTATTT
1 -ATTTTTATTT
87062546 ATTT
1 ATTT
87062550 ACTGTCTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:87068449 original size:46 final size:44
Alignment explanation
Indices: 87068382--87068558 Score: 196
Period size: 46 Copynumber: 3.9 Consensus size: 44
87068372 TGTAACCTGC
* *
87068382 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGAGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGA-TTCGCAT
* *
87068428 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTCGC-A--T
* * *
87068474 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATTCGCAT
87068521 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
87068559 GCCCAAATAT
Statistics
Matches: 110, Mismatches: 12, Indels: 20
0.77 0.08 0.14
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 5 0.05
46 62 0.56
47 31 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTCGCAT
Found at i:87068548 original size:93 final size:93
Alignment explanation
Indices: 87068389--87068561 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
87068379 TGCCCATAAG
* *
87068389 CGAACTCGGACTCAACTCAACGAGCTCAGGAGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGAATTCGCATCCATAAGTGAACTCGGACTCAACTCA
87068454 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
87068482 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGGA-ATTCGCATCCATAAGTGAACTCGGACTCAACTC
87068546 AACGAGTTCGGATGCC
65 AACGAGTTCGGATGCC
87068562 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
92 3 0.04
93 73 0.96
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGAATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:87071895 original size:24 final size:24
Alignment explanation
Indices: 87071841--87071968 Score: 149
Period size: 24 Copynumber: 5.4 Consensus size: 24
87071831 GAGACATGGC
*
87071841 CAGTAAGCTCT-TCATGAGCTGATAA
1 CAGTAAGCTCTAT--TGAGCTGAAAA
87071866 CAGTAAGCTCTATTGAGCTGAAAA
1 CAGTAAGCTCTATTGAGCTGAAAA
*
87071890 CGGTAAGCTCTATTGAGCTGAAAA
1 CAGTAAGCTCTATTGAGCTGAAAA
* *
87071914 CGGTAAGCTCTATTGAGTTG-AAA
1 CAGTAAGCTCTATTGAGCTGAAAA
*
87071937 -AGTAAGCTCT-TCTGACCT-AAAA
1 CAGTAAGCTCTAT-TGAGCTGAAAA
87071959 CAGTAAGCTC
1 CAGTAAGCTC
87071969 ATACGAGCTA
Statistics
Matches: 93, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.01
22 16 0.17
23 12 0.13
24 52 0.56
25 11 0.12
26 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (24 bp):
CAGTAAGCTCTATTGAGCTGAAAA
Found at i:87071921 original size:48 final size:46
Alignment explanation
Indices: 87071842--87071968 Score: 168
Period size: 48 Copynumber: 2.7 Consensus size: 46
87071832 AGACATGGCC
*
87071842 AGTAAGCTCTTCATGAGCTGATAACAGTAAGCTCTATTGAGCTGAAA
1 AGTAAGCTCTTC-TGAGCTGAAAACAGTAAGCTCTATTGAGCTGAAA
* *
87071889 ACGGTAAGCTCTAT-TGAGCTGAAAACGGTAAGCTCTATTGAGTTGAAA
1 A--GTAAGCTCT-TCTGAGCTGAAAACAGTAAGCTCTATTGAGCTGAAA
*
87071937 AGTAAGCTCTTCTGACCT-AAAACAGTAAGCTC
1 AGTAAGCTCTTCTGAGCTGAAAACAGTAAGCTC
87071969 ATACGAGCTA
Statistics
Matches: 71, Mismatches: 5, Indels: 10
0.83 0.06 0.12
Matches are distributed among these distances:
45 14 0.20
46 14 0.20
47 1 0.01
48 32 0.45
49 9 0.13
50 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (46 bp):
AGTAAGCTCTTCTGAGCTGAAAACAGTAAGCTCTATTGAGCTGAAA
Found at i:87079567 original size:20 final size:20
Alignment explanation
Indices: 87079542--87079627 Score: 63
Period size: 20 Copynumber: 4.3 Consensus size: 20
87079532 TATTTCATAA
87079542 TAATTTTATGAATAATTAAT
1 TAATTTTATGAATAATTAAT
* *
87079562 TAATTTT-TTATTAATTAAAT
1 TAATTTTATGAATAATT-AAT
* * * *
87079582 AAATAATTAT-ATTTCA-TAA-
1 TAAT-TTTATGA-ATAATTAAT
87079601 TAATTTTATGAATAATTAAT
1 TAATTTTATGAATAATTAAT
87079621 TAATTTT
1 TAATTTT
87079628 CGATTAATTA
Statistics
Matches: 50, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
18 6 0.12
19 14 0.28
20 22 0.44
21 4 0.08
22 4 0.08
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (20 bp):
TAATTTTATGAATAATTAAT
Found at i:87079715 original size:178 final size:177
Alignment explanation
Indices: 87079411--87080109 Score: 1096
Period size: 178 Copynumber: 3.9 Consensus size: 177
87079401 AAAAGTTGGG
* * * * *
87079411 TCATATTTCATAATAATTTAACGAATAATTAATTAATTTCCGATTAATTATATAAATAATCATAT
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACAT
87079476 TTCATAATAATT-TAACGAATAATTAATTAA-TTTCTAATTAATTAAATAAATAATCATATTTCA
66 TTCATAATAATTCT-ACGAATAATTAATTAATTTTC-AATTAATTAAATAAATAATCATATTTCA
*
87079539 TAATAATTTTATGAATAATTAATTAATTTTTTATTAATTAAATAAATAA
129 TAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
*
87079588 TTATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACAT
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACA-
*
87079653 TTTTATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
65 TTTCATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
** *
87079718 AATAATTTTACAAATAATTAATTAATTTTCGATTAATTAAATAAATAA
130 AATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* *
87079766 TCATATTTCATAATAATTTTATGAACAATTAATTAATTTTTGATTAATTAAATAAATAATCACAT
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACA-
* * *
87079831 TTTTATAATAATTCTACGAATAATTAATTAATTGTCGATTAATTAAATAAATAATCATATTTCAT
65 TTTCATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
87079896 AATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
130 AATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* * * *
87079944 TCATATTTCATAATAGTTTTAAGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATAT
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACAT
* ** * *
87080009 TTCATAATAATTCTATGAATAATTAATTAATTTTTGATTAATTAATTAATTAATCATATTTCATA
66 TTCATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCATA
* **
87080074 ATAATTCTATGAATAATTAATTAATTTGAGATTAAT
131 ATAATTTTATGAATAATTAATTAATTTTTGATTAAT
87080110 CATTCATTTA
Statistics
Matches: 487, Mismatches: 32, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
177 151 0.31
178 331 0.68
179 5 0.01
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (177 bp):
TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACAT
TTCATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCATA
ATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
Found at i:87079744 original size:237 final size:234
Alignment explanation
Indices: 87079415--87080109 Score: 1086
Period size: 237 Copynumber: 2.9 Consensus size: 234
87079405 GTTGGGTCAT
* *
87079415 ATTTCATAATAATTTAACGAATAATTAATTAATTTCCGATTAATTATATAAATAATCATATTTCA
1 ATTTCATAATAATTT-ACGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCATATTTCA
* * *
87079480 TAATAATTTAACGAATAATTAATTAATTTCTAATTAATTAAATAAATAATCATATTTCATAATAA
65 TAATAATTTTACAAATAATTAATTAATTT-TGATTAATTAAATAAATAATCATATTTCATAATAA
* * *
87079545 TTTTATGAATAATTAATTAATTTTTTATTAATTAAATAAATAATTATATTTCATAATAATTTTAT
129 TTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATATTTCATAATAATTCTAT
87079610 GAATAATTAATTAATTTTCGATTAATTAAATAAATAATCAC
194 GAATAATTAATTAATTTTCGATTAATTAAATAAATAATCAC
* *
87079651 ATTTTTATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTC
1 A-TTTCATAATAATT-TACGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCATATTTC
87079716 ATAATAATTTTACAAATAATTAATTAATTTTCGATTAATTAAATAAATAATCATATTTCATAATA
64 ATAATAATTTTACAAATAATTAATTAATTTT-GATTAATTAAATAAATAATCATATTTCATAATA
* * *
87079781 ATTTTATGAACAATTAATTAATTTTTGATTAATTAAATAAATAATCACATTTTTATAATAATTCT
128 ATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATA-TTTCATAATAATTCT
* * *
87079846 ACGAATAATTAATTAATTGTCGATTAATTAAATAAATAATCAT
192 ATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCAC
* *
87079889 ATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATATTTCA
1 ATTTCATAATAA-TTTACGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCATATTTCA
*
87079954 TAATAGTTTTA-AGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATATTTCATAATA
65 TAATAATTTTACA-AATAATTAATTAA-TTTTGATTAATTAAATAAATAATCATATTTCATAATA
* * *
87080018 ATTCTATGAATAATTAATTAATTTTTGATTAATTAATTAATTAATCATATTTCATAATAATTCTA
128 ATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATATTTCATAATAATTCTA
**
87080083 TGAATAATTAATTAATTTGAGATTAAT
193 TGAATAATTAATTAATTTTCGATTAAT
87080110 CATTCATTTA
Statistics
Matches: 421, Mismatches: 31, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
236 41 0.10
237 319 0.76
238 61 0.14
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (234 bp):
ATTTCATAATAATTTACGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCATATTTCAT
AATAATTTTACAAATAATTAATTAATTTTGATTAATTAAATAAATAATCATATTTCATAATAATT
TTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATATTTCATAATAATTCTATGA
ATAATTAATTAATTTTCGATTAATTAAATAAATAATCAC
Found at i:87080121 original size:59 final size:59
Alignment explanation
Indices: 87079411--87080109 Score: 1056
Period size: 59 Copynumber: 11.8 Consensus size: 59
87079401 AAAAGTTGGG
* * ** *
87079411 TCATATTTCATAATAATTTAACGAATAATTAATTAATTTCCGATTAATTATATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* * * *
87079470 TCATATTTCATAATAATTTAACGAATAATTAATTAATTTCTAATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
*
87079529 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTTATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* *
87079588 TTATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* * * * **
87079647 TCACATTTTTATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAA
1 TCATA-TTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
** *
87079707 TCATATTTCATAATAATTTTACAAATAATTAATTAATTTTCGATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
*
87079766 TCATATTTCATAATAATTTTATGAACAATTAATTAATTTTTGATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* * * * * *
87079825 TCACATTTTTATAATAATTCTACGAATAATTAATTAATTGTCGATTAATTAAATAAATAA
1 TCATA-TTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
87079885 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* *
87079944 TCATATTTCATAATAGTTTTAAGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* * *
87080003 TCATATTTCATAATAATTCTATGAATAATTAATTAATTTTTGATTAATTAATTAATTAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* **
87080062 TCATATTTCATAATAATTCTATGAATAATTAATTAATTTGAGATTAAT
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAAT
87080110 CATTCATTTA
Statistics
Matches: 591, Mismatches: 47, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
59 485 0.82
60 106 0.18
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (59 bp):
TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
Found at i:87087281 original size:27 final size:27
Alignment explanation
Indices: 87087198--87087326 Score: 109
Period size: 27 Copynumber: 4.8 Consensus size: 27
87087188 ATTACCCCTA
* *
87087198 ATTTGTAAAGTTACCAAAATACCCTTG
1 ATTTGTAAAATTACCAAAATACCCTCG
* ** *
87087225 A-TTGTGAAATTACTGAAATACCCTCT
1 ATTTGTAAAATTACCAAAATACCCTCG
*
87087251 ATTTGTAAAATTACCAAAATACCCCCG
1 ATTTGTAAAATTACCAAAATACCCTCG
* * * * *
87087278 ATTTGTGATATTATCAAAATGCCCTTG
1 ATTTGTAAAATTACCAAAATACCCTCG
* *
87087305 -TAATGTAAAATTACCGAAATAC
1 AT-TTGTAAAATTACCAAAATAC
87087327 TCTTGTAGTG
Statistics
Matches: 77, Mismatches: 23, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
26 21 0.27
27 56 0.73
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTACCAAAATACCCTCG
Found at i:87087331 original size:27 final size:27
Alignment explanation
Indices: 87087294--87087372 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
87087284 GATATTATCA
* * *
87087294 AAATGCCCTTGTAATGTAAAATTACCG
1 AAATACCCTTGTAGTGTAAAATGACCG
*
87087321 AAATACTCTTGTAGTGTAAAATGACCG
1 AAATACCCTTGTAGTGTAAAATGACCG
* *
87087348 ACATACCCTTGTAGGGTAAAATGAC
1 AAATACCCTTGTAGTGTAAAATGAC
87087373 TGATTTGCCC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGTAGTGTAAAATGACCG
Found at i:87090954 original size:21 final size:21
Alignment explanation
Indices: 87090928--87090969 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
87090918 ATATCATATT
*
87090928 TTTTAGCGGCGTTTTTATGAG
1 TTTTAGCGGCATTTTTATGAG
* *
87090949 TTTTAGTGGTATTTTTATGAG
1 TTTTAGCGGCATTTTTATGAG
87090970 AAGCACTCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.05, G:0.26, T:0.52
Consensus pattern (21 bp):
TTTTAGCGGCATTTTTATGAG
Found at i:87106932 original size:27 final size:27
Alignment explanation
Indices: 87106776--87107196 Score: 404
Period size: 27 Copynumber: 15.7 Consensus size: 27
87106766 TACCCTATAG
* * * *
87106776 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* * *
87106803 GGGTATTTTGGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
87106830 GGGTATTTCGATAATTTTACAAAT-TA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
87106856 GGGGTGTTTCGATAATATTACAAATCGA
1 -GGGTATTTCGGTAATTTTACAAATCGA
*
87106884 GGGTATTTCGGTAATTTTACAAATAGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
87106911 GGGTATTTTGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
87106938 GGGTGTTTCAGTACTTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * * *
87106965 GGGTGTTTCAGTCATTTCACAAAGT-GG
1 GGGTATTTCGGTAATTTTACAAA-TCGA
* * *
87106992 GGGTATTTCTGTAATTTCACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
87107019 GGGTATTTCAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
87107045 GGGTATTTTGGTAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
87107072 GGGTATTTCGATAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
*
87107099 GGGTATTTCGTTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * ** * *
87107126 TGGTGTTTCAATAATTTCACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
87107153 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
87107180 -GGTATTTCAGTAATTTT
1 GGGTATTTCGGTAATTTT
87107197 CTCTTTATTA
Statistics
Matches: 335, Mismatches: 53, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
26 40 0.12
27 291 0.87
28 4 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:87107545 original size:28 final size:28
Alignment explanation
Indices: 87107509--87107615 Score: 178
Period size: 28 Copynumber: 3.8 Consensus size: 28
87107499 CTCAATCTCG
* *
87107509 TTCACATGGCCCATCAAGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
87107537 TTCATATGGCCCATCAGGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
87107565 TTCATATGGCCCATCAGGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
* *
87107593 TTCATATGGCCTATTAGGCCCAA
1 TTCATATGGCCCATCAGGCCCAA
87107616 CTACTTCCCA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 75 1.00
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.22
Consensus pattern (28 bp):
TTCATATGGCCCATCAGGCCCAATCACA
Found at i:87110774 original size:38 final size:38
Alignment explanation
Indices: 87110731--87110806 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
87110721 TTCATCCTTT
* *
87110731 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGAAGGAA
87110769 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGAAGGAA
1 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGAAGGAA
87110807 GGAGTTCTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGAAGGAA
Found at i:87112088 original size:40 final size:40
Alignment explanation
Indices: 87111994--87112138 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
87111984 TACTCGAATG
*
87111994 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
87112035 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
87112075 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
87112115 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
87112139 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:87115321 original size:7 final size:7
Alignment explanation
Indices: 87115309--87115335 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
87115299 CCAAAAGCCA
87115309 TAAACCC
1 TAAACCC
87115316 TAAACCC
1 TAAACCC
87115323 TAAACCC
1 TAAACCC
87115330 TAAACC
1 TAAACC
87115336 TTAAGAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:87116679 original size:20 final size:20
Alignment explanation
Indices: 87116588--87116679 Score: 54
Period size: 20 Copynumber: 4.8 Consensus size: 20
87116578 ATTAAGAATG
87116588 TTATTAAATTATATATTATT-
1 TTATTAAATTATAT-TTATTA
*
87116608 TTATTAAATTGTATTTA--A
1 TTATTAAATTATATTTATTA
* * * * *
87116626 -TAAT-ACTTATGTTAAAATA
1 TTATTAAATTATATT-TATTA
*
87116645 TGATTAAA-T-TATTTATTA
1 TTATTAAATTATATTTATTA
87116663 TTATTAAATTATATTTA
1 TTATTAAATTATATTTA
87116680 ATAATAATTT
Statistics
Matches: 51, Mismatches: 13, Indels: 16
0.64 0.16 0.20
Matches are distributed among these distances:
16 6 0.12
17 4 0.08
18 10 0.20
19 8 0.16
20 22 0.43
21 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (20 bp):
TTATTAAATTATATTTATTA
Found at i:87116696 original size:55 final size:55
Alignment explanation
Indices: 87116557--87116698 Score: 155
Period size: 55 Copynumber: 2.5 Consensus size: 55
87116547 TGATTTTTTT
* *
87116557 AATTCATATTTTAATAATAA--TATTAAGAATGTTATTAAATTATATATTATTTTATTA
1 AATT-ATA-TTTAATAATAATTTATTAA-AATATGATTAAATTATATATTA-TTTATTA
* * * *
87116614 AATTGTATTTAATAATACTTATGTTAAAATATGATTAAATTATTTATTA-TTATTA
1 AATTATATTTAATAATAATT-TATTAAAATATGATTAAATTATATATTATTTATTA
87116669 AATTATATTTAATAATAATTTTATTAAAAT
1 AATTATATTTAATAATAA-TTTATTAAAAT
87116699 TTAAAAATAA
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
55 40 0.56
56 4 0.06
57 23 0.32
58 5 0.07
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (55 bp):
AATTATATTTAATAATAATTTATTAAAATATGATTAAATTATATATTATTTATTA
Found at i:87116896 original size:16 final size:16
Alignment explanation
Indices: 87116860--87116926 Score: 89
Period size: 16 Copynumber: 4.2 Consensus size: 16
87116850 TGAATTATTG
* *
87116860 ATTACAGGTCTATTCT
1 ATTACAGCTCTATTCC
* *
87116876 TTTACAGCTCTACTCC
1 ATTACAGCTCTATTCC
*
87116892 ATTACAGCTCTATTAC
1 ATTACAGCTCTATTCC
87116908 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
87116924 ATT
1 ATT
87116927 CCTCCCAACC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:87117381 original size:32 final size:32
Alignment explanation
Indices: 87117345--87117406 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
87117335 CATAAACTTA
*
87117345 TAAATTAATTACTTAAATTTAATAACTCATGC
1 TAAATTAATTAATTAAATTTAATAACTCATGC
* *
87117377 TAAATTAATTAATTTAATTTTATAACTCAT
1 TAAATTAATTAATTAAATTTAATAACTCAT
87117407 ATTGATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.45
Consensus pattern (32 bp):
TAAATTAATTAATTAAATTTAATAACTCATGC
Found at i:87119241 original size:12 final size:14
Alignment explanation
Indices: 87119208--87119243 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
87119198 CATATCTAAT
87119208 ATCTG-ATCTGTAC
1 ATCTGTATCTGTAC
87119221 ATCTGTATCTGTA-
1 ATCTGTATCTGTAC
87119234 AT-TGTATCTG
1 ATCTGTATCTG
87119244 AGATGGGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 8 0.36
13 7 0.32
14 7 0.32
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (14 bp):
ATCTGTATCTGTAC
Found at i:87120048 original size:25 final size:25
Alignment explanation
Indices: 87120014--87120063 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
87120004 TTCCAGCCGT
87120014 TATTCTCATACAAATTGATAACAAC
1 TATTCTCATACAAATTGATAACAAC
87120039 TATTCTCATACAAATTGATAACAAC
1 TATTCTCATACAAATTGATAACAAC
87120064 CCATGAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.32
Consensus pattern (25 bp):
TATTCTCATACAAATTGATAACAAC
Found at i:87121527 original size:29 final size:31
Alignment explanation
Indices: 87121476--87121548 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 31
87121466 TATATATAGA
*
87121476 CTAAATAAAATAATAAAACAATAA-AA-TAT
1 CTAATTAAAATAATAAAACAATAATAATTAT
* *
87121505 CTTATTAAAATATTAAATA-AATAATAATTAT
1 CTAATTAAAATAATAAA-ACAATAATAATTAT
87121536 CTAATT-AAATAAT
1 CTAATTAAAATAAT
87121549 TATAAAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 19 0.53
30 9 0.25
31 8 0.22
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.34
Consensus pattern (31 bp):
CTAATTAAAATAATAAAACAATAATAATTAT
Found at i:87122129 original size:21 final size:23
Alignment explanation
Indices: 87122105--87122149 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
87122095 CTCTGGACTG
87122105 TTTGGTTT-TT-AACTATTGGTT
1 TTTGGTTTGTTCAACTATTGGTT
*
87122126 TTTGGTTTGTTCATCTATTGGTT
1 TTTGGTTTGTTCAACTATTGGTT
87122149 T
1 T
87122150 GCTATGGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 2 0.10
23 11 0.52
ACGTcount: A:0.11, C:0.07, G:0.20, T:0.62
Consensus pattern (23 bp):
TTTGGTTTGTTCAACTATTGGTT
Found at i:87122699 original size:15 final size:16
Alignment explanation
Indices: 87122670--87122699 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87122660 ATGTTCTCCA
87122670 TCAATTGTATATAATT
1 TCAATTGTATATAATT
87122686 TCAATTGT-TATAAT
1 TCAATTGTATATAAT
87122700 AACAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.50
Consensus pattern (16 bp):
TCAATTGTATATAATT
Found at i:87126272 original size:22 final size:22
Alignment explanation
Indices: 87126247--87126288 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
87126237 CATGATAACC
*
87126247 CCATCCAACCCTGCACTTCCCT
1 CCATCCAACCCTACACTTCCCT
*
87126269 CCATCCATCCCTACACTTCC
1 CCATCCAACCCTACACTTCC
87126289 TGTAGGGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.55, G:0.02, T:0.24
Consensus pattern (22 bp):
CCATCCAACCCTACACTTCCCT
Found at i:87126833 original size:8 final size:8
Alignment explanation
Indices: 87126820--87126859 Score: 71
Period size: 8 Copynumber: 5.0 Consensus size: 8
87126810 TCACAAATGC
87126820 CGGCTTTT
1 CGGCTTTT
87126828 CGGCTTTT
1 CGGCTTTT
*
87126836 CAGCTTTT
1 CGGCTTTT
87126844 CGGCTTTT
1 CGGCTTTT
87126852 CGGCTTTT
1 CGGCTTTT
87126860 GCCGATCTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.03, C:0.25, G:0.23, T:0.50
Consensus pattern (8 bp):
CGGCTTTT
Found at i:87130938 original size:29 final size:29
Alignment explanation
Indices: 87130873--87131007 Score: 202
Period size: 29 Copynumber: 4.7 Consensus size: 29
87130863 ACATACATGT
*
87130873 ATATGGCCCACTAGGCCCAA-TCTCATTC
1 ATATGGCCCACTAGGCCCAATTCACATTC
* *
87130901 ATATGGCCCATCT-GGCCCAGTTCATATTC
1 ATATGGCCCA-CTAGGCCCAATTCACATTC
*
87130930 TTATGGCCCACTAGGCCCAATTCACATTC
1 ATATGGCCCACTAGGCCCAATTCACATTC
87130959 ATATGGCCCACTAGGCCCAATTCACATTC
1 ATATGGCCCACTAGGCCCAATTCACATTC
*
87130988 ATATGGCCCATTAGGCCCAA
1 ATATGGCCCACTAGGCCCAA
87131008 ATCATATTAT
Statistics
Matches: 96, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
28 18 0.19
29 78 0.81
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAATTCACATTC
Found at i:87131252 original size:16 final size:16
Alignment explanation
Indices: 87131231--87131266 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
87131221 GTAGCCTAAC
87131231 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
87131247 TTTCAGCTTTTCGACT
1 TTTCAGCTTTTCGACA
87131263 TTTC
1 TTTC
87131267 GGCATTTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.25, G:0.11, T:0.50
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:87131264 original size:24 final size:23
Alignment explanation
Indices: 87131237--87131289 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
87131227 TAACTTTCAG
*
87131237 CTTTTCGACATTTCAGCTTTTCGA
1 CTTTTCGACATTTCAGATTTT-GA
* *
87131261 CTTTTCGGCATTTCAGATTTTGC
1 CTTTTCGACATTTCAGATTTTGA
87131284 CTTTTC
1 CTTTTC
87131290 ATTGTGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.13, C:0.25, G:0.13, T:0.49
Consensus pattern (23 bp):
CTTTTCGACATTTCAGATTTTGA
Found at i:87131274 original size:16 final size:16
Alignment explanation
Indices: 87131231--87131274 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
87131221 GTAGCCTAAC
*
87131231 TTTCAGCTTTTCGACA
1 TTTCAGCATTTCGACA
* *
87131247 TTTCAGCTTTTCGACT
1 TTTCAGCATTTCGACA
*
87131263 TTTCGGCATTTC
1 TTTCAGCATTTC
87131275 AGATTTTGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.14, C:0.25, G:0.14, T:0.48
Consensus pattern (16 bp):
TTTCAGCATTTCGACA
Found at i:87137385 original size:39 final size:39
Alignment explanation
Indices: 87137328--87137407 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
87137318 TCCAATCACA
*
87137328 TATCGAGCATATTTCTCATAAGTTACACACGTATATACT
1 TATCGAGCATATTGCTCATAAGTTACACACGTATATACT
87137367 TATCGAGCATATTGCTCATAAGTTACACACGTATATACT
1 TATCGAGCATATTGCTCATAAGTTACACACGTATATACT
87137406 TA
1 TA
87137408 CACTTATGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (39 bp):
TATCGAGCATATTGCTCATAAGTTACACACGTATATACT
Found at i:87141205 original size:18 final size:18
Alignment explanation
Indices: 87141182--87141218 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
87141172 AAAGCCGTCG
87141182 GTGGATCCACGATTGTCA
1 GTGGATCCACGATTGTCA
87141200 GTGGATCCACGATTGTCA
1 GTGGATCCACGATTGTCA
87141218 G
1 G
87141219 GCAACCATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (18 bp):
GTGGATCCACGATTGTCA
Found at i:87141712 original size:29 final size:30
Alignment explanation
Indices: 87141645--87141763 Score: 135
Period size: 29 Copynumber: 4.2 Consensus size: 30
87141635 TACATACATG
*
87141645 CATATGACCCA-CTAGGCCCAA-TC-TCATT
1 CATATGGCCCATCTAGGCCCAATTCAT-ATT
*
87141673 CATATGACCCATCT-GGCCCAATTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
87141702 CTTATGGCCCA-CTAGGCCCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
*
87141731 CATATGGCCCAT-TAGGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
87141760 -ATAT
1 CATAT
87141764 TCATGCTCAA
Statistics
Matches: 80, Mismatches: 6, Indels: 10
0.83 0.06 0.10
Matches are distributed among these distances:
28 24 0.30
29 55 0.69
30 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.29
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:87141742 original size:58 final size:57
Alignment explanation
Indices: 87141647--87141759 Score: 165
Period size: 58 Copynumber: 2.0 Consensus size: 57
87141637 CATACATGCA
* *
87141647 TATGACCCACTAGGCCCAATCTCATTCATATGACCCATCT-GGCCCAATTCATATTCT
1 TATGACCCACTAGGCCCAATCACATTCATATGACCCAT-TAGGCCCAAATCATATTCT
* *
87141704 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAAATCATATT
1 TATGACCCACTAGGCCCAA-TCACATTCATATGACCCATTAGGCCCAAATCATATT
87141760 ATATTCATGC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
57 19 0.38
58 31 0.62
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.28
Consensus pattern (57 bp):
TATGACCCACTAGGCCCAATCACATTCATATGACCCATTAGGCCCAAATCATATTCT
Found at i:87141854 original size:18 final size:19
Alignment explanation
Indices: 87141831--87141867 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
87141821 TGGGCCCAAC
87141831 AGCCCA-TCAGGCCCATTT
1 AGCCCACTCAGGCCCATTT
*
87141849 AGCCCACTCTGGCCCATTT
1 AGCCCACTCAGGCCCATTT
87141868 GGCCAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (19 bp):
AGCCCACTCAGGCCCATTT
Found at i:87141995 original size:16 final size:16
Alignment explanation
Indices: 87141974--87142009 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
87141964 GTAGCCTAAC
87141974 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
87141990 TTTCAGCTTTTCGACT
1 TTTCAGCTTTTCGACA
87142006 TTTC
1 TTTC
87142010 GGCATTTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.25, G:0.11, T:0.50
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:87142007 original size:24 final size:23
Alignment explanation
Indices: 87141980--87142032 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
87141970 TAACTTTCAG
*
87141980 CTTTTCGACATTTCAGCTTTTCGA
1 CTTTTCGACATTTCAGATTTT-GA
* *
87142004 CTTTTCGGCATTTCAGATTTTGC
1 CTTTTCGACATTTCAGATTTTGA
87142027 CTTTTC
1 CTTTTC
87142033 ATTGTGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.13, C:0.25, G:0.13, T:0.49
Consensus pattern (23 bp):
CTTTTCGACATTTCAGATTTTGA
Found at i:87142017 original size:16 final size:16
Alignment explanation
Indices: 87141974--87142017 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
87141964 GTAGCCTAAC
*
87141974 TTTCAGCTTTTCGACA
1 TTTCAGCATTTCGACA
* *
87141990 TTTCAGCTTTTCGACT
1 TTTCAGCATTTCGACA
*
87142006 TTTCGGCATTTC
1 TTTCAGCATTTC
87142018 AGATTTTGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.14, C:0.25, G:0.14, T:0.48
Consensus pattern (16 bp):
TTTCAGCATTTCGACA
Found at i:87150238 original size:109 final size:110
Alignment explanation
Indices: 87150097--87150316 Score: 415
Period size: 109 Copynumber: 2.0 Consensus size: 110
87150087 TAACTACTTA
87150097 TTTATAACAACAATAATACCAATTAAGAGTAAGATAAATTAGGTGGACTTCCAAGTTGATTCGTG
1 TTTATAACAACAATAATACCAATTAAGAGTAAGATAAATTAGGTGGACTTCCAAGTTGATTCGTG
*
87150162 GTTTGTCCTTATTCTCAAGGGCTGAGAGAAAAAATCCGATCAAAG
66 GTTTGTCCTTACTCTCAAGGGCTGAGAGAAAAAATCCGATCAAAG
87150207 TTTAT-ACAACAATAATACCAATTAAGAGTAAGATAAATTAGGTGGACTTCCAAGTTGATTCGTG
1 TTTATAACAACAATAATACCAATTAAGAGTAAGATAAATTAGGTGGACTTCCAAGTTGATTCGTG
*
87150271 GTTTGTCGTTACTCTCAAGGGCTGAGAGAAAAAATCCGATCAAAG
66 GTTTGTCCTTACTCTCAAGGGCTGAGAGAAAAAATCCGATCAAAG
87150316 T
1 T
87150317 GAAAGTTGGT
Statistics
Matches: 108, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
109 103 0.95
110 5 0.05
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (110 bp):
TTTATAACAACAATAATACCAATTAAGAGTAAGATAAATTAGGTGGACTTCCAAGTTGATTCGTG
GTTTGTCCTTACTCTCAAGGGCTGAGAGAAAAAATCCGATCAAAG
Found at i:87150556 original size:22 final size:23
Alignment explanation
Indices: 87150507--87150559 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
87150497 AGTTATTATT
*
87150507 TTTTAAAATATTTATATAAAAAA
1 TTTTAAAATATTTATACAAAAAA
*
87150530 TTTTAAAAT-TTTAT-CAAATAA
1 TTTTAAAATATTTATACAAAAAA
87150551 TATTTAAAA
1 T-TTTAAAA
87150560 ATCATAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 6 0.22
22 12 0.44
23 9 0.33
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
TTTTAAAATATTTATACAAAAAA
Found at i:87150560 original size:23 final size:21
Alignment explanation
Indices: 87150508--87150561 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
87150498 GTTATTATTT
87150508 TTTAAAATATTTATATAAAAAA
1 TTTAAAA-ATTTATATAAAAAA
*
87150530 TTTTAAAATTT-TATCAAATAATA
1 TTTAAAAATTTATAT-AAA-AA-A
87150553 TTTAAAAAT
1 TTTAAAAAT
87150562 CATAAAACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 3 0.11
21 7 0.26
22 8 0.30
23 9 0.33
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAAAAATTTATATAAAAAA
Found at i:87156037 original size:20 final size:18
Alignment explanation
Indices: 87155987--87156095 Score: 66
Period size: 20 Copynumber: 5.9 Consensus size: 18
87155977 CTATAAGATA
87155987 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
87156004 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
**
87156024 AATATTAAATTAATAAAAT
1 AATATTAAATTAAT-ATTT
*
87156043 ACTATTAAGA-TAAGTA-TT
1 AATATTAA-ATTAA-TATTT
* *
87156061 AA-ATTAAATTCACTATTA
1 AATATTAAATT-AATATTT
87156079 AATTATTAAATTAATAT
1 AA-TATTAAATTAATAT
87156096 CATTTTTGGA
Statistics
Matches: 71, Mismatches: 9, Indels: 22
0.70 0.09 0.22
Matches are distributed among these distances:
16 1 0.01
17 19 0.27
18 7 0.10
19 18 0.25
20 26 0.37
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:87158503 original size:18 final size:19
Alignment explanation
Indices: 87158466--87158503 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
87158456 TTGTTTAGTA
87158466 TAGCTTAAAAAATCACTTT
1 TAGCTTAAAAAATCACTTT
* *
87158485 TAGCTTGAACAAT-ACTTT
1 TAGCTTAAAAAATCACTTT
87158503 T
1 T
87158504 GGAAGAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (19 bp):
TAGCTTAAAAAATCACTTT
Found at i:87159274 original size:21 final size:22
Alignment explanation
Indices: 87159248--87159301 Score: 83
Period size: 21 Copynumber: 2.5 Consensus size: 22
87159238 CTTTATTAAG
*
87159248 ACAAACAGACCCTTAAAA-AAA
1 ACAAACAGACCCCTAAAAGAAA
87159269 ACAAACAGACCCCTAAAAGAAA
1 ACAAACAGACCCCTAAAAGAAA
*
87159291 ATAAACAGACC
1 ACAAACAGACC
87159302 AAACAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.59, C:0.26, G:0.07, T:0.07
Consensus pattern (22 bp):
ACAAACAGACCCCTAAAAGAAA
Found at i:87161768 original size:40 final size:40
Alignment explanation
Indices: 87161700--87161827 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
87161690 TCTTCAAGAT
87161700 TTAG-CCGGATATAACAACTCA-CACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACT-AGCACAAATGCCTTCGGGTC
* *
87161739 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* * * *
87161779 ATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
*
87161819 TTAGTCCGG
1 TTAGCCCGG
87161828 TTATCATCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
39 6 0.08
40 68 0.91
41 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:87165920 original size:16 final size:17
Alignment explanation
Indices: 87165889--87165921 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
87165879 TTCATAAACA
*
87165889 TATATCACTCATTTCAT
1 TATATCAATCATTTCAT
87165906 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
87165922 GCACCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:87166327 original size:101 final size:101
Alignment explanation
Indices: 87166200--87166412 Score: 320
Period size: 101 Copynumber: 2.1 Consensus size: 101
87166190 CATGGCCCTG
* *
87166200 CCATGGTCTTACATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATCACAATGCCATAGCCTA
1 CCATGGTCTTACATTCGAAGTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCTA
* * *
87166265 CCTATGGTCTTCCATATAAATATTGCCATGGTCCAA
66 CCTATGGTCTTACATATAAACACTGCCATGGTCCAA
* * *
87166301 CCATGGTCTTACGTTC-AAGGTGCCATAACCCAGTTATGGTCTTTTCATTAAAATGCCATAGCCT
1 CCATGGTCTTACATTCGAA-GTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCT
* *
87166365 AGCTATGGTCTTACATATAAACACTGTCATGGTCCAA
65 ACCTATGGTCTTACATATAAACACTGCCATGGTCCAA
87166402 CCATGGTCTTA
1 CCATGGTCTTA
87166413 TCCGTCAAAA
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 1 0.01
101 100 0.99
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (101 bp):
CCATGGTCTTACATTCGAAGTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCTA
CCTATGGTCTTACATATAAACACTGCCATGGTCCAA
Found at i:87168112 original size:13 final size:13
Alignment explanation
Indices: 87168096--87168120 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87168086 TTTTTCATGA
87168096 AAATTCTTTAATC
1 AAATTCTTTAATC
87168109 AAATTCTTTAAT
1 AAATTCTTTAAT
87168121 TGAACAGTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATTCTTTAATC
Found at i:87169883 original size:27 final size:27
Alignment explanation
Indices: 87169501--87169875 Score: 479
Period size: 27 Copynumber: 13.9 Consensus size: 27
87169491 AAAGTACTCC
*
87169501 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
87169528 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
87169555 CAATTTTTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87169582 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
87169609 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
**
87169636 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87169663 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
87169690 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87169717 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
87169744 TGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
87169771 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
87169798 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
87169825 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
87169852 CGATTTACAGAATTACCGTTTTAC
1 CGATTTACAGAATTACCGTTTTAC
87169876 AATTGATTGT
Statistics
Matches: 297, Mismatches: 43, Indels: 16
0.83 0.12 0.04
Matches are distributed among these distances:
26 4 0.01
27 289 0.97
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:87170063 original size:27 final size:27
Alignment explanation
Indices: 87169888--87170083 Score: 205
Period size: 27 Copynumber: 7.3 Consensus size: 27
87169878 TTGATTGTGA
* *
87169888 AATTACTGAAATAACCC-TGTAAGGTAG
1 AATTACCGAAAT-ACCCTTGTAGGGTAG
* * * *
87169915 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
87169942 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
87169969 AATTACCAAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
87169996 AATTATCGAAATATCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
87170023 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
87170050 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
87170077 AATTACC
1 AATTACC
87170084 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 4 0.03
27 142 0.97
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:87170325 original size:27 final size:26
Alignment explanation
Indices: 87170282--87170364 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
87170272 CGGAGGAAAC
* *
87170282 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGATCTGCCAC-AATATCT
87170309 GTTCTGGTGGATCTGCCACAATATCT
1 GTTCTGGTGGATCTGCCACAATATCT
* *
87170335 GTATTTGGT-GACTCTGTCACAATATCT
1 GT-TCTGGTGGA-TCTGCCACAATATCT
87170362 GTT
1 GTT
87170365 GACCGATCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 12 0.24
27 38 0.76
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGATCTGCCACAATATCT
Found at i:87170484 original size:22 final size:22
Alignment explanation
Indices: 87170452--87170510 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
87170442 CCCGTTATTA
*
87170452 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
87170474 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
87170496 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
87170511 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:87170697 original size:27 final size:27
Alignment explanation
Indices: 87170675--87170749 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
87170665 TAGGTGGGTT
*
87170675 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
87170702 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
87170729 TGTCACGATATCTGT-TCTGGT
1 TGCCACAATATCTGTATCTGGT
87170750 AGCCATGCTG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 6 0.14
27 36 0.84
28 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:87170902 original size:6 final size:6
Alignment explanation
Indices: 87170891--87170997 Score: 105
Period size: 6 Copynumber: 17.8 Consensus size: 6
87170881 CTGTCATGTA
* * *
87170891 ATTCTG ATTCTG ATTCTG -TTACTA ATACTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
87170939 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTTTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
87170987 ATTCTG ATTCT
1 ATTCTG ATTCT
87170998 CATTTTGGTT
Statistics
Matches: 85, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
5 7 0.08
6 73 0.86
7 4 0.05
8 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:87170932 original size:36 final size:36
Alignment explanation
Indices: 87170891--87170971 Score: 144
Period size: 36 Copynumber: 2.2 Consensus size: 36
87170881 CTGTCATGTA
87170891 ATTCTGATTCTGATTCTGTTACTAATACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTAATTCTG
* *
87170927 ATTCTGATTCTGATTCTGTTACTAATATTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTAATTCTG
87170963 ATTCTGATT
1 ATTCTGATT
87170972 TTGTTACTGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.23, C:0.15, G:0.12, T:0.49
Consensus pattern (36 bp):
ATTCTGATTCTGATTCTGTTACTAATACTAATTCTG
Found at i:87170995 original size:36 final size:33
Alignment explanation
Indices: 87170891--87170997 Score: 121
Period size: 36 Copynumber: 3.2 Consensus size: 33
87170881 CTGTCATGTA
87170891 ATTCTGATTCTGATTCTGTTACTAATACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACT-AT-CT-ATTCTG
*
87170927 ATTCTGATTCTGATTCTGTTACTA-ATA-T-TG
1 ATTCTGATTCTGATTCTGTTACTATCTATTCTG
*
87170957 ATTCTGATTCTGATTTTGTTACTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACT-A-TCT-ATTCTG
87170993 ATTCT
1 ATTCT
87170998 CATTTTGGTT
Statistics
Matches: 62, Mismatches: 3, Indels: 12
0.81 0.04 0.16
Matches are distributed among these distances:
30 24 0.39
31 2 0.03
32 1 0.02
33 2 0.03
34 1 0.02
35 2 0.03
36 30 0.48
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.50
Consensus pattern (33 bp):
ATTCTGATTCTGATTCTGTTACTATCTATTCTG
Found at i:87171003 original size:30 final size:30
Alignment explanation
Indices: 87170866--87171018 Score: 150
Period size: 30 Copynumber: 5.1 Consensus size: 30
87170856 TTGCATTCAC
* * * *
87170866 ATTCTGATCCTGATTCTGTCATGTAATTCTG
1 ATTCTGATTCTGATTTTGTTA-CTAATTCTG
* **
87170897 ATTCTGATTCTG-TTACTAATACTAATTCTG
1 ATTCTGATTCTGATT-TTGTTACTAATTCTG
*
87170927 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTTTGTTACTAAT-TCTG
*
87170957 ATTCTGATTCTGATTTTGTTACTGATTCTG
1 ATTCTGATTCTGATTTTGTTACTAATTCTG
* *
87170987 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTTT-GTTACTAATTCTG
87171017 AT
1 AT
87171019 AATGTTTCTT
Statistics
Matches: 105, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
29 1 0.01
30 84 0.80
31 20 0.19
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTTTGTTACTAATTCTG
Found at i:87173026 original size:27 final size:27
Alignment explanation
Indices: 87172996--87173056 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
87172986 CGACTTGTAA
87172996 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAG
****
87173023 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
87173050 AATTACC
1 AATTACC
87173057 GTTTTACCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:87173054 original size:54 final size:54
Alignment explanation
Indices: 87173013--87173395 Score: 495
Period size: 54 Copynumber: 7.1 Consensus size: 54
87173003 AAAGTACTCC
87173013 CGATTTACAGAATTACCGTTTTACCCTC-GATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCT
* ** * *
87173067 CAATTTTTAAAATTATCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* * * *
87173121 C-AGTTTACAAAATTACCTTTTTACCCTCAGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* * *
87173175 CGATTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* * *
87173229 CGATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* *
87173283 CGATTTACAGAATTACTGTTTTACCCTCGATTTGTA-A-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAGAATTACCGTTTTACCCT
** * * *
87173337 TTATTTACAGAATTACTGGTTTACCATCAGTTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
*
87173391 TGATT
1 CGATT
87173396 GTGAAATTAC
Statistics
Matches: 292, Mismatches: 30, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
52 2 0.01
53 5 0.02
54 277 0.95
55 6 0.02
56 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (54 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
Found at i:87173057 original size:27 final size:27
Alignment explanation
Indices: 87173013--87173395 Score: 445
Period size: 27 Copynumber: 14.2 Consensus size: 27
87173003 AAAGTACTCC
87173013 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
87173040 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
87173067 CAATTTTTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
87173094 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
87173121 C-AGTTTACAAAATTACCTTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
87173148 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
87173175 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87173202 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
87173229 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
87173256 C-AGTTTACAAAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
87173283 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
87173310 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * * *
87173337 TTATTTACAGAATTACTGGTTTACCAT
1 CGATTTACAGAATTACCGTTTTACCCT
87173364 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
87173391 TGATT
1 CGATT
87173396 GTGAAATTAC
Statistics
Matches: 307, Mismatches: 41, Indels: 16
0.84 0.11 0.04
Matches are distributed among these distances:
26 4 0.01
27 299 0.97
28 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:87173104 original size:81 final size:81
Alignment explanation
Indices: 87173016--87173390 Score: 506
Period size: 81 Copynumber: 4.6 Consensus size: 81
87173006 GTACTCCCGA
* *
87173016 TTTACAGAATTACCGTTTTACCCTC-GATTTACAGAATTACCGTTTTACCCTCAATTTTTAAAAT
1 TTTACAGAATTACTGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCTCAATTTATAAAAT
*
87173080 TATCGTTTTACCCTCAG
65 TACCGTTTTACCCTCAG
* * * * *
87173097 TTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCTTTTTACCCTCAGTTTACAAAATT
1 TTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCAATTTATAAAATT
*
87173162 ATCGTTTTACCCTC-G
66 ACCGTTTTACCCTCAG
* * * *
87173177 ATTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCGATTTATAGAAT
1 -TTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCAATTTATAAAAT
87173242 TACCGTTTTACCCTCAG
65 TACCGTTTTACCCTCAG
* * * *
87173259 TTTACAAAATTACTGTTTTACCCTC-GATTTACAGAATTACTGTTTTACCCTCGATTTGTAAAAT
1 TTTACAGAATTACTGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCTCAATTTATAAAAT
*
87173323 TACCGTTTTACCCTTTA-
65 TACCGTTTTACCC-TCAG
* *
87173340 TTTACAGAATTACTGGTTTACCATCAGTTTACAGAATTACCGTTTTACCCT
1 TTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
87173391 TGATTGTGAA
Statistics
Matches: 264, Mismatches: 24, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
80 2 0.01
81 257 0.97
82 5 0.02
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
TTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCAATTTATAAAATT
ACCGTTTTACCCTCAG
Found at i:87173430 original size:27 final size:27
Alignment explanation
Indices: 87173400--87173594 Score: 196
Period size: 27 Copynumber: 7.2 Consensus size: 27
87173390 TTGATTGTGA
*
87173400 AATTACTGTAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
87173427 AATT-TTCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * * *
87173454 AATTACTTAAATACCCTTATAGGATAA
1 AATTACTGAAATACCCCTGTAGGGTAG
**
87173481 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
87173508 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
87173535 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
87173562 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
87173589 AATTAC
1 AATTAC
87173595 CATTTTGCCC
Statistics
Matches: 139, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 137 0.99
28 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:87173467 original size:54 final size:55
Alignment explanation
Indices: 87173400--87173595 Score: 229
Period size: 54 Copynumber: 3.6 Consensus size: 55
87173390 TTGATTGTGA
* * ** *
87173400 AATTACTGT-AATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTCTAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
87173454 AATTACT-TAAATACCCTTATAGGATAAAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTCTAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
87173508 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTCTAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
87173562 AATTAC-CGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTCTAAATACCCTTGTAGGGTAGAATTACC
87173596 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
53 2 0.02
54 119 0.98
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (55 bp):
AATTACTCTAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:87173503 original size:81 final size:81
Alignment explanation
Indices: 87173409--87173593 Score: 235
Period size: 81 Copynumber: 2.3 Consensus size: 81
87173399 AAATTACTGT
* * ** *
87173409 AATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTTAAATACCCTTAT
1 AATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTAT
87173474 AGGATAAAATTACCAA
66 AGGATAAAATTACCAA
* * *
87173490 AATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGT
1 AATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTAT
* * *
87173555 AGGGTAGAATTACCGA
66 AGGATAAAATTACCAA
* * * *
87173571 GATACCCTTGTGGGGTAAAATTA
1 AATACCCCTGTAGGGTAGAATTA
87173594 CCATTTTGCC
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 89 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (81 bp):
AATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTAT
AGGATAAAATTACCAA
Found at i:87173819 original size:27 final size:26
Alignment explanation
Indices: 87173776--87173858 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
87173766 CGGAGGAAAC
* *
87173776 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGATCTGCCAC-AATATCT
87173803 GTTCTGGTGGATCTGCCACAATATCT
1 GTTCTGGTGGATCTGCCACAATATCT
* *
87173829 GTATTTGGT-GACTCTGTCACAATATCT
1 GT-TCTGGTGGA-TCTGCCACAATATCT
87173856 GTT
1 GTT
87173859 GACCGATCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 12 0.24
27 38 0.76
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGATCTGCCACAATATCT
Found at i:87173978 original size:22 final size:22
Alignment explanation
Indices: 87173946--87174004 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
87173936 CCCCTTATTA
*
87173946 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
87173968 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
87173990 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
87174005 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:87174188 original size:27 final size:27
Alignment explanation
Indices: 87174166--87174239 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
87174156 TAGGTGGGTT
*
87174166 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
87174193 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
87174220 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
87174240 CAGCATGCTG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:87174391 original size:6 final size:6
Alignment explanation
Indices: 87174380--87174541 Score: 165
Period size: 6 Copynumber: 26.8 Consensus size: 6
87174370 CTGTCACGTA
* *
87174380 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
87174428 ATTCTG -TTACTG ATTCTA ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
87174477 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
87174525 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
87174542 CATTTTGGTT
Statistics
Matches: 131, Mismatches: 12, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
5 10 0.08
6 111 0.85
7 8 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:87174495 original size:85 final size:85
Alignment explanation
Indices: 87174355--87174541 Score: 338
Period size: 85 Copynumber: 2.2 Consensus size: 85
87174345 TTGCATTCAC
* *
87174355 ATTCTGATCCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
87174420 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* *
87174440 ATTCTAATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
87174505 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
87174525 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
87174542 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:87174562 original size:30 final size:30
Alignment explanation
Indices: 87174355--87174541 Score: 244
Period size: 30 Copynumber: 6.4 Consensus size: 30
87174345 TTGCATTCAC
* *
87174355 ATTCTGATCCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
87174386 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
87174416 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
87174440 ATTCTAATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
87174471 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
87174501 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
87174531 ATTCTGATTCT
1 ATTCTGATTCT
87174542 CATTTTGGTT
Statistics
Matches: 139, Mismatches: 8, Indels: 19
0.84 0.05 0.11
Matches are distributed among these distances:
24 20 0.14
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 70 0.50
31 43 0.31
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:87179636 original size:3 final size:3
Alignment explanation
Indices: 87179628--87179654 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
87179618 TACTTAAAGA
87179628 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
87179655 GATGATGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:87185511 original size:15 final size:15
Alignment explanation
Indices: 87185487--87185518 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
87185477 TAGGCATGCA
*
87185487 AAATATAAAAGACAT
1 AAATACAAAAGACAT
87185502 AAATACAAAAGACAT
1 AAATACAAAAGACAT
87185517 AA
1 AA
87185519 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:87189641 original size:22 final size:22
Alignment explanation
Indices: 87189595--87189645 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
87189585 AAATAGTTCT
*
87189595 TAAAAATCTTTTAAAAAAATTA
1 TAAAAATCTTTTAAAAAAATGA
*
87189617 TAAATAATCTTTT-AAAAAGTGA
1 TAAA-AATCTTTTAAAAAAATGA
87189639 TAAAAAT
1 TAAAAAT
87189646 TTGAATTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 3 0.12
22 15 0.58
23 8 0.31
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (22 bp):
TAAAAATCTTTTAAAAAAATGA
Found at i:87198659 original size:9 final size:9
Alignment explanation
Indices: 87198645--87198719 Score: 105
Period size: 9 Copynumber: 8.3 Consensus size: 9
87198635 TTTATACAAA
*
87198645 TAATTCTGT
1 TAATTCGGT
87198654 TAATTCGGT
1 TAATTCGGT
* *
87198663 TAATTTGGG
1 TAATTCGGT
*
87198672 TAATTCGGG
1 TAATTCGGT
87198681 TAATTCGGT
1 TAATTCGGT
*
87198690 TAATTCGAT
1 TAATTCGGT
87198699 TAATTCGGT
1 TAATTCGGT
87198708 TAATTCGGT
1 TAATTCGGT
87198717 TAA
1 TAA
87198720 CTTTATACTT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:87215591 original size:30 final size:30
Alignment explanation
Indices: 87215555--87215613 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
87215545 ATGGTATTTG
87215555 ATTGTGAATATGAATTTATATGATTAATTA
1 ATTGTGAATATGAATTTATATGATTAATTA
87215585 ATTGTGAATATGAATTTATATGATTAATT
1 ATTGTGAATATGAATTTATATGATTAATT
87215614 GGTTAATATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (30 bp):
ATTGTGAATATGAATTTATATGATTAATTA
Found at i:87235216 original size:13 final size:13
Alignment explanation
Indices: 87235198--87235222 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87235188 GGGAGAGGAC
87235198 ACGGCCGTGTGAT
1 ACGGCCGTGTGAT
87235211 ACGGCCGTGTGA
1 ACGGCCGTGTGA
87235223 AAACAGAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACGGCCGTGTGAT
Found at i:87237548 original size:19 final size:19
Alignment explanation
Indices: 87237526--87237563 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
87237516 TTTTAAAGAC
87237526 TTTAC-TTTATTTTTATTTA
1 TTTACTTTTA-TTTTATTTA
87237545 TTTACTTTTATTTTATTTA
1 TTTACTTTTATTTTATTTA
87237564 CTTTTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTACTTTTATTTTATTTA
Found at i:87237553 original size:15 final size:15
Alignment explanation
Indices: 87237526--87237587 Score: 67
Period size: 14 Copynumber: 4.2 Consensus size: 15
87237516 TTTTAAAGAC
87237526 TTTACTTTA-TTTTTA
1 TTTA-TTTACTTTTTA
87237541 TTTATTTAC-TTTTA
1 TTTATTTACTTTTTA
87237555 TTTTATTTACTTTTT-
1 -TTTATTTACTTTTTA
* *
87237570 TTAAATTACTTTTTA
1 TTTATTTACTTTTTA
87237585 TTT
1 TTT
87237588 TATTCTTAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 21 0.52
15 15 0.38
16 4 0.10
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTATTTACTTTTTA
Found at i:87250782 original size:18 final size:19
Alignment explanation
Indices: 87250747--87250783 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
87250737 TGACGTTTGG
87250747 GCACTCAATTTAGTAAAAA
1 GCACTCAATTTAGTAAAAA
87250766 GCACT-AATTT-GTAAAAA
1 GCACTCAATTTAGTAAAAA
87250783 G
1 G
87250784 TGCAAAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 5 0.28
19 5 0.28
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.27
Consensus pattern (19 bp):
GCACTCAATTTAGTAAAAA
Found at i:87251889 original size:49 final size:49
Alignment explanation
Indices: 87251828--87252002 Score: 226
Period size: 49 Copynumber: 3.5 Consensus size: 49
87251818 TGAGGTCACG
* *
87251828 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCGCA
* * * *
87251877 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATAA-TT-GATCGCA
* * *
87251928 TGCGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGATAGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCGCA
*
87251977 TGTGTAGTAATAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
87252003 TGCATACCAA
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
49 63 0.59
50 6 0.06
51 38 0.36
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCGCA
Found at i:87251996 original size:100 final size:100
Alignment explanation
Indices: 87251823--87252005 Score: 312
Period size: 100 Copynumber: 1.8 Consensus size: 100
87251813 TATTGTGAGG
* * * * * *
87251823 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGCGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGATAGCATGTGTAGTAAT
87251888 AAGTGCAGGCTACTATGCGTACTCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACTCGATAACTTCGA
87251923 TCACGTGCGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGATAGCATGTGTAGTAAT
1 TCACGTGCGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGATAGCATGTGTAGTAAT
87251988 AAGTGCAGGCTACTATGC
66 AAGTGCAGGCTACTATGC
87252006 ATACCAAATA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGCGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGATAGCATGTGTAGTAAT
AAGTGCAGGCTACTATGCGTACTCGATAACTTCGA
Found at i:87253972 original size:45 final size:45
Alignment explanation
Indices: 87253922--87254014 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
87253912 TGTTACAATG
* *
87253922 GTTGAAAGGCACTATGACACTATAT-TGAAAACGTATAAGACCATA
1 GTTGAAAGACACTATGACACTATATCAG-AAACGTATAAGACCATA
* * * *
87253967 GTTGAAAGACAGTATGGCATTGTATCAGAAACGTATAAGACCATA
1 GTTGAAAGACACTATGACACTATATCAGAAACGTATAAGACCATA
87254012 GTT
1 GTT
87254015 TAAAAACATT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 40 0.98
46 1 0.02
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (45 bp):
GTTGAAAGACACTATGACACTATATCAGAAACGTATAAGACCATA
Done.