Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 260 of 362
Found at i:87786634 original size:92 final size:92
Alignment explanation
Indices: 87786466--87786646 Score: 238
Period size: 92 Copynumber: 2.0 Consensus size: 92
87786456 GTGTGCTTTC
*** * * *
87786466 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGA
* *** *
87786531 CTATGGTTGAAAGATACCATGGCAACG
66 CCATAACTGAAAGACACCATGGCAACG
87786558 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAG
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAG
*
87786622 ACCATAACTGAAAGACACTATGGCA
65 ACCATAACTGAAAGACACCATGGCA
87786647 TCATGTCAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
91 1 0.01
92 75 0.99
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (92 bp):
TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGA
CCATAACTGAAAGACACCATGGCAACG
Found at i:87794680 original size:28 final size:28
Alignment explanation
Indices: 87794648--87794707 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
87794638 AAAAATGATA
87794648 TTTTTAAATATTTATGAAATTAGGTCAT
1 TTTTTAAATATTTATGAAATTAGGTCAT
* **
87794676 TTTTTTAATATTTATGGGATTAGGTCAT
1 TTTTTAAATATTTATGAAATTAGGTCAT
87794704 TTTT
1 TTTT
87794708 CTTTTTTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.03, G:0.13, T:0.55
Consensus pattern (28 bp):
TTTTTAAATATTTATGAAATTAGGTCAT
Found at i:87794874 original size:22 final size:22
Alignment explanation
Indices: 87794847--87794893 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
87794837 TCTTAACCAA
* *
87794847 TTTAGGGTTTTTCTTTTAGGGT
1 TTTAGGGTATTTCTTTTAGGAT
*
87794869 TTTAGGGTATTTGTTTTAGGAT
1 TTTAGGGTATTTCTTTTAGGAT
87794891 TTT
1 TTT
87794894 TAAAAGACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.13, C:0.02, G:0.26, T:0.60
Consensus pattern (22 bp):
TTTAGGGTATTTCTTTTAGGAT
Found at i:87805541 original size:163 final size:163
Alignment explanation
Indices: 87805364--87805681 Score: 476
Period size: 163 Copynumber: 2.0 Consensus size: 163
87805354 ATTTCGTTCT
* * * *
87805364 TCTATTATTATTTTTTATTTGCAAATGACTATTAAAACTAATAAAATTTGCTTTGGGA-TTTTTC
1 TCTATTATTATTTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGCTTTGAGATTTTTTC
* * * *
87805428 CAACTGTTTAATAGATTTTATTCGATTTTGTTTCCAAATTAAAAGTAAATAAAATTCGTTTCGAA
66 C-ACCGTTTAACAGATTTTATTCAATTTTGTTTCCAAATTAAAAGTAAATAAAATCCGTTTCGAA
* *
87805493 ATTTATTCTTGCCGTTCAACAGATTTCTTTTTCC
130 ATTTATTCTCGCCCTTCAACAGATTTCTTTTTCC
*
87805527 TCTATTATTATTTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGTTTTGAGATTTTTTC
1 TCTATTATTATTTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGCTTTGAGATTTTTTC
* **
87805592 CGCCGTTTAACAGATTTTATTCAATTTTGTTTCCAAATTAAAAGTAAATAAAATCCGTTTCGGGA
66 CACCGTTTAACAGATTTTATTCAATTTTGTTTCCAAATTAAAAGTAAATAAAATCCGTTTCGAAA
* *
87805657 TTTGTTCTCGCCCTTCAACGGATTT
131 TTTATTCTCGCCCTTCAACAGATTT
87805682 TATTGTATTA
Statistics
Matches: 138, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
163 131 0.95
164 7 0.05
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (163 bp):
TCTATTATTATTTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGCTTTGAGATTTTTTC
CACCGTTTAACAGATTTTATTCAATTTTGTTTCCAAATTAAAAGTAAATAAAATCCGTTTCGAAA
TTTATTCTCGCCCTTCAACAGATTTCTTTTTCC
Found at i:87805975 original size:74 final size:73
Alignment explanation
Indices: 87805729--87806021 Score: 344
Period size: 74 Copynumber: 4.0 Consensus size: 73
87805719 TAAAGGTAAA
* * *
87805729 TAAAATGTGTTTCGGAATTGATTC-T-CACGTTCAACGATTTTATTCC-AA-TTTTTTTATTTCC
1 TAAAATCTGTTTTGGGATTGATTCTTGC-CGTTCAACGATTTTATTCCAAATTTTTTTTATTTCC
87805790 AAAAATGAG
65 AAAAATGAG
* * * * *
87805799 TAAAATCTGCTTCGAGATTGATTTTTGCCGTTCAACGATTTTATTCTAAATTTTTTTTATTTCCA
1 TAAAATCTGTTTTGGGATTGATTCTTGCCGTTCAACGATTTTATTCCAAATTTTTTTTATTTCCA
*
87805864 AAAATGAA
66 AAAATGAG
*
87805872 TAAAATCTGTTTCT-GGATTGATTCCTGCCGTTCAACGATTTTATTCCAAATTTTGTTTTATTTC
1 TAAAATCTGTTT-TGGGATTGATTCTTGCCGTTCAACGATTTTATTCCAAATTTT-TTTTATTTC
** *
87805936 CGTAAACGAG
64 CAAAAATGAG
* * ** *
87805946 TAAAATTTGTTTTGGGATTTATTCTTGCCGTTCAATAATTTTATTTCAAATTTTGTTTTATTTCC
1 TAAAATCTGTTTTGGGATTGATTCTTGCCGTTCAACGATTTTATTCCAAATTTT-TTTTATTTCC
*
87806011 AAAACTGAG
65 AAAAATGAG
87806020 TA
1 TA
87806022 TTTAAACTAA
Statistics
Matches: 189, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
70 19 0.10
71 19 0.10
72 3 0.02
73 69 0.37
74 79 0.42
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (73 bp):
TAAAATCTGTTTTGGGATTGATTCTTGCCGTTCAACGATTTTATTCCAAATTTTTTTTATTTCCA
AAAATGAG
Found at i:87805977 original size:147 final size:144
Alignment explanation
Indices: 87805727--87806014 Score: 377
Period size: 147 Copynumber: 2.0 Consensus size: 144
87805717 ATTAAAGGTA
*
87805727 AATAAAATGTGTTTCGGAATTGATTCTCACGTTCAACGATTTTATTCCAATTTTTTTATTTCCAA
1 AATAAAATCTGTTTCGGAATTGATTCTCACGTTCAACGATTTTATTCCAATTTTTTTATTTCCAA
* * *
87805792 AAATGAGTAAAATCTGCTTCGAGATTGATTTTTGCCGTTCAACGATTTTA-TTCTAAATTTT-TT
66 AAACGAGTAAAATCTGCTTCGAGATTGATTCTTGCCGTTCAACAATTTTATTTC-AAATTTTGTT
87805855 TTATTTCCAAAAATG
130 TTATTTCCAAAAATG
87805870 AATAAAATCTGTTTCTGG-ATTGATTCCTGC-CGTTCAACGATTTTATTCCAAATTTTGTTTTAT
1 AATAAAATCTGTTTC-GGAATTGATT-CT-CACGTTCAACGATTTTATTCC-AA-TTT-TTTTAT
** * * * * * *
87805933 TTCCGTAAACGAGTAAAATTTGTTTTGGGATTTATTCTTGCCGTTCAATAATTTTATTTCAAATT
60 TTCCAAAAACGAGTAAAATCTGCTTCGAGATTGATTCTTGCCGTTCAACAATTTTATTTCAAATT
87805998 TTGTTTTATTTCCAAAA
125 TTGTTTTATTTCCAAAA
87806015 CTGAGTATTT
Statistics
Matches: 125, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
143 21 0.17
144 23 0.18
145 3 0.02
146 3 0.02
147 58 0.46
148 17 0.14
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.45
Consensus pattern (144 bp):
AATAAAATCTGTTTCGGAATTGATTCTCACGTTCAACGATTTTATTCCAATTTTTTTATTTCCAA
AAACGAGTAAAATCTGCTTCGAGATTGATTCTTGCCGTTCAACAATTTTATTTCAAATTTTGTTT
TATTTCCAAAAATG
Found at i:87806284 original size:84 final size:84
Alignment explanation
Indices: 87806114--87806335 Score: 308
Period size: 84 Copynumber: 2.7 Consensus size: 84
87806104 AAGAAATTAA
* * *
87806114 AAATTAAATAAAATATATTTCGGGATTTATTCCTG-TCATTTAACAAGA--TTATTTTATTTTAT
1 AAATTAAATAAAATATGTTTCGGGATTTATTCCTGCT-GTTTAACAAGATTTTATTTGATTTTAT
*
87806176 TTTGTTTCCAAATTAGAATG
65 TTTGTTTCCAAATTAGAATC
* * * *
87806196 AAATTAAATAAAATCTGTTTCTGGATTTATTCTTGCTGTTTAATAAGATTTTATTTGATTTTATT
1 AAATTAAATAAAATATGTTTCGGGATTTATTCCTGCTGTTTAACAAGATTTTATTTGATTTTATT
87806261 TTGTTTCCAAATTAGAATC
66 TTGTTTCCAAATTAGAATC
* *
87806280 AAATTAAATAAAAAAATGTTTCGGGATTTATTCCCGCTGTTTAACAAG-TTTTATTT
1 AAATTAAAT-AAAATATGTTTCGGGATTTATTCCTGCTGTTTAACAAGATTTTATTT
87806336 TGATATAATT
Statistics
Matches: 122, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
82 40 0.33
83 1 0.01
84 49 0.40
85 32 0.26
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (84 bp):
AAATTAAATAAAATATGTTTCGGGATTTATTCCTGCTGTTTAACAAGATTTTATTTGATTTTATT
TTGTTTCCAAATTAGAATC
Found at i:87810004 original size:18 final size:19
Alignment explanation
Indices: 87809981--87810021 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
87809971 TATTTTAAAG
87809981 TTTATAG-T-TTAATTTTAT
1 TTTATAGCTATTAATTTT-T
87809999 TTTATAGCTATTAATTTTT
1 TTTATAGCTATTAATTTTT
87810018 TTTA
1 TTTA
87810022 AGATATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.33
19 6 0.29
20 8 0.38
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTATAGCTATTAATTTTT
Found at i:87810028 original size:18 final size:20
Alignment explanation
Indices: 87809981--87810029 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 20
87809971 TATTTTAAAG
87809981 TTTATAG-T-TTAATTTTAT
1 TTTATAGATATTAATTTTAT
*
87809999 TTTATAGCTATTAATTTT-T
1 TTTATAGATATTAATTTTAT
87810018 TTTA-AGATATTA
1 TTTATAGATATTA
87810030 TAGTTATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 14 0.50
19 6 0.21
20 8 0.29
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (20 bp):
TTTATAGATATTAATTTTAT
Found at i:87813045 original size:42 final size:42
Alignment explanation
Indices: 87812972--87813055 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
87812962 CAGTGATAGA
*
87812972 AAAAGGCAACGTCCATTCAATTGATCATTGTAGAGGTGCTAC
1 AAAAGGCAACGTCCATTCAATTAATCATTGTAGAGGTGCTAC
* * **
87813014 AAAAGGCAACGTCCGTTCGATTAATTGTTGTAGAGGTGCTAC
1 AAAAGGCAACGTCCATTCAATTAATCATTGTAGAGGTGCTAC
87813056 TACTTTGATC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (42 bp):
AAAAGGCAACGTCCATTCAATTAATCATTGTAGAGGTGCTAC
Found at i:87813448 original size:22 final size:22
Alignment explanation
Indices: 87813396--87813450 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
87813386 TATATTGTCA
* **
87813396 TATGTATTTTTATATACATTTT
1 TATGTATATTTATATACATAAT
* * *
87813418 TACGGATATTTATATATATAAT
1 TATGTATATTTATATACATAAT
87813440 TATGTATATTT
1 TATGTATATTT
87813451 TTCACATATA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (22 bp):
TATGTATATTTATATACATAAT
Found at i:87813557 original size:32 final size:32
Alignment explanation
Indices: 87813517--87813590 Score: 125
Period size: 32 Copynumber: 2.3 Consensus size: 32
87813507 AATTTTTATC
87813517 AAAC-ATTATTAAAATTGTTT-AAAACTAAAAA
1 AAACTATTATTAAAATT-TTTAAAAACTAAAAA
87813548 AAACTATTATTAAAATTTTTAAAAACTAAAAA
1 AAACTATTATTAAAATTTTTAAAAACTAAAAA
87813580 AAACTATTATT
1 AAACTATTATT
87813591 TGTATAATTG
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
31 7 0.17
32 34 0.83
ACGTcount: A:0.57, C:0.07, G:0.01, T:0.35
Consensus pattern (32 bp):
AAACTATTATTAAAATTTTTAAAAACTAAAAA
Found at i:87821000 original size:20 final size:19
Alignment explanation
Indices: 87820960--87821001 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
87820950 CAAACACCAG
* *
87820960 AAAAGTAAATTATTTCTAA
1 AAAAGTAAATCATTTCCAA
87820979 AAAAGTAAATCATTTTCCAA
1 AAAAGTAAATCA-TTTCCAA
87820999 AAA
1 AAA
87821002 TTATTTCCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.31
Consensus pattern (19 bp):
AAAAGTAAATCATTTCCAA
Found at i:87826730 original size:26 final size:26
Alignment explanation
Indices: 87826655--87826730 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
87826645 TTTTAAAAAC
* **
87826655 AAAAGAAAATATATATTATAAAAAGGT
1 AAAAGTAAATATATATTA-AAAAATAT
*
87826682 ACAAGTAAA-ATATATTAAAAAATAT
1 AAAAGTAAATATATATTAAAAAATAT
*
87826707 AAAATTAAATATATATTAAAAAAT
1 AAAAGTAAATATATATTAAAAAAT
87826731 TTTAAAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
25 13 0.31
26 22 0.52
27 7 0.17
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.29
Consensus pattern (26 bp):
AAAAGTAAATATATATTAAAAAATAT
Found at i:87835221 original size:65 final size:65
Alignment explanation
Indices: 87835117--87835241 Score: 171
Period size: 65 Copynumber: 1.9 Consensus size: 65
87835107 TTTGAGACAT
*
87835117 TAAACATATAGATAAACAATAAAGTAAAATTTGATCTTATGATCTC-AAGACACATTCATGTTGT
1 TAAACATATAAATAAACAATAAAGTAAAATTTGATCTTATGATCTCGAA-ACACATTCATGTTGT
87835181 C
65 C
* ** ** *
87835182 TAAACATATAAATAAACAATAAGGTAATTTTTTTTCTTATGGTCTCGAAACACATTCATG
1 TAAACATATAAATAAACAATAAAGTAAAATTTGATCTTATGATCTCGAAACACATTCATG
87835242 CTATCTCTAG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
65 50 0.96
66 2 0.04
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (65 bp):
TAAACATATAAATAAACAATAAAGTAAAATTTGATCTTATGATCTCGAAACACATTCATGTTGTC
Found at i:87836119 original size:14 final size:14
Alignment explanation
Indices: 87836100--87836128 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
87836090 CTTCCATTTC
87836100 ACTATTATGTTGTT
1 ACTATTATGTTGTT
87836114 ACTATTATGTTGTT
1 ACTATTATGTTGTT
87836128 A
1 A
87836129 TTGTTTGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.07, G:0.14, T:0.55
Consensus pattern (14 bp):
ACTATTATGTTGTT
Found at i:87848996 original size:26 final size:24
Alignment explanation
Indices: 87848953--87849003 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 24
87848943 TTTTAATGTC
87848953 TAAAAATATAATATTTTTATTAAAAA
1 TAAAAATATAATA-TTTT-TTAAAAA
*
87848979 TAAAAATTTAACTA-TTTTTAAAAA
1 TAAAAATATAA-TATTTTTTAAAAA
87849003 T
1 T
87849004 TAGTTTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 8 0.35
25 3 0.13
26 10 0.43
27 2 0.09
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
TAAAAATATAATATTTTTTAAAAA
Found at i:87849522 original size:10 final size:10
Alignment explanation
Indices: 87849507--87849536 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
87849497 AATCGCCTCG
87849507 TATGCTTTTA
1 TATGCTTTTA
87849517 TATGCTTTTA
1 TATGCTTTTA
87849527 TATGCTTTTA
1 TATGCTTTTA
87849537 AACCTCGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (10 bp):
TATGCTTTTA
Found at i:87853379 original size:6 final size:6
Alignment explanation
Indices: 87853368--87853396 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
87853358 ATAAATGAAT
87853368 TAAATA TAAATA TAAATA TAAATA TAAAT
1 TAAATA TAAATA TAAATA TAAATA TAAAT
87853397 TGTTTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
TAAATA
Found at i:87854622 original size:2 final size:2
Alignment explanation
Indices: 87854617--87854649 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
87854607 CATAACCCCC
*
87854617 CT CT CT CT CT CT CT CT CT CT CA CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
87854650 AAAGCTTGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.03, C:0.52, G:0.00, T:0.45
Consensus pattern (2 bp):
CT
Found at i:87857375 original size:16 final size:18
Alignment explanation
Indices: 87857337--87857376 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
87857327 AGTCTCGCTC
*
87857337 ATATTATTTTTATATAAA
1 ATATAATTTTTATATAAA
87857355 A-ATAATTTTTA-A-AAA
1 ATATAATTTTTATATAAA
87857370 ATATAAT
1 ATATAAT
87857377 ACATCAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
15 4 0.20
16 6 0.30
17 9 0.45
18 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATAATTTTTATATAAA
Found at i:87878216 original size:49 final size:49
Alignment explanation
Indices: 87878144--87878274 Score: 158
Period size: 49 Copynumber: 2.7 Consensus size: 49
87878134 ACATCAAAGT
* * * *
87878144 CGATACCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCGAG-GC
1 CGATGCCATGTTCCAGACAGGTCTTACACTGACTCTCATATATC-AGTGC
* * * *
87878193 CGATGCCATGTTCCAGATAGGTCTTACACTGGCTCTCATCTATCAGTGT
1 CGATGCCATGTTCCAGACAGGTCTTACACTGACTCTCATATATCAGTGC
87878242 CGATGCCATG-TCCTAGACAGGTCTTACACTGAC
1 CGATGCCATGTTCC-AGACAGGTCTTACACTGAC
87878275 ACACAACAGG
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 5 0.07
49 65 0.93
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTTCCAGACAGGTCTTACACTGACTCTCATATATCAGTGC
Found at i:87878367 original size:48 final size:48
Alignment explanation
Indices: 87878292--87878505 Score: 197
Period size: 46 Copynumber: 4.5 Consensus size: 48
87878282 AGGCTGACGC
* * * *
87878292 CATGTCCCAGACAGGTCTTGCACTAGCTTGTATATCTCGAGGCCTATG
1 CATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * ** * * *
87878340 CATTTCCCAAACATGTCTTACACTAGC-TCT-CGTCTCAATGCTGATG
1 CATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * *
87878386 CATGTCCCAAACATGTCTTACATTGGCTTGTATATCTCGAGACCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
** * * *
87878434 CATGTCCCGGACATGTCTTACACTGGCTCTGGTA-A--T-GTGGCCGATA
1 CATGTCCCAAACATGTCTTACACTAGCT-T-GTATATCTCGAGGCCGATG
87878480 CATGTCCCAAACATGTCTTACACTAG
1 CATGTCCCAAACATGTCTTACACTAG
87878506 GACACATATC
Statistics
Matches: 132, Mismatches: 30, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
46 64 0.48
47 5 0.04
48 58 0.44
49 2 0.02
50 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
CATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:87878421 original size:94 final size:93
Alignment explanation
Indices: 87878292--87878505 Score: 252
Period size: 94 Copynumber: 2.3 Consensus size: 93
87878282 AGGCTGACGC
* * * * * *
87878292 CATGTCCCAGACAGGTCTTGCACTAGCTTGTATATCTCGAGGCCTATGCATTTCCCAAACATGTC
1 CATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGACCGATGCATGTCCCAAACATGTC
* *
87878357 TTACACTAGCTCTCGTCTCAA-T-GCTGATG
66 TTACACTAGCTCT-G-CT-AAGTGGCCGATA
* * **
87878386 CATGTCCCAAACATGTCTTACATTGGCTTGTATATCTCGAGACCGATGCATGTCCCGGACATGTC
1 CATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGACCGATGCATGTCCCAAACATGTC
* *
87878451 TTACACTGGCTCTGGTAATGTGGCCGATA
66 TTACACTAGCTCTGCTAA-GTGGCCGATA
87878480 CATGTCCCAAACATGTCTTACACTAG
1 CATGTCCCAAACATGTCTTACACTAG
87878506 GACACATATC
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 2 0.02
94 96 0.95
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (93 bp):
CATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGACCGATGCATGTCCCAAACATGTC
TTACACTAGCTCTGCTAAGTGGCCGATA
Found at i:87882666 original size:130 final size:130
Alignment explanation
Indices: 87882433--87882699 Score: 417
Period size: 130 Copynumber: 2.1 Consensus size: 130
87882423 CATGCCTACT
* * * *
87882433 TCTATTTATAATTTATCTTAATTCTAATACTTAAAATAGAAAAAATAAATTCATTTAATCACGTT
1 TCTATTTATAATTTATCTCAATTCTAATACTTAAAATAGAAAAAAGAAATGCATTTAATCACATT
* * * *
87882498 CAAATACCCGTCCTTCTAATTTTTTCAATAATAATAGTGCAAATTGAGCTAAACCTGAATCAACA
66 CAAATACCCATCCTTCAAATGTTTTCAATAATAATAGTGCAAATTAAGCTAAACCTGAATCAACA
87882563 TCTATTTATAATTTATCTCAATTCTAATACTTAAAATAGAAAAAAGAAATGCATTTAATCACATT
1 TCTATTTATAATTTATCTCAATTCTAATACTTAAAATAGAAAAAAGAAATGCATTTAATCACATT
* * * **
87882628 CAAATACCCATCCTTCAAATGTTTTCAATAATAATAGTGCTAATTAAGCTAAATCTTAATCGGCA
66 CAAATACCCATCCTTCAAATGTTTTCAATAATAATAGTGCAAATTAAGCTAAACCTGAATCAACA
87882693 TCTATTT
1 TCTATTT
87882700 GATTTTTTTT
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
130 124 1.00
ACGTcount: A:0.40, C:0.16, G:0.06, T:0.37
Consensus pattern (130 bp):
TCTATTTATAATTTATCTCAATTCTAATACTTAAAATAGAAAAAAGAAATGCATTTAATCACATT
CAAATACCCATCCTTCAAATGTTTTCAATAATAATAGTGCAAATTAAGCTAAACCTGAATCAACA
Found at i:87897979 original size:17 final size:18
Alignment explanation
Indices: 87897945--87897980 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
87897935 TGAATTTCTA
87897945 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
87897963 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
87897980 T
1 T
87897981 TACTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:87898647 original size:15 final size:13
Alignment explanation
Indices: 87898600--87898648 Score: 59
Period size: 12 Copynumber: 3.8 Consensus size: 13
87898590 ATTTATTCAT
87898600 TAATATAATAATA
1 TAATATAATAATA
87898613 TAATATCAATTAAT-
1 TAATAT-AA-TAATA
87898627 TAA-ATAATAATA
1 TAATATAATAATA
87898639 -AATATAATAA
1 TAATATAATAA
87898649 ATATCTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
11 6 0.19
12 9 0.28
13 8 0.25
14 5 0.16
15 4 0.12
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
TAATATAATAATA
Found at i:87899198 original size:23 final size:24
Alignment explanation
Indices: 87899168--87899226 Score: 72
Period size: 23 Copynumber: 2.5 Consensus size: 24
87899158 TTTATTCCCT
87899168 TTAATATAATATCT-TAA-TTTTAA
1 TTAATATAATAT-TATAAGTTTTAA
87899191 TTAATATAAT-TTATAATGTTTTAA
1 TTAATATAATATTATAA-GTTTTAA
87899215 TTAA-ATAATATT
1 TTAATATAATATT
87899227 TTTATAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 1 0.03
22 4 0.12
23 15 0.47
24 12 0.38
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (24 bp):
TTAATATAATATTATAAGTTTTAA
Found at i:87903862 original size:47 final size:48
Alignment explanation
Indices: 87903793--87904012 Score: 201
Period size: 47 Copynumber: 4.7 Consensus size: 48
87903783 AGATGCTGAT
*
87903793 GCCATGTCCCAGACACGGTCTTACACTGGCTCAT-ATCTCAAGTCGAA
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCGAA
* *
87903840 GCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAG-CTG-A
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGTC-GAA
* * * *
87903887 -CACATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCGAGGCCAA
1 GC-CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCGAA
* * *
87903933 TG-CATGTCCCAGATAT-GTCTTACACTAG--CATTCATCTCAATGTCGAT
1 -GCCATGTCCCAGACATGGTCTTACACTGGCTCA-TCATCTCAA-GTCGAA
* *
87903980 GCCATGTCCCAAACATGGTCTTACACTAGCTCA
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCA
87904013 CACAAATGAC
Statistics
Matches: 142, Mismatches: 15, Indels: 29
0.76 0.08 0.16
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 56 0.39
47 66 0.46
48 15 0.11
50 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCGAA
Found at i:87903986 original size:93 final size:91
Alignment explanation
Indices: 87903790--87904014 Score: 233
Period size: 93 Copynumber: 2.4 Consensus size: 91
87903780 GTAAGATGCT
* * * *
87903790 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCATATCTCAAGTCGAAGCCATGTCCCAGACA
1 GATGCCATGTCCCAGACA-TGTCTTACACTGGCTCACATCTCAAGGCCAAGCCATGTCCCAGACA
87903855 TGGTCTTACACTGACTATCATCTCGTA
65 TGGTCTTACACTGACTATCATCTCGTA
* * *
87903882 GCTGACACATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCAATG-CATGTCCCAGA
1 GATG-C-CATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGGCCAA-GCCATGTCCCAGA
* *
87903946 TAT-GTCTTACACT-AGC-ATTCATCTCAATGTC
63 CATGGTCTTACACTGA-CTA-TCATCTC---GTA
* *
87903977 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACA
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACA
87904015 CAAATGACCC
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
91 2 0.02
92 21 0.19
93 52 0.47
94 31 0.28
95 5 0.05
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (91 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGGCCAAGCCATGTCCCAGACAT
GGTCTTACACTGACTATCATCTCGTA
Found at i:87911322 original size:47 final size:45
Alignment explanation
Indices: 87911251--87911468 Score: 183
Period size: 47 Copynumber: 4.6 Consensus size: 45
87911241 GGTAAGGTGT
* *
87911251 CGATGCCATGTCCCAGACACGGTCTTACACTGGCTCATATCT-TAAGT
1 CGATG-CATGTCCCAGACA-TGTCTTACACTGGCT-ATATCTCTAAGC
* * *
87911298 CGAAGCCATGTCCCAGACATGGTCTTACATTGACTATCATCTCGT-AGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTAT-ATCTC-TAAGC
* * * *
87911346 CGACGCATGTCCCAGACATGTTTTACACTGGCTTATATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TATATCTCTAAGC
* *
87911392 CGATGCATGTCCCAGACATGTCTTACACTAGC-A-CTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTATATC-TCT-AA-GC
*
87911438 CGATGTCATGTCCTAGACATGGTCTTACACT
1 CGATG-CATGTCCCAGACAT-GTCTTACACT
87911469 AACTCACACA
Statistics
Matches: 142, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
43 2 0.01
44 3 0.02
45 1 0.01
46 55 0.39
47 64 0.45
48 16 0.11
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTATATCTCTAAGC
Found at i:87911394 original size:46 final size:45
Alignment explanation
Indices: 87911257--87911420 Score: 177
Period size: 46 Copynumber: 3.5 Consensus size: 45
87911247 GTGTCGATGC
* * ** *
87911257 CATGTCCCAGACACGGTCTTACACTGGCTCATATCTTAAGTCGAAG
1 CATGTCCCAGACA-TGTCTTACACTGGCTTATATCTCGAGCCGAAG
* * *
87911303 CCATGTCCCAGACATGGTCTTACATTGAC-TATCATCTCGTAGCCGACG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTAT-ATCTCG-AGCCGAAG
* *
87911351 CATGTCCCAGACATGTTTTACACTGGCTTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTATATCTCGA-GCCGAAG
87911397 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
87911421 AGCACTCGTC
Statistics
Matches: 99, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 47 0.47
47 45 0.45
48 6 0.06
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTTATATCTCGAGCCGAAG
Found at i:87911448 original size:93 final size:92
Alignment explanation
Indices: 87911251--87911468 Score: 219
Period size: 93 Copynumber: 2.3 Consensus size: 92
87911241 GGTAAGGTGT
* * *
87911251 CGATGCCATGTCCCAGACACGGTCTTACACTGGCTCATATCTTAAGTCGAAGCCATGTCCCAGAC
1 CGATG-CATGTCCCAGACA-TGTCTTACACTGGCTCATATCTGAAGCCGAAGCCATGTCCCAGAC
* *
87911316 ATGGTCTTACATTGACTATCATCTCGTAGC
64 ATGGTCTTACATAGAC-ATCATCTCATAGC
* * * * *
87911346 CGACGCATGTCCCAGACATGTTTTACACTGGCTTATATCTCGAGGCCGATG-CATGTCCCAGACA
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCATATCT-GAAGCCGAAGCCATGTCCCAGACA
*
87911410 T-GTCTTACACTAG-CACTCGTCTCA-ATGC
65 TGGTCTTACA-TAGACA-TCATCTCATA-GC
*
87911438 CGATGTCATGTCCTAGACATGGTCTTACACT
1 CGATG-CATGTCCCAGACAT-GTCTTACACT
87911469 AACTCACACA
Statistics
Matches: 103, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
91 2 0.02
92 21 0.20
93 48 0.47
94 28 0.27
95 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCATATCTGAAGCCGAAGCCATGTCCCAGACAT
GGTCTTACATAGACATCATCTCATAGC
Found at i:87914050 original size:25 final size:24
Alignment explanation
Indices: 87913972--87914050 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 24
87913962 CTTTTTTATG
*
87913972 ATTATTATTTTAATAATTTAATCGTTAA
1 ATTATTATATT-A-AATTTAAT-G-TAA
**
87914000 ATT-TTATATTTTATTT-ATGTAA
1 ATTATTATATTAAATTTAATGTAA
87914022 ATTATGTATATTAAATTTAATGTAA
1 ATTAT-TATATTAAATTTAATGTAA
87914047 ATTA
1 ATTA
87914051 AAAAAATTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
22 6 0.14
23 2 0.05
24 12 0.28
25 14 0.33
27 6 0.14
28 3 0.07
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.54
Consensus pattern (24 bp):
ATTATTATATTAAATTTAATGTAA
Found at i:87915212 original size:29 final size:30
Alignment explanation
Indices: 87915165--87915223 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
87915155 GAATTGGATC
* *
87915165 AAATCAAAATTTCAAGTATAAAATTGCACA
1 AAATCAAAAGTTCAAGTATAAAATTACACA
* *
87915195 AAATC-AAAGTTCATGTATACAATTACACA
1 AAATCAAAAGTTCAAGTATAAAATTACACA
87915224 TTAAACCATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.27
Consensus pattern (30 bp):
AAATCAAAAGTTCAAGTATAAAATTACACA
Found at i:87916447 original size:59 final size:59
Alignment explanation
Indices: 87916355--87916493 Score: 224
Period size: 59 Copynumber: 2.4 Consensus size: 59
87916345 TGTTGTTGTT
* *
87916355 TACAAATTACTTAACACTTGGTATACATGGCTGCTGGTTAGAAAAGATAACAATTGATA
1 TACAAATTACTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAATTGATA
* * *
87916414 TACAAATTTCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAGTTGGTA
1 TACAAATTACTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAATTGATA
*
87916473 TACAAATTGCTTAACAGTTGG
1 TACAAATTACTTAACAGTTGG
87916494 ATAACAAATA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
59 74 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (59 bp):
TACAAATTACTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAATTGATA
Found at i:87916955 original size:21 final size:21
Alignment explanation
Indices: 87916922--87916970 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
87916912 GTTGGGGCAC
* *
87916922 CTTGTTGAGTTGGGGTACCCT
1 CTTGCTGACTTGGGGTACCCT
*
87916943 CTTGCTGACTTGGGGTAGCCT
1 CTTGCTGACTTGGGGTACCCT
*
87916964 GTTGCTG
1 CTTGCTG
87916971 GGTCTAACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.08, C:0.20, G:0.35, T:0.37
Consensus pattern (21 bp):
CTTGCTGACTTGGGGTACCCT
Found at i:87917788 original size:42 final size:43
Alignment explanation
Indices: 87917627--87917804 Score: 240
Period size: 43 Copynumber: 4.2 Consensus size: 43
87917617 TAAAAAAAAC
* * *
87917627 TCATTGCATGCATACTAAAAAATAAG-CAACA-C--ACTAACAA
1 TCATTGCATGCATATTAAAAAAT-AGTCAACAGCTTTCCAACAA
87917667 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
*
87917710 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
* * *
87917753 TCATTGCATACGTATTAAAAAA-AGTCAATAGCTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
*
87917795 TCAGTGCATG
1 TCATTGCATG
87917805 TGATCAGCAA
Statistics
Matches: 124, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.02
40 27 0.22
41 1 0.01
42 26 0.21
43 68 0.55
ACGTcount: A:0.43, C:0.21, G:0.10, T:0.26
Consensus pattern (43 bp):
TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
Found at i:87917803 original size:85 final size:83
Alignment explanation
Indices: 87917631--87917804 Score: 237
Period size: 85 Copynumber: 2.1 Consensus size: 83
87917621 AAAAACTCAT
*
87917631 TGCATGCATACTAAAAAATAAGCAACACACTAACAATCATTGCATGCATATTAAAAAATAGTCAA
1 TGCATGCATACTAAAAAATAAGCAACACACTAACAATCATTGCATACATATTAAAAAATAGTCAA
*
87917696 CAGCTTTCCAACAATCAT
66 CAGCTTTCCAACAATCAG
* *
87917714 TGCATGCATATTAAAAAAT-AGTCAACA-ACTTTCCAACAATCATTGCATACGTATTAAAAAA-A
1 TGCATGCATACTAAAAAATAAG-CAACACAC--T--AACAATCATTGCATACATATTAAAAAATA
*
87917776 GTCAATAGCTTTCCAACAATCAG
61 GTCAACAGCTTTCCAACAATCAG
87917799 TGCATG
1 TGCATG
87917805 TGATCAGCAA
Statistics
Matches: 81, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
82 4 0.05
83 23 0.28
84 1 0.01
85 28 0.35
86 25 0.31
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.26
Consensus pattern (83 bp):
TGCATGCATACTAAAAAATAAGCAACACACTAACAATCATTGCATACATATTAAAAAATAGTCAA
CAGCTTTCCAACAATCAG
Found at i:87919466 original size:15 final size:15
Alignment explanation
Indices: 87919446--87919474 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
87919436 ATGCATCACT
87919446 ATCACTACCAGACAC
1 ATCACTACCAGACAC
87919461 ATCACTACCAGACA
1 ATCACTACCAGACA
87919475 TATTTTCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.38, G:0.07, T:0.14
Consensus pattern (15 bp):
ATCACTACCAGACAC
Found at i:87919892 original size:48 final size:47
Alignment explanation
Indices: 87919779--87919947 Score: 230
Period size: 48 Copynumber: 3.6 Consensus size: 47
87919769 AATAAACATC
*
87919779 ATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATACA
1 ATGGCAGATATACACAATAAACATCAATTTGATAATGCATTCATACA
* * ** *
87919826 ATAGCAAATATATGCAATACACATCAATTTGATAATGACATTCATACA
1 ATGGCAGATATACACAATAAACATCAATTTGATAATG-CATTCATACA
87919874 ATGGCAGATATACACAATAAACATCAATTTGATAATGGCATTCATACA
1 ATGGCAGATATACACAATAAACATCAATTTGATAAT-GCATTCATACA
* * * *
87919922 ATGACAGAAACAAACAATAAACATCA
1 ATGGCAGATATACACAATAAACATCA
87919948 TGCACATGAC
Statistics
Matches: 105, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
47 31 0.30
48 73 0.70
49 1 0.01
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.25
Consensus pattern (47 bp):
ATGGCAGATATACACAATAAACATCAATTTGATAATGCATTCATACA
Found at i:87919995 original size:6 final size:6
Alignment explanation
Indices: 87919966--87920051 Score: 73
Period size: 6 Copynumber: 14.3 Consensus size: 6
87919956 ACATACAATA
* * * * * * *
87919966 CAAAAT CGAAAT CCAGAT CGAAAT CAAAAT CAAATT CTAAAT CTAAAT
1 CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT
* * * *
87920014 CGAGAT CAAAAT TAGAAT CAAAAT CAAAAT CAAAAT CA
1 CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CA
87920052 GTGAGTATTT
Statistics
Matches: 63, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.55, C:0.17, G:0.07, T:0.21
Consensus pattern (6 bp):
CAAAAT
Found at i:87920084 original size:12 final size:12
Alignment explanation
Indices: 87920063--87920109 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
87920053 TGAGTATTTT
*
87920063 AAAATTGAAATC
1 AAAATCGAAATC
87920075 AAAATCGAAATC
1 AAAATCGAAATC
*
87920087 AGAATCGAAA-C
1 AAAATCGAAATC
*
87920098 TAAAATTGAAAT
1 -AAAATCGAAAT
87920110 AGAAATAACC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 1 0.03
12 28 0.97
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.21
Consensus pattern (12 bp):
AAAATCGAAATC
Found at i:87931766 original size:20 final size:20
Alignment explanation
Indices: 87931741--87931784 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
87931731 AAGAAATGGA
*
87931741 AAATGGGAAAATGAGAT-GTG
1 AAAT-GGAAAATGAAATGGTG
*
87931761 AAATGGAATATGAAATGGTG
1 AAATGGAAAATGAAATGGTG
87931781 AAAT
1 AAAT
87931785 CTATTGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.23
Consensus pattern (20 bp):
AAATGGAAAATGAAATGGTG
Found at i:87936948 original size:40 final size:40
Alignment explanation
Indices: 87936872--87936971 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 40
87936862 AATGATATTT
* * ** *
87936872 GACTATGACTGGCACTAAGTGTGCGGTTTAATATAGCTTC
1 GACTATAAATGGCACTAAGTGTGCGAATTAACATAGCTTC
**
87936912 GACTATAAATGGCACTAAGTGTGCGAATTGGCATAGCTTC
1 GACTATAAATGGCACTAAGTGTGCGAATTAACATAGCTTC
87936952 -AGCTATAGAA-GGCACTAAGT
1 GA-CTATA-AATGGCACTAAGT
87936972 CTGCAATACC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
39 1 0.02
40 48 0.94
41 2 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (40 bp):
GACTATAAATGGCACTAAGTGTGCGAATTAACATAGCTTC
Found at i:87938867 original size:21 final size:21
Alignment explanation
Indices: 87938843--87938885 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
87938833 GTAGTAGTTG
*
87938843 TGTTTGGTAAAAGGATTAGAC
1 TGTTTGGTAAAAAGATTAGAC
87938864 TGTTTGGTAAAAAGATTAGAC
1 TGTTTGGTAAAAAGATTAGAC
87938885 T
1 T
87938886 TCAAATCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.35
Consensus pattern (21 bp):
TGTTTGGTAAAAAGATTAGAC
Found at i:87941199 original size:13 final size:13
Alignment explanation
Indices: 87941183--87941207 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87941173 TTAAATCAGT
87941183 TAATTAGTTTAAA
1 TAATTAGTTTAAA
87941196 TAATTAGTTTAA
1 TAATTAGTTTAA
87941208 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:87946619 original size:17 final size:16
Alignment explanation
Indices: 87946595--87946641 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
87946585 TTTAGTCTTA
87946595 TTTTATTTTTATTTTC
1 TTTTATTTTTATTTTC
87946611 TTTTGATTTTTATTTTC
1 TTTT-ATTTTTATTTTC
* *
87946628 ATTTCAATTTTATT
1 -TTTTATTTTTATT
87946642 ATTTTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 4 0.15
17 20 0.74
18 3 0.11
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTTATTTTTATTTTC
Found at i:87949511 original size:13 final size:13
Alignment explanation
Indices: 87949495--87949519 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87949485 TTAAATCAGT
87949495 TAATTAGTTTAAA
1 TAATTAGTTTAAA
87949508 TAATTAGTTTAA
1 TAATTAGTTTAA
87949520 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:87958528 original size:40 final size:40
Alignment explanation
Indices: 87958434--87958658 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 40
87958424 TATTCGAATG
*
87958434 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
87958475 ATAAT-TGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 AT-ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TGACT
* *
87958515 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
** *
87958555 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
87958595 ATATCTGGACTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
87958635 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
87958659 CTTGTGCAAG
Statistics
Matches: 153, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
39 4 0.03
40 120 0.78
41 26 0.17
42 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:87958619 original size:80 final size:80
Alignment explanation
Indices: 87958434--87958658 Score: 274
Period size: 80 Copynumber: 2.8 Consensus size: 80
87958424 TATTCGAATG
* * * *
87958434 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAAT-TGGACTAAGATCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTAT-ATCCGGGCTAAGACCCGAAGG
*
87958498 CATTCGTGCGAGTTGCT
64 CATTCGTGCGAGTCGCT
* * *
87958515 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
87958580 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
87958595 ATATCTGGACTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
87958659 CTTGTGCAAG
Statistics
Matches: 124, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
79 3 0.02
80 88 0.71
81 33 0.27
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:87958648 original size:120 final size:121
Alignment explanation
Indices: 87958434--87958658 Score: 305
Period size: 120 Copynumber: 1.9 Consensus size: 121
87958424 TATTCGAATG
** * *
87958434 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAATTGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAATTGGACTAAGATCCGAAGGC
* * * *
87958499 ATTCGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
87958555 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTAT-ATCTGGACTAAG-TCCCGAAG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAAT-TGGACTAAGAT-CCGAAG
* *
87958617 GCATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
64 GCATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
87958659 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
119 5 0.05
120 55 0.60
121 31 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAATTGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:87966692 original size:40 final size:42
Alignment explanation
Indices: 87966598--87966858 Score: 235
Period size: 40 Copynumber: 6.5 Consensus size: 42
87966588 TATTCGAATG
* *
87966598 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTTGACT
* * * * *
87966639 ATAACTGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTTGACT
* **
87966679 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-CGTTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTTGACT
* *
87966719 ATATCCGGGCTAA-AACCCGAAGGCATTTGTGCTAG-CGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTTGACT
* * * *
87966759 ATATCTGGACTAAG-TCCCGAAGGCATTTATGCTAG-TGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTTGACT
* * * * *
87966799 ACATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGTAG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTTGACT
87966838 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
87966859 ATTACTTGAG
Statistics
Matches: 179, Mismatches: 33, Indels: 19
0.77 0.14 0.08
Matches are distributed among these distances:
37 1 0.01
38 13 0.07
39 14 0.08
40 121 0.68
41 29 0.16
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (42 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTTGACT
Found at i:87966783 original size:80 final size:79
Alignment explanation
Indices: 87966598--87966858 Score: 267
Period size: 80 Copynumber: 3.3 Consensus size: 79
87966588 TATTCGAATG
* * * * *
87966598 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACTGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGGT--CTATATCCGGGCTAAGACCCGAAGGC
*
87966663 ATTCGTGCGAGTTGCT
64 ATTCGTGCGAGTCGCT
* *
87966679 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGTTTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-GTCTATATCCGGGCTAAGACCCGAAGGCA
* *
87966744 TTTGTGCTAG-CGACT
65 TTCGTGCGAGTCG-CT
* * * * * * *
87966759 ATATCTGGACTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-GTCTATATCCGGGCTAAGACCCGAAGGCA
* * *
87966824 TT-GTGCAAGTAGTT
65 TTCGTGCGAGTCGCT
*
87966838 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
87966859 ATTACTTGAG
Statistics
Matches: 151, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
78 13 0.09
79 13 0.09
80 89 0.59
81 34 0.23
82 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGGTCTATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAGTCGCT
Found at i:87966812 original size:120 final size:120
Alignment explanation
Indices: 87966598--87966858 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
87966588 TATTCGAATG
* * *
87966598 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACTGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACTGGACTAAGATCCGAAGGC
* * * * * * *
87966663 ATTCGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-CGTTT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTAG-TT
* *
87966719 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCTGGACTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACTGGACTAAGAT-CCGAAGG
* *
87966782 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
87966838 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
87966859 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 14 0.11
119 19 0.16
120 58 0.48
121 31 0.25
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACTGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
Found at i:87973823 original size:7 final size:7
Alignment explanation
Indices: 87973811--87973841 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
87973801 ATCCAAATAA
*
87973811 AATGTCT
1 AATGTCC
87973818 AATGTCC
1 AATGTCC
87973825 AATGTCC
1 AATGTCC
87973832 AATGTCC
1 AATGTCC
87973839 AAT
1 AAT
87973842 ACAACCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (7 bp):
AATGTCC
Found at i:87973902 original size:22 final size:21
Alignment explanation
Indices: 87973877--87973918 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
87973867 GGAGTTCCAC
*
87973877 AATGCCTAACTACAGTCTCTAA
1 AATGCCTAA-TAAAGTCTCTAA
*
87973899 AATGCGTAATAAAGTCTCTA
1 AATGCCTAATAAAGTCTCTA
87973919 CCAAGCTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (21 bp):
AATGCCTAATAAAGTCTCTAA
Found at i:87979198 original size:18 final size:20
Alignment explanation
Indices: 87979175--87979214 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
87979165 ATATGCATAT
87979175 AGAGG-AAGAATGAA-AGAA
1 AGAGGAAAGAATGAAGAGAA
*
87979193 AGAGGAAAGCATGAAGAGAA
1 AGAGGAAAGAATGAAGAGAA
87979213 AG
1 AG
87979215 CTATATGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 8 0.42
20 6 0.32
ACGTcount: A:0.57, C:0.03, G:0.35, T:0.05
Consensus pattern (20 bp):
AGAGGAAAGAATGAAGAGAA
Found at i:87981088 original size:38 final size:38
Alignment explanation
Indices: 87981046--87981166 Score: 163
Period size: 38 Copynumber: 3.2 Consensus size: 38
87981036 CATCGGCTCA
* *
87981046 AAGCCTACTAAGCACTAAGCCTGATTAACACCGGCA-T
1 AAGCCTGCTAAGCACTAAGCCTGAATAACACCGGCACT
*
87981083 CAAGCCTGCTAAGCACTAAGCTTGAATAACACCGGCACT
1 -AAGCCTGCTAAGCACTAAGCCTGAATAACACCGGCACT
* * * *
87981122 AAGCTTGCTAGGCACTAAGTCGGAATAACACCGGCACT
1 AAGCCTGCTAAGCACTAAGCCTGAATAACACCGGCACT
87981160 AAGCCTG
1 AAGCCTG
87981167 AATAATACCC
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 72 0.99
39 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (38 bp):
AAGCCTGCTAAGCACTAAGCCTGAATAACACCGGCACT
Found at i:87981123 original size:22 final size:22
Alignment explanation
Indices: 87981095--87981171 Score: 69
Period size: 22 Copynumber: 3.8 Consensus size: 22
87981085 AGCCTGCTAA
87981095 GCACTAAGCTTGAATAACACCG
1 GCACTAAGCTTGAATAACACCG
*
87981117 GCACTAAGCTTG-CT---A--G
1 GCACTAAGCTTGAATAACACCG
*
87981133 GCACTAAG-TCGGAATAACACCG
1 GCACTAAGCT-TGAATAACACCG
*
87981155 GCACTAAGCCTGAATAA
1 GCACTAAGCTTGAATAA
87981172 TACCCCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
15 1 0.02
16 10 0.24
17 1 0.02
18 1 0.02
20 1 0.02
21 1 0.02
22 27 0.64
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.18
Consensus pattern (22 bp):
GCACTAAGCTTGAATAACACCG
Found at i:87982825 original size:26 final size:26
Alignment explanation
Indices: 87982796--87982903 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
87982786 TGGTACAAAT
87982796 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87982822 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87982848 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87982874 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87982900 TGAT
1 TGAT
87982904 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87986253 original size:27 final size:26
Alignment explanation
Indices: 87986223--87986729 Score: 313
Period size: 27 Copynumber: 18.7 Consensus size: 26
87986213 AATTTACCAT
*
87986223 AAAGTCTTTTCTTCCATGATTCGCCAC
1 AAAGT-TTTTCTTTCATGATTCGCCAC
87986250 AAAGTCTTTTCTTTCATGATTCGCCAC
1 AAAGT-TTTTCTTTCATGATTCGCCAC
* *
87986277 AAAGGTTTTTCTTTCA-CATTTTGCCAC
1 AAA-GTTTTTCTTTCATGA-TTCGCCAC
* * *
87986304 AAAGACTTTTGTTTCAT-ATTTTGCCAC
1 AAAG-TTTTTCTTTCATGA-TTCGCCAC
*
87986331 AAAAGTTTTTCTTTCATGATTCACCAC
1 -AAAGTTTTTCTTTCATGATTCGCCAC
*
87986358 AAAGGGTTTTT-TTTCGT-ATTTCGCCAC
1 AAA--GTTTTTCTTTCATGA-TTCGCCAC
* *
87986385 AAAGGTTTTCCTTT--TGTATTTTGCCAC
1 AAA-GTTTTTCTTTCATG-A-TTCGCCAC
*
87986412 AAAGGTTTTCCTTT--TGTATTTCGCCAC
1 AAA-GTTTTTCTTTCATG-A-TTCGCCAC
*
87986439 AAAGGCTTTTCTTTCATGATTCGCCAC
1 AAA-GTTTTTCTTTCATGATTCGCCAC
*
87986466 AAAGTCTTTTTCTTTCATGATTTGCCAC
1 AAAG--TTTTTCTTTCATGATTCGCCAC
*
87986494 AAAGTCTTTTCTTTCATGATTCGTCAC
1 AAAGT-TTTTCTTTCATGATTCGCCAC
*
87986521 AAAGGTTTTTCTTTCAT-ATTTTGCCAC
1 AAA-GTTTTTCTTTCATGA-TTCGCCAC
* *
87986548 AAAAGTTTTTCTTTCATAATTCACCAC
1 -AAAGTTTTTCTTTCATGATTCGCCAC
* * *
87986575 AAAGGTTTTCTTT-TTGTATTTTGCCAC
1 AAAGTTTTTCTTTCATG-A-TTCGCCAC
*
87986602 AAAAGGTTTTCCTTT--TGTATTTCGCCAC
1 -AAA-GTTTTTCTTTCATG-A-TTCGCCAC
* * *
87986630 AAAGGTTTTCCGTT--TGTATTTTGCCAC
1 AAA-GTTTTTCTTTCATG-A-TTCGCCAC
* *
87986657 AAAGGCTTTTCTTTCATGATTCACCAC
1 AAA-GTTTTTCTTTCATGATTCGCCAC
* * ** *
87986684 AAAGGCTTTTCTTCCATGATTTACCAT
1 AAA-GTTTTTCTTTCATGATTCGCCAC
* *
87986711 AAAGCTTTTCTTTCTTGAT
1 AAAGTTTTTCTTTCATGAT
87986730 GTGTTTACGA
Statistics
Matches: 409, Mismatches: 44, Indels: 55
0.81 0.09 0.11
Matches are distributed among these distances:
25 2 0.00
26 42 0.10
27 293 0.72
28 60 0.15
29 12 0.03
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (26 bp):
AAAGTTTTTCTTTCATGATTCGCCAC
Found at i:87986266 original size:54 final size:53
Alignment explanation
Indices: 87986208--87986729 Score: 366
Period size: 54 Copynumber: 9.6 Consensus size: 53
87986198 ATGCTATCCC
* * *
87986208 TTCATAATTTACCATAAAGTCTTTTCTTCCATGATTCGCCACAAAGTCTTTTCT
1 TTCATAATTTGCCACAAAGT-TTTTCTTTCATGATTCGCCACAAAGTCTTTTCT
* * * * * *
87986262 TTCATGATTCGCCACAAAGGTTTTTCTTTCA-CATTTTGCCACAAAGACTTTTGT
1 TTCATAATTTGCCACAAA-GTTTTTCTTTCATGA-TTCGCCACAAAGTCTTTTCT
* * ** *
87986316 TTCATATTTTGCCACAAAAGTTTTTCTTTCATGATTCACCACAAAGGGTTTTTT
1 TTCATAATTTGCCAC-AAAGTTTTTCTTTCATGATTCGCCACAAAGTCTTTTCT
* * * *
87986370 TTCGT-ATTTCGCCACAAAGGTTTTCCTTT--TGTATTTTGCCACAAAGGT-TTTCCT
1 TTCATAATTT-GCCACAAA-GTTTTTCTTTCATG-A-TTCGCCACAAA-GTCTTTTCT
** *
87986424 TTTGT-ATTTCGCCACAAAGGCTTTTCTTTCATGATTCGCCACAAAGTCTTTTTCT
1 TTCATAATTT-GCCACAAA-GTTTTTCTTTCATGATTCGCCACAAAGTC-TTTTCT
* *
87986479 TTCATGATTTGCCACAAAGTCTTTTCTTTCATGATTCGTCACAAAGGT-TTTTCT
1 TTCATAATTTGCCACAAAGT-TTTTCTTTCATGATTCGCCACAAA-GTCTTTTCT
* * * *
87986533 TTCATATTTTGCCACAAAAGTTTTTCTTTCATAATTCACCACAAAG-GTTTTCTT
1 TTCATAATTTGCCAC-AAAGTTTTTCTTTCATGATTCGCCACAAAGTCTTTTC-T
** * * *
87986587 TTTGTATTTTGCCACAAAAGGTTTTCCTTT--TGTATTTCGCCACAAAGGT-TTTCCGT
1 TTCATAATTTGCCAC-AAA-GTTTTTCTTTCATG-A-TTCGCCACAAA-GTCTTTTC-T
* * * * *
87986643 TT-GTATTTTGCCACAAAGGCTTTTCTTTCATGATTCACCACAAAGGCTTTTCT
1 TTCATAATTTGCCACAAA-GTTTTTCTTTCATGATTCGCCACAAAGTCTTTTCT
* * * * * *
87986696 TCCATGATTTACCATAAAGCTTTTCTTTCTTGAT
1 TTCATAATTTGCCACAAAGTTTTTCTTTCATGAT
87986730 GTGTTTACGA
Statistics
Matches: 381, Mismatches: 59, Indels: 57
0.77 0.12 0.11
Matches are distributed among these distances:
52 2 0.01
53 35 0.09
54 242 0.64
55 84 0.22
56 18 0.05
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (53 bp):
TTCATAATTTGCCACAAAGTTTTTCTTTCATGATTCGCCACAAAGTCTTTTCT
Found at i:87986341 original size:81 final size:79
Alignment explanation
Indices: 87986223--87986724 Score: 446
Period size: 81 Copynumber: 6.2 Consensus size: 79
87986213 AATTTACCAT
* *
87986223 AAAGTCTTTTCTTCCATGA-TTCGCCACAAAGTCTTTTCTTTCATGATTCGCCACAAAGGTTTTT
1 AAAG-CTTTTCTTTCAT-ATTTTGCCACAAAGT-TTTTCTTTCATGATTCGCCACAAAGGTTTTT
* *
87986287 CTTTCACATTTTGCCAC
63 CTTTCATATTTCGCCAC
* *
87986304 AAAGACTTTTGTTTCATATTTTGCCACAAAAGTTTTTCTTTCATGATTCACCACAAAGGGTTTTT
1 AAAG-CTTTTCTTTCATATTTTGCCAC-AAAGTTTTTCTTTCATGATTCGCCACAAA-GGTTTTT
*
87986369 -TTTCGTATTTCGCCAC
63 CTTTCATATTTCGCCAC
* ** * *
87986385 AAAGGTTTTCCTTTTGTATTTTGCCACAAAGGTTTTCCTTT--TGTATTTCGCCACAAAGGCTTT
1 AAAGCTTTT-CTTTCATATTTTGCCACAAA-GTTTTTCTTTCATG-A-TTCGCCACAAAGGTTTT
87986448 TCTTTCATGA-TTCGCCAC
62 TCTTTCAT-ATTTCGCCAC
*
87986466 AAAGTCTTTTTCTTTCATGA-TTTGCCACAAAGTCTTTTCTTTCATGATTCGTCACAAAGGTTTT
1 AAAG-C-TTTTCTTTCAT-ATTTTGCCACAAAGT-TTTTCTTTCATGATTCGCCACAAAGGTTTT
*
87986530 TCTTTCATATTTTGCCAC
62 TCTTTCATATTTCGCCAC
* * ** * * *
87986548 AAAAGTTTTTCTTTCATAATTCACCACAAAGGTTTTCTTT-TTGTATTTTGCCACAAAAGGTTTT
1 -AAAGCTTTTCTTTCATATTTTGCCACAAAGTTTTTCTTTCATG-A-TTCGCCAC-AAAGGTTTT
* **
87986612 CCTTTTGTATTTCGCCAC
62 TCTTTCATATTTCGCCAC
* * * * *
87986630 AAAGGTTTTCCGTTT-GTATTTTGCCACAAAGGCTTTTCTTTCATGATTCACCACAAAGGCTTTT
1 AAAGCTTTT-C-TTTCATATTTTGCCACAAA-GTTTTTCTTTCATGATTCGCCACAAAGGTTTTT
* * *
87986694 CTTCCATGATTT-ACCAT
63 CTTTCAT-ATTTCGCCAC
87986711 AAAGCTTTTCTTTC
1 AAAGCTTTTCTTTC
87986725 TTGATGTGTT
Statistics
Matches: 343, Mismatches: 51, Indels: 55
0.76 0.11 0.12
Matches are distributed among these distances:
79 7 0.02
80 26 0.08
81 172 0.50
82 111 0.32
83 23 0.07
84 4 0.01
ACGTcount: A:0.23, C:0.22, G:0.12, T:0.43
Consensus pattern (79 bp):
AAAGCTTTTCTTTCATATTTTGCCACAAAGTTTTTCTTTCATGATTCGCCACAAAGGTTTTTCTT
TCATATTTCGCCAC
Found at i:87986577 original size:163 final size:163
Alignment explanation
Indices: 87986269--87986705 Score: 500
Period size: 163 Copynumber: 2.7 Consensus size: 163
87986259 TCTTTCATGA
* * *
87986269 TTCGCCACAAAGGTTTTTCTTTCA-CATTTTGCCACAAAGAC-TTTTGTTTCAT-ATTTTGCCAC
1 TTCGCCACAAAGG-TTTTCTTTCATGATTTCGCCACAAAG-CTTTTTCTTTCATGATTTTGCCAC
* *
87986331 AAAAGT-TTTTCTTTCATGATTCACCACAAAGGGTTTTT-TTTCGTATTTCGCCACAAAGGTTTT
64 -AAAGTCTTTTCTTTCATGATTCACCACAAA-GGTTTTTCTTTCATATTTCGCCACAAAAGTTTT
** * **
87986394 CCTTTTGTATTTTGCCACAAAGGTTTTCCTTTTGTAT
127 CCTTTCATAATTCACCACAAAGGTTTTCCTTTTGTAT
87986431 TTCGCCACAAAGGCTTTTCTTTCATGA-TTCGCCACAAAGTCTTTTTCTTTCATGA-TTTGCCAC
1 TTCGCCACAAAGG-TTTTCTTTCATGATTTCGCCACAAAG-CTTTTTCTTTCATGATTTTGCCAC
** * *
87986494 AAAGTCTTTTCTTTCATGATTCGTCACAAAGGTTTTTCTTTCATATTTTGCCACAAAAGTTTTTC
64 AAAGTCTTTTCTTTCATGATTCACCACAAAGGTTTTTCTTTCATATTTCGCCACAAAAGTTTTCC
*
87986559 TTTCATAATTCACCACAAAGGTTTTCTTTTTGTAT
129 TTTCATAATTCACCACAAAGGTTTTCCTTTTGTAT
* * * *
87986594 TTTGCCACAAAAGGTTTTCCTTT--TGTATTTCGCCACAAAGGTTTTCCGTT--TGTATTTTGCC
1 TTCGCCAC-AAAGGTTTT-CTTTCATG-ATTTCGCCACAAAGCTTTTTCTTTCATG-ATTTTGCC
* * *
87986655 ACAAAGGCTTTTCTTTCATGATTCACCACAAAGGCTTTTCTTCCATGATTT
62 ACAAAGTCTTTTCTTTCATGATTCACCACAAAGGTTTTTCTTTCAT-ATTT
87986706 ACCATAAAGC
Statistics
Matches: 237, Mismatches: 26, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
161 2 0.01
162 50 0.21
163 159 0.67
164 26 0.11
ACGTcount: A:0.22, C:0.21, G:0.13, T:0.44
Consensus pattern (163 bp):
TTCGCCACAAAGGTTTTCTTTCATGATTTCGCCACAAAGCTTTTTCTTTCATGATTTTGCCACAA
AGTCTTTTCTTTCATGATTCACCACAAAGGTTTTTCTTTCATATTTCGCCACAAAAGTTTTCCTT
TCATAATTCACCACAAAGGTTTTCCTTTTGTAT
Found at i:87988315 original size:37 final size:36
Alignment explanation
Indices: 87988265--87988348 Score: 89
Period size: 37 Copynumber: 2.3 Consensus size: 36
87988255 TTGAAAAGTC
**
87988265 TTTGTGGTGAATTCTCT-AAAAAGCCTTCGTGGAAGAT
1 TTTGTGGAAAATTCTCTGAAAAA-CCTTCGTGGAA-AT
* *
87988302 TTTGTGGAAAATTCTCTGGAAAACCTTTGTGGAAAT
1 TTTGTGGAAAATTCTCTGAAAAACCTTCGTGGAAAT
*
87988338 TTCTCTGGAAA
1 TT-TGTGGAAA
87988349 GCCTTTATGG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
36 4 0.10
37 32 0.80
38 4 0.10
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.36
Consensus pattern (36 bp):
TTTGTGGAAAATTCTCTGAAAAACCTTCGTGGAAAT
Found at i:87988331 original size:25 final size:25
Alignment explanation
Indices: 87988302--87988399 Score: 106
Period size: 25 Copynumber: 3.9 Consensus size: 25
87988292 CGTGGAAGAT
87988302 TTTGTGGAAAATTCTCTGGAAAACC
1 TTTGTGGAAAATTCTCTGGAAAACC
* *
87988327 TTTGTGGAAATTTCTCTGGAAAGCC
1 TTTGTGGAAAATTCTCTGGAAAACC
* ** * *
87988352 TTTATGGTGAATTCTCGGGAAAGCC
1 TTTGTGGAAAATTCTCTGGAAAACC
** *
87988377 TTTGTGGCTAATTCTTTGGAAAA
1 TTTGTGGAAAATTCTCTGGAAAA
87988400 TTCATATAGT
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (25 bp):
TTTGTGGAAAATTCTCTGGAAAACC
Found at i:87989312 original size:28 final size:28
Alignment explanation
Indices: 87989253--87989313 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
87989243 TGGATTGTAT
* *
87989253 ATGAAAATAGAAGCCTTTGTGGCAACAT
1 ATGAAAATAAAAGCCTTTGTGGCAACAC
* *
87989281 ATGAGAATAAAAGCC-TTGTGGCGACCAC
1 ATGAAAATAAAAGCCTTTGTGGC-AACAC
87989309 ATGAA
1 ATGAA
87989314 GAAAGTGCCT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 7 0.26
28 20 0.74
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.21
Consensus pattern (28 bp):
ATGAAAATAAAAGCCTTTGTGGCAACAC
Found at i:87991615 original size:10 final size:9
Alignment explanation
Indices: 87991589--87991618 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
87991579 TAATTAACTT
87991589 TTTAAAAAA
1 TTTAAAAAA
87991598 TTTAAAAAA
1 TTTAAAAAA
87991607 TTTAGAAAAA
1 TTTA-AAAAA
87991617 TT
1 TT
87991619 AAATATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.65
10 7 0.35
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:87991820 original size:34 final size:34
Alignment explanation
Indices: 87991777--87991844 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
87991767 AAAGAGACGA
87991777 AAAATTAAATGAATGGCTAAAATAATTTTTTTTT
1 AAAATTAAATGAATGGCTAAAATAATTTTTTTTT
87991811 AAAATTAAATGAATGGCTAAAATAATTTTTTTTT
1 AAAATTAAATGAATGGCTAAAATAATTTTTTTTT
87991845 TACTTAGAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (34 bp):
AAAATTAAATGAATGGCTAAAATAATTTTTTTTT
Found at i:88024452 original size:75 final size:76
Alignment explanation
Indices: 88024327--88024471 Score: 247
Period size: 75 Copynumber: 1.9 Consensus size: 76
88024317 CCTAAAATAT
* *
88024327 GGGTGTGTGTCTTGGCCGTGTGAACCCTACACCTCATTTTTGAAATTTAAATTGATCACACGGCC
1 GGGTGTGTGTCTTGGCCGTGTGAACCCTACACCTAATTTTTGAAAATTAAATTGATCACACGGCC
88024392 TACTCGCAATG
66 TACTCGCAATG
* *
88024403 GGGTGTGTGTCTTGGCCGTTTGAA-CCTACACCTAATTTTTGAAAATTAAATTGATCACATGGCC
1 GGGTGTGTGTCTTGGCCGTGTGAACCCTACACCTAATTTTTGAAAATTAAATTGATCACACGGCC
88024467 TACTC
66 TACTC
88024472 ACAAGGACGT
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
75 42 0.65
76 23 0.35
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (76 bp):
GGGTGTGTGTCTTGGCCGTGTGAACCCTACACCTAATTTTTGAAAATTAAATTGATCACACGGCC
TACTCGCAATG
Found at i:88032374 original size:21 final size:21
Alignment explanation
Indices: 88032350--88032404 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
88032340 GTCTTAGGGT
88032350 CACACGGGCGTGTCCCTAGAC
1 CACACGGGCGTGTCCCTAGAC
88032371 CACACGGGCGTGTCCCTAGAC
1 CACACGGGCGTGTCCCTAGAC
88032392 CACACGGGCGTGT
1 CACACGGGCGTGT
88032405 GAGCCCTGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.15
Consensus pattern (21 bp):
CACACGGGCGTGTCCCTAGAC
Found at i:88034369 original size:29 final size:30
Alignment explanation
Indices: 88034337--88034412 Score: 73
Period size: 31 Copynumber: 2.5 Consensus size: 30
88034327 CAAAAATTTG
*
88034337 TGTATAAAATTG-CATAAAATCAAAGTTCA
1 TGTATAAAATTGACATAAAACCAAAGTTCA
** * *
88034366 TGTATACGATTGCACATTAAACCAAAGTTCG
1 TGTATAAAATTG-ACATAAAACCAAAGTTCA
**
88034397 TGTATAATTTTGACAT
1 TGTATAAAATTGACAT
88034413 TTATCTTTTC
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
29 10 0.27
30 4 0.11
31 23 0.62
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (30 bp):
TGTATAAAATTGACATAAAACCAAAGTTCA
Found at i:88038807 original size:47 final size:47
Alignment explanation
Indices: 88038735--88038828 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
88038725 AATTATAGAG
88038735 ACAGATTTCCAGTCTCCTAGCTTGTTGAGAAACAAACTTACAATACT
1 ACAGATTTCCAGTCTCCTAGCTTGTTGAGAAACAAACTTACAATACT
* *
88038782 ACAGATTTCCAGTCTCCTAGTTTGTTGAGAAACAAATTTACAATACT
1 ACAGATTTCCAGTCTCCTAGCTTGTTGAGAAACAAACTTACAATACT
88038829 TGGTCCTTTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (47 bp):
ACAGATTTCCAGTCTCCTAGCTTGTTGAGAAACAAACTTACAATACT
Found at i:88041209 original size:18 final size:18
Alignment explanation
Indices: 88041182--88041221 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
88041172 TAAAATCGAA
*
88041182 TTAATCGATTTAATTTGG
1 TTAATCGATTTAATTTAG
* *
88041200 TTAATTGATTTAGTTTAG
1 TTAATCGATTTAATTTAG
88041218 TTAA
1 TTAA
88041222 AAATTAGTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.15, T:0.53
Consensus pattern (18 bp):
TTAATCGATTTAATTTAG
Found at i:88041657 original size:18 final size:18
Alignment explanation
Indices: 88041616--88041649 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
88041606 ATTGTTTCTC
*
88041616 AAAAA-TATTTTTAGGCT
1 AAAAAGTATTTTTAAGCT
88041633 AAAAAGTATTTTTAAGC
1 AAAAAGTATTTTTAAGC
88041650 AAAGAAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (18 bp):
AAAAAGTATTTTTAAGCT
Found at i:88041740 original size:22 final size:22
Alignment explanation
Indices: 88041715--88041783 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
88041705 TAAAATGTCC
88041715 AAAAAGCATATTATTTAACAAT
1 AAAAAGCATATTATTTAACAAT
* * *
88041737 AAAACA-CAT-TTA--AAATATTT
1 AAAA-AGCATATTATTTAACA-AT
*
88041757 AAAAAGTATATTATTTAACAAT
1 AAAAAGCATATTATTTAACAAT
88041779 AAAAA
1 AAAAA
88041784 TAATTATTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 12
0.64 0.13 0.23
Matches are distributed among these distances:
19 4 0.12
20 7 0.21
21 6 0.18
22 13 0.38
23 4 0.12
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.32
Consensus pattern (22 bp):
AAAAAGCATATTATTTAACAAT
Found at i:88041741 original size:42 final size:42
Alignment explanation
Indices: 88041695--88041782 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
88041685 TTTTGTTCAA
* *
88041695 AAAACACTTTTAAAATGTCCAAAAAGCATATTATTTAACAAT
1 AAAACACATTTAAAATATCCAAAAAGCATATTATTTAACAAT
** *
88041737 AAAACACATTTAAAATATTTAAAAAGTATATTATTTAACAAT
1 AAAACACATTTAAAATATCCAAAAAGCATATTATTTAACAAT
88041779 AAAA
1 AAAA
88041783 ATAATTATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.32
Consensus pattern (42 bp):
AAAACACATTTAAAATATCCAAAAAGCATATTATTTAACAAT
Found at i:88047302 original size:11 final size:11
Alignment explanation
Indices: 88047282--88047316 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
88047272 CATTATATCT
88047282 ATCAATTAACC
1 ATCAATTAACC
*
88047293 ATCAACTAACC
1 ATCAATTAACC
88047304 ATCAATTAACC
1 ATCAATTAACC
88047315 AT
1 AT
88047317 TTTAAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.26
Consensus pattern (11 bp):
ATCAATTAACC
Found at i:88051221 original size:46 final size:46
Alignment explanation
Indices: 88050856--88051214 Score: 531
Period size: 46 Copynumber: 7.8 Consensus size: 46
88050846 TTCGAAATGA
* * * * * *
88050856 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
88050902 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCTGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CATATCAGGT
* *
88050949 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
88050995 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
88051041 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
88051087 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
88051133 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
88051179 TGTCATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
88051215 TCTATCATAG
Statistics
Matches: 292, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
45 3 0.01
46 249 0.85
47 40 0.14
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:88053373 original size:11 final size:11
Alignment explanation
Indices: 88053357--88053408 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
88053347 TATACTAAAT
88053357 AAATAATAATA
1 AAATAATAATA
*
88053368 AAATAAT-ATT
1 AAATAATAATA
* *
88053378 AAATATCTCATA
1 AAATA-ATAATA
*
88053390 AAATATTAATA
1 AAATAATAATA
88053401 AAATAATA
1 AAATAATA
88053409 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:88055685 original size:13 final size:13
Alignment explanation
Indices: 88055664--88055701 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
88055654 ATGTGAACAA
88055664 TATTATTTAAAAT
1 TATTATTTAAAAT
* *
88055677 TATTTTTTAAATT
1 TATTATTTAAAAT
88055690 TATTA-TTAAAAT
1 TATTATTTAAAAT
88055702 AAAATTGAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TATTATTTAAAAT
Found at i:88065731 original size:59 final size:62
Alignment explanation
Indices: 88065664--88065780 Score: 159
Period size: 62 Copynumber: 1.9 Consensus size: 62
88065654 ATTACTTTAA
* * ** * *
88065664 TATTAAATTAATATAATATTT-T-T-CAAGATAATTATTAGATTAAATTCAATATTAAATCT
1 TATTAAATTAATAGAATATTTATCTAAAAGATAAACATTAAATTAAATTAAATATTAAATCT
88065723 TATTAAATTAATAGAATATTTATCTAAAAGATAAACATTAAATTAAATTAAATATTAA
1 TATTAAATTAATAGAATATTTATCTAAAAGATAAACATTAAATTAAATTAAATATTAA
88065781 GATAAATATT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 20 0.41
60 1 0.02
61 1 0.02
62 27 0.55
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.42
Consensus pattern (62 bp):
TATTAAATTAATAGAATATTTATCTAAAAGATAAACATTAAATTAAATTAAATATTAAATCT
Found at i:88065779 original size:12 final size:13
Alignment explanation
Indices: 88065764--88065811 Score: 50
Period size: 12 Copynumber: 4.0 Consensus size: 13
88065754 TAAACATTAA
88065764 ATTAA-ATTAAAT
1 ATTAAGATTAAAT
88065776 ATTAAGA-TAAAT
1 ATTAAGATTAAAT
88065788 ATTAA-ATTAAA-
1 ATTAAGATTAAAT
* *
88065799 GTTAATATTAAAT
1 ATTAAGATTAAAT
88065812 CTATTAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
11 5 0.16
12 25 0.81
13 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
ATTAAGATTAAAT
Found at i:88065783 original size:29 final size:29
Alignment explanation
Indices: 88065750--88065809 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
88065740 ATTTATCTAA
88065750 AAGATAAACATTAAATTAAA-TTAAATATT
1 AAGATAAACATTAAATTAAAGTT-AATATT
*
88065779 AAGATAAATATTAAATTAAAGTTAATATT
1 AAGATAAACATTAAATTAAAGTTAATATT
88065808 AA
1 AA
88065810 ATCTATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 27 0.93
30 2 0.07
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (29 bp):
AAGATAAACATTAAATTAAAGTTAATATT
Found at i:88072014 original size:56 final size:57
Alignment explanation
Indices: 88071940--88072056 Score: 175
Period size: 56 Copynumber: 2.1 Consensus size: 57
88071930 AGAAGAAATT
* * *
88071940 TTAATTTCTTAAATCTAACTAGCAAAGTGAAATTAG-GTAGCTGCAAGAATAACACTG
1 TTAATTTCTTAAATCTAACTAGCAAAGTAAAATT-GTATAGCAGCAAGAATAACACTG
*
88071997 TTAA-TTCTTGAATCTAACTAGCAAAGTAAAATTGTATAGCAGCAAGAATAACACTG
1 TTAATTTCTTAAATCTAACTAGCAAAGTAAAATTGTATAGCAGCAAGAATAACACTG
88072053 TTAA
1 TTAA
88072057 GCTAAGTACT
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
55 1 0.02
56 50 0.91
57 4 0.07
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.30
Consensus pattern (57 bp):
TTAATTTCTTAAATCTAACTAGCAAAGTAAAATTGTATAGCAGCAAGAATAACACTG
Found at i:88075047 original size:22 final size:22
Alignment explanation
Indices: 88075022--88075066 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
88075012 TTTAATAAAA
88075022 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
88075044 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
88075066 A
1 A
88075067 CACTCTCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:88079643 original size:22 final size:22
Alignment explanation
Indices: 88079618--88079662 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
88079608 TTTAATAAAA
88079618 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* * *
88079640 AAAATATTTATAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
88079662 A
1 A
88079663 CAAGTTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:88083397 original size:12 final size:12
Alignment explanation
Indices: 88083380--88083405 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
88083370 CCTAAAAAAC
88083380 AGTAACTTCCTA
1 AGTAACTTCCTA
88083392 AGTAACTTCCTA
1 AGTAACTTCCTA
88083404 AG
1 AG
88083406 AATCAGTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31
Consensus pattern (12 bp):
AGTAACTTCCTA
Found at i:88095093 original size:15 final size:15
Alignment explanation
Indices: 88095073--88095103 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
88095063 AGCATTGTAT
88095073 AGGTTTTTGTATTAG
1 AGGTTTTTGTATTAG
88095088 AGGTTTTTGTATTAG
1 AGGTTTTTGTATTAG
88095103 A
1 A
88095104 AGTTAGATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.52
Consensus pattern (15 bp):
AGGTTTTTGTATTAG
Found at i:88101652 original size:39 final size:40
Alignment explanation
Indices: 88101527--88101652 Score: 193
Period size: 40 Copynumber: 3.2 Consensus size: 40
88101517 GGACTAAGAT
*
88101527 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGTC
*
88101567 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
* *
88101607 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
88101646 CCGAAGG
1 CCGAAGG
88101653 TACTTGGGTT
Statistics
Matches: 80, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 15 0.19
40 64 0.80
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
Found at i:88103240 original size:41 final size:40
Alignment explanation
Indices: 88103143--88103241 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
88103133 GAAGTACTCT
* * **
88103143 TGTTTGCACAACTATGCCTCTGAATACACTTTGGTTTCCC
1 TGTTTGCACATCTATGCCCCTGAATACACTTTGGTGCCCC
*
88103183 TGTTTGCATAAT-TATGCCCCTGAATACACTTTCGGTGCCCC
1 TGTTTGCA-CATCTATGCCCCTGAATACACTTT-GGTGCCCC
*
88103224 TGTTCGCACATCTATGCC
1 TGTTTGCACATCTATGCC
88103242 TTTGACTGCA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
40 29 0.59
41 20 0.41
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (40 bp):
TGTTTGCACATCTATGCCCCTGAATACACTTTGGTGCCCC
Found at i:88108307 original size:13 final size:13
Alignment explanation
Indices: 88108268--88108320 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
88108258 AGTTTGGCAA
88108268 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
88108281 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
*
88108294 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
88108307 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
88108320 T
1 T
88108321 TTGGTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 3 0.09
13 28 0.82
14 3 0.09
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:88112804 original size:30 final size:30
Alignment explanation
Indices: 88112768--88112824 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
88112758 TCACACAGTC
88112768 GTGTGACTCACACGACCAAGAGACACGCCA
1 GTGTGACTCACACGACCAAGAGACACGCCA
*
88112798 GTGTGACTCACATGACCAAGAGACACG
1 GTGTGACTCACACGACCAAGAGACACG
88112825 TCCATGTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.30, G:0.25, T:0.12
Consensus pattern (30 bp):
GTGTGACTCACACGACCAAGAGACACGCCA
Found at i:88113074 original size:30 final size:30
Alignment explanation
Indices: 88113040--88113097 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
88113030 GGACACACGG
88113040 CCGTGTTACCTCGCCA-TGTGTCACACATGA
1 CCGTGTTACCT-GCCAGTGTGTCACACATGA
**
88113070 CCGTGTTACCTGGTAGTGTGTCACACAT
1 CCGTGTTACCTGCCAGTGTGTCACACAT
88113098 TGCTGAGACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.29
Consensus pattern (30 bp):
CCGTGTTACCTGCCAGTGTGTCACACATGA
Found at i:88115020 original size:47 final size:47
Alignment explanation
Indices: 88114950--88115080 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
88114940 CACAATTAAT
* * *
88114950 AAGTACCTATACCATGCCCCGTAGCCAAATCAAGGTAACTTATCCCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
* ** * *
88114997 GAGTACCTATACCATGGCCCGTAGCCAAATCAAAATAACTCCTCTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
* * *
88115044 AAATACTTATATCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
88115081 TTATTCGCAC
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
Found at i:88132617 original size:37 final size:37
Alignment explanation
Indices: 88132567--88132645 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
88132557 TTATTACGAA
* * *
88132567 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
88132604 GTCTTACTCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
88132641 GTCTT
1 GTCTT
88132646 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:88132840 original size:49 final size:49
Alignment explanation
Indices: 88132763--88132997 Score: 357
Period size: 49 Copynumber: 4.7 Consensus size: 49
88132753 GCCTTTCGGG
88132763 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
88132813 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATGTCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGG-CC-----CTATCACATATATATAC
88132868 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
**
88132917 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
88132964 ACTTTCAACAATTCATCACATCGGCCATTAGGCC
1 ACTTTC-AC-ATTCATCACATCGGCCATTAGGCC
88132998 ATACTATCAT
Statistics
Matches: 174, Mismatches: 3, Indels: 17
0.90 0.02 0.09
Matches are distributed among these distances:
47 14 0.08
48 2 0.01
49 103 0.59
50 6 0.03
54 2 0.01
55 47 0.27
ACGTcount: A:0.31, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
Found at i:88133014 original size:104 final size:101
Alignment explanation
Indices: 88132763--88132997 Score: 381
Period size: 104 Copynumber: 2.3 Consensus size: 101
88132753 GCCTTTCGGG
88132763 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
88132828 ACATCGGCCATTAGGCCCTATGTCTATCACATATATATAC
65 ACATCGGCCATTAGG-CCTA-GTCTATCACA-ATATATAC
88132868 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCA
88132933 CATCGGCCATTAGG-C-A-T-TATCAC-ATATATAC
66 CATCGGCCATTAGGCCTAGTCTATCACAATATATAC
88132964 ACTTTCAACAATTCATCACATCGGCCATTAGGCC
1 ACTTTC-AC-ATTCATCACATCGGCCATTAGGCC
88132998 ATACTATCAT
Statistics
Matches: 128, Mismatches: 0, Indels: 11
0.92 0.00 0.08
Matches are distributed among these distances:
96 14 0.11
97 2 0.02
98 30 0.23
99 1 0.01
101 1 0.01
102 1 0.01
104 75 0.59
105 4 0.03
ACGTcount: A:0.31, C:0.30, G:0.09, T:0.31
Consensus pattern (101 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTAGGCCTAGTCTATCACAATATATAC
Found at i:88136670 original size:39 final size:40
Alignment explanation
Indices: 88136527--88136823 Score: 313
Period size: 40 Copynumber: 7.5 Consensus size: 40
88136517 AGCATGATTA
* * * *
88136527 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
88136567 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
88136607 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
88136647 CTC-TCGGGACTTAGCCCGGATACATCACTAGCA-GAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
88136685 CTCTTCGGGA-TTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
88136724 CTCTTC-GGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
88136764 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
88136804 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
88136824 CATCATTCGA
Statistics
Matches: 219, Mismatches: 30, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
38 33 0.15
39 65 0.30
40 113 0.52
41 8 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:88136814 original size:157 final size:158
Alignment explanation
Indices: 88136527--88136823 Score: 352
Period size: 157 Copynumber: 1.9 Consensus size: 158
88136517 AGCATGATTA
* * **
88136527 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 CTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTTCGGACTTAGCACGGATATA
* * *
88136592 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTCGGGAC
66 TAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAAAGCTCTCGGGAC
88136657 TTAGCCCGGATACATCACTAGCAGAATG
131 TTAGCCCGGATACATCACTAGCAGAATG
* * * * * * *
88136685 CTCTTCGGGA-TTAGCCCGGATACATCGCTAGCATGAATGCTC-TTCGGACTTAGCCCGGATTTA
1 CTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTTCGGACTTAGCACGGATATA
* * * **
88136748 GTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCG
66 -TAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCACGAAAGCTC-TCG
88136810 GGACTTAGCCCGGA
127 GGACTTAGCCCGGA
88136824 CATCATTCGA
Statistics
Matches: 116, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
156 36 0.31
157 64 0.55
158 16 0.14
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (158 bp):
CTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTTCGGACTTAGCACGGATATA
TAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAAAGCTCTCGGGAC
TTAGCCCGGATACATCACTAGCAGAATG
Found at i:88136827 original size:117 final size:116
Alignment explanation
Indices: 88136531--88136827 Score: 280
Period size: 117 Copynumber: 2.5 Consensus size: 116
88136521 TGATTACTCT
* * * * * * * * * *
88136531 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATATCAC
1 TCGGGACTTAGCCCGGATACATCACTAGCAC-AAAGCTC-TTCGGGATTAGCCCGGA-ACATCGC
* *
88136596 TAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTC
63 TAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCACCAATGCTC
* *
88136650 TCGGGACTTAGCCCGGATACATCACTAGCAGAATGCTCTTCGGGATTAGCCCGGATACATCGCTA
1 TCGGGACTTAGCCCGGATACATCACTAGCACAAAGCTCTTCGGGATTAGCCCGGA-ACATCGCTA
* ** *
88136715 GCATGAATGCTCTTCGG-ACTTAGCCCGGATTTAGTAACTCGCACCAATGC-C
65 GCACGAATGCTCTTCGGAACTTAGCCCGGATACA-TAACTAGCACCAATGCTC
* **
88136766 TTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC-CTTCGGGACTTAGCCCGG-ACATC
1 -TCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACAAAGCTCTTCGGGA-TTAGCCCGGAACATC
88136828 ATTCGAATAA
Statistics
Matches: 151, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
116 18 0.12
117 70 0.46
118 19 0.13
119 44 0.29
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (116 bp):
TCGGGACTTAGCCCGGATACATCACTAGCACAAAGCTCTTCGGGATTAGCCCGGAACATCGCTAG
CACGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCACCAATGCTC
Found at i:88137168 original size:29 final size:29
Alignment explanation
Indices: 88137129--88137207 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
88137119 CTTAATAATC
*
88137129 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
88137159 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
88137188 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
88137208 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:88137250 original size:43 final size:43
Alignment explanation
Indices: 88137189--88137291 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
88137179 TGCATTTCAA
88137189 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
88137232 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
88137275 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
88137292 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:88139201 original size:36 final size:37
Alignment explanation
Indices: 88139154--88139231 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
88139144 TTATTACGAA
* * *
88139154 GTCTTACCCGGACATAATCTCCACACGAAGTTATC-G
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
88139190 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
88139227 GTCTT
1 GTCTT
88139232 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 31 0.84
37 6 0.16
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:88139460 original size:47 final size:47
Alignment explanation
Indices: 88139349--88139664 Score: 580
Period size: 47 Copynumber: 6.7 Consensus size: 47
88139339 GCCCTTCGGG
*
88139349 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
88139399 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
88139446 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
88139493 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
88139540 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
88139587 ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
88139633 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
88139665 ATACTATCAT
Statistics
Matches: 262, Mismatches: 3, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
46 45 0.17
47 179 0.68
49 34 0.13
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:88139603 original size:25 final size:25
Alignment explanation
Indices: 88139527--88139605 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
88139517 ATTAGGCCTT
88139527 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
88139552 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
88139574 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
88139599 ATCACAT
1 ATCACAT
88139606 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:88145222 original size:31 final size:31
Alignment explanation
Indices: 88145134--88145224 Score: 78
Period size: 31 Copynumber: 2.9 Consensus size: 31
88145124 GATGGGATGT
*
88145134 AAATTTTATCCCG-GGATTC-TCGAGTTTTCAG
1 AAATTTTATCCCGAGG-TTCTTAG-GTTTTCAG
* ** ** *
88145165 AAACTTTATCCTAAATTTCTCAGGTTTTCAG
1 AAATTTTATCCCGAGGTTCTTAGGTTTTCAG
*
88145196 AAATTTTATCCCGAGGTTCTTTGGTTTTC
1 AAATTTTATCCCGAGGTTCTTAGGTTTTC
88145225 GGAATTCAAT
Statistics
Matches: 44, Mismatches: 14, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
31 43 0.98
32 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.43
Consensus pattern (31 bp):
AAATTTTATCCCGAGGTTCTTAGGTTTTCAG
Found at i:88154329 original size:18 final size:17
Alignment explanation
Indices: 88154297--88154334 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
88154287 AATTTTTCAA
88154297 TAAATAAAAATATATAT
1 TAAATAAAAATATATAT
*
88154314 TAAATTAAAATA-ATA-
1 TAAATAAAAATATATAT
88154329 TAAATA
1 TAAATA
88154335 TATATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 5 0.26
16 3 0.16
17 11 0.58
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAATAAAAATATATAT
Found at i:88161696 original size:17 final size:16
Alignment explanation
Indices: 88161667--88161719 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
88161657 TTTGGTTAGC
88161667 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
88161683 TGTATTGAGATTAGAGG
1 TGTATTG-GATTAGAGG
88161700 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
88161716 TGTA
1 TGTA
88161720 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:88161784 original size:44 final size:45
Alignment explanation
Indices: 88161700--88161790 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
88161690 AGATTAGAGG
* * *
88161700 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
88161745 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
88161789 TG
1 TG
88161791 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:88161976 original size:18 final size:17
Alignment explanation
Indices: 88161955--88161989 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
88161945 TTATTATTAA
*
88161955 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
88161973 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
88161990 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:88162216 original size:18 final size:17
Alignment explanation
Indices: 88162195--88162229 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
88162185 TTATTATTAA
*
88162195 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
88162213 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
88162230 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:88162784 original size:66 final size:66
Alignment explanation
Indices: 88162713--88162911 Score: 210
Period size: 66 Copynumber: 3.2 Consensus size: 66
88162703 TGAAATTCTT
*
88162713 AATAATTAATATTCTTATATTAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTG
1 AATAATTAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTG
88162778 A
66 A
* ** *
88162779 AATAATTATTATT-AAATA-AAATTTAATTAAAAT-AT-ATGAT-T--TA--ATAAAAT-T--TT
1 AATAATTAATATTCTTATATAAATTT-ACTAAAATCATAAT-ATATGATACTATAAAATATAATT
88162832 T--
64 TGA
* *
88162833 AATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTG
1 AATAATTAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTG
88162898 A
66 A
*
88162899 AATAATTATTATT
1 AATAATTAATATT
88162912 AAATATATTT
Statistics
Matches: 104, Mismatches: 13, Indels: 32
0.70 0.09 0.21
Matches are distributed among these distances:
54 11 0.11
55 10 0.10
56 12 0.12
57 3 0.03
58 1 0.01
59 9 0.09
61 9 0.09
62 1 0.01
63 3 0.03
64 12 0.12
65 10 0.10
66 23 0.22
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (66 bp):
AATAATTAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTG
A
Found at i:88162935 original size:18 final size:17
Alignment explanation
Indices: 88162912--88162948 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
88162902 AATTATTATT
88162912 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
88162928 AAATATATGATTTAATA
1 AAATATATGATTTAATA
88162945 AAAT
1 AAAT
88162949 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:88162958 original size:120 final size:120
Alignment explanation
Indices: 88161938--88162949 Score: 1787
Period size: 120 Copynumber: 8.4 Consensus size: 120
88161928 ATCATATTTA
88161938 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
88162003 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
88162058 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAACTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
88162123 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
88162178 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
88162243 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
88162298 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
88162363 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
88162418 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
88162483 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
88162538 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
88162603 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
88162658 AACAT-ATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
88162722 TATTCTTATATTAATTTACTAAAATCATAATATATGATACTATAAAATATAATTT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* * * * *
88162777 GAA-ATAATTATTATTAAATAAAATTTAATTAAAATATATGATTTAATAAAATTTTTAATAATCA
1 -AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
* * * *
88162841 ATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTT
65 ATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
88162897 GAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
88162950 TAAAATAATT
Statistics
Matches: 864, Mismatches: 26, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
119 111 0.13
120 753 0.87
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:88163033 original size:15 final size:15
Alignment explanation
Indices: 88162990--88163043 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
88162980 TATGAATTTG
88162990 TATAATTTAA-AATA
1 TATAATTTAATAATA
* *
88163004 -ATTA-TTATTAA-A
1 TATAATTTAATAATA
88163016 TATAATTTAATAATA
1 TATAATTTAATAATA
*
88163031 TATAATTTCATAA
1 TATAATTTAATAA
88163044 AATTCTTGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
12 4 0.13
13 8 0.26
14 6 0.19
15 13 0.42
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
TATAATTTAATAATA
Found at i:88163076 original size:71 final size:73
Alignment explanation
Indices: 88162995--88163130 Score: 231
Period size: 71 Copynumber: 1.9 Consensus size: 73
88162985 ATTTGTATAA
*
88162995 TTTAAAATAATTATTATTAAATATAATTTAAT-A-ATATATAATTTCATAAAATTCTTGATAATA
1 TTTAAAATAATTAATATTAAATATAATTTAATAAGATATATAATTTCATAAAATTCTTGATAATA
88163058 AATTTTCT
66 AATTTTCT
*
88163066 TTTAGAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAAT
1 TTTAAAATAATTAATATTAAATATAATTTAATAA-GATATATAATTTCATAAAATTCTTGATAAT
88163131 TTAATCATGA
Statistics
Matches: 60, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
71 30 0.50
72 1 0.02
74 29 0.48
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (73 bp):
TTTAAAATAATTAATATTAAATATAATTTAATAAGATATATAATTTCATAAAATTCTTGATAATA
AATTTTCT
Found at i:88167592 original size:41 final size:42
Alignment explanation
Indices: 88167547--88167626 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 42
88167537 ATGCAGGGGA
*
88167547 CACACGGCCT-ATCAACATACCCGTGTG-CAAGCCGTGTGTCT
1 CACACGGCCTGATC-ACACACCCGTGTGACAAGCCGTGTGTCT
* * *
88167588 CACACGGTCTGATCACACGCCCGTGTGACATGCCGTGTG
1 CACACGGCCTGATCACACACCCGTGTGACAAGCCGTGTG
88167627 GATTCAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 20 0.61
42 13 0.39
ACGTcount: A:0.20, C:0.34, G:0.25, T:0.21
Consensus pattern (42 bp):
CACACGGCCTGATCACACACCCGTGTGACAAGCCGTGTGTCT
Found at i:88169432 original size:17 final size:17
Alignment explanation
Indices: 88169402--88169445 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
88169392 AAATTATATA
*
88169402 ATATAATATAATTTACT
1 ATATATTATAATTTACT
*
88169419 ATATATTATTATTTACT
1 ATATATTATAATTTACT
*
88169436 -TATATAATAA
1 ATATATTATAA
88169446 GTAAGTACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATATTATAATTTACT
Done.