Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 26 of 362
Found at i:7612859 original size:90 final size:90
Alignment explanation
Indices: 7612702--7612874 Score: 310
Period size: 90 Copynumber: 1.9 Consensus size: 90
7612692 AAAAACGCCG
* *
7612702 CTATAGGTCGATGTTTTAGCGGCGCTTTTGTAAAAACGCCGCTATAGGCCGATGTTTTAGCGACG
1 CTATAGGCCGATGTTTTAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGACG
7612767 CTTTTGGAAAAACGCCGCTATAGGC
66 CTTTTGGAAAAACGCCGCTATAGGC
* *
7612792 CTATAGGCCGATGTTTTAGCGGCGCTTTTGGGAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
1 CTATAGGCCGATGTTTTAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGACG
7612857 CTTTTGGAAAAACGCCGC
66 CTTTTGGAAAAACGCCGC
7612875 AAAAAAGTAA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (90 bp):
CTATAGGCCGATGTTTTAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGACG
CTTTTGGAAAAACGCCGCTATAGGC
Found at i:7613210 original size:18 final size:18
Alignment explanation
Indices: 7613181--7613231 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
7613171 TTGTCCCTTG
7613181 TTATATATATATATTAA-A
1 TTATA-ATATATATTAAGA
*
7613199 CTTCTAATATATATTAAGA
1 -TTATAATATATATTAAGA
7613218 TTATAATATATATT
1 TTATAATATATATT
7613232 TAGGGTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (18 bp):
TTATAATATATATTAAGA
Found at i:7613668 original size:15 final size:15
Alignment explanation
Indices: 7613648--7613682 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
7613638 GATTTTAATG
*
7613648 TATAAGATAAATGTA
1 TATAAGATAAATATA
7613663 TATAAGATAAATATA
1 TATAAGATAAATATA
7613678 TATAA
1 TATAA
7613683 ATTATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (15 bp):
TATAAGATAAATATA
Found at i:7617189 original size:24 final size:24
Alignment explanation
Indices: 7617162--7617229 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
7617152 ATTATTATTG
*
7617162 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
7617186 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
7617210 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
7617230 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 36 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:7617450 original size:15 final size:15
Alignment explanation
Indices: 7617406--7617461 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
7617396 AACGACATGT
7617406 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
7617422 ATCATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
7617435 ATATTATTTAATTAA
1 ATATTATTTAATTAA
7617450 ATATTATTTAAT
1 ATATTATTTAAT
7617462 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:7617586 original size:9 final size:9
Alignment explanation
Indices: 7617574--7617789 Score: 123
Period size: 9 Copynumber: 23.4 Consensus size: 9
7617564 CATAATTTAC
7617574 ATAACTTAT
1 ATAACTTAT
*
7617583 ATAACATAT
1 ATAACTTAT
*
7617592 ATAACTTAC
1 ATAACTTAT
7617601 ATAACTTAT
1 ATAACTTAT
* *
7617610 ATAACATAC
1 ATAACTTAT
7617619 ATAACTTAT
1 ATAACTTAT
*
7617628 ATAACTTAG
1 ATAACTTAT
*
7617637 ATAACTTAG
1 ATAACTTAT
*
7617646 ATAA-ATAT
1 ATAACTTAT
*
7617654 ATAACTTAC
1 ATAACTTAT
*
7617663 ATAACTTAC
1 ATAACTTAT
7617672 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
7617685 ATATTTTATAT
1 ATA-ACT-TAT
* *
7617696 CATAATTTAC
1 -ATAACTTAT
*
7617706 ATAACTTAC
1 ATAACTTAT
7617715 ATAACTTAT
1 ATAACTTAT
*
7617724 ATAACTTAG
1 ATAACTTAT
*
7617733 ATAA-ATAT
1 ATAACTTAT
* *
7617741 ATAATTTAC
1 ATAACTTAT
*
7617750 ATAA-ATAT
1 ATAACTTAT
* *
7617758 ATATCATAT
1 ATAACTTAT
* *
7617767 CATAAATTAC
1 -ATAACTTAT
*
7617777 ATAACTTAC
1 ATAACTTAT
7617786 ATAA
1 ATAA
7617790 TACTTAAATA
Statistics
Matches: 164, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
8 17 0.10
9 121 0.74
10 8 0.05
11 8 0.05
12 6 0.04
13 4 0.02
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:7617655 original size:71 final size:73
Alignment explanation
Indices: 7617564--7617789 Score: 226
Period size: 71 Copynumber: 3.1 Consensus size: 73
7617554 TATTTGATAT
* * * * * *
7617564 CATAATTTACATAACTTATATAACATATATAACTTACATAACTTATATAACATA-CATAACTTAT
1 CATAACTTAGATAACATATATAACATATATAACTTACATAACTTATATATCATATCATAAATTAC
7617628 ATAACTTA
66 ATAACTTA
* * * *
7617636 GATAACTTAGATAA-ATATATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATA
1 CATAACTTAGATAACATATATAACATATATAACTTACAT-A-ACTT--ATATA--TCATATCATA
*
7617700 ATTTACATAACTTA
60 AATTACATAACTTA
* * * * *
7617714 CATAACTTATATAACTTAGATAA-ATATATAATTTACATAA-ATATATATCATATCATAAATTAC
1 CATAACTTAGATAACATATATAACATATATAACTTACATAACTTATATATCATATCATAAATTAC
7617777 ATAACTTA
66 ATAACTTA
7617785 CATAA
1 CATAA
7617790 TACTTAAATA
Statistics
Matches: 126, Mismatches: 20, Indels: 17
0.77 0.12 0.10
Matches are distributed among these distances:
71 48 0.38
72 12 0.10
73 9 0.07
75 6 0.05
76 1 0.01
77 4 0.03
78 40 0.32
79 6 0.05
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (73 bp):
CATAACTTAGATAACATATATAACATATATAACTTACATAACTTATATATCATATCATAAATTAC
ATAACTTA
Found at i:7617777 original size:114 final size:114
Alignment explanation
Indices: 7617592--7617813 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
7617582 TATAACATAT
* * *
7617592 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTAGATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
* * *
7617657 ACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
7617706 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATA-AATAT-A
7617769 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
7617814 CATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:7623467 original size:21 final size:21
Alignment explanation
Indices: 7623434--7623484 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7623424 ACAACTTAGA
*
7623434 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
7623455 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
7623476 GCAGAGGCA
1 GCAGAGGCA
7623485 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:7623785 original size:31 final size:31
Alignment explanation
Indices: 7623739--7623805 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
7623729 TTGTTGTATT
* *
7623739 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
7623770 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
7623801 TTTTA
1 TTTTA
7623806 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:7623904 original size:43 final size:42
Alignment explanation
Indices: 7623857--7624086 Score: 293
Period size: 43 Copynumber: 5.4 Consensus size: 42
7623847 ATCTGCCAAA
* * *
7623857 TTTAGCGGCG-TTTGTAAAAAAAGCGCCGCTAAAAGCCTTGACG
1 TTTAGCGGCGCTTT-TACACAAA-CGCCGCTAAAAGCCTTGACC
*
7623900 TTTAGCGGCGC-TTTACCCACAAACGACGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTTA--CACAAACGCCGCTAAAAGCCTTGACC
* *
7623943 TTTAGCGGCGCTTTTACCACAAATGCCGCTAAAAGCCTTGACG
1 TTTAGCGGCGCTTTTA-CACAAACGCCGCTAAAAGCCTTGACC
*
7623986 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTT-ACACAAACGCCGCTAAAAGCCTTGACC
* *
7624029 TTTAGCGGCGCTTTTCCCACAAACGCCACTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTT-ACACAAACGCCGCTAAAAGCCTTGACC
*
7624072 TTTAGCGGCGTTTTT
1 TTTAGCGGCGCTTTT
7624087 TTCCAATAAA
Statistics
Matches: 170, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
42 2 0.01
43 160 0.94
44 8 0.05
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (42 bp):
TTTAGCGGCGCTTTTACACAAACGCCGCTAAAAGCCTTGACC
Found at i:7624005 original size:86 final size:86
Alignment explanation
Indices: 7623880--7624086 Score: 351
Period size: 86 Copynumber: 2.4 Consensus size: 86
7623870 GTAAAAAAAG
*
7623880 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTACCCACAAACGACGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAACGACGCTAAAAGCCTTGACCTT
7623945 TAGCGGCGCTTTTACCACAAA
66 TAGCGGCGCTTTTACCACAAA
* *
7623966 TGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAACGACGCTAAAAGCCTTGACCTT
*
7624031 TAGCGGCGCTTTTCCCACAAA
66 TAGCGGCGCTTTTACCACAAA
* * *
7624052 CGCCACTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTT
7624087 TTCCAATAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 113 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (86 bp):
CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAACGACGCTAAAAGCCTTGACCTT
TAGCGGCGCTTTTACCACAAA
Found at i:7624580 original size:20 final size:20
Alignment explanation
Indices: 7624557--7624598 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7624547 TAAAAAAATT
7624557 AAATAT-AAATAAAAATTATG
1 AAATATAAAAT-AAAATTATG
*
7624577 AAATTTAAAATAAAATTATG
1 AAATATAAAATAAAATTATG
7624597 AA
1 AA
7624599 TGTGACACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (20 bp):
AAATATAAAATAAAATTATG
Found at i:7628630 original size:12 final size:12
Alignment explanation
Indices: 7628613--7628638 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7628603 AAAATAGGGC
7628613 TTTAGCGGCGTT
1 TTTAGCGGCGTT
7628625 TTTAGCGGCGTT
1 TTTAGCGGCGTT
7628637 TT
1 TT
7628639 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:7628761 original size:41 final size:41
Alignment explanation
Indices: 7628662--7628870 Score: 284
Period size: 41 Copynumber: 5.1 Consensus size: 41
7628652 GCAAAAATTG
* * * *
7628662 TAAAACACAGAGCAATAGCGGCG-TTTT-ATCCAAAATGCCGC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTGGT--AAAACGCCGC
*
7628703 T-AAAAATAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
7628743 TAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCTGC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
7628784 T-AAAAACGGAGCATTAGCGG-GACTTTTGGTAAAACGCCGC
1 TAAAAAACAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGC
*
7628824 TAAAAATCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
7628865 TAAAAA
1 TAAAAA
7628871 TAGGATCAAT
Statistics
Matches: 151, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
39 1 0.01
40 64 0.42
41 84 0.56
42 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (41 bp):
TAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:7628797 original size:81 final size:81
Alignment explanation
Indices: 7628662--7628911 Score: 303
Period size: 81 Copynumber: 3.1 Consensus size: 81
7628652 GCAAAAATTG
* * * *
7628662 TAAAACACAGAGCAATAGCGGCG-TTTT-ATCCAAAATGCCGCTAAAAATA-GAGCATTAGCGGC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTGGT--AAAACGCCGCTAAAAA-AGGAGCATTAGCGGC
7628724 GCTTTTGGTAAAACGCCGC
63 GCTTTTGGTAAAACGCCGC
* *
7628743 TAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCTGCTAAAAACGGAGCATTAGCGG-GAC
1 TAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAAGGAGCATTAGCGGCG-C
7628807 TTTTGGTAAAACGCCGC
65 TTTTGGTAAAACGCCGC
* * * *
7628824 TAAAAATCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAGGATCAATAGTGGCG-
1 TAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA-AGGAGCATTAGCGGCGC
*
7628888 TTTGTGGTCAAAACGCCAC
65 TTT-TGGT-AAAACGCCGC
7628907 TAAAA
1 TAAAA
7628912 GTCTCACATA
Statistics
Matches: 148, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
80 1 0.01
81 113 0.76
82 18 0.12
83 16 0.11
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (81 bp):
TAAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAAGGAGCATTAGCGGCGCT
TTTGGTAAAACGCCGC
Found at i:7628871 original size:41 final size:41
Alignment explanation
Indices: 7628693--7628911 Score: 295
Period size: 41 Copynumber: 5.4 Consensus size: 41
7628683 CGTTTTATCC
*
7628693 AAAATGCCGCTAAAAAT-AGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATCAGAGCATTAGCGGCGCTTTTGGT
*
7628733 AAAACGCCGCTAAAAAACAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATCAGAGCATTAGCGGCGCTTTTGGT
* *
7628774 AAAACGCTGCTAAAAA-CGGAGCATTAGCGG-GACTTTTGGT
1 AAAACGCCGCTAAAAATCAGAGCATTAGCGGCG-CTTTTGGT
7628814 AAAACGCCGCTAAAAATCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATCAGAGCATTAGCGGCGCTTTTGGT
* * *
7628855 AAAACGCCGCTAAAAAT-AGGATCAATAGTGGCG-TTTGTGGT
1 AAAACGCCGCTAAAAATCA-GAGCATTAGCGGCGCTTT-TGGT
*
7628896 CAAAACGCCACTAAAA
1 -AAAACGCCGCTAAAA
7628912 GTCTCACATA
Statistics
Matches: 162, Mismatches: 10, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
39 1 0.01
40 55 0.34
41 91 0.56
42 15 0.09
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (41 bp):
AAAACGCCGCTAAAAATCAGAGCATTAGCGGCGCTTTTGGT
Found at i:7629023 original size:37 final size:37
Alignment explanation
Indices: 7628951--7629024 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
7628941 CTCAAAAAAT
* *
7628951 CATAAACACTAATCTATAACCCCTAAAACAGTAAACC
1 CATAAACACTAAACTATAACCCCTAAAACACTAAACC
* *
7628988 CATAAACACTAAACTATTACCCCTAAAACCCTAAACC
1 CATAAACACTAAACTATAACCCCTAAAACACTAAACC
7629025 AGTTTATGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.47, C:0.32, G:0.01, T:0.19
Consensus pattern (37 bp):
CATAAACACTAAACTATAACCCCTAAAACACTAAACC
Found at i:7629676 original size:17 final size:16
Alignment explanation
Indices: 7629650--7629719 Score: 61
Period size: 16 Copynumber: 4.2 Consensus size: 16
7629640 AATCTATATA
7629650 TTAAATAATTTCAAATT
1 TTAAA-AATTTCAAATT
*
7629667 TTAAAGAA-TTAAAATT
1 TTAAA-AATTTCAAATT
*
7629683 TTAAAAAATTTTCAAGTT
1 TT-AAAAA-TTTCAAATT
* *
7629701 TTCAAATTTTCAAATT
1 TTAAAAATTTCAAATT
7629717 TTA
1 TTA
7629720 TGTAATTCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
16 21 0.50
17 13 0.31
18 8 0.19
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (16 bp):
TTAAAAATTTCAAATT
Found at i:7629866 original size:18 final size:17
Alignment explanation
Indices: 7629829--7629863 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
7629819 TATATAAGTG
7629829 ATTGTTTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
7629846 ATTG-TTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
7629862 AT
1 AT
7629864 ATTAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
ATTGTTTTTTAATTTAT
Found at i:7630182 original size:114 final size:116
Alignment explanation
Indices: 7630007--7630305 Score: 455
Period size: 115 Copynumber: 2.6 Consensus size: 116
7629997 ATTGGATTTG
* * *
7630007 TTAGTGGCGTTTT-GCGCAAAACGCCGTAATAGGTGCGTTTTTAGCGGCGCTAGGCTATAAACGC
1 TTAGTGGCGTTTTGGGGCTAAACGCCGCAATAGGTGCGTTTTTAGCGGCGCTAGGCTATAAACGC
* * *
7630071 CGCTAAAGGTGATTTCGGTTAAAACAAAAACGATGTCGTTTTGTTATA-TA
66 CGCTAAAGGTGATTTCGGTTAAAACAAAAACGACGTCATTTTATTATATTA
*
7630121 TTAGTGGCATTTTGGGGCTAAACGCCGCAATAGGTGCG-TTTTAGCGGCGCTAAGG-TATAAACG
1 TTAGTGGCGTTTTGGGGCTAAACGCCGCAATAGGTGCGTTTTTAGCGGCGCT-AGGCTATAAACG
*
7630184 CCGCTAAAGGTGATTTCGGTTAAAACAAAAACGGCGTCATTTTATTATATTA
65 CCGCTAAAGGTGATTTCGGTTAAAACAAAAACGACGTCATTTTATTATATTA
* * *
7630236 TTAGTGGCGTTTTGAGGCTAAACGCCACAATAGGTG-GTTTTTAGCGGCGCTAGGTTATAAACGC
1 TTAGTGGCGTTTTGGGGCTAAACGCCGCAATAGGTGCGTTTTTAGCGGCGCTAGGCTATAAACGC
7630300 CGCTAA
66 CGCTAA
7630306 TGTTAAATTA
Statistics
Matches: 169, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
114 82 0.49
115 87 0.51
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (116 bp):
TTAGTGGCGTTTTGGGGCTAAACGCCGCAATAGGTGCGTTTTTAGCGGCGCTAGGCTATAAACGC
CGCTAAAGGTGATTTCGGTTAAAACAAAAACGACGTCATTTTATTATATTA
Found at i:7631830 original size:22 final size:22
Alignment explanation
Indices: 7631805--7631850 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
7631795 TTCTTTAAGA
7631805 TTTTATTATGGTTGACATTTTT
1 TTTTATTATGGTTGACATTTTT
*
7631827 TTTTATTTTGGTTGACATTTTT
1 TTTTATTATGGTTGACATTTTT
7631849 TT
1 TT
7631851 ATTTTTGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.04, G:0.13, T:0.67
Consensus pattern (22 bp):
TTTTATTATGGTTGACATTTTT
Found at i:7633392 original size:43 final size:43
Alignment explanation
Indices: 7633331--7633559 Score: 305
Period size: 43 Copynumber: 5.0 Consensus size: 43
7633321 ATCTTAATGT
* *
7633331 TAAATATATATCATATAATAATTTACAAAACTAACATAATACA
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
*
7633374 TAAATATATATCATATAATAACTTGCAAAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
7633417 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
1 TAAATATATATC-----AT-A--TA-ATAACTTACAAAACTTACATAATACA
*
7633469 TAAATATATATCATATAATAACTTACAAGACTTACATAATACA
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
*
7633512 TAAATAATATATATCATACAATAACTTACAAAACTTACATAATACA
1 T--A-AATATATATCATATAATAACTTACAAAACTTACATAATACA
7633558 TA
1 TA
7633560 CCTTATATAA
Statistics
Matches: 167, Mismatches: 7, Indels: 23
0.85 0.04 0.12
Matches are distributed among these distances:
43 78 0.47
44 3 0.02
45 1 0.01
46 41 0.25
47 2 0.01
48 2 0.01
49 1 0.01
51 2 0.01
52 37 0.22
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (43 bp):
TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
Found at i:7633446 original size:9 final size:9
Alignment explanation
Indices: 7633434--7633619 Score: 68
Period size: 9 Copynumber: 21.0 Consensus size: 9
7633424 ATATCATATA
7633434 ATAACTTAC
1 ATAACTTAC
7633443 ATAACTTAC
1 ATAACTTAC
*
7633452 AAAACTTAC
1 ATAACTTAC
7633461 ATAA--TAC
1 ATAACTTAC
* *
7633468 ATAA-ATAT
1 ATAACTTAC
*
7633476 ATATCATATA-
1 ATAAC-T-TAC
7633486 ATAACTTAC
1 ATAACTTAC
7633495 A-AGACTTAC
1 ATA-ACTTAC
7633504 ATAA--TAC
1 ATAACTTAC
* *
7633511 ATAAATAATAT
1 ATAACT--TAC
* *
7633522 ATATCATAC
1 ATAACTTAC
7633531 AATAACTTAC
1 -ATAACTTAC
*
7633541 AAAACTTAC
1 ATAACTTAC
7633550 ATAA--TAC
1 ATAACTTAC
* *
7633557 ATACCTTAT
1 ATAACTTAC
* *
7633566 ATAAATT-T
1 ATAACTTAC
* *
7633574 ATATCATATC
1 ATAACTTA-C
*
7633584 ATAACTTGC
1 ATAACTTAC
*
7633593 ATAACATAC
1 ATAACTTAC
*
7633602 AAAACTTAC
1 ATAACTTAC
*
7633611 TTAACTTAC
1 ATAACTTAC
7633620 GTAATATATA
Statistics
Matches: 129, Mismatches: 32, Indels: 32
0.67 0.17 0.17
Matches are distributed among these distances:
7 20 0.16
8 13 0.10
9 72 0.56
10 17 0.13
11 7 0.05
ACGTcount: A:0.49, C:0.17, G:0.01, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:7633447 original size:52 final size:52
Alignment explanation
Indices: 7633391--7633610 Score: 251
Period size: 52 Copynumber: 4.3 Consensus size: 52
7633381 ATATCATATA
*
7633391 ATAACTTGCAAAACTTACATAATACATAAATATATATCATATAATAACTTAC
1 ATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTTAC
7633443 ATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTTAC
1 ATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTTAC
* *
7633495 A-AGACTTACATAA--TACAT-A-A-AT-AATATATATCATACAATAACTTAC
1 ATA-ACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTTAC
* * * * * * *
7633541 AAAACTTACATAA--TACATACCTTATATAAATTTATATCATATCATAACTTGC
1 ATAACTTACAAAACTTACATA--ATACATAAATATATATCATATAATAACTTAC
*
7633593 ATAACATACAAAACTTAC
1 ATAACTTACAAAACTTAC
7633611 TTAACTTACG
Statistics
Matches: 147, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
46 39 0.27
47 3 0.02
48 1 0.01
49 1 0.01
50 6 0.04
51 3 0.02
52 91 0.62
54 3 0.02
ACGTcount: A:0.50, C:0.16, G:0.01, T:0.32
Consensus pattern (52 bp):
ATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTTAC
Found at i:7633463 original size:95 final size:89
Alignment explanation
Indices: 7633333--7633559 Score: 337
Period size: 95 Copynumber: 2.5 Consensus size: 89
7633323 CTTAATGTTA
* * * *
7633333 AATATATATCATATAATAATTTACAAAACTAACATAATACATAAATATATATCATATAATAACTT
1 AATATATATAATACAATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTT
*
7633398 GCAAAACTTACATAATACATAAAT
66 ACAAAACTTACATAATACATAAAT
7633422 ATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATATAA
1 A-ATAT-ATATAAT-AC--A-ATAACTTACAAAACTTACATAATACATAAATATATATCATATAA
*
7633487 TAACTTACAAGACTTACATAATACATAAAT
60 TAACTTACAAAACTTACATAATACATAAAT
*
7633517 AATATATATCATACAATAACTTACAAAACTTACATAATACATA
1 AATATATATAATACAATAACTTACAAAACTTACATAATACATA
7633560 CCTTATATAA
Statistics
Matches: 125, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
89 29 0.23
90 5 0.04
91 6 0.05
92 3 0.02
93 6 0.05
94 5 0.04
95 71 0.57
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (89 bp):
AATATATATAATACAATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTT
ACAAAACTTACATAATACATAAAT
Found at i:7633568 original size:46 final size:44
Alignment explanation
Indices: 7633443--7633559 Score: 191
Period size: 46 Copynumber: 2.6 Consensus size: 44
7633433 AATAACTTAC
*
7633443 ATAACTTACAAAACTTACATAATACATA-AATATATATCATATA
1 ATAACTTACAAAACTTACATAATACATATAATATATATCATACA
*
7633486 ATAACTTACAAGACTTACATAATACATAAATAATATATATCATACA
1 ATAACTTACAAAACTTACATAATACAT--ATAATATATATCATACA
7633532 ATAACTTACAAAACTTACATAATACATA
1 ATAACTTACAAAACTTACATAATACATA
7633560 CCTTATATAA
Statistics
Matches: 68, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
43 26 0.38
44 1 0.01
45 1 0.01
46 40 0.59
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.31
Consensus pattern (44 bp):
ATAACTTACAAAACTTACATAATACATATAATATATATCATACA
Found at i:7633588 original size:98 final size:94
Alignment explanation
Indices: 7633353--7633590 Score: 325
Period size: 95 Copynumber: 2.5 Consensus size: 94
7633343 ATATAATAAT
*
7633353 TTACAAAACTAACATAATACATAAATATATATCATATAATAACTTGCAAAACTTACATAATACAT
1 TTACAAAACT-ACATAATACATAAATATATATCATATAATAACTTACAAAACTTACATAATACAT
* *
7633418 AAATATATATCATATAATAACTTACATAAC
65 AAATATATATCATACAATAACTTACAAAAC
*
7633448 TTACAAAACTTACATAATACATAAATATATATCATATAATAACTTACAAGACTTACATAATACAT
1 TTACAAAAC-TACATAATACATAAATATATATCATATAATAACTTACAAAACTTACATAATACAT
7633513 AAATAATATATATCATACAATAACTTACAAAAC
65 --A-AATATATATCATACAATAACTTACAAAAC
* * * * *
7633546 TTACATAA-TACATACCTTATATAAATTTATATCATATCATAACTT
1 TTACAAAACTACATA--ATACATAAATATATATCATATAATAACTT
7633591 GCATAACATA
Statistics
Matches: 128, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
95 61 0.48
96 7 0.05
97 1 0.01
98 59 0.46
ACGTcount: A:0.51, C:0.15, G:0.01, T:0.33
Consensus pattern (94 bp):
TTACAAAACTACATAATACATAAATATATATCATATAATAACTTACAAAACTTACATAATACATA
AATATATATCATACAATAACTTACAAAAC
Found at i:7639160 original size:21 final size:21
Alignment explanation
Indices: 7639127--7639177 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7639117 ACAACTTAGA
*
7639127 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
7639148 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
7639169 GCAGAGGCA
1 GCAGAGGCA
7639178 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:7639487 original size:31 final size:31
Alignment explanation
Indices: 7639420--7639497 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
7639410 AATTAATGTT
* * *
7639420 TTTGGTTGTATTTTTATGCTAAATTTGCTGTT
1 TTTGGTTGTA-TTTTATACTAAATTTACTGTA
* * *
7639452 TTTGGCTGTATTTTATACTATATTTATTGTA
1 TTTGGTTGTATTTTATACTAAATTTACTGTA
*
7639483 TTTGGTTGGATTTTA
1 TTTGGTTGTATTTTA
7639498 ATGCAGGAAG
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
31 29 0.76
32 9 0.24
ACGTcount: A:0.18, C:0.05, G:0.18, T:0.59
Consensus pattern (31 bp):
TTTGGTTGTATTTTATACTAAATTTACTGTA
Found at i:7640859 original size:20 final size:20
Alignment explanation
Indices: 7640818--7640861 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7640808 ACATGTTGAT
* *
7640818 AAATAATTTAAAAATTATAA
1 AAATAATTTAAAAATAAAAA
7640838 AAAT-ATTTATAAAATAAAAA
1 AAATAATTTA-AAAATAAAAA
7640858 AAAT
1 AAAT
7640862 CAAAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATAATTTAAAAATAAAAA
Found at i:7641123 original size:3 final size:3
Alignment explanation
Indices: 7641115--7641144 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7641105 AGGGCTAAAT
*
7641115 TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7641145 AATAACTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7643635 original size:15 final size:15
Alignment explanation
Indices: 7643615--7643666 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
7643605 GCTACAAAAC
7643615 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
7643630 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
7643649 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
7643664 ATT
1 ATT
7643667 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:7643786 original size:22 final size:23
Alignment explanation
Indices: 7643760--7643825 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
7643750 TATTAAATAG
7643760 TTTATTAAAATAATAATTTA-TA
1 TTTATTAAAATAATAATTTATTA
* *
7643782 TTTATTATATTAATAATTTATTA
1 TTTATTAAAATAATAATTTATTA
*
7643805 TATGATTAAATATAAATAATT
1 T-TTATTAAA-AT-AATAATT
7643826 AAATATCTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 18 0.51
23 3 0.09
24 6 0.17
25 1 0.03
26 7 0.20
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TTTATTAAAATAATAATTTATTA
Found at i:7650059 original size:41 final size:41
Alignment explanation
Indices: 7650002--7650089 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
7649992 TCAAATACAT
7650002 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAAATATA
* * * * *
7650043 TTAAAACAATTCTTAAAACAATACACAAATTAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAAATATA
*
7650084 ATAAAA
1 TTAAAA
7650090 ATTGATTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.67, C:0.09, G:0.01, T:0.23
Consensus pattern (41 bp):
TTAAAACAAATATTAAAACAAGAAACAAATAAAAAAATATA
Found at i:7650437 original size:17 final size:17
Alignment explanation
Indices: 7650398--7650430 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7650388 TTTTACTACA
*
7650398 ATTT-TTGTTTTTATTT
1 ATTTATTGTTTCTATTT
7650414 ATTTATTGTTTCTATTT
1 ATTTATTGTTTCTATTT
7650431 TTATATTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (17 bp):
ATTTATTGTTTCTATTT
Found at i:7651510 original size:18 final size:18
Alignment explanation
Indices: 7651487--7651522 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7651477 ATGCATTGAA
7651487 CTTTACCTACTAAAAAGG
1 CTTTACCTACTAAAAAGG
7651505 CTTTACCTACTAAAAAGG
1 CTTTACCTACTAAAAAGG
7651523 ATTGACTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (18 bp):
CTTTACCTACTAAAAAGG
Found at i:7656095 original size:20 final size:19
Alignment explanation
Indices: 7656063--7656109 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
7656053 AAGTACGAAT
*
7656063 TTAAATATTAATG-CCTAAA
1 TTAAAAATTAATGACC-AAA
7656082 TTAAAAATTAAATGACCAAA
1 TTAAAAATT-AATGACCAAA
*
7656102 ATAAAAAT
1 TTAAAAAT
7656110 GTGAACATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.33
20 14 0.58
21 2 0.08
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (19 bp):
TTAAAAATTAATGACCAAA
Found at i:7661152 original size:46 final size:46
Alignment explanation
Indices: 7661102--7661323 Score: 257
Period size: 46 Copynumber: 4.8 Consensus size: 46
7661092 GATAGAAAAT
*
7661102 GTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAC
*
7661148 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAC
* * *** *
7661194 GTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACGGGGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-TATGAAAC
** * * *
7661241 GAATAAGACCATGGTTGAATGATACCATGGCAACATGACA-GAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAAC
* * * * *
7661287 GAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
7661324 TCGAAGATAA
Statistics
Matches: 154, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
45 1 0.01
46 116 0.75
47 37 0.24
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAC
Found at i:7661293 original size:93 final size:92
Alignment explanation
Indices: 7661095--7661318 Score: 279
Period size: 93 Copynumber: 2.4 Consensus size: 92
7661085 GCTCCCTGAT
* * * **
7661095 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGATATGAAACGTGTAAGACCAT
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAGAGGAAACGAATAAGACCAT
* *
7661160 GGTTGAAAGATACCATGGCAACCTGAT
66 GGTTGAAAGATACCATGGCAACATGAC
* * * *
7661187 ATG-AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACGGGGAAATGAATAAGACC
1 A-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGA-GAGGAAACGAATAAGACC
*
7661251 ATGGTTGAATGATACCATGGCAACATGAC
64 ATGGTTGAAAGATACCATGGCAACATGAC
* * * *
7661280 AGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
7661319 TCATGTCGAA
Statistics
Matches: 112, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
92 41 0.37
93 71 0.63
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (92 bp):
AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAGAGGAAACGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATGAC
Found at i:7668948 original size:22 final size:19
Alignment explanation
Indices: 7668912--7668952 Score: 55
Period size: 22 Copynumber: 2.0 Consensus size: 19
7668902 TTACTAAAAC
7668912 ATAATATTAATTAATTTAA
1 ATAATATTAATTAATTTAA
7668931 ATAATATTTAAATATAATTTAA
1 ATAATA-TT-AAT-TAATTTAA
7668953 TAAAATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 2 0.11
21 3 0.16
22 8 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATAATATTAATTAATTTAA
Found at i:7668984 original size:13 final size:15
Alignment explanation
Indices: 7668966--7668998 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
7668956 AATAAATATT
7668966 ATATTTTTTA-AA-A
1 ATATTTTTTATAATA
7668979 ATATTTTTTATAATA
1 ATATTTTTTATAATA
7668994 ATATT
1 ATATT
7668999 AAATACTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 2 0.11
15 6 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATTTTTTATAATA
Found at i:7676963 original size:20 final size:21
Alignment explanation
Indices: 7676924--7676964 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7676914 ACTTGTATAA
*
7676924 CTATCATCAAATATTCAAAAT
1 CTATCATCAAACATTCAAAAT
*
7676945 CTATCATTAAACA-TCAAAAT
1 CTATCATCAAACATTCAAAAT
7676965 ACTCATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (21 bp):
CTATCATCAAACATTCAAAAT
Found at i:7680743 original size:35 final size:35
Alignment explanation
Indices: 7680704--7680885 Score: 183
Period size: 35 Copynumber: 5.2 Consensus size: 35
7680694 CATGGAAAAA
* *
7680704 TTATGACACGTAGGTATGGTATTGTCCATACTGAG
1 TTATGAAACGTAGGTATGGTATTATCCATACTGAG
* *
7680739 TTATGACACGTAGGTATGGTATTATCCATAC-CAGG
1 TTATGAAACGTAGGTATGGTATTATCCATACTGA-G
*
7680774 CTAT-AATACGTAGGTATGGTATT-TCCCATA-TCGAG
1 TTATGAA-ACGTAGGTATGGTATTAT-CCATACT-GAG
* * *
7680809 TTATGAAACGTAGGTATGGTATTGTCTATATTGAG
1 TTATGAAACGTAGGTATGGTATTATCCATACTGAG
* * * *
7680844 CTATGAAACATAGGTATGGTATTAACTATACTGAG
1 TTATGAAACGTAGGTATGGTATTATCCATACTGAG
*
7680879 TTGTGAA
1 TTATGAA
7680886 TCATGGCACT
Statistics
Matches: 125, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
34 3 0.02
35 117 0.94
36 5 0.04
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.35
Consensus pattern (35 bp):
TTATGAAACGTAGGTATGGTATTATCCATACTGAG
Found at i:7682392 original size:30 final size:31
Alignment explanation
Indices: 7682368--7682426 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
7682358 GTAAATACTT
* **
7682368 AAAATTTGAAGGGTTAA-AGTGTAAATATGA
1 AAAAGTTGAAGGACTAATAGTGTAAATATGA
7682398 AAAAGTTGAAGGACTAATAGTGTAAATAT
1 AAAAGTTGAAGGACTAATAGTGTAAATAT
7682427 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.29
Consensus pattern (31 bp):
AAAAGTTGAAGGACTAATAGTGTAAATATGA
Found at i:7682702 original size:12 final size:12
Alignment explanation
Indices: 7682674--7682715 Score: 61
Period size: 11 Copynumber: 3.7 Consensus size: 12
7682664 TTTATTAATA
7682674 TTTTAATTTGA-
1 TTTTAATTTGAT
7682685 TTTTAATTTGAT
1 TTTTAATTTGAT
7682697 TTTTAA-TTGAT
1 TTTTAATTTGAT
*
7682708 ATTTAATT
1 TTTTAATT
7682716 ATTTAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 21 0.75
12 7 0.25
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (12 bp):
TTTTAATTTGAT
Found at i:7684563 original size:45 final size:45
Alignment explanation
Indices: 7684463--7684587 Score: 144
Period size: 45 Copynumber: 2.8 Consensus size: 45
7684453 ATCATACCAG
*
7684463 AAATGAGTAAGACCATAGCTGAAAGACGCTCTGGCATCACCATTC
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACCATTC
* * ** *
7684508 AGACGAGTAAGACCATAGCTGAAAGACGCTATGGCATTGCGATTC
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACCATTC
* * * **
7684553 AAATGTGTAAGACTATA-TTGAAAGAAACTATGGCA
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCA
7684588 ATCTGACGAG
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 15 0.22
45 52 0.78
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACCATTC
Found at i:7684690 original size:43 final size:46
Alignment explanation
Indices: 7684570--7684773 Score: 249
Period size: 46 Copynumber: 4.5 Consensus size: 46
7684560 TAAGACTATA
* * *
7684570 TTGAAAGAAACTATGGCAATC-TGACGAGAAATGAATAAGACCATGG
1 TTGAAAGATACCATGGCAA-CATGACAAGAAATGAATAAGACCATGG
7684616 TTGAAAGATACCATGGCAACATGA-AAGGAAATGAATAAGACCATGG
1 TTGAAAGATACCATGGCAACATGACAA-GAAATGAATAAGACCATGG
* *
7684662 TTG-AA-A-ACCATGGAAACGTGACAAGAAATGAATAAGACCATGG
1 TTGAAAGATACCATGGCAACATGACAAGAAATGAATAAGACCATGG
* *
7684705 TTGAAAGATACCATGGCAACATGAC-AGAAAATGAGTAAGACCATAG
1 TTGAAAGATACCATGGCAACATGACAAG-AAATGAATAAGACCATGG
* * *
7684751 TTGAAAGACACTATGGCATCATG
1 TTGAAAGATACCATGGCAACATG
7684774 TCGAAGATAA
Statistics
Matches: 139, Mismatches: 12, Indels: 14
0.84 0.07 0.08
Matches are distributed among these distances:
43 35 0.25
44 5 0.04
45 7 0.05
46 92 0.66
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (46 bp):
TTGAAAGATACCATGGCAACATGACAAGAAATGAATAAGACCATGG
Found at i:7684703 original size:89 final size:89
Alignment explanation
Indices: 7684591--7684756 Score: 287
Period size: 89 Copynumber: 1.9 Consensus size: 89
7684581 TATGGCAATC
* *
7684591 TGACGAGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAAAGGAAATGAATAAGA
1 TGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAAAGAAAATGAATAAGA
*
7684656 CCATGGTTGAAAACCATGGAAACG
66 CCATAGTTGAAAACCATGGAAACG
* *
7684680 TGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGA
1 TGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAAAGAAAATGAATAAGA
7684745 CCATAGTTGAAA
66 CCATAGTTGAAA
7684757 GACACTATGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 72 1.00
ACGTcount: A:0.46, C:0.13, G:0.23, T:0.17
Consensus pattern (89 bp):
TGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAAAGAAAATGAATAAGA
CCATAGTTGAAAACCATGGAAACG
Found at i:7685417 original size:26 final size:26
Alignment explanation
Indices: 7685383--7685435 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
7685373 CTAAACTTTT
7685383 AGAGTTAGTTTATACTGATCTAGCAG
1 AGAGTTAGTTTATACTGATCTAGCAG
7685409 AGAGTTAGTTTATACTGATCTAGCAG
1 AGAGTTAGTTTATACTGATCTAGCAG
7685435 A
1 A
7685436 CTTTAGAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (26 bp):
AGAGTTAGTTTATACTGATCTAGCAG
Found at i:7688092 original size:87 final size:86
Alignment explanation
Indices: 7687939--7688101 Score: 263
Period size: 87 Copynumber: 1.9 Consensus size: 86
7687929 TGTATAATGA
* *
7687939 TGAGTTTTTACTCTTAATGAATTCATAGCCCAAATTTTGGGTGGTCTTATTGAGACGGACTTGAT
1 TGAGTTTTTACTCTTAATGAATTCATAGCCCAAATTTTGGGTGGTCCTATTGAGACGAACTTGAT
7688004 GAATTCACCGATTTGAGAGGT
66 GAATTCACCGATTTGAGAGGT
* * **
7688025 TGAGTTTATTACTCTTAATGAGTTCATATCCCAGCTTTTGGGTGGTCCTATTGAGACGAACTTGA
1 TGAGTTT-TTACTCTTAATGAATTCATAGCCCAAATTTTGGGTGGTCCTATTGAGACGAACTTGA
7688090 TGAATTCACCGA
65 TGAATTCACCGA
7688102 CTTAAATTTG
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 7 0.10
87 63 0.90
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (86 bp):
TGAGTTTTTACTCTTAATGAATTCATAGCCCAAATTTTGGGTGGTCCTATTGAGACGAACTTGAT
GAATTCACCGATTTGAGAGGT
Found at i:7696572 original size:12 final size:12
Alignment explanation
Indices: 7696553--7696596 Score: 81
Period size: 12 Copynumber: 3.8 Consensus size: 12
7696543 CTAAGTTCGA
7696553 TTCT-AATGGTT
1 TTCTGAATGGTT
7696564 TTCTGAATGGTT
1 TTCTGAATGGTT
7696576 TTCTGAATGGTT
1 TTCTGAATGGTT
7696588 TTCTGAATG
1 TTCTGAATG
7696597 TTACTGTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 4 0.12
12 28 0.88
ACGTcount: A:0.18, C:0.09, G:0.23, T:0.50
Consensus pattern (12 bp):
TTCTGAATGGTT
Found at i:7696962 original size:19 final size:19
Alignment explanation
Indices: 7696934--7696970 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7696924 TCAATAATGT
*
7696934 TAAATTTAATTTTTTATTA
1 TAAATATAATTTTTTATTA
7696953 TAAATATAATTTTTTATT
1 TAAATATAATTTTTTATT
7696971 GTTTAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TAAATATAATTTTTTATTA
Found at i:7700612 original size:6 final size:6
Alignment explanation
Indices: 7700593--7700668 Score: 75
Period size: 6 Copynumber: 12.7 Consensus size: 6
7700583 ACAAAATGTC
*
7700593 ATAAAA AGT-AAA ATAGAA ATAAAA ATAAAA AT-AAA ATAAAA GATAAAA
1 ATAAAA A-TAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA -ATAAAA
* * * *
7700641 GTAAAG ATAAAC ATAAAC ATAAAA ATAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAA
7700669 TCGGACTCAA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
5 6 0.10
6 46 0.78
7 7 0.12
ACGTcount: A:0.74, C:0.03, G:0.07, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:7702719 original size:68 final size:67
Alignment explanation
Indices: 7702647--7702796 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
7702637 CATCATGTGT
* * * *
7702647 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
7702709 ATGTAG
62 ATGTAG
** * *
7702715 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
7702780 AG
66 AG
7702782 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
7702797 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:7702752 original size:64 final size:64
Alignment explanation
Indices: 7702671--7702854 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
7702661 AGACATTATG
* *
7702671 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
7702735 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
7702800 AA
63 AA
* * * *
7702802 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
7702855 CAAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:7710715 original size:18 final size:17
Alignment explanation
Indices: 7710682--7710720 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7710672 TTGTATAAAT
7710682 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
7710700 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
7710717 TGTG
1 TGTG
7710721 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:7710973 original size:23 final size:23
Alignment explanation
Indices: 7710946--7711021 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
7710936 AGTGTTATTG
7710946 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7710969 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7710992 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7711015 ATCAGTG
1 ATCAGTG
7711022 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7718051 original size:18 final size:17
Alignment explanation
Indices: 7718018--7718056 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7718008 TTGTATAAAT
7718018 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
7718036 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
7718053 TGTG
1 TGTG
7718057 GAGGAAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:7718307 original size:23 final size:23
Alignment explanation
Indices: 7718280--7718355 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
7718270 AGTGTTATTG
7718280 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7718303 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7718326 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7718349 ATCAGTG
1 ATCAGTG
7718356 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7729529 original size:23 final size:23
Alignment explanation
Indices: 7729503--7729547 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7729493 TAAAATACCC
*
7729503 AAAACCAAAACCTTGACCCTAAT
1 AAAACCAAAACCTTAACCCTAAT
**
7729526 AAAATTAAAACCTTAACCCTAA
1 AAAACCAAAACCTTAACCCTAA
7729548 GAAGGAGAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.51, C:0.27, G:0.02, T:0.20
Consensus pattern (23 bp):
AAAACCAAAACCTTAACCCTAAT
Found at i:7733703 original size:15 final size:15
Alignment explanation
Indices: 7733683--7733712 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7733673 CATTTTATTT
*
7733683 ATATTAGGATAATTA
1 ATATTAAGATAATTA
7733698 ATATTAAGATAATTA
1 ATATTAAGATAATTA
7733713 TTAAGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:7741686 original size:78 final size:78
Alignment explanation
Indices: 7741557--7741711 Score: 283
Period size: 78 Copynumber: 2.0 Consensus size: 78
7741547 TCTACTTCAA
*
7741557 AGGCTGAATATAGAAGCCTAGCTAATGTGACATTCGAGTTAATGTGGTTTCATTCTTTGTTGACT
1 AGGCTGAATATAGAAGCCTAGCTAATGTGACATTCGAGTTAACGTGGTTTCATTCTTTGTTGACT
7741622 GAGATAGGGATAG
66 GAGATAGGGATAG
**
7741635 AGGCTGAATATAGAAGTTTAGCTAATGTGACATTCGAGTTAACGTGGTTTCATTCTTTGTTGACT
1 AGGCTGAATATAGAAGCCTAGCTAATGTGACATTCGAGTTAACGTGGTTTCATTCTTTGTTGACT
7741700 GAGATAGGGATA
66 GAGATAGGGATA
7741712 AAGCTTCGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.34
Consensus pattern (78 bp):
AGGCTGAATATAGAAGCCTAGCTAATGTGACATTCGAGTTAACGTGGTTTCATTCTTTGTTGACT
GAGATAGGGATAG
Found at i:7742221 original size:35 final size:35
Alignment explanation
Indices: 7742175--7742244 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
7742165 ATGTGTATGT
7742175 ATATACCTGAATAAATACCAGTATTTTCCACAGGC
1 ATATACCTGAATAAATACCAGTATTTTCCACAGGC
7742210 ATATACCTGAATAAATACCAGTATTTTCCACAGGC
1 ATATACCTGAATAAATACCAGTATTTTCCACAGGC
7742245 TGTAACCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (35 bp):
ATATACCTGAATAAATACCAGTATTTTCCACAGGC
Found at i:7754021 original size:33 final size:33
Alignment explanation
Indices: 7753944--7754009 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
7753934 ATAAACTTGA
* * *
7753944 GCCGAGAGGAGTAGAATATGGCGGTGGATATGG
1 GCCGGGAGGAGTAGAATACGACGGTGGATATGG
*
7753977 GCCGGGAGGAGTAGAGTACGACGGTGGATATGG
1 GCCGGGAGGAGTAGAATACGACGGTGGATATGG
7754010 CTTTGGAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.26, C:0.11, G:0.47, T:0.17
Consensus pattern (33 bp):
GCCGGGAGGAGTAGAATACGACGGTGGATATGG
Found at i:7754233 original size:12 final size:12
Alignment explanation
Indices: 7754216--7754246 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7754206 TGTAGTTCCG
*
7754216 GCTCTGGCTCCT
1 GCTCTGGCTCCC
7754228 GCTCTGGCTCCC
1 GCTCTGGCTCCC
7754240 GCTCTGG
1 GCTCTGG
7754247 TGCATGATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.42, G:0.29, T:0.29
Consensus pattern (12 bp):
GCTCTGGCTCCC
Found at i:7756092 original size:22 final size:22
Alignment explanation
Indices: 7756058--7756118 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 22
7756048 TCAACATTTT
*
7756058 AATAAATCA-ATAAAAAATATCA
1 AATAAAT-ATATAAAAAATATAA
*
7756080 AATAAATATAT-AATAATATAA
1 AATAAATATATAAAAAATATAA
*
7756101 AATTACATTATATAAAAA
1 AA-TA-AATATATAAAAA
7756119 TTACATTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
21 11 0.35
22 11 0.35
23 6 0.19
24 3 0.10
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (22 bp):
AATAAATATATAAAAAATATAA
Found at i:7756115 original size:15 final size:16
Alignment explanation
Indices: 7756095--7756126 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7756085 ATATATAATA
7756095 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
7756110 ATATAAAAATTACATT
1 ATATAAAAATTACATT
7756126 A
1 A
7756127 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:7756342 original size:116 final size:113
Alignment explanation
Indices: 7756184--7756621 Score: 551
Period size: 116 Copynumber: 3.9 Consensus size: 113
7756174 ATACTAACAC
* * * * *
7756184 AAAATAACTATAAAATTATTTTTT-TAAGTACATTACTAAAAAAAAAATCACAATACACTAATAC
1 AAAATAGCTATAAAAATATTTTTTAAAAATATATTACT---AAAAAAATCACAATACACTAAT--
* *
7756248 ACACTAAACCAGTAAACACCAACAA-TATATAACCTAATATTAAATTACTAAT
61 ACACTAAACCACTAAACACCAACAATTATATAACCTAATCTTAAATTACTAAT
7756300 AAAATAGCTATAAAAATATATTTTT-AAAATATATTACT--AAAAA--A-AAT-CAC-AATACAC
1 AAAATAGCTATAAAAATAT-TTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATACAC
*
7756357 TAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
65 TAAACCACTAAACACCAACAA-TTATATAACCTAATCTTAAATTACTAAT
*
7756407 AAAATAGCTATAAAAATATTTTTTTTAAAAATATATTACTAAAAAAATTACAATACACTAATACA
1 AAAATAGCTATAAAAATA--TTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATACA
* *
7756472 TTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
64 CTAAACCACTAAACACCAACAA-TTATATAACCTAATCTTAAATTACTAAT
*
7756523 AAAATAGCTAT--AACT-TTTTTTAAAAAATATATTACTAAAAAAATCACAATACACTAATACAC
1 AAAATAGCTATAAAAATATTTTTT-AAAAATATATTACTAAAAAAATCACAATACACTAATACAC
* *
7756585 TAAACTACTAAACACTAACAATTTATATAACCTAATC
65 TAAACCACTAAACACCAACAA-TTATATAACCTAATC
7756622 AATTATAAAA
Statistics
Matches: 295, Mismatches: 13, Indels: 32
0.87 0.04 0.09
Matches are distributed among these distances:
105 23 0.08
107 47 0.16
108 8 0.03
109 17 0.06
110 1 0.00
111 11 0.04
112 79 0.27
113 1 0.00
114 6 0.02
115 3 0.01
116 84 0.28
117 15 0.05
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.31
Consensus pattern (113 bp):
AAAATAGCTATAAAAATATTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATACACT
AAACCACTAAACACCAACAATTATATAACCTAATCTTAAATTACTAAT
Found at i:7756603 original size:112 final size:112
Alignment explanation
Indices: 7756224--7756693 Score: 569
Period size: 112 Copynumber: 4.3 Consensus size: 112
7756214 CATTACTAAA
* * *
7756224 AAAAAAATCACAATACACTAATACACACTAAACCAGTAAACACCAACAA--TATATAACCTAATA
1 AAAAAAATCACAATACACTAAT--ACACTAAACCACTAAACACTAACAATTTATATAACCTAATC
7756287 TTAAATTACTAATAAAATAGCTATAAAAATATATTTTT-AAAATATATTACT
64 TTAAATTACTAATAAAATAGCTAT-AAAAT-T-TTTTTAAAAATATATTACT
7756338 --AAAAA--A-AAT-CAC-AATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTT
1 AAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTT
7756396 AAATTACTAATAAAATAGCTATAAAAATATTTTTTTTAAAAATATATTACT
66 AAATTACTAATAAAATAGCTAT--AAA-A-TTTTTTTAAAAATATATTACT
* *
7756447 AAAAAAATTACAATACACTAATACATTAAACCACTAAACACTAACAATTTATATAACCTAATCTT
1 AAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTT
*
7756512 AAATTACTAATAAAATAGCTAT-AACTTTTTTTAAAAAATATATTACT
66 AAATTACTAATAAAATAGCTATAAAATTTTTTT-AAAAATATATTACT
*
7756559 AAAAAAATCACAATACACTAATACACTAAACTACTAAACACTAACAATTTATATAACCTAATC--
1 AAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTT
* *
7756622 -AA-T--T-ATAAAAT---TAT----TTTTTTAAAATATATTATTACT
66 AAATTACTAATAAAATAGCTATAAAATTTTTTTAAAAATA-TATTACT
*
7756658 AAAAAAATCATAATACACTAATACACTAAA-CACTAA
1 AAAAAAATCACAATACACTAATACACTAAACCACTAA
7756694 CAATTTGTAA
Statistics
Matches: 329, Mismatches: 12, Indels: 46
0.85 0.03 0.12
Matches are distributed among these distances:
98 11 0.03
99 42 0.13
102 3 0.01
105 30 0.09
106 1 0.00
107 40 0.12
108 13 0.04
109 20 0.06
110 2 0.01
111 12 0.04
112 79 0.24
113 3 0.01
114 3 0.01
115 3 0.01
116 67 0.20
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.31
Consensus pattern (112 bp):
AAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTT
AAATTACTAATAAAATAGCTATAAAATTTTTTTAAAAATATATTACT
Found at i:7756648 original size:223 final size:219
Alignment explanation
Indices: 7756126--7756626 Score: 575
Period size: 223 Copynumber: 2.3 Consensus size: 219
7756116 AAATTACATT
* * * *
7756126 AAAAAATCACAAAACACTAAACTA-TAAACACTAACAATTTATA-ATCAT-ATACT-A--AC--A
1 AAAAAATCACAATACACTAAACCACTAAACACTAACAATTTATATAACCTAAT-CTAATTACTAA
* * * * *
7756183 CAAAATAACTATAAAATTA-TTTTTTT--AAGTACATTACTAAAAAAAAAATCACAATACACTAA
65 TAAAATAGCTATAAAAATATTTTTTTTAAAAATATATTACT---AAAAAAATCACAATACACTAA
*
7756245 TACACACTAAACCAGTAAACACCAACAATATATAACCTAATATTAAATTACTAATAAAATAGCTA
127 TA-ACACTAAACCACTAAACACCAACAATATATAACCTAATATTAAATTACTAATAAAATAGCTA
7756310 TAAAAATATATTTTTAAAATATATTACTAA
191 T-AAAATATATTTTTAAAATATATTACTAA
7756340 AAAAAATCACAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTA
1 AAAAAATCACAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATC-T-AATTACTA
*
7756405 ATAAAATAGCTATAAAAATATTTTTTTTAAAAATATATTACTAAAAAAATTACAATACACTAAT-
64 ATAAAATAGCTATAAAAATATTTTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATA
* * *
7756469 ACATTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTAT
129 ACACTAAACCACTAAACACCAACAA--TATATAACCTAATATTAAATTACTAATAAAATAGCTAT
*
7756534 -AACT-T-TTTTTAAAAAATATATTACTAAAA
192 AAAATATATTTTT--AAAATATATTACT--AA
*
7756563 AAATCACAATACACTAATACACTAAACTACTAAACACTAACAATTTATATAACCTAATC-AATTA
1 AAA--A-AAT-CAC-AATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTAATTA
7756627 TAAAATTATT
Statistics
Matches: 247, Mismatches: 16, Indels: 37
0.82 0.05 0.12
Matches are distributed among these distances:
214 22 0.09
215 19 0.08
216 4 0.02
217 3 0.01
219 6 0.02
220 1 0.00
221 40 0.16
223 80 0.32
224 7 0.03
225 6 0.02
226 13 0.05
227 3 0.01
228 43 0.17
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.30
Consensus pattern (219 bp):
AAAAAATCACAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTAATTACTAAT
AAAATAGCTATAAAAATATTTTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATAAC
ACTAAACCACTAAACACCAACAATATATAACCTAATATTAAATTACTAATAAAATAGCTATAAAA
TATATTTTTAAAATATATTACTAA
Found at i:7756903 original size:6 final size:6
Alignment explanation
Indices: 7756894--7756929 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
7756884 CCCTTTTTTT
* *
7756894 CTTCTT CTTCTT CTTCTC CTTCTC CTTCTC CTTCTC
1 CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC
7756930 ATTTCTCTCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (6 bp):
CTTCTC
Found at i:7757158 original size:27 final size:27
Alignment explanation
Indices: 7757113--7757164 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
7757103 AGGTGGGAGT
*
7757113 GTCGTGCCTACCTGTCAGGCACGACTA
1 GTCGTGCCTACCTGACAGGCACGACTA
* *
7757140 GTCGTGCCTACTTGACAGGCTCGAC
1 GTCGTGCCTACCTGACAGGCACGAC
7757165 CCGTTTCGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.17, C:0.33, G:0.27, T:0.23
Consensus pattern (27 bp):
GTCGTGCCTACCTGACAGGCACGACTA
Found at i:7758235 original size:12 final size:12
Alignment explanation
Indices: 7758220--7758245 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7758210 AATTGAGAAA
7758220 AAATAAAAAAAT
1 AAATAAAAAAAT
7758232 AAATAAAAAAAT
1 AAATAAAAAAAT
7758244 AA
1 AA
7758246 GAAAATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAATAAAAAAAT
Found at i:7758240 original size:20 final size:20
Alignment explanation
Indices: 7758217--7758255 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7758207 AAAAATTGAG
7758217 AAAAAATAAAAAAATAAATA
1 AAAAAATAAAAAAATAAATA
*
7758237 AAAAAATAAGAAAATAAAT
1 AAAAAATAAAAAAATAAAT
7758256 TAAAGTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (20 bp):
AAAAAATAAAAAAATAAATA
Found at i:7763585 original size:13 final size:14
Alignment explanation
Indices: 7763561--7763589 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7763551 GAATTTTATT
7763561 TATTTTTCAAAAAA
1 TATTTTTCAAAAAA
7763575 TATTTTT-AAAAAA
1 TATTTTTCAAAAAA
7763588 TA
1 TA
7763590 AATAAAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (14 bp):
TATTTTTCAAAAAA
Found at i:7767343 original size:24 final size:24
Alignment explanation
Indices: 7767316--7767364 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7767306 TGAACAATAT
7767316 CTCAAGCATGTCCCTTCTGCAGCC
1 CTCAAGCATGTCCCTTCTGCAGCC
7767340 CTCAAGCATGTCCCTTCTGCAGCC
1 CTCAAGCATGTCCCTTCTGCAGCC
7767364 C
1 C
7767365 CCCTTACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.43, G:0.16, T:0.24
Consensus pattern (24 bp):
CTCAAGCATGTCCCTTCTGCAGCC
Found at i:7776772 original size:42 final size:42
Alignment explanation
Indices: 7776713--7776804 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
7776703 CTCAAAATGT
* * *
7776713 CACACGGCCAAGGCACACGTCGGTGTGCTAGGCTGTGTTCCC
1 CACACGGCCAAGGCACACGCCCGTGTGCTAGGCCGTGTTCCC
7776755 CACACGGCCAAGGCACACGCCCGTGTGCTAGGCCGTGTTCCC
1 CACACGGCCAAGGCACACGCCCGTGTGCTAGGCCGTGTTCCC
7776797 CACACGGC
1 CACACGGC
7776805 TGAGACACAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.17, C:0.38, G:0.29, T:0.15
Consensus pattern (42 bp):
CACACGGCCAAGGCACACGCCCGTGTGCTAGGCCGTGTTCCC
Found at i:7781351 original size:47 final size:47
Alignment explanation
Indices: 7781244--7781361 Score: 132
Period size: 47 Copynumber: 2.5 Consensus size: 47
7781234 TTTGTGTGCG
* * * * * *
7781244 AGTGTAAGACATGCCTGGGACAT-GCTTCGGATGCACTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGCATCCACGATAAGAGCT
* *
7781290 AGTATAAGACCATGTCTGGGACATGGCATCAGCATCCA-GATAAGGGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATC-GCATCCACGATAAGAGCT
7781338 AGTGTAAGACATGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
7781362 CTTCAGCCAT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
46 8 0.13
47 28 0.47
48 19 0.32
49 5 0.08
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGCATCCACGATAAGAGCT
Found at i:7781847 original size:7 final size:7
Alignment explanation
Indices: 7781835--7781868 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
7781825 TACTCTCTTT
7781835 CTTTTCC
1 CTTTTCC
7781842 CTTTTCC
1 CTTTTCC
7781849 CTTTTCC
1 CTTTTCC
7781856 CTTTTCC
1 CTTTTCC
7781863 CTTTTC
1 CTTTTC
7781869 TTTCAGTACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (7 bp):
CTTTTCC
Found at i:7802590 original size:16 final size:16
Alignment explanation
Indices: 7802569--7802603 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
7802559 CCAAAATTTG
7802569 AATTTATTTGTTCCAA
1 AATTTATTTGTTCCAA
7802585 AATTTATTTGTTCCAA
1 AATTTATTTGTTCCAA
7802601 AAT
1 AAT
7802604 ATTTACCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (16 bp):
AATTTATTTGTTCCAA
Found at i:7802827 original size:14 final size:14
Alignment explanation
Indices: 7802808--7802834 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7802798 GGACACTCCA
7802808 TTAATATTTCATCT
1 TTAATATTTCATCT
7802822 TTAATATTTCATC
1 TTAATATTTCATC
7802835 GTTGGACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.56
Consensus pattern (14 bp):
TTAATATTTCATCT
Found at i:7803738 original size:7 final size:7
Alignment explanation
Indices: 7803723--7803756 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
7803713 TAACCATAAC
7803723 AAAAA-A
1 AAAAATA
7803729 AAAAATA
1 AAAAATA
7803736 AAAAA-A
1 AAAAATA
7803742 AAAAATA
1 AAAAATA
7803749 AAAAATA
1 AAAAATA
7803756 A
1 A
7803757 TAACTTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 11 0.42
7 15 0.58
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (7 bp):
AAAAATA
Found at i:7803741 original size:13 final size:13
Alignment explanation
Indices: 7803723--7803753 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
7803713 TAACCATAAC
7803723 AAAAAAAAAAATA
1 AAAAAAAAAAATA
7803736 AAAAAAAAAAATA
1 AAAAAAAAAAATA
7803749 AAAAA
1 AAAAA
7803754 TAATAACTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.94, C:0.00, G:0.00, T:0.06
Consensus pattern (13 bp):
AAAAAAAAAAATA
Found at i:7803910 original size:25 final size:26
Alignment explanation
Indices: 7803859--7803910 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
7803849 AACTATAATC
*
7803859 ATGCATTAATCCTCAAAATCATTGAT
1 ATGCATTAATCCTCAAAATCATAGAT
*
7803885 ATGCATTAATCCTCAAATTCA-AGAT
1 ATGCATTAATCCTCAAAATCATAGAT
7803910 A
1 A
7803911 ATAAAAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (26 bp):
ATGCATTAATCCTCAAAATCATAGAT
Found at i:7816246 original size:16 final size:16
Alignment explanation
Indices: 7816225--7816260 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
7816215 TAATTGTCGT
7816225 TGGAGGGGATTTAGCC
1 TGGAGGGGATTTAGCC
7816241 TGGAGGGGATTTAGCC
1 TGGAGGGGATTTAGCC
7816257 TGGA
1 TGGA
7816261 CTGGTAATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.11, G:0.44, T:0.25
Consensus pattern (16 bp):
TGGAGGGGATTTAGCC
Found at i:7820066 original size:93 final size:92
Alignment explanation
Indices: 7819938--7820297 Score: 490
Period size: 93 Copynumber: 3.9 Consensus size: 92
7819928 TGATGTCATA
* * * *
7819938 GTATCTTTCAACTATGGTTTTACTC-GTTTTC-TGTCATGTTGCCATGGTATCTTTCAACCATGA
1 GTATCTTTCAACCATGGTCTTACTCAG--TTCATGTCAGGTTGCCATGGTATCTTTCAACCATGG
** * ** *
7820001 TCTTATTCATTTTACCGTCATGTTGCCATG
64 TCTTACACATTTCA-TATCACGTTGCCATG
7820031 GTATCTTTCAACCATGGTCTTACTCAGTTCATGTCAGGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACTCAGTTCATGTCAGGTTGCCATGGTATCTTTCAACCATGGTC
7820096 TTACACATTTCATATCACGTTGCCATG
66 TTACACATTTCATATCACGTTGCCATG
* * ** *
7820123 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGT
1 GTATCTTTCAACCATGGTCTTACTCA-GTTCATGTCAGGTTGCCATGGTATCTTTCAACCATGGT
*
7820188 TTTACACATTTCATATCACGTTGCCATG
65 CTTACACATTTCATATCACGTTGCCATG
* * *
7820216 GTATCTTTCAACCATGGTCTTACACAATTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACTCAGTTCATGTCAGGTTGCCATGGTATCTTTCAACCATGGTC
*
7820281 TTACACATTCCATATCA
66 TTACACATTTCATATCA
7820298 GAGAGCACAC
Statistics
Matches: 239, Mismatches: 25, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
92 89 0.37
93 149 0.62
94 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (92 bp):
GTATCTTTCAACCATGGTCTTACTCAGTTCATGTCAGGTTGCCATGGTATCTTTCAACCATGGTC
TTACACATTTCATATCACGTTGCCATG
Found at i:7820089 original size:46 final size:46
Alignment explanation
Indices: 7819938--7820289 Score: 454
Period size: 46 Copynumber: 7.6 Consensus size: 46
7819928 TGATGTCATA
* * *
7819938 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATGTCATGTTGCCATG
* * * *
7819984 GTATCTTTCAACCATGATCTTATTCATTTTACCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCA-TGTCATGTTGCCATG
* *
7820031 GTATCTTTCAACCATGGTCTTACTCAGTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATG
* * *
7820077 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATG
* **
7820123 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCATGTTGCCATG
* * * *
7820170 GTATCTTTCAACCATGGTTTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATG
* * * *
7820216 GTATCTTTCAACCATGGTCTTACACAATTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATG
*
7820262 GTATCTTTCAACCATGGTCTTACACATT
1 GTATCTTTCAACCATGGTCTTACTCATT
7820290 CCATATCAGA
Statistics
Matches: 269, Mismatches: 34, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
45 3 0.01
46 186 0.69
47 80 0.30
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATG
Found at i:7820201 original size:139 final size:139
Alignment explanation
Indices: 7819938--7820283 Score: 541
Period size: 139 Copynumber: 2.5 Consensus size: 139
7819928 TGATGTCATA
* * * * * * *
7819938 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATGGTATCTTTCAACCATGAT
1 GTATCTTTCAACCATGGTCTTACAC-ATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGT
* *
7820002 CTTATTCATTTTACCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCAGTTCATGTCA
65 CTTATTCATTTTACCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACAGTTCATATCA
*
7820067 GGTTGCCATG
130 CGTTGCCATG
7820077 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
* * *
7820142 TTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTTTTACACATTTCATATCAC
66 TTATTCATTTTACCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACAGTTCATATCAC
7820207 GTTGCCATG
131 GTTGCCATG
* *
7820216 GTATCTTTCAACCATGGTCTTACACAATTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
7820281 TTA
66 TTA
7820284 CACATTCCAT
Statistics
Matches: 191, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
138 4 0.02
139 187 0.98
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (139 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
TTATTCATTTTACCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACAGTTCATATCAC
GTTGCCATG
Found at i:7825621 original size:25 final size:28
Alignment explanation
Indices: 7825571--7825621 Score: 72
Period size: 25 Copynumber: 1.9 Consensus size: 28
7825561 TAATATTTTT
*
7825571 GTATGAAAATTGATATGATAGGAAAATC
1 GTATGAAAATTGATATGATAGAAAAATC
7825599 GTATGAAAA-T-AT-TGATAGAAAAA
1 GTATGAAAATTGATATGATAGAAAAA
7825622 ATTTACCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 2 0.09
27 1 0.05
28 9 0.41
ACGTcount: A:0.51, C:0.02, G:0.20, T:0.27
Consensus pattern (28 bp):
GTATGAAAATTGATATGATAGAAAAATC
Found at i:7829964 original size:5 final size:5
Alignment explanation
Indices: 7829954--7829979 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7829944 ATATCATTAC
7829954 ACAAA ACAAA ACAAA ACAAA ACAAA A
1 ACAAA ACAAA ACAAA ACAAA ACAAA A
7829980 GAAACATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (5 bp):
ACAAA
Found at i:7831074 original size:31 final size:31
Alignment explanation
Indices: 7831039--7831119 Score: 87
Period size: 29 Copynumber: 2.7 Consensus size: 31
7831029 TTTATTTAGT
*
7831039 TATTTTTAATAATAAAAGAATTAAATTGATA
1 TATTTTTAATAATAAAAGAACTAAATTGATA
* *
7831070 TA--TTTAATAATAAATGAACTAATTTGATA
1 TATTTTTAATAATAAAAGAACTAAATTGATA
* *
7831099 AAGTTTTT-ATAATACAAGAAC
1 TA-TTTTTAATAATAAAAGAAC
7831120 CTATAAGATA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
29 25 0.61
31 13 0.32
32 3 0.07
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.40
Consensus pattern (31 bp):
TATTTTTAATAATAAAAGAACTAAATTGATA
Found at i:7834156 original size:14 final size:14
Alignment explanation
Indices: 7834111--7834186 Score: 59
Period size: 13 Copynumber: 5.6 Consensus size: 14
7834101 TGCCCTAAAT
*
7834111 CCCAAACCT-AATC
1 CCCAAACCTCAAAC
*
7834124 CCCCAA-CTCAAAC
1 CCCAAACCTCAAAC
*
7834137 CCCAAACCTCCAAC
1 CCCAAACCTCAAAC
*
7834151 CTCAAA-CTCAAAC
1 CCCAAACCTCAAAC
** * *
7834164 CTTAAATCTCGAAC
1 CCCAAACCTCAAAC
7834178 CCCAAACCT
1 CCCAAACCT
7834187 TAAAGATTAG
Statistics
Matches: 49, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
12 2 0.04
13 24 0.49
14 23 0.47
ACGTcount: A:0.38, C:0.46, G:0.01, T:0.14
Consensus pattern (14 bp):
CCCAAACCTCAAAC
Found at i:7834162 original size:20 final size:20
Alignment explanation
Indices: 7834126--7834186 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
7834116 ACCTAATCCC
7834126 CCAACTCAAACCCCAAACCT
1 CCAACTCAAACCCCAAACCT
*
7834146 CCAACCTCAAA-CTCAAACCT
1 CCAA-CTCAAACCCCAAACCT
** *
7834166 TAAATCTCGAACCCCAAACCT
1 CCAA-CTCAAACCCCAAACCT
7834187 TAAAGATTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 19 0.58
21 14 0.42
ACGTcount: A:0.39, C:0.44, G:0.02, T:0.15
Consensus pattern (20 bp):
CCAACTCAAACCCCAAACCT
Found at i:7834178 original size:27 final size:27
Alignment explanation
Indices: 7834111--7834184 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
7834101 TGCCCTAAAT
*
7834111 CCCAAACCT--AATCCCCCAACTCAAAC
1 CCCAAACCTCCAA-CCCCAAACTCAAAC
*
7834137 CCCAAACCTCCAACCTCAAACTCAAAC
1 CCCAAACCTCCAACCCCAAACTCAAAC
** * *
7834164 CTTAAATCTCGAACCCCAAAC
1 CCCAAACCTCCAACCCCAAAC
7834185 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 9 0.23
27 28 0.72
28 2 0.05
ACGTcount: A:0.39, C:0.46, G:0.01, T:0.14
Consensus pattern (27 bp):
CCCAAACCTCCAACCCCAAACTCAAAC
Found at i:7834306 original size:21 final size:21
Alignment explanation
Indices: 7834269--7834316 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
7834259 TGAGATTCTA
** *
7834269 GATTTAAAGTTTTGGATTTGG
1 GATTTAAAGTTCAGGATTCGG
*
7834290 GGTTTAAAGTTCAGGATTCGG
1 GATTTAAAGTTCAGGATTCGG
7834311 GATTTA
1 GATTTA
7834317 GGGTAAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.04, G:0.29, T:0.42
Consensus pattern (21 bp):
GATTTAAAGTTCAGGATTCGG
Found at i:7839044 original size:23 final size:23
Alignment explanation
Indices: 7839017--7839067 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
7839007 GAAATTTAAT
7839017 TTAATTTAAATTATTATTATTTA
1 TTAATTTAAATTATTATTATTTA
*
7839040 TTAATTTAATTTATTATTATTTA
1 TTAATTTAAATTATTATTATTTA
7839063 TTAAT
1 TTAAT
7839068 ATACTTTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TTAATTTAAATTATTATTATTTA
Found at i:7839061 original size:10 final size:10
Alignment explanation
Indices: 7839027--7839065 Score: 51
Period size: 10 Copynumber: 3.6 Consensus size: 10
7839017 TTAATTTAAA
7839027 TTATTATTAT
1 TTATTATTAT
7839037 TTATTAATTTAAT
1 TTATT-A-TT-AT
7839050 TTATTATTAT
1 TTATTATTAT
7839060 TTATTA
1 TTATTA
7839066 ATATACTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 13 0.50
11 3 0.12
12 3 0.12
13 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTATTATTAT
Found at i:7853669 original size:46 final size:46
Alignment explanation
Indices: 7853619--7853791 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
7853609 TGGTTGAGCA
*
7853619 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
7853665 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
7853712 TCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
7853758 GCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
7853792 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:7853775 original size:93 final size:93
Alignment explanation
Indices: 7853616--7853786 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
7853606 GGATGGTTGA
* *
7853616 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGGCCGAACTCGTTGAGT
7853681 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
7853709 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGGCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGGCCGAACTCGTTGAGT
7853774 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
7853787 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGGCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7854053 original size:19 final size:20
Alignment explanation
Indices: 7854016--7854053 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
7854006 ATAAGGTGGT
7854016 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
7854036 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
7854054 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:7861624 original size:41 final size:43
Alignment explanation
Indices: 7861529--7861650 Score: 194
Period size: 47 Copynumber: 2.8 Consensus size: 43
7861519 GCATCCATAG
7861529 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATT
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACA-T
7861573 TCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA-TTACA-
1 T---GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
7861617 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC
7861651 CAAATATCCC
Statistics
Matches: 75, Mismatches: 0, Indels: 9
0.89 0.00 0.11
Matches are distributed among these distances:
41 33 0.44
44 2 0.03
46 5 0.07
47 35 0.47
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (43 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
Found at i:7864066 original size:30 final size:30
Alignment explanation
Indices: 7864022--7864110 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
7864012 CAAAGATAAC
*
7864022 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
7864051 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
7864081 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
7864111 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:7864070 original size:15 final size:14
Alignment explanation
Indices: 7864022--7864104 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
7864012 CAAAGATAAC
*
7864022 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
7864036 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
7864051 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
7864066 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
7864081 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
7864096 AAGAAACCC
1 AAGAAACCC
7864105 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:7864110 original size:15 final size:15
Alignment explanation
Indices: 7864033--7864110 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
7864023 AGAAAACCGA
7864033 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
7864048 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
7864062 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
7864077 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
7864093 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
7864108 ATA
1 ATA
7864111 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:7867185 original size:44 final size:44
Alignment explanation
Indices: 7867072--7867196 Score: 205
Period size: 47 Copynumber: 2.8 Consensus size: 44
7867062 CATCCATAGG
*
7867072 TGAACTCGGACTCAACTCAACGAGTTCGTATGCCTAGTTACATT
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATT
*
7867116 TCACGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTTACATT
1 T---GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATT
7867163 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC
7867197 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
44 33 0.44
47 42 0.56
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (44 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATT
Found at i:7872637 original size:14 final size:13
Alignment explanation
Indices: 7872614--7872646 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
7872604 TGGATATCAA
7872614 AACAAGAATTAAG
1 AACAAGAATTAAG
7872627 AACACAGAATTAAG
1 AACA-AGAATTAAG
7872641 AACAAG
1 AACAAG
7872647 TTAAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.61, C:0.12, G:0.15, T:0.12
Consensus pattern (13 bp):
AACAAGAATTAAG
Found at i:7876688 original size:7 final size:7
Alignment explanation
Indices: 7876676--7876700 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7876666 AGTGCAGGGT
7876676 ATTTTGA
1 ATTTTGA
7876683 ATTTTGA
1 ATTTTGA
7876690 ATTTTGA
1 ATTTTGA
7876697 ATTT
1 ATTT
7876701 GGGCGCGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
ATTTTGA
Found at i:7889149 original size:53 final size:51
Alignment explanation
Indices: 7889088--7889217 Score: 143
Period size: 52 Copynumber: 2.5 Consensus size: 51
7889078 TACCGATACA
* * *
7889088 ATATCCCAGATATGGTCTTATACGGAATCACATTATCACATCACACCGACGTC
1 ATATCCCAGCTATGGTCTTATACGGAA-CAC-GTATCACATCACACCGACGCC
* ** ** *
7889141 ATATCCCAGCTCTGGTCTTATACGGGAACACGTATCATGTTGCACCGATGCC
1 ATATCCCAGCTATGGTCTTATAC-GGAACACGTATCACATCACACCGACGCC
*
7889193 ATAGCCCAGCTATGGTCTTATACGG
1 ATATCCCAGCTATGGTCTTATACGG
7889218 GCGCATATAT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
51 2 0.03
52 35 0.54
53 24 0.37
54 4 0.06
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (51 bp):
ATATCCCAGCTATGGTCTTATACGGAACACGTATCACATCACACCGACGCC
Found at i:7895933 original size:6 final size:6
Alignment explanation
Indices: 7895922--7895991 Score: 104
Period size: 6 Copynumber: 11.7 Consensus size: 6
7895912 GAAAAGAGAT
*
7895922 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAAAG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
* * *
7895970 AAAAAG AAAAAG AAAAAG AAAA
1 AAAATG AAAATG AAAATG AAAA
7895992 AATTGTGTTT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.10
Consensus pattern (6 bp):
AAAATG
Found at i:7895992 original size:6 final size:6
Alignment explanation
Indices: 7895911--7895992 Score: 83
Period size: 6 Copynumber: 13.2 Consensus size: 6
7895901 TGAAGGATAG
* * * * *
7895911 AGAAAA GAGATAAA ATGAAAA TGAAAA TGAAAA TGAAAA TGAAAA TGAAAA
1 AGAAAA -AGA-AAA A-GAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
*
7895962 TGAAAA AGAAAA AGAAAA AGAAAA AGAAAA A
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA A
7895993 ATTGTGTTTA
Statistics
Matches: 71, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
6 59 0.83
7 7 0.10
8 5 0.07
ACGTcount: A:0.73, C:0.00, G:0.17, T:0.10
Consensus pattern (6 bp):
AGAAAA
Found at i:7897704 original size:6 final size:7
Alignment explanation
Indices: 7897687--7897713 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7897677 TGAAGGTGAG
7897687 TTTTTTA
1 TTTTTTA
7897694 TTTTTTA
1 TTTTTTA
7897701 TTTTTTA
1 TTTTTTA
7897708 TTTTTT
1 TTTTTT
7897714 TGCATGCCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:7900070 original size:17 final size:17
Alignment explanation
Indices: 7900048--7900080 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7900038 CCCACTTTAA
7900048 CCAAACTAATAACTTAG
1 CCAAACTAATAACTTAG
7900065 CCAAACTAATAACTTA
1 CCAAACTAATAACTTA
7900081 ACCACTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.24, G:0.03, T:0.24
Consensus pattern (17 bp):
CCAAACTAATAACTTAG
Found at i:7902190 original size:2 final size:2
Alignment explanation
Indices: 7902183--7902213 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7902173 GGATTATAAT
*
7902183 TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7902214 TTGTGTGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (2 bp):
TC
Found at i:7906357 original size:22 final size:22
Alignment explanation
Indices: 7906315--7906358 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7906305 TTCTCATTTT
*
7906315 TTATAAATTTATAAATCTTTAA
1 TTATAAATTTATAAATATTTAA
*
7906337 TTATAAAATTT-TGAATATTTAA
1 TTAT-AAATTTATAAATATTTAA
7906359 AATATGACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
TTATAAATTTATAAATATTTAA
Found at i:7906950 original size:24 final size:24
Alignment explanation
Indices: 7906933--7906984 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
7906923 TTATTATTCT
7906933 AAATATTCAAAAATTTATAATTATA
1 AAATATT-AAAAATTTATAATTATA
* * *
7906958 AAATATTAAAAATATAAAATTAGA
1 AAATATTAAAAATTTATAATTATA
7906982 AAA
1 AAA
7906985 ACAAAACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATATTAAAAATTTATAATTATA
Found at i:7907188 original size:22 final size:21
Alignment explanation
Indices: 7907162--7907217 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
7907152 CAATTATTAA
7907162 ATAAAATA-AAATTATAAAAACT
1 ATAAAATATAAA-TAT-AAAACT
7907184 ATAAAATATAAATATAAAACT
1 ATAAAATATAAATATAAAACT
*
7907205 AAAAACATATAAA
1 ATAAA-ATATAAA
7907218 ATTTGTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 10 0.32
22 18 0.58
23 3 0.10
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
ATAAAATATAAATATAAAACT
Found at i:7907194 original size:29 final size:29
Alignment explanation
Indices: 7907162--7907219 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
7907152 CAATTATTAA
7907162 ATAAA-ATAAAATTATAAAAAC-TATAAAAT
1 ATAAATATAAAA--ATAAAAACATATAAAAT
*
7907191 ATAAATATAAAACTAAAAACATATAAAAT
1 ATAAATATAAAAATAAAAACATATAAAAT
7907220 TTGTTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 7 0.27
29 13 0.50
30 6 0.23
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (29 bp):
ATAAATATAAAAATAAAAACATATAAAAT
Found at i:7911983 original size:11 final size:11
Alignment explanation
Indices: 7911967--7911998 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
7911957 ACATAAGGTT
7911967 ATAAAATAAAA
1 ATAAAATAAAA
7911978 ATAAAATAAAA
1 ATAAAATAAAA
*
7911989 ACAAAATAAA
1 ATAAAATAAA
7911999 TAAAAGATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:7914928 original size:12 final size:12
Alignment explanation
Indices: 7914911--7914941 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7914901 GAAGCAGGGG
7914911 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
7914923 AGAAAAAGGGAA
1 AGAAAAAGAGAA
7914935 AGAAAAA
1 AGAAAAA
7914942 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Done.