Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 268 of 362
Found at i:90347012 original size:40 final size:40
Alignment explanation
Indices: 90346858--90347118 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 40
90346848 TCCTCGTTCA
* * * * *
90346858 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
90346897 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
90346937 AATGCCTTC-GGACTTAACCC-GATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
90346975 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
90347015 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
90347055 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
90347095 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
90347119 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
38 26 0.13
39 58 0.30
40 104 0.53
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:90347127 original size:41 final size:41
Alignment explanation
Indices: 90347050--90347127 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
90347040 TTAGTATCTC
* * *
90347050 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
90347091 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
90347128 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:90360407 original size:47 final size:47
Alignment explanation
Indices: 90360310--90360432 Score: 158
Period size: 47 Copynumber: 2.6 Consensus size: 47
90360300 GTGCGAATAA
* *
90360310 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGT
* * * *
90360357 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATAATT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGT
* * *
90360404 TACCTTGATTTTGCTA-TGGTCATGGTATA
1 TACCTTGATTTGGCTACGGGCCATGGTATA
90360433 AATACTTATC
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 11 0.16
47 56 0.84
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGT
Found at i:90366627 original size:16 final size:17
Alignment explanation
Indices: 90366595--90366627 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
90366585 ACTTGCATAC
*
90366595 AAAATATCTCATTAACA
1 AAAATATCTCATAAACA
90366612 AAAATATCTC-TAAACA
1 AAAATATCTCATAAACA
90366628 TTCATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATATCTCATAAACA
Found at i:90368477 original size:42 final size:42
Alignment explanation
Indices: 90368396--90368520 Score: 130
Period size: 42 Copynumber: 3.0 Consensus size: 42
90368386 ATGTTGGTGC
* *
90368396 CGATGCCATGTCCCAA-ACATGGTCTTATACA-G-GACCTCATAT
1 CGATGCCATGT-CCAAGACATGGTC-T-TACATGAAATCTCATAT
90368438 CGATGCCATGTCCAAGACATGGTCTTACATGAAATCTCATAT
1 CGATGCCATGTCCAAGACATGGTCTTACATGAAATCTCATAT
* * * * * *
90368480 CAACGCCATATCCTAGATATGGTCTTACATGAAATCACATA
1 CGATGCCATGTCCAAGACATGGTCTTACATGAAATCTCATA
90368521 CCGGTGCCGA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
40 4 0.06
41 6 0.08
42 62 0.86
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (42 bp):
CGATGCCATGTCCAAGACATGGTCTTACATGAAATCTCATAT
Found at i:90368567 original size:48 final size:48
Alignment explanation
Indices: 90368526--90368701 Score: 271
Period size: 48 Copynumber: 3.7 Consensus size: 48
90368516 ACATACCGGT
* *
90368526 GCCGATGCCATATCCCAGATATGGTCTTACACTGGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
* * * *
90368574 ACCGATGCTATGTCCCAAACATGGTCTTACACTGGCACACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
** *
90368622 GCTAATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
90368670 GCCGATGCCATGTCCCAGACATGGTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
90368702 GGGATCTCAT
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.23
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
Found at i:90372655 original size:22 final size:22
Alignment explanation
Indices: 90372627--90372675 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
90372617 CTTTCCAAAG
*
90372627 ACTAACCAATAAGGAGTCATTC
1 ACTAACCAATAAGGAGTAATTC
90372649 ACTAACCAATAAGGAGTAATTC
1 ACTAACCAATAAGGAGTAATTC
90372671 -CTAAC
1 ACTAAC
90372676 GGTGCCTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.43, C:0.22, G:0.12, T:0.22
Consensus pattern (22 bp):
ACTAACCAATAAGGAGTAATTC
Found at i:90381752 original size:29 final size:29
Alignment explanation
Indices: 90381711--90381829 Score: 129
Period size: 28 Copynumber: 4.2 Consensus size: 29
90381701 ACATGGCTTG
* *
90381711 GAAT-TGATTTGGGTC-AGATGGGTCATAT
1 GAATGTGATTTGGGCCTA-ATGGGCCATAT
90381739 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
* **
90381768 GAATGAGA-TTGGGCCTTGTGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
* *
90381796 GAATGAGA-TTGGGCCTAGTGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
*
90381824 GCATGT
1 GAATGT
90381830 ATGTAGACTT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
28 53 0.65
29 27 0.33
30 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.34, T:0.30
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAT
Found at i:90381789 original size:28 final size:28
Alignment explanation
Indices: 90381729--90381824 Score: 147
Period size: 28 Copynumber: 3.4 Consensus size: 28
90381719 TTGGGTCAGA
* * *
90381729 TGGGTCATATGAATGTGATTTGGGCCTAA
1 TGGGCCATATGAATGAGA-TTGGGCCTAG
*
90381758 TGGGCCATATGAATGAGATTGGGCCTTG
1 TGGGCCATATGAATGAGATTGGGCCTAG
90381786 TGGGCCATATGAATGAGATTGGGCCTAG
1 TGGGCCATATGAATGAGATTGGGCCTAG
90381814 TGGGCCATATG
1 TGGGCCATATG
90381825 CATGTATGTA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
28 46 0.74
29 16 0.26
ACGTcount: A:0.23, C:0.14, G:0.34, T:0.29
Consensus pattern (28 bp):
TGGGCCATATGAATGAGATTGGGCCTAG
Found at i:90387572 original size:13 final size:13
Alignment explanation
Indices: 90387554--90387581 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
90387544 CTGGACTTAC
90387554 TCACACGGGTGTG
1 TCACACGGGTGTG
90387567 TCACACGGGTGTG
1 TCACACGGGTGTG
90387580 TC
1 TC
90387582 TCTTTGGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.25, G:0.36, T:0.25
Consensus pattern (13 bp):
TCACACGGGTGTG
Found at i:90387687 original size:13 final size:13
Alignment explanation
Indices: 90387669--90387695 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
90387659 GGAGTAATCA
90387669 CACACGGGCGTGT
1 CACACGGGCGTGT
90387682 CACACGGGCGTGT
1 CACACGGGCGTGT
90387695 C
1 C
90387696 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:90399235 original size:27 final size:26
Alignment explanation
Indices: 90399195--90399306 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
90399185 AGCATGGCTG
* * *
90399195 CCAGAACAGATAATGCGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
90399221 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
90399249 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
90399276 CCAGATCAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGGCAG-AGCCA
90399303 CCAG
1 CCAG
90399307 GACGCTTCGT
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.09
27 52 0.69
28 16 0.21
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:90399286 original size:54 final size:54
Alignment explanation
Indices: 90399195--90399306 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
90399185 AGCATGGCTG
*
90399195 CCAGAACAGATAATGCGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCA
1 CCAGAACAGATAATGCGACAGAGCCACCAGATACAGATAATCGTGGC-GTAGCCA
* * * *
90399249 CCAGAATAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCGTAGCCA
1 CCAGAACAGATA-ATGCGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCA
90399303 CCAG
1 CCAG
90399307 GACGCTTCGT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.65
55 17 0.33
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGCGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCA
Found at i:90399736 original size:8 final size:8
Alignment explanation
Indices: 90399720--90399761 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
90399710 TCTCAAAATA
90399720 TCGGCATT
1 TCGGCATT
*
90399728 TCAGCATT
1 TCGGCATT
*
90399736 TCGGCTTT
1 TCGGCATT
90399744 TCGGCATT
1 TCGGCATT
*
90399752 TCGGCTTT
1 TCGGCATT
90399760 TC
1 TC
90399762 AGTTTTTGCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.10, C:0.26, G:0.21, T:0.43
Consensus pattern (8 bp):
TCGGCATT
Found at i:90399745 original size:16 final size:16
Alignment explanation
Indices: 90399720--90399763 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
90399710 TCTCAAAATA
*
90399720 TCGGCATTTCAGCATT
1 TCGGCTTTTCAGCATT
*
90399736 TCGGCTTTTCGGCATT
1 TCGGCTTTTCAGCATT
90399752 TCGGCTTTTCAG
1 TCGGCTTTTCAG
90399764 TTTTTGCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.11, C:0.25, G:0.23, T:0.41
Consensus pattern (16 bp):
TCGGCTTTTCAGCATT
Found at i:90399768 original size:24 final size:24
Alignment explanation
Indices: 90399720--90399768 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
90399710 TCTCAAAATA
*
90399720 TCGGCATTTCAGCATTTCGGCTTT
1 TCGGCATTTCAGCATTTCAGCTTT
* * *
90399744 TCGGCATTTCGGCTTTTCAGTTTT
1 TCGGCATTTCAGCATTTCAGCTTT
90399768 T
1 T
90399769 GCCAATCTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.10, C:0.22, G:0.20, T:0.47
Consensus pattern (24 bp):
TCGGCATTTCAGCATTTCAGCTTT
Found at i:90403959 original size:46 final size:45
Alignment explanation
Indices: 90403892--90404066 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
90403882 TGTAACCCGC
*
90403892 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* * *
90403938 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* *** * * *
90403984 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
90404031 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
90404067 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.65
47 34 0.32
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:90404011 original size:93 final size:93
Alignment explanation
Indices: 90403899--90404071 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
90403889 CGCCCATAAG
* * *
90403899 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
90403964 ATGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
90403992 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
90404057 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
90404072 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:90409337 original size:20 final size:20
Alignment explanation
Indices: 90409312--90409359 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
90409302 TGGATCTATG
90409312 GCTACTACAATAGGTGTGCC
1 GCTACTACAATAGGTGTGCC
90409332 GCTACTACAATAGGTGTGCC
1 GCTACTACAATAGGTGTGCC
*
90409352 TCTACTAC
1 GCTACTAC
90409360 GAATCATACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (20 bp):
GCTACTACAATAGGTGTGCC
Found at i:90410834 original size:23 final size:23
Alignment explanation
Indices: 90410799--90410843 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
90410789 CATACTCACA
90410799 AACAACACAAATAGAACACGAAC
1 AACAACACAAATAGAACACGAAC
* * *
90410822 AACAACTCCAATAGAATACGAA
1 AACAACACAAATAGAACACGAA
90410844 GAAATAGGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.58, C:0.24, G:0.09, T:0.09
Consensus pattern (23 bp):
AACAACACAAATAGAACACGAAC
Found at i:90419484 original size:17 final size:16
Alignment explanation
Indices: 90419462--90419497 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
90419452 TTAAAATTTT
*
90419462 AAACTAAAAATAAAGTA
1 AAACTAAAAA-AAAGGA
90419479 AAACTAAAAAAAAGGA
1 AAACTAAAAAAAAGGA
90419495 AAA
1 AAA
90419498 GAAAGAGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.75, C:0.06, G:0.08, T:0.11
Consensus pattern (16 bp):
AAACTAAAAAAAAGGA
Found at i:90425207 original size:27 final size:27
Alignment explanation
Indices: 90425177--90425354 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
90425167 ATATTGAGTC
* * * *
90425177 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
90425204 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
90425231 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
90425259 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
90425286 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
90425313 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
90425340 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90425355 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:90425316 original size:82 final size:81
Alignment explanation
Indices: 90425198--90425353 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
90425188 TGCTATATAA
* *
90425198 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
90425263 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
90425280 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
90425344 CACTTAGTGC
65 CACTTAGTGC
90425354 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:90433257 original size:27 final size:27
Alignment explanation
Indices: 90433227--90433404 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
90433217 ATATTGAGTC
* * * *
90433227 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
90433254 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
90433281 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
90433309 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
90433336 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
90433363 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
90433390 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90433405 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:90433366 original size:82 final size:81
Alignment explanation
Indices: 90433248--90433403 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
90433238 TGCTATATAA
* *
90433248 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
90433313 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
90433330 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
90433394 CACTTAGTGC
65 CACTTAGTGC
90433404 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:90438546 original size:134 final size:134
Alignment explanation
Indices: 90438306--90438568 Score: 463
Period size: 134 Copynumber: 2.0 Consensus size: 134
90438296 CCCGAAGTAA
90438306 GTTCGTATATGATAAATTTCATTATAAATGAATTTTAAATGCTTTGATACTGTATAAGTTGTGAA
1 GTTCGTATATGATAAATTTCATTATAAATGAATTTTAAATGCTTTGATACTGTATAAGTTGTGAA
* * * *
90438371 TACAAGACTTCGGATAAGTTTGACATTAACTCTATAGGAATTCGGCATTCGAAATCCCGGTTGAT
66 TACAAGACTTCGAATAAGTTCGACATTAACTCGATAGGAATTCGACATTCGAAATCCCGGTTGAT
90438436 GTAT
131 GTAT
*
90438440 GTTCGTATGTGATAAATTTCATTATAAATGAATTTTAAATGCTTTGATACTGTATAAGTTGTGAA
1 GTTCGTATATGATAAATTTCATTATAAATGAATTTTAAATGCTTTGATACTGTATAAGTTGTGAA
* *
90438505 TACAAGACTTCGAATAAGTTCGACATTGACTCGATAGGAATTCGACATTCGAAATCCTGGTTGA
66 TACAAGACTTCGAATAAGTTCGACATTAACTCGATAGGAATTCGACATTCGAAATCCCGGTTGA
90438569 ACCAAAGGAA
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
134 122 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (134 bp):
GTTCGTATATGATAAATTTCATTATAAATGAATTTTAAATGCTTTGATACTGTATAAGTTGTGAA
TACAAGACTTCGAATAAGTTCGACATTAACTCGATAGGAATTCGACATTCGAAATCCCGGTTGAT
GTAT
Found at i:90438725 original size:29 final size:29
Alignment explanation
Indices: 90438664--90438725 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
90438654 GCGAGTTATA
* *
90438664 CTGATTTGGCTTCAGGCCATGAGTATCAG
1 CTGATTTGGCTTCAGGCCATGAGTAACAC
* *
90438693 CTGATTTGGCTTCGGGCCATTA-TAACATC
1 CTGATTTGGCTTCAGGCCATGAGTAACA-C
90438722 CTGA
1 CTGA
90438726 CTTAGGGCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 4 0.14
29 24 0.86
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGATTTGGCTTCAGGCCATGAGTAACAC
Found at i:90441636 original size:38 final size:39
Alignment explanation
Indices: 90441586--90441797 Score: 183
Period size: 46 Copynumber: 4.9 Consensus size: 39
90441576 CTGATATGAA
90441586 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
90441625 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
90441668 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G
* * *
90441716 ATGTGTAAGACCATGATTAAAAGATACCATGGCAACATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
90441755 ACATGAAAAGAATAAGACCATAGTTGAAAGATACCATGGCAAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
90441798 ATGACAGAAA
Statistics
Matches: 149, Mismatches: 7, Indels: 27
0.81 0.04 0.15
Matches are distributed among these distances:
38 36 0.24
39 1 0.01
41 4 0.03
43 2 0.01
44 1 0.01
46 104 0.70
48 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:90441692 original size:46 final size:46
Alignment explanation
Indices: 90441625--90441841 Score: 283
Period size: 46 Copynumber: 4.7 Consensus size: 46
90441615 TGGCAACCTG
* *
90441625 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* * *
90441671 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* *
90441717 TGTGTAAGACCATGATTAAAAGATACCATGGCAACATGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* ** *
90441763 AGAATAAGACCATAGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAA
* * * *
90441809 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
90441842 TCACGTCAAA
Statistics
Matches: 154, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 153 0.99
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
Found at i:90441817 original size:138 final size:130
Alignment explanation
Indices: 90441576--90441841 Score: 336
Period size: 138 Copynumber: 2.0 Consensus size: 130
90441566 AGTGTGCTCT
* * * * *
90441576 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGATTAAAAGATACCATGGCAACATGTGAGTAAGACCATAGT
* * * * *
90441641 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
90441706 CTGATATGAGATGTGTAAGACCATGATTAAAAGATACCATGGCAACATGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGATTAAAAGATACCATGGCAACATG---TG---AG--TAAG
90441771 ACCATAGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACAC
58 ACCATAGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACAC
*
90441835 TATGGCA
122 CATGGCA
90441842 TCACGTCAAA
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
130 45 0.39
133 2 0.02
136 1 0.01
137 1 0.01
138 66 0.57
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGATTAAAAGATACCATGGCAACATGTGAGTAAGACCATAGT
TGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:90442147 original size:23 final size:25
Alignment explanation
Indices: 90442102--90442148 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
90442092 AATAAATATA
*
90442102 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
90442127 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
90442149 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:90446290 original size:11 final size:11
Alignment explanation
Indices: 90446274--90446302 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
90446264 ATTTTGTCTT
90446274 TGAATTTTTGA
1 TGAATTTTTGA
90446285 TGAATTTTTGA
1 TGAATTTTTGA
90446296 TGAATTT
1 TGAATTT
90446303 GAGTAATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (11 bp):
TGAATTTTTGA
Found at i:90447016 original size:43 final size:44
Alignment explanation
Indices: 90446859--90447017 Score: 125
Period size: 43 Copynumber: 3.7 Consensus size: 44
90446849 TATGTGTTTT
* * *
90446859 CGTGTAAGACCACGTCTGGGAC-GTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCATGTCTAGGACAGTTGGCATCGA-TATTTGA-TTA
* * ** * *
90446903 CGTGTAAAACCATGTTTAGGACA-TCAGCATCG-TATTTAATTT
1 CGTGTAAGACCATGTCTAGGACAGTTGGCATCGATATTTGATTA
* * *
90446945 TGTGTAAGACCCA-GTCTGGGATAG-TGGCATCGATATTTGATTA
1 CGTGTAAGA-CCATGTCTAGGACAGTTGGCATCGATATTTGATTA
*
90446988 CATGTAAGACCATGTCTAGGA-AGTTGGCAT
1 CGTGTAAGACCATGTCTAGGACAGTTGGCAT
90447018 TGTACGAGCT
Statistics
Matches: 87, Mismatches: 21, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
42 28 0.32
43 34 0.39
44 25 0.29
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTAGGACAGTTGGCATCGATATTTGATTA
Found at i:90454434 original size:43 final size:43
Alignment explanation
Indices: 90454279--90454435 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
90454269 TGTGTTTTCG
* *
90454279 TGTAAGACCACGTCTGGGA-AGTTGGCATTGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACA-TTGGCATCGA-TATTTGA-TTACA
* * * * * * *
90454323 TGTAAGCCCATGTCTGGGACATCGACATC-TTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
** * *
90454365 TGTAAGACCTTGTCTAGGACAATGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
* *
90454408 TGTAAGACCACGTCTGGGGCGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
90454436 TGTATGAGCT
Statistics
Matches: 86, Mismatches: 24, Indels: 7
0.74 0.21 0.06
Matches are distributed among these distances:
42 27 0.31
43 36 0.42
44 22 0.26
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
Found at i:90456314 original size:21 final size:22
Alignment explanation
Indices: 90456285--90456325 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
90456275 GAGTGTATTG
*
90456285 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
90456307 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
90456326 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:90463358 original size:30 final size:30
Alignment explanation
Indices: 90463323--90463381 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
90463313 TTTACGAGCC
90463323 TAGGGGCAAAAATGTAATTTTGA-CAAAATT
1 TAGGGGCAAAAATGTAATTTT-ACCAAAATT
*
90463353 TAGGGGCAAAATTGTAATTTTACCAAAAT
1 TAGGGGCAAAAATGTAATTTTACCAAAAT
90463382 ATGATTTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTTTACCAAAATT
Found at i:90463699 original size:27 final size:27
Alignment explanation
Indices: 90463658--90463711 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
90463648 TGTCATGTGA
* *
90463658 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
90463685 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
90463712 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:90464153 original size:101 final size:98
Alignment explanation
Indices: 90463971--90464188 Score: 283
Period size: 101 Copynumber: 2.2 Consensus size: 98
90463961 CACATTTTTG
* *
90463971 TACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACTAAGTGTAGGCTA
1 TACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCTA
* *
90464036 CTATGCGTACCCGATAACTTTGATCACGTGTGTAA
66 CTACGCGTACCCGATAA--TTGATCACATGTGTAA
** ** *
90464071 TACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCT
1 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAGTGCAGGCT
* ** * *
90464136 ACTACGTGTACTGGATAATTGGTCACATGTGTAG
65 ACTACGCGTACCCGATAATTGATCACATGTGTAA
90464170 TACTAAGTGCAGGCTACTA
1 TACTAAGTGCAGGCTACTA
90464189 TGCGTACTAA
Statistics
Matches: 103, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
99 32 0.31
100 30 0.29
101 41 0.40
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (98 bp):
TACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCTA
CTACGCGTACCCGATAATTGATCACATGTGTAA
Found at i:90464196 original size:49 final size:49
Alignment explanation
Indices: 90463970--90464188 Score: 285
Period size: 49 Copynumber: 4.4 Consensus size: 49
90463960 TCACATTTTT
*
90463970 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACATGTGTA
* * * ** * *
90464019 GTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTTGATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACTGGATAA--TTGGTCACATGTGTA
* * * ** *
90464070 ATACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACTGGATAATT-GGTCACATGTGTA
90464120 GTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACATGTGTA
90464169 GTACTAAGTGCAGGCTACTA
1 GTACTAAGTGCAGGCTACTA
90464189 TGCGTACTAA
Statistics
Matches: 145, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 64 0.44
50 43 0.30
51 38 0.26
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
GTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACATGTGTA
Found at i:90467265 original size:38 final size:38
Alignment explanation
Indices: 90467222--90467373 Score: 178
Period size: 38 Copynumber: 3.8 Consensus size: 38
90467212 TTTCAAATTA
90467222 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
90467260 ACATGTTTAACCGTGGTATATCCACTTAGCACCATGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
90467301 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
*
90467345 ACATGTTTAACCGTGGCATATCCACTTAG
1 ACATGTATAACCGTGGCATATCCACTTAG
90467374 TGTGACAGCC
Statistics
Matches: 96, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
38 55 0.57
39 1 0.01
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 1 0.01
47 27 0.28
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:90469140 original size:40 final size:39
Alignment explanation
Indices: 90469084--90469271 Score: 268
Period size: 40 Copynumber: 5.0 Consensus size: 39
90469074 TCGGATGATA
* *
90469084 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-T
*
90469124 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
90469163 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-T--T-T
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
90469199 ACCGGGCTAAGT-CCGAAGGCA-TT-TGCGAGTTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
90469235 ACC-GGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
90469272 CGTACCGAAG
Statistics
Matches: 137, Mismatches: 4, Indels: 17
0.87 0.03 0.11
Matches are distributed among these distances:
32 6 0.04
33 3 0.02
34 9 0.07
35 20 0.15
36 17 0.12
37 14 0.10
39 2 0.01
40 66 0.48
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:90469310 original size:65 final size:66
Alignment explanation
Indices: 90469128--90469322 Score: 218
Period size: 65 Copynumber: 2.8 Consensus size: 66
90469118 ACTAGTTCCG
90469128 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAG--CCGAAGGCA--TGTGCGAGTTAC--TATCC-GGCTAAGTCCCGAAGGCA-TTGTGC
90469193 GAGTTTACC
58 GAGTTTACC
*
90469202 GGGCTAAGTCCGAAGGCATTTGCGAGTTACTATACCGGCTAAGTCCCGAAGGCATTGTGCGAGTT
1 -GGCTAAG-CCGAAGGCATGTGCGAGTTACTAT-CCGGCTAAGTCCCGAAGGCATTGTGCGAGTT
*
90469267 ACTATC
63 --TACC
90469273 -G-T-A-CCGAAGGCATGGTGCGAGTTACTATCCGGCTAAGTCCCGAAGGCATT
1 GGCTAAGCCGAAGGCAT-GTGCGAGTTACTATCCGGCTAAGTCCCGAAGGCATT
90469323 TGAGCTAGTA
Statistics
Matches: 112, Mismatches: 4, Indels: 18
0.84 0.03 0.13
Matches are distributed among these distances:
65 32 0.29
66 13 0.12
67 1 0.01
68 1 0.01
69 12 0.11
70 21 0.19
71 5 0.04
72 11 0.10
74 9 0.08
75 7 0.06
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (66 bp):
GGCTAAGCCGAAGGCATGTGCGAGTTACTATCCGGCTAAGTCCCGAAGGCATTGTGCGAGTTTAC
C
Found at i:90477234 original size:40 final size:40
Alignment explanation
Indices: 90477177--90477424 Score: 403
Period size: 40 Copynumber: 6.2 Consensus size: 40
90477167 GGATTGATAC
90477177 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
90477217 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
90477257 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
90477297 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATCA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
*
90477337 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
90477377 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
90477417 CC-GGCTAA
1 CCGGGCTAA
90477425 ACTCCGAAGG
Statistics
Matches: 197, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
39 9 0.05
40 187 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:90481663 original size:15 final size:15
Alignment explanation
Indices: 90481640--90481673 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
90481630 GAAGCCTAGA
*
90481640 ATAAGGAAATCCAAG
1 ATAAAGAAATCCAAG
*
90481655 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
90481670 ATAA
1 ATAA
90481674 GCAAATCCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.12, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:90483534 original size:14 final size:14
Alignment explanation
Indices: 90483515--90483550 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
90483505 AGTCACACGC
90483515 CCGTGTGGATTGGG
1 CCGTGTGGATTGGG
90483529 CCGTGTGGATTGGG
1 CCGTGTGGATTGGG
90483543 CCGTGTGG
1 CCGTGTGG
90483551 TCAATTTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.06, C:0.17, G:0.50, T:0.28
Consensus pattern (14 bp):
CCGTGTGGATTGGG
Found at i:90484846 original size:11 final size:11
Alignment explanation
Indices: 90484809--90484870 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
90484799 AAACACAACA
90484809 AAAAGCAGCAGC
1 AAAA-CAGCAGC
*
90484821 AAAACAACA-C
1 AAAACAGCAGC
* *
90484831 TAAAATAGCGGC
1 -AAAACAGCAGC
90484843 AAAACAGCAGC
1 AAAACAGCAGC
* *
90484854 AAAACAACATC
1 AAAACAGCAGC
90484865 AAAACA
1 AAAACA
90484871 ACACCGAACA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
10 1 0.03
11 34 0.85
12 5 0.12
ACGTcount: A:0.58, C:0.24, G:0.13, T:0.05
Consensus pattern (11 bp):
AAAACAGCAGC
Found at i:90490804 original size:38 final size:38
Alignment explanation
Indices: 90490753--90490913 Score: 243
Period size: 38 Copynumber: 4.2 Consensus size: 38
90490743 TCGAAATATG
90490753 ATATCCGGGTTAAATCCCGCAGGCTTCGTGC-GCGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTG-GTATT
* * *
90490791 ATATCCAGGTTAAATCCCACAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
90490829 ATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* *
90490867 ATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
90490905 ATATTCGGG
1 ATATCCGGG
90490914 CCTTTGAGCC
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 110 0.99
39 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
Found at i:90491003 original size:45 final size:45
Alignment explanation
Indices: 90490907--90491019 Score: 117
Period size: 46 Copynumber: 2.5 Consensus size: 45
90490897 CTGGTATTAT
* * * * *
90490907 ATTCGGGCCTTT-GAGCCTAACAGACTATTATGTCGGTGAGACATT
1 ATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGACATG
90490952 ATTCGGGCTTTTCGAGCCTAGCAGGCTATAATGCCGGTGA-A-ATG
1 ATTCGGGC-TTTCGAGCCTAGCAGGCTATAATGCCGGTGAGACATG
*
90490996 ATATCGGGC-CTCGAGCCTAGCAGG
1 AT-TCGGGCTTTCGAGCCTAGCAGG
90491020 AAAAATACCA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
43 14 0.24
44 5 0.08
45 17 0.29
46 23 0.39
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
ATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGACATG
Found at i:90492136 original size:14 final size:15
Alignment explanation
Indices: 90492104--90492142 Score: 62
Period size: 14 Copynumber: 2.6 Consensus size: 15
90492094 AAGCTTATTG
90492104 TGAAGAAGACAACAAA
1 TGAAGAAG-CAACAAA
90492120 TGAAGAAGCAA-AAA
1 TGAAGAAGCAACAAA
90492134 TGAAGAAGC
1 TGAAGAAGC
90492143 TATTGAGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 12 0.52
15 3 0.13
16 8 0.35
ACGTcount: A:0.59, C:0.10, G:0.23, T:0.08
Consensus pattern (15 bp):
TGAAGAAGCAACAAA
Found at i:90492335 original size:11 final size:10
Alignment explanation
Indices: 90492301--90492332 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
90492291 TTATTTTAAA
90492301 AATTAAAAAT
1 AATTAAAAAT
90492311 AA--AAAAAT
1 AATTAAAAAT
90492319 AATTAAAAAT
1 AATTAAAAAT
90492329 AATT
1 AATT
90492333 TAATATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AATTAAAAAT
Found at i:90492337 original size:18 final size:18
Alignment explanation
Indices: 90492295--90492343 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
90492285 GTAAAGTTAT
*
90492295 TTTAAAAATTAAAAATAA
1 TTTAATAATTAAAAATAA
***
90492313 AAAAATAATTAAAAATAA
1 TTTAATAATTAAAAATAA
90492331 TTTAAT-ATTAAAA
1 TTTAATAATTAAAA
90492344 TTGGGCTGGG
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TTTAATAATTAAAAATAA
Found at i:90493202 original size:38 final size:38
Alignment explanation
Indices: 90493159--90493233 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
90493149 TTTCAAATTA
90493159 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTG
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTG
* *
90493197 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGT
90493234 TAATGAATCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTG
Found at i:90493384 original size:48 final size:47
Alignment explanation
Indices: 90493204--90493370 Score: 253
Period size: 47 Copynumber: 3.5 Consensus size: 47
90493194 GTGACATGTT
90493204 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
90493251 TAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
** * * *
90493298 TAACCGTGACATATCCACTTACCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
**
90493346 TAATTGTGGTATATCCACTTAGCAC
1 TAACCGTGGTATATCCACTTAGCAC
90493371 TACATTACAT
Statistics
Matches: 107, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 74 0.69
48 33 0.31
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.31
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:90494959 original size:27 final size:27
Alignment explanation
Indices: 90494929--90495106 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
90494919 ATATTGAGCC
* *
90494929 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
90494956 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
90494983 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
90495011 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
90495038 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
90495065 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
90495092 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90495107 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:90495068 original size:82 final size:81
Alignment explanation
Indices: 90494950--90495105 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
90494940 TGCTATATAA
* * *
90494950 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
90495015 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
90495032 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
90495096 CACTTAGTGC
65 CACTTAGTGC
90495106 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:90498169 original size:51 final size:51
Alignment explanation
Indices: 90498051--90498181 Score: 183
Period size: 51 Copynumber: 2.5 Consensus size: 51
90498041 ATCGGGATGT
* * *
90498051 TACAAGTGTGGTACTATGTGAAGGGCACTTTGTGAAGAAATATAGCTTTGG
1 TACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGC
*
90498102 TCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTTGAC
1 T-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTG-C
* *
90498154 TACAAGGGTGGTACTATGTGCAGGCCAC
1 TACAAGTGTGGTACTATGTGAAGGCCAC
90498182 CGGGTATCCG
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
51 36 0.50
52 36 0.50
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (51 bp):
TACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGC
Found at i:90501795 original size:27 final size:27
Alignment explanation
Indices: 90501765--90501942 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
90501755 ATATCGAGCC
* * *
90501765 CGCACACTCAGTGCTATAAAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
90501792 CGCACACTTAGTGCCACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
90501819 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
90501847 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
90501874 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
90501901 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
90501928 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90501943 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:90501878 original size:82 final size:81
Alignment explanation
Indices: 90501786--90501941 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
90501776 TGCTATAAAA
*
90501786 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
90501850 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
90501868 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
90501933 ACTTAGTGC
66 ACTTAGTGC
90501942 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.25
82 51 0.75
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:90511599 original size:25 final size:25
Alignment explanation
Indices: 90511565--90511616 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
90511555 CCAGCATGGA
90511565 GAAGAAAATGAGCTGATTTTAGCTT
1 GAAGAAAATGAGCTGATTTTAGCTT
90511590 GAAGAAAATGAGCTGATTTTAGCTT
1 GAAGAAAATGAGCTGATTTTAGCTT
90511615 GA
1 GA
90511617 TTTTTTCCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.31
Consensus pattern (25 bp):
GAAGAAAATGAGCTGATTTTAGCTT
Found at i:90527544 original size:40 final size:40
Alignment explanation
Indices: 90527496--90527722 Score: 400
Period size: 40 Copynumber: 5.7 Consensus size: 40
90527486 GCAAACACAT
* *
90527496 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
90527536 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
90527576 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
90527616 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
90527656 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
90527696 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
90527723 ATCCAATGCT
Statistics
Matches: 177, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:90535945 original size:40 final size:40
Alignment explanation
Indices: 90535867--90536091 Score: 400
Period size: 40 Copynumber: 5.7 Consensus size: 40
90535857 GCAAACACAT
* *
90535867 TTGCCTTCGGGTCTTAACCC-GACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
90535906 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
90535946 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
90535986 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
90536025 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
90536065 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
90536092 ATCCAATGCT
Statistics
Matches: 178, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 58 0.33
40 120 0.67
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:90536030 original size:79 final size:80
Alignment explanation
Indices: 90535867--90536091 Score: 409
Period size: 79 Copynumber: 2.8 Consensus size: 80
90535857 GCAAACACAT
* *
90535867 TTGCCTTCGGGTCTTAACCC-GACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
90535931 TATCATCTCGCATAA
66 TATCATCTCGCATAA
*
90535946 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
90536011 TATCA-CTCGCATAA
66 TATCATCTCGCATAA
90536025 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
90536090 TA
66 TA
90536092 ATCCAATGCT
Statistics
Matches: 141, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
79 93 0.66
80 48 0.34
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (80 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCATCTCGCATAA
Found at i:90536083 original size:119 final size:119
Alignment explanation
Indices: 90535867--90536091 Score: 398
Period size: 119 Copynumber: 1.9 Consensus size: 119
90535857 GCAAACACAT
90535867 TTGCCTTCGGGTCTTAACCCGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
1 TTGCCTTCGGGTCTTAACCCGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
*
90535932 ATCATCTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
66 ATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
* *
90535986 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAACCC-GACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
*
90536050 TATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATA
65 TATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATA
90536092 ATCCAATGCT
Statistics
Matches: 101, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
119 94 0.93
120 7 0.07
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (119 bp):
TTGCCTTCGGGTCTTAACCCGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
ATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
Found at i:90541646 original size:48 final size:48
Alignment explanation
Indices: 90541591--90541704 Score: 201
Period size: 48 Copynumber: 2.4 Consensus size: 48
90541581 CGAGTTGCTA
*
90541591 ATTTGGCTTCGGGCCATGATATCATTACTTCGGATATAAGCTACCTTG
1 ATTTGGCTTCGGGCCATGATATCAGTACTTCGGATATAAGCTACCTTG
* *
90541639 ATTTGGCTTCGAGCCATGATATCAGTATTTCGGATATAAGCTACCTTG
1 ATTTGGCTTCGGGCCATGATATCAGTACTTCGGATATAAGCTACCTTG
90541687 ATTTGGCTTCGGGCCATG
1 ATTTGGCTTCGGGCCATG
90541705 GTATAGGTGC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (48 bp):
ATTTGGCTTCGGGCCATGATATCAGTACTTCGGATATAAGCTACCTTG
Found at i:90543467 original size:27 final size:26
Alignment explanation
Indices: 90543419--90543478 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
90543409 GTGAGGCTAC
*
90543419 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
90543446 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
90543472 CAAATAT
1 CAGATAT
90543479 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:90543493 original size:2 final size:2
Alignment explanation
Indices: 90543488--90543513 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
90543478 TATATATATA
90543488 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
90543514 GCGAAGCCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:90544219 original size:27 final size:27
Alignment explanation
Indices: 90544182--90544430 Score: 311
Period size: 27 Copynumber: 9.2 Consensus size: 27
90544172 GGGCAAAATG
* * * *
90544182 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
90544209 GTATTTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
90544236 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
90544263 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
90544290 ATAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
90544317 GTAATTCTACCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
90544344 GTAATTCTACACTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
90544371 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
90544397 GATAATTCTACCCTACAGGGGCATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
90544425 ATAATT
1 GTAATT
90544431 TTGTAAATCG
Statistics
Matches: 191, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 190 0.99
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:90544526 original size:27 final size:27
Alignment explanation
Indices: 90544450--90544695 Score: 212
Period size: 27 Copynumber: 9.1 Consensus size: 27
90544440 GATGGTAAAA
* * * *
90544450 TGGTAATTCTATAAATCGGGGGTACTT
1 TGGTAATTTTACAAATCGAGGGTATTT
* *
90544477 TGGCAATTTTCACAAGTCGAGGGTATTT
1 TGGTAATTTT-ACAAATCGAGGGTATTT
**
90544505 CAGTAATTTTACAAATCGAGGGTATTT
1 TGGTAATTTTACAAATCGAGGGTATTT
*** *
90544532 CAATAATTTTTCAAA-CTGAGGGTATTT
1 TGGTAATTTTACAAATC-GAGGGTATTT
* *
90544559 CGGTAATTTAACAAATC-AGGAGTATTT
1 TGGTAATTTTACAAATCGAGG-GTATTT
* * *
90544586 TGGTAATTTTACAAACCAAAGGTATTT
1 TGGTAATTTTACAAATCGAGGGTATTT
*
90544613 TGGTAATTTTACAAAT-TAGGGGTATTT
1 TGGTAATTTTACAAATCGA-GGGTATTT
** * *
90544640 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTACAAATCGAGGGTATTT
*
90544667 TGGTAATTTTACAAA-CTAGGGGTATTT
1 TGGTAATTTTACAAATCGA-GGGTATTT
90544694 TG
1 TG
90544696 ATATTTTTGT
Statistics
Matches: 181, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
26 7 0.04
27 150 0.83
28 24 0.13
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
TGGTAATTTTACAAATCGAGGGTATTT
Found at i:90544717 original size:26 final size:26
Alignment explanation
Indices: 90544580--90544718 Score: 116
Period size: 27 Copynumber: 5.2 Consensus size: 26
90544570 CAAATCAGGA
**
90544580 GTATTTTGGTAATTTTACAAACCAAAG
1 GTATTTTGGTAATTTTGTAAACC-AAG
** ** *
90544607 GTATTTTGGTAATTTTACAAATTAGGG
1 GTATTTTGGTAATTTTGTAAACCA-AG
90544634 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTGTAAACCAA-G
** * *
90544661 GTATTTTGGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTGTAAACCA-AG
* * *
90544688 GTATTTTGATATTTTTGTAAACCAAA
1 GTATTTTGGTAATTTTGTAAACCAAG
90544714 GTATT
1 GTATT
90544719 CTAAACAGGG
Statistics
Matches: 90, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
26 6 0.07
27 84 0.93
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GTATTTTGGTAATTTTGTAAACCAAG
Found at i:90546377 original size:27 final size:28
Alignment explanation
Indices: 90546346--90546451 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 28
90546336 CTGCCAGAAT
*
90546346 AGATA-TTGTGACAGAGTCACCAGATAC
1 AGATATTTGTGACAGAGCCACCAGATAC
* *
90546373 AGATA-TTGTGACACAGCCACCAGATAT
1 AGATATTTGTGACAGAGCCACCAGATAC
**
90546400 AGATATTTGTGGTAGAGCCACCAGAT-C
1 AGATATTTGTGACAGAGCCACCAGATAC
*
90546427 AGATATTTGTGGCAGAGCCACCAGA
1 AGATATTTGTGACAGAGCCACCAGA
90546452 ACGCTTCCTC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
27 53 0.76
28 17 0.24
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.23
Consensus pattern (28 bp):
AGATATTTGTGACAGAGCCACCAGATAC
Found at i:90546422 original size:55 final size:53
Alignment explanation
Indices: 90546339--90546452 Score: 149
Period size: 55 Copynumber: 2.1 Consensus size: 53
90546329 AGTATGGCTG
*
90546339 CCAGAATAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGACACAGCCA
1 CCAGAATAGATATTGTGACAGAGCCACCAGAT-CAGATATTTGTGACACAGCCA
** * *
90546392 CCAGATATAGATATTTGTGGTAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGA-ATAGATA-TTGTGACAGAGCCACCAGATCAGATATTTGTGACACAGCCA
90546447 CCAGAA
1 CCAGAA
90546453 CGCTTCCTCC
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
53 5 0.09
54 14 0.26
55 34 0.64
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (53 bp):
CCAGAATAGATATTGTGACAGAGCCACCAGATCAGATATTTGTGACACAGCCA
Found at i:90546604 original size:27 final size:26
Alignment explanation
Indices: 90546561--90546618 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
90546551 TAACCTTAGA
*
90546561 GGTATAATGGTAATTTTGCACCTAGG
1 GGTATAATGGTAATTTTACACCTAGG
* *
90546587 GGTATAATGGTAATTTTTATACTTAGG
1 GGTATAATGGTAA-TTTTACACCTAGG
90546614 GGTAT
1 GGTAT
90546619 TTTAGTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 13 0.46
27 15 0.54
ACGTcount: A:0.28, C:0.07, G:0.26, T:0.40
Consensus pattern (26 bp):
GGTATAATGGTAATTTTACACCTAGG
Found at i:90550363 original size:28 final size:28
Alignment explanation
Indices: 90550290--90550392 Score: 124
Period size: 27 Copynumber: 3.8 Consensus size: 28
90550280 GGCTGCCAAA
* * *
90550290 ACAGATA-TTGTGACAGAGTCA-CTGAT
1 ACAGATATTTGTGGCAGAGCCACCAGAT
*
90550316 ACAGATA-TTGTTGCAGAGCCACCAGAT
1 ACAGATATTTGTGGCAGAGCCACCAGAT
* *
90550343 ATAGATATTTGTGGTAGAGCCACCAGAT
1 ACAGATATTTGTGGCAGAGCCACCAGAT
90550371 -CAGATATTTGTGGCAGAGCCAC
1 ACAGATATTTGTGGCAGAGCCAC
90550393 TGAATGCTCC
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.27
27 30 0.45
28 18 0.27
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (28 bp):
ACAGATATTTGTGGCAGAGCCACCAGAT
Found at i:90553829 original size:21 final size:20
Alignment explanation
Indices: 90553805--90553843 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
90553795 GAGTATTTTG
90553805 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
90553826 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
90553844 ATAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:90560585 original size:25 final size:26
Alignment explanation
Indices: 90560542--90560612 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
90560532 CTGTTTTAAT
90560542 AACTGGGGC-AAAGCCCTTTT-GATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
* *
90560566 AACTGGGGCAAAAGCCCTTTTCGGTG
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
90560592 AATTGGGGCAAAAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
90560613 TGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
24 9 0.21
25 11 0.26
26 22 0.52
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGATA
Found at i:90563135 original size:83 final size:80
Alignment explanation
Indices: 90562996--90563183 Score: 241
Period size: 83 Copynumber: 2.3 Consensus size: 80
90562986 CGGATGATAT
* * * * *
90562996 CCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
* *
90563061 TGCGAGTAGTTGCTATAC
66 TAC--G-AGTTACTATAC
* * *
90563079 CCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
*
90563144 TACGAGTTACTATAT
66 TACGAGTTACTATAC
*
90563159 CCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
90563184 TGCGAGTTGC
Statistics
Matches: 92, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 32 0.35
81 1 0.01
83 59 0.64
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
TACGAGTTACTATAC
Found at i:90563199 original size:40 final size:40
Alignment explanation
Indices: 90562992--90563216 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
90562982 TATTCGGATG
* * *
90562992 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
90563032 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCT
* * * *
90563075 ATACCCGGGCTAAGTCCTGAAGGCATTTGCGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
* * * * *
90563115 ATTTCCGGGCTAAGACCCGAAGGCATGTGTACGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* *
90563155 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* * *
90563195 ATAT-CTGACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
90563217 TACTTGGTTT
Statistics
Matches: 153, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.10
40 101 0.66
41 1 0.01
43 35 0.23
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
Found at i:90563995 original size:16 final size:18
Alignment explanation
Indices: 90563959--90563995 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
90563949 AAAATCACTA
90563959 TAAATAGTAGGAATGAAAT
1 TAAATAGTA-GAATGAAAT
90563978 TAAATAGT-GAAT-AAAT
1 TAAATAGTAGAATGAAAT
90563994 TA
1 TA
90563996 TGTAATCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
19 8 0.44
ACGTcount: A:0.54, C:0.00, G:0.16, T:0.30
Consensus pattern (18 bp):
TAAATAGTAGAATGAAAT
Found at i:90569830 original size:13 final size:13
Alignment explanation
Indices: 90569814--90569851 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
90569804 CAATCTCATA
90569814 TCTCAATTTCAAT
1 TCTCAATTTCAAT
90569827 TCTCAA-TTCAATT
1 TCTCAATTTCAA-T
90569840 TCTC-ATTTCAAT
1 TCTCAATTTCAAT
90569852 CCAATAGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (13 bp):
TCTCAATTTCAAT
Found at i:90569839 original size:18 final size:19
Alignment explanation
Indices: 90569801--90569841 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
90569791 TGGTTCATGT
90569801 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
90569820 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
90569838 TTTC
1 TTTC
90569842 TCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:90570071 original size:23 final size:22
Alignment explanation
Indices: 90570003--90570087 Score: 93
Period size: 21 Copynumber: 3.9 Consensus size: 22
90569993 CCTGATCAGT
* *
90570003 ATACGACACATAAAGTGCCTAA
1 ATACGACACATGAGGTGCCTAA
*
90570025 A-ACGACACATGAGGTGCCT-G
1 ATACGACACATGAGGTGCCTAA
*
90570045 ATACGACACACGAGGTGCCTAAA
1 ATACGACACATGAGGTGCCT-AA
* *
90570068 ATACGACACATAAAGTGCCT
1 ATACGACACATGAGGTGCCT
90570088 GATCGATAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
20 1 0.02
21 33 0.63
22 1 0.02
23 17 0.33
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (22 bp):
ATACGACACATGAGGTGCCTAA
Found at i:90570089 original size:44 final size:42
Alignment explanation
Indices: 90570003--90570090 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 42
90569993 CCTGATCAGT
* * *
90570003 ATACGACACATAAAGTGCCTAAAACGACACATGAGGTGCCTG
1 ATACGACACACAAAGTGCCTAAAACGACACATAAAGTGCCTG
* *
90570045 ATACGACACACGAGGTGCCTAAAATACGACACATAAAGTGCCTG
1 ATACGACACACAAAGTGCCT-AAA-ACGACACATAAAGTGCCTG
90570089 AT
1 AT
90570091 CGATAAAGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 17 0.44
43 3 0.08
44 19 0.49
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (42 bp):
ATACGACACACAAAGTGCCTAAAACGACACATAAAGTGCCTG
Found at i:90573824 original size:28 final size:28
Alignment explanation
Indices: 90573792--90573868 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
90573782 TGTCGTTGAT
* *
90573792 TACTCAATACCTCGCACACTAAGTGCCA
1 TACTCGATATCTCGCACACTAAGTGCCA
* *
90573820 TACTCGATATCTCGCACAATAAGTTCCA
1 TACTCGATATCTCGCACACTAAGTGCCA
* *
90573848 GACTCGATATCTTGCACACTA
1 TACTCGATATCTCGCACACTA
90573869 GGTGTCGTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (28 bp):
TACTCGATATCTCGCACACTAAGTGCCA
Found at i:90573925 original size:39 final size:40
Alignment explanation
Indices: 90573879--90573961 Score: 114
Period size: 39 Copynumber: 2.1 Consensus size: 40
90573869 GGTGTCGTAC
90573879 ATAGCTGAAGCCATCTCAAATCGCACACTAA-TCCCATAT
1 ATAGCTGAAGCCATCTCAAATCGCACACTAAGTCCCATAT
* * * * *
90573918 ATAGCTGAAGCTATGTCGAATTGCACACTAAGTGCCATAT
1 ATAGCTGAAGCCATCTCAAATCGCACACTAAGTCCCATAT
90573958 ATAG
1 ATAG
90573962 TCGATTTGTC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
39 27 0.71
40 11 0.29
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (40 bp):
ATAGCTGAAGCCATCTCAAATCGCACACTAAGTCCCATAT
Found at i:90577703 original size:25 final size:25
Alignment explanation
Indices: 90577661--90577709 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
90577651 CTTTATTATT
* *
90577661 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
90577686 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
90577710 GGTCCTCTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:90583016 original size:40 final size:40
Alignment explanation
Indices: 90582949--90583100 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
90582939 ATAACCACAA
* * * * * *
90582949 GCACAATTGCCTTTGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATATCAACTC
* *
90582989 GTACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATATCAACTC
* *
90583029 GCACAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGAT-ATATCAACTC
*
90583069 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGACTTAGCCCGGATAT
90583101 CATTCAAATG
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 94 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATATCAACTC
Found at i:90588623 original size:56 final size:56
Alignment explanation
Indices: 90588560--90588694 Score: 171
Period size: 56 Copynumber: 2.4 Consensus size: 56
90588550 CCATGGCATT
* * * * *
90588560 GATATATGTATGGGAGTAATACCACGTTTAATACATTAGCATCAATATGTGATTCC
1 GATATATGTGTGCGAGTAAGACCACATTTAATACACTAGCATCAATATGTGATTCC
* * * * **
90588616 GATATATGTGTGCGAGTAAGATCACATTTAATACGCTGGCATCGATATGTGATTTT
1 GATATATGTGTGCGAGTAAGACCACATTTAATACACTAGCATCAATATGTGATTCC
90588672 GATATATGTGTGCGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
90588695 CTGTTTGGGA
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.33
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACATTTAATACACTAGCATCAATATGTGATTCC
Found at i:90827029 original size:29 final size:28
Alignment explanation
Indices: 90826966--90827031 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
90826956 TAATCAACCG
90826966 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACAC-TAGTGCCATGCACTTTAAACT
* **
90826995 CACACACTAGTGCCAATGCA-TTTCAAGTT
1 CGCACACTAGTGCC-ATGCACTTT-AAACT
90827024 CGCACACT
1 CGCACACT
90827032 TACCTTTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTAGTGCCATGCACTTTAAACT
Found at i:90827164 original size:173 final size:174
Alignment explanation
Indices: 90826856--90827181 Score: 541
Period size: 173 Copynumber: 1.9 Consensus size: 174
90826846 AACTCAAGGT
* *
90826856 ACTTACTTTTCCGCGTTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAG
1 ACTTACTTTTCCGCGTTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG
* *
90826921 AAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCA
66 AAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCAATGCA
90826986 CTTTAAACTCACACAC-TAGTGCCAATGCATTTCAAGTTCGCAC
131 CTTTAAACTCACACACTTAGTGCCAATGCATTTCAAGTTCGCAC
* *
90827029 ACTTACCTTTTCTGC-TGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTAT
1 ACTTA-CTTTTCCGCGT-TCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTAT
90827093 AG-AAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCAATG
64 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCAATG
* *
90827157 TACTTTAAACTCGCACACTTAGTGC
129 CACTTTAAACTCACACACTTAGTGC
90827182 TGTACAATTA
Statistics
Matches: 142, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
173 82 0.58
174 60 0.42
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACTTTTCCGCGTTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG
AAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCAATGCA
CTTTAAACTCACACACTTAGTGCCAATGCATTTCAAGTTCGCAC
Found at i:90827201 original size:28 final size:28
Alignment explanation
Indices: 90827134--90827209 Score: 100
Period size: 28 Copynumber: 2.6 Consensus size: 28
90827124 CTTAATAATC
*
90827134 AACCACGCACACTTAGTGCAATGTACTTTA
1 AACC-CGCACACTTAGTGC-ATGTACATTA
*
90827164 AACTCGCACACTTAGTGC-TGTACAATTA
1 AACCCGCACACTTAGTGCATGTAC-ATTA
90827192 AACCCGCACACTTAGTGC
1 AACCCGCACACTTAGTGC
90827210 CAATCTCATG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 5 0.12
28 20 0.48
29 14 0.33
30 3 0.07
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
AACCCGCACACTTAGTGCATGTACATTA
Found at i:90829307 original size:40 final size:40
Alignment explanation
Indices: 90829221--90829300 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
90829211 AGCCCGCAGA
* **
90829221 TACTA-AATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGT
1 TACTATAA-CCGGGCTAAGTCCCGAAGGCAATTGAACGAGT
* *
90829261 TACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TACTATAACCGGGCTAAGTCCCGAAGGCAATTGAACGAGT
90829301 AGCTATATCC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 32 0.94
41 2 0.06
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TACTATAACCGGGCTAAGTCCCGAAGGCAATTGAACGAGT
Found at i:90830985 original size:26 final size:26
Alignment explanation
Indices: 90830949--90831001 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
90830939 TGACGCCAAG
90830949 ACAGGGTTCGAGGCATTACAGGACTA
1 ACAGGGTTCGAGGCATTACAGGACTA
90830975 ACAGGGTTCGAGGCATTACAGGACTA
1 ACAGGGTTCGAGGCATTACAGGACTA
90831001 A
1 A
90831002 AACATAAGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.19, G:0.30, T:0.19
Consensus pattern (26 bp):
ACAGGGTTCGAGGCATTACAGGACTA
Found at i:90842659 original size:13 final size:13
Alignment explanation
Indices: 90842641--90842695 Score: 60
Period size: 12 Copynumber: 4.2 Consensus size: 13
90842631 TTTGAGTCCA
90842641 TTTATTTTTTTAT
1 TTTATTTTTTTAT
90842654 TTTA-TTTTTTAT
1 TTTATTTTTTTAT
* *
90842666 TTT-TGTTTTTAC
1 TTTATTTTTTTAT
90842678 TTTACTTTTATTTAT
1 TTTA-TTTT-TTTAT
90842693 TTT
1 TTT
90842696 TTGAAGACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 20 0.59
13 4 0.12
14 3 0.09
15 7 0.21
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.80
Consensus pattern (13 bp):
TTTATTTTTTTAT
Found at i:90847510 original size:42 final size:42
Alignment explanation
Indices: 90847454--90847556 Score: 106
Period size: 42 Copynumber: 2.5 Consensus size: 42
90847444 AATGCCAACG
*
90847454 TCCCAGAC-GTGGTCTTACA-TATAATC-AATATCGATGCC-ACTA
1 TCCCAGACAG-GGTCTTACACGA-AATCAAATA-CGATGCCTA-TA
* *
90847496 TCCTAGACAGGGTCTTACACGAAATCAAATACGATGCCTATG
1 TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCTATA
*
90847538 TCCCAGACATGGTCTTACA
1 TCCCAGACAGGGTCTTACA
90847557 AGTAAATCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
42 45 0.87
43 7 0.13
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCTATA
Found at i:90849902 original size:43 final size:43
Alignment explanation
Indices: 90849854--90849975 Score: 174
Period size: 43 Copynumber: 2.8 Consensus size: 43
90849844 ATCATATAAC
*
90849854 AATGCCAATGTCCCAGACATTGTCTTACACGTAATCGC-ATAAT
1 AATGCCAATGTCCCAGACATGGTCTTACACGTAATCGCAAT-AT
* * *
90849897 GATGCCAATGTCCCAGACATGGTCTTACTCATAATCGCAATAT
1 AATGCCAATGTCCCAGACATGGTCTTACACGTAATCGCAATAT
* *
90849940 AATGCCAATGTCCCAGACATGGTCTTATATGTAATC
1 AATGCCAATGTCCCAGACATGGTCTTACACGTAATC
90849976 TCATCTAGGT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 67 0.97
44 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (43 bp):
AATGCCAATGTCCCAGACATGGTCTTACACGTAATCGCAATAT
Found at i:90850268 original size:24 final size:24
Alignment explanation
Indices: 90850240--90850287 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
90850230 GAATCTCAAT
90850240 TTTCTCAATCTATATAATAACAAA
1 TTTCTCAATCTATATAATAACAAA
90850264 TTTCTCAATCTATATAATAACAAA
1 TTTCTCAATCTATATAATAACAAA
90850288 ATTTACTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.38
Consensus pattern (24 bp):
TTTCTCAATCTATATAATAACAAA
Found at i:90859291 original size:46 final size:45
Alignment explanation
Indices: 90859238--90859406 Score: 171
Period size: 46 Copynumber: 3.7 Consensus size: 45
90859228 GCATCCAAAC
* *
90859238 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAAT
1 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGAGT
*** * * *
90859284 TCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCCGAGC
1 TCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCGAGT
*
90859331 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGT
1 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGAGT
**
90859377 TCGTTGAGTTGAGTTTGAGTTCACTTATGG
1 TCGTTGAGTTGAGTCCGAGTTCACTTATGG
90859407 GCGGGTTACA
Statistics
Matches: 99, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 59 0.60
47 30 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (45 bp):
TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCGAGT
Found at i:90861180 original size:3 final size:3
Alignment explanation
Indices: 90861172--90861196 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
90861162 TAAGAACTCT
90861172 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
90861197 GAAGAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:90875789 original size:47 final size:47
Alignment explanation
Indices: 90875728--90875846 Score: 213
Period size: 47 Copynumber: 2.5 Consensus size: 47
90875718 AGTGAACGCA
90875728 GACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCG
1 GACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCG
*
90875775 GACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCATGAACTCG
1 GACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCG
90875822 GACTTC-ACTCAACGAGTTCGGATGC
1 GAC-TCAACTCAACGAGTTCGGATGC
90875847 TCAACCATCC
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
47 68 0.97
48 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (47 bp):
GACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCG
Found at i:90876300 original size:30 final size:30
Alignment explanation
Indices: 90876266--90876325 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
90876256 ATTTAATACG
90876266 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
90876296 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
90876326 GGCTCGGGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:90883808 original size:30 final size:30
Alignment explanation
Indices: 90883785--90883863 Score: 158
Period size: 30 Copynumber: 2.6 Consensus size: 30
90883775 ACTTTAAAAA
90883785 AATTACACTTTTGCCCCTAAACTTTTGCAT
1 AATTACACTTTTGCCCCTAAACTTTTGCAT
90883815 AATTACACTTTTGCCCCTAAACTTTTGCAT
1 AATTACACTTTTGCCCCTAAACTTTTGCAT
90883845 AATTACACTTTTGCCCCTA
1 AATTACACTTTTGCCCCTA
90883864 GGCTGGGGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.27, C:0.28, G:0.06, T:0.39
Consensus pattern (30 bp):
AATTACACTTTTGCCCCTAAACTTTTGCAT
Found at i:90883810 original size:14 final size:14
Alignment explanation
Indices: 90883791--90883842 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
90883781 AAAAAATTAC
90883791 ACTTTTGCCCCTAA
1 ACTTTTGCCCCTAA
*** *
90883805 ACTTTTGCATAATTAC
1 ACTTTTGC--CCCTAA
90883821 ACTTTTGCCCCTAA
1 ACTTTTGCCCCTAA
90883835 ACTTTTGC
1 ACTTTTGC
90883843 ATAATTACAC
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 18 0.64
16 10 0.36
ACGTcount: A:0.23, C:0.29, G:0.08, T:0.40
Consensus pattern (14 bp):
ACTTTTGCCCCTAA
Found at i:90883826 original size:16 final size:16
Alignment explanation
Indices: 90883805--90883858 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
90883795 TTGCCCCTAA
90883805 ACTTTTGCATAATTAC
1 ACTTTTGCATAATTAC
*** *
90883821 ACTTTTGC--CCCTAA
1 ACTTTTGCATAATTAC
90883835 ACTTTTGCATAATTAC
1 ACTTTTGCATAATTAC
90883851 ACTTTTGC
1 ACTTTTGC
90883859 CCCTAGGCTG
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 10 0.36
16 18 0.64
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (16 bp):
ACTTTTGCATAATTAC
Found at i:90893196 original size:21 final size:21
Alignment explanation
Indices: 90893170--90893209 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
90893160 CTTTTTATTC
90893170 TTATTTTATT-TATTTATTTAT
1 TTATTTTATTAT-TTTATTTAT
90893191 TTATTTTATTATTTTATTT
1 TTATTTTATTATTTTATTT
90893210 TGAAAGACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (21 bp):
TTATTTTATTATTTTATTTAT
Found at i:90896106 original size:13 final size:13
Alignment explanation
Indices: 90896090--90896122 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
90896080 TTTAATTAAA
*
90896090 TTAGTTAATTAGT
1 TTAGATAATTAGT
90896103 TTAGATAATTAGT
1 TTAGATAATTAGT
90896116 TTA-ATAA
1 TTAGATAA
90896123 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:90910389 original size:3 final size:3
Alignment explanation
Indices: 90910366--90910417 Score: 72
Period size: 3 Copynumber: 17.7 Consensus size: 3
90910356 TCTTTTAAAA
*
90910366 ATT A-T ATT -TT ATT ATAC ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
90910410 ATT ATT AT
1 ATT ATT AT
90910418 ACCTTACACA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
2 4 0.09
3 38 0.86
4 2 0.05
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:90911265 original size:131 final size:129
Alignment explanation
Indices: 90911030--90911280 Score: 308
Period size: 131 Copynumber: 1.9 Consensus size: 129
90911020 TACCTATTCA
* *
90911030 TTTAAAAATTTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTCGAGAATCGTGCCCTATCAT
1 TTTAAAAATTTTCAAAACGAAGGCAATACTCGATGGTTGGCAATTCGAGAATCGTGCCCTATCAT
* * * * ** *
90911095 GCTGGGTTACGATTTCCTGTTTGTTCAATACAATTGAATATTCCTTTGGAATTTCTCTTATTTC
66 ACTAGGTTACGATCTCCTGTTTGTCCAATACAACCGAATATTCCTTTAGAATTTCTCTTATTTC
* ** *
90911159 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGGTTGGCAATTCGGGGAATCGTGCCCTAT-
1 TTTAAAAATT-TTCAAAACGAAGGCAATACTCGATGGTTGGCAATTC-GAGAATCGTGCCCTATC
* * *
90911223 AGTACTAGGTTGCGATCTCTTGTTTGCTCCAA-ATAACCGAATATTCCTTTAGAATTTC
64 A-TACTAGGTTACGATCTCCTGTTTG-TCCAATACAACCGAATATTCCTTTAGAATTTC
90911281 ACTCATTCTG
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
129 10 0.10
130 32 0.31
131 56 0.55
132 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (129 bp):
TTTAAAAATTTTCAAAACGAAGGCAATACTCGATGGTTGGCAATTCGAGAATCGTGCCCTATCAT
ACTAGGTTACGATCTCCTGTTTGTCCAATACAACCGAATATTCCTTTAGAATTTCTCTTATTTC
Found at i:90918499 original size:31 final size:31
Alignment explanation
Indices: 90918423--90918491 Score: 138
Period size: 31 Copynumber: 2.2 Consensus size: 31
90918413 TTACTTTCGG
90918423 ATTCTTTTGTTCTTCGAACATTCTTCTAAAT
1 ATTCTTTTGTTCTTCGAACATTCTTCTAAAT
90918454 ATTCTTTTGTTCTTCGAACATTCTTCTAAAT
1 ATTCTTTTGTTCTTCGAACATTCTTCTAAAT
90918485 ATTCTTT
1 ATTCTTT
90918492 CATTCTTCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.54
Consensus pattern (31 bp):
ATTCTTTTGTTCTTCGAACATTCTTCTAAAT
Found at i:90926442 original size:40 final size:40
Alignment explanation
Indices: 90926344--90926606 Score: 359
Period size: 40 Copynumber: 6.5 Consensus size: 40
90926334 TTCAGATGAT
* * *
90926344 ATCCGGGCTAAGTCCCGAAGCCATTTGTGCGAGTAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTGACTAC
90926387 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAC
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAC
*
90926427 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTAC
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAC
*
90926467 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTAC
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAC
* * *
90926507 ATCCGGGATAAGTCCCGAAGGCATTTGTGCTAGTGAATAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAC
* * * *
90926547 ATCCGGGCTAAGACCCGAAGACATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAC
*
90926587 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
90926607 TACTTGGGTT
Statistics
Matches: 204, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
39 13 0.06
40 160 0.78
41 2 0.01
43 29 0.14
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAC
Found at i:90928213 original size:23 final size:23
Alignment explanation
Indices: 90928191--90928232 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
90928181 TTAAAAATTA
90928191 TATT-TTA-TTATACATTATAAT
1 TATTATTATTTATACATTATAAT
*
90928212 TATTATTATTTATACCTTATA
1 TATTATTATTTATACATTATA
90928233 CATAATCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 3 0.17
23 11 0.61
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (23 bp):
TATTATTATTTATACATTATAAT
Found at i:90931604 original size:79 final size:80
Alignment explanation
Indices: 90931424--90931607 Score: 284
Period size: 79 Copynumber: 2.3 Consensus size: 80
90931414 CAAATCCAAT
* *
90931424 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGACTT
1 CACCAGCACAAAGCCTGCGGGACTTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGACTT
90931489 TAGCCCCGGATATAA
66 TAGCCCCGGATATAA
*
90931504 TACCAGCACAAAGCCTGCGGGACTTT-AGCCCGGATATAATACCAGCACAAATGCCTGCGGGACT
1 CACCAGCACAAAGCCTGCGGGACTTTAAGCCCGGATATAATACCAGCACAAA-GCCTGCGGGACT
90931568 TT-G-CCCGGATATAA
65 TTAGCCCCGGATATAA
* *
90931582 CACCAGCACGAATGCCTTCGGGACTT
1 CACCAGCAC-AAAGCCTGCGGGACTT
90931608 AACCCAAATA
Statistics
Matches: 96, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
78 19 0.20
79 40 0.42
80 37 0.39
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (80 bp):
CACCAGCACAAAGCCTGCGGGACTTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGACTT
TAGCCCCGGATATAA
Found at i:90931619 original size:39 final size:39
Alignment explanation
Indices: 90931425--90931607 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 39
90931415 AAATCCAATC
* *
90931425 ACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGACTTT-AGCCCGGATATAAT
90931465 ACCAGCACAAAGCCTGCGGGACTTTAGCCCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGACTTTAG-CCCGGATATAAT
90931505 ACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAAT
*
90931544 ACCAGCACAAATGCCTGCGGGACTTT-GCCCGGATATAAC
1 ACCAGCACAAA-GCCTGCGGGACTTTAGCCCGGATATAAT
* *
90931583 ACCAGCACGAATGCCTTCGGGACTT
1 ACCAGCAC-AAAGCCTGCGGGACTT
90931608 AACCCAAATA
Statistics
Matches: 135, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
39 57 0.42
40 78 0.58
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (39 bp):
ACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAAT
Found at i:90936997 original size:39 final size:39
Alignment explanation
Indices: 90936917--90937110 Score: 248
Period size: 39 Copynumber: 4.9 Consensus size: 39
90936907 AAATCCAATC
* * *
90936917 ACCACCACAAAGCATGCGGGACTTTAAGCCCAGATATAAT
1 ACCAGCACAAAGCCTGCGGGACTTT-AGCCCGGATATAAT
*
90936957 ACTAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAAT
* * *
90936996 ACCAGTACAAAGCCTGTGGGACTTTAGCCCAGATATAAT
1 ACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAAT
*
90937035 ACCAGCACAAATGCCTGCGGGACTTT-GCCCGGATATAAC
1 ACCAGCACAAA-GCCTGCGGGACTTTAGCCCGGATATAAT
* * *
90937074 ACCAGCACGAATGCCTTCGGGAC-TTAACCCGGATATA
1 ACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATA
90937111 TATTATATCG
Statistics
Matches: 136, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
38 2 0.01
39 97 0.71
40 37 0.27
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (39 bp):
ACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAAT
Found at i:90959898 original size:35 final size:35
Alignment explanation
Indices: 90959844--90959945 Score: 143
Period size: 35 Copynumber: 2.9 Consensus size: 35
90959834 GTCCACACGA
* *
90959844 CCTGTGACACAGGCATGTCTTTGGTCATGTAACGG
1 CCTGTGACACGGGCGTGTCTTTGGTCATGTAACGG
*
90959879 CCTGTGACACGGGCGTGTCTTTGG-CTGTGTAACGG
1 CCTGTGACACGGGCGTGTCTTTGGTC-ATGTAACGG
* *
90959914 CCTGTGACACGAGTGTGTCTTTGGTCATGTAA
1 CCTGTGACACGGGCGTGTCTTTGGTCATGTAA
90959946 GACACACAGC
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
34 1 0.02
35 57 0.97
36 1 0.02
ACGTcount: A:0.17, C:0.22, G:0.31, T:0.30
Consensus pattern (35 bp):
CCTGTGACACGGGCGTGTCTTTGGTCATGTAACGG
Found at i:90963701 original size:50 final size:50
Alignment explanation
Indices: 90963647--90963761 Score: 142
Period size: 50 Copynumber: 2.3 Consensus size: 50
90963637 CTATTCATTT
* * *
90963647 GGCCGAATATGCAAG-ACCAAGAATAATATCACATATGTACATATCTATAA
1 GGCCGAATATGCAAGTACCAA-AATAACATCACATAAGTACATACCTATAA
* * **
90963697 GGCCGAATATGCAAGTTCCAATATAACATCACATAAGTACATACCTATGT
1 GGCCGAATATGCAAGTACCAAAATAACATCACATAAGTACATACCTATAA
*
90963747 GGCCGAAGATGCAAG
1 GGCCGAATATGCAAG
90963762 GTCATTTAAC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 52 0.93
51 4 0.07
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (50 bp):
GGCCGAATATGCAAGTACCAAAATAACATCACATAAGTACATACCTATAA
Found at i:90970632 original size:50 final size:50
Alignment explanation
Indices: 90970523--90970634 Score: 127
Period size: 50 Copynumber: 2.2 Consensus size: 50
90970513 ACTACTTATT
* * * *
90970523 TGGCTGAATATGCAAGATCAAGAATAATATCATATATGTACATATCTATA
1 TGGCTGAATATGCAAGATCAAGAATAACATCACATAAGTACATACCTATA
* * * *
90970573 AGGCTGAATATGCAAGTTCCAA-TATAACATCACATAAGTACATACCTATG
1 TGGCTGAATATGCAAGAT-CAAGAATAACATCACATAAGTACATACCTATA
*
90970623 TGGCCGAATATG
1 TGGCTGAATATG
90970635 AAAGGTCATT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 48 0.94
51 3 0.06
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (50 bp):
TGGCTGAATATGCAAGATCAAGAATAACATCACATAAGTACATACCTATA
Found at i:90977616 original size:46 final size:45
Alignment explanation
Indices: 90977564--90977738 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
90977554 TGGTTGAGCA
90977564 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * * *
90977610 TTCGAACTCGTTGAGTTGATTCTGAGTTCA-TGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
* * **
90977655 CATCCGAAGTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* *
90977703 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
90977739 GGCGGGTTAC
Statistics
Matches: 103, Mismatches: 17, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.55
47 26 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:90977720 original size:93 final size:93
Alignment explanation
Indices: 90977561--90977732 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
90977551 GGATGGTTGA
* ****
90977561 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTACGGATGCGAACACCCGAACTCGTTGAGT
* *
90977626 TGATTCTGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* * *
90977654 GCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTACGGATGCGAACACCCGAACTCGTTGAGT
90977719 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
90977733 CTTAGGGGCG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTACGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:90985157 original size:46 final size:46
Alignment explanation
Indices: 90985107--90985279 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
90985097 GTTGAGCATC
90985107 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG-TT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGCTT
* * * *
90985153 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--GC-TT
90985200 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGCTT
* *
90985247 -GAGCTCGTTGAGTTGAGTCCAAGTTCACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
90985280 GGCGGGTTAC
Statistics
Matches: 108, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.52
47 29 0.27
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGCTT
Found at i:90985261 original size:93 final size:93
Alignment explanation
Indices: 90985102--90985272 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
90985092 GGATGGTTGA
90985102 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
*
90985167 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* *
90985195 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTT-GAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG-TTCGAACTCGTTGAG
90985259 TTGAGTCCAAGTTC
65 TTGAGTCCAAGTTC
90985273 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 72 0.97
94 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Done.