Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 269 of 362
Found at i:90991297 original size:100 final size:100
Alignment explanation
Indices: 90991124--90991307 Score: 341
Period size: 100 Copynumber: 1.8 Consensus size: 100
90991114 GTGAGGTCAC
* *
90991124 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGGGTAGTACTAAGT
90991189 GCAGGCTACTATGCGTAGCCGAAAACTGTGATCAA
66 GCAGGCTACTATGCGTAGCCGAAAACTGTGATCAA
*
90991224 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGGGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGGGTAGTACTAAGT
90991289 GCAGGCTACTATGCGTAGC
66 GCAGGCTACTATGCGTAGC
90991308 AGATAGCTTC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGGGTAGTACTAAGT
GCAGGCTACTATGCGTAGCCGAAAACTGTGATCAA
Found at i:90991311 original size:49 final size:49
Alignment explanation
Indices: 90991125--90991312 Score: 227
Period size: 49 Copynumber: 3.8 Consensus size: 49
90991115 TGAGGTCACG
* *
90991125 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * *
90991174 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAGCC-GAAAACTGTGATC-AA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGATAA-T-TGGTCGCA
* *
90991224 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 -TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * *
90991274 TGGGTAGTACTAAGTGCAGGCTACTATGCGTAGCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
90991313 GCTTCGGCTA
Statistics
Matches: 117, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
49 72 0.62
50 8 0.07
51 37 0.32
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:90997940 original size:16 final size:16
Alignment explanation
Indices: 90997921--90997951 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
90997911 CATGTAACGC
90997921 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
90997937 CCCAAAAATCCCGAA
1 CCCAAAAATCCCGAA
90997952 TTCTCAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.39, G:0.06, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:90999488 original size:28 final size:28
Alignment explanation
Indices: 90999431--90999516 Score: 86
Period size: 28 Copynumber: 3.1 Consensus size: 28
90999421 ATGTGATTTT
*
90999431 GGCCTAATGGGCCATATAAATGTAAATA
1 GGCCTAATGGGCTATATAAATGTAAATA
*
90999459 GGCCTAATGGGCTATATGAAA-G-AGATTA
1 GGCCTAATGGGCTATAT-AAATGTA-AATA
* * * *
90999487 GGCCTAGTGGGATATATAAATATATATA
1 GGCCTAATGGGCTATATAAATGTAAATA
90999515 GG
1 GG
90999517 TATGTGGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
27 4 0.09
28 39 0.83
29 4 0.09
ACGTcount: A:0.37, C:0.10, G:0.26, T:0.27
Consensus pattern (28 bp):
GGCCTAATGGGCTATATAAATGTAAATA
Found at i:91003923 original size:28 final size:29
Alignment explanation
Indices: 91003883--91003969 Score: 133
Period size: 28 Copynumber: 3.1 Consensus size: 29
91003873 CATGACTGTA
91003883 AATGTGATTTGGGCCTAAT-GGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* *
91003911 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGATTTGGGCCTAATGGGCCATATG
*
91003940 AATGTGA-ATGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
91003968 AA
1 AA
91003970 AGAGATTAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
28 39 0.74
29 14 0.26
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:91003981 original size:28 final size:28
Alignment explanation
Indices: 91003886--91003994 Score: 114
Period size: 28 Copynumber: 3.9 Consensus size: 28
91003876 GACTGTAAAT
*
91003886 GTGATTTGGGCCTAAT-GGCCATATGAAT
1 GTGA-TTGGGCCTAATGGGCCATATGAAA
*
91003914 GTGATTTGGGCCTAATGGGCCACAT-AAA
1 GTGA-TTGGGCCTAATGGGCCATATGAAA
*
91003942 TGTGAATGGGCCTAATGGGCCATATGAAA
1 -GTGATTGGGCCTAATGGGCCATATGAAA
* * * *
91003971 GAGATTAGGCCTAGTGGGCTATAT
1 GTGATTGGGCCTAATGGGCCATAT
91003995 ATATATAGGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 55 0.80
29 14 0.20
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAATGGGCCATATGAAA
Found at i:91003982 original size:56 final size:57
Alignment explanation
Indices: 91003881--91003989 Score: 150
Period size: 56 Copynumber: 1.9 Consensus size: 57
91003871 AGCATGACTG
* * * *
91003881 TAAATGTGATTTGGGCCTAATGGCCATATGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATATGGGCCTAATGGCCATATGAAAGAGATTTAGGCCTAATGGGCCACA
*
91003938 TAAATGTGA-ATGGGCCTAATGGGCCATATGAAAGAGA-TTAGGCCTAGTGGGC
1 TAAATGTGATATGGGCCTAAT-GGCCATATGAAAGAGATTTAGGCCTAATGGGC
91003990 TATATATATA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 23 0.50
57 23 0.50
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (57 bp):
TAAATGTGATATGGGCCTAATGGCCATATGAAAGAGATTTAGGCCTAATGGGCCACA
Found at i:91016285 original size:36 final size:37
Alignment explanation
Indices: 91016227--91016307 Score: 146
Period size: 36 Copynumber: 2.2 Consensus size: 37
91016217 GGTGCTCCCG
91016227 TATTATTCGTAAAAAAAGAATGATGGTTCCATGAGAT
1 TATTATTCGTAAAAAAAGAATGATGGTTCCATGAGAT
91016264 TATTATTCGT-AAAAAAGAATGATGGTTCCATGAGAT
1 TATTATTCGTAAAAAAAGAATGATGGTTCCATGAGAT
91016300 TATGTATT
1 TAT-TATT
91016308 GATTACCAGC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
36 29 0.67
37 14 0.33
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.36
Consensus pattern (37 bp):
TATTATTCGTAAAAAAAGAATGATGGTTCCATGAGAT
Found at i:91024699 original size:30 final size:30
Alignment explanation
Indices: 91024665--91024731 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 30
91024655 GATTTTATTT
*
91024665 TATTTATTAATTTTTTAAACAT-AAACA-ACA
1 TATTTATTAA-TATTTAAA-ATAAAACATACA
*
91024695 TATTTTTTAATATTTAAAATAAAACATTACA
1 TATTTATTAATATTTAAAATAAAACA-TACA
91024726 TATTTA
1 TATTTA
91024732 ATTTTAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 2 0.06
29 12 0.39
30 9 0.29
31 8 0.26
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (30 bp):
TATTTATTAATATTTAAAATAAAACATACA
Found at i:91024780 original size:16 final size:16
Alignment explanation
Indices: 91024761--91024800 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
91024751 TACATAATAT
91024761 ATAAAAATAAAATAAA
1 ATAAAAATAAAATAAA
* *
91024777 ATAAACATATAATAAA
1 ATAAAAATAAAATAAA
91024793 ATCAAAAA
1 AT-AAAAA
91024801 ACATGTCGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (16 bp):
ATAAAAATAAAATAAA
Found at i:91024792 original size:21 final size:20
Alignment explanation
Indices: 91024766--91024804 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
91024756 AATATATAAA
91024766 AATAAAATAAAATAAACATAT
1 AATAAAATAAAA-AAACATAT
*
91024787 AATAAAATCAAAAAACAT
1 AATAAAATAAAAAAACAT
91024805 GTCGAGTCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
AATAAAATAAAAAAACATAT
Found at i:91033469 original size:43 final size:42
Alignment explanation
Indices: 91033379--91033533 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
91033369 TTTTGATATG
* * *
91033379 TGATTT-CGTGTAAGACCA-GTCTGGGACATTGGCATCG-ATT
1 TGATTTACATGTAAGACCATATCTGGGACA-TGGTATCGTATT
*
91033419 TGAGATTTACAAGTAAGACCATATCTGGGACATCGGTATCGTATT
1 T--GATTTACATGTAAGACCATATCTGGGACAT-GGTATCGTATT
* * *
91033464 TGATTT-C-TGTAAGACCCTGTCTGGGACAGTGGTATTGATATT
1 TGATTTACATGTAAGACCATATCTGGGACA-TGGTATCG-TATT
* *
91033506 TGA-TTACATGTAAAACCACATCTGGGAC
1 TGATTTACATGTAAGACCATATCTGGGAC
91033534 GTTGGCATTG
Statistics
Matches: 93, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
40 1 0.01
41 26 0.28
42 15 0.16
43 32 0.34
44 15 0.16
45 4 0.04
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTTACATGTAAGACCATATCTGGGACATGGTATCGTATT
Found at i:91033487 original size:41 final size:41
Alignment explanation
Indices: 91033379--91033518 Score: 124
Period size: 41 Copynumber: 3.3 Consensus size: 41
91033369 TTTTGATATG
* * *
91033379 TGATTTCGTGTAAGA-CCAGTCTGGGACATTGGCATCG-ATT
1 TGATTTCATGTAAGACCCTGTCTGGGACA-TGGTATCGTATT
* * *
91033419 TGAGATTTACAAGTAAGACCATATCTGGGACATCGGTATCGTATT
1 T--GATTT-CATGTAAGACCCTGTCTGGGACAT-GGTATCGTATT
*
91033464 TGATTTC-TGTAAGACCCTGTCTGGGACAGTGGTATTGATATT
1 TGATTTCATGTAAGACCCTGTCTGGGACA-TGGTATCG-TATT
*
91033506 TGATTACATGTAA
1 TGATTTCATGTAA
91033519 AACCACATCT
Statistics
Matches: 80, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
40 1 0.01
41 24 0.30
42 17 0.21
43 18 0.22
44 16 0.20
45 4 0.05
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.34
Consensus pattern (41 bp):
TGATTTCATGTAAGACCCTGTCTGGGACATGGTATCGTATT
Found at i:91033529 original size:84 final size:85
Alignment explanation
Indices: 91033379--91033533 Score: 199
Period size: 84 Copynumber: 1.8 Consensus size: 85
91033369 TTTTGATATG
* * *
91033379 TGATTTCGTGTAAGACCAGTCTGGGACATTGGCATCGATTTGAGATTTACAAGTAAGACCATATC
1 TGATTTCGTGTAAGACCAGTCTGGGACAGTGGCATCGATTTGAGATTTACAAGTAAAACCACATC
91033444 TGGGACATCGGTATCGTATT
66 TGGGACATCGGTATCGTATT
* * * * *
91033464 TGATTTC-TGTAAGACCCTGTCTGGGACAGTGGTATTGATATT-TGA-TTACATGTAAAACCACA
1 TGATTTCGTGTAAGA-CCAGTCTGGGACAGTGGCATCGAT-TTGAGATTTACAAGTAAAACCACA
91033526 TCTGGGAC
64 TCTGGGAC
91033534 GTTGGCATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
84 29 0.48
85 29 0.48
86 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (85 bp):
TGATTTCGTGTAAGACCAGTCTGGGACAGTGGCATCGATTTGAGATTTACAAGTAAAACCACATC
TGGGACATCGGTATCGTATT
Found at i:91034256 original size:23 final size:22
Alignment explanation
Indices: 91034225--91034267 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
91034215 TTATGAAACA
*
91034225 TATGTTTTGGTATGACTTTGGCT
1 TATGATTTGGTATGA-TTTGGCT
91034248 TATGATTTGGTATGATTTGG
1 TATGATTTGGTATGATTTGG
91034268 TATGGACTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.16, C:0.05, G:0.28, T:0.51
Consensus pattern (22 bp):
TATGATTTGGTATGATTTGGCT
Found at i:91034263 original size:10 final size:10
Alignment explanation
Indices: 91034225--91034271 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
91034215 TTATGAAACA
*
91034225 TATGTTTTGG
1 TATGATTTGG
91034235 TATGACTTTGG
1 TATGA-TTTGG
91034246 CTTATGATTTGG
1 --TATGATTTGG
91034258 TATGATTTGG
1 TATGATTTGG
91034268 TATG
1 TATG
91034272 GACTATAAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 18 0.55
11 5 0.15
12 5 0.15
13 5 0.15
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.51
Consensus pattern (10 bp):
TATGATTTGG
Found at i:91043065 original size:43 final size:43
Alignment explanation
Indices: 91043016--91043100 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
91043006 TTATTTAAGC
*
91043016 TAAAGGAAAATTTAGCTAGGCATATGTGAAAGGAAATTTTGTT
1 TAAAGGAAAATTCAGCTAGGCATATGTGAAAGGAAATTTTGTT
*
91043059 TAAAGGAAAATTCAGCTAGGCATGTGTGAAAGGAAATTTTGT
1 TAAAGGAAAATTCAGCTAGGCATATGTGAAAGGAAATTTTGT
91043101 GTATTTTGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.31
Consensus pattern (43 bp):
TAAAGGAAAATTCAGCTAGGCATATGTGAAAGGAAATTTTGTT
Found at i:91043651 original size:43 final size:42
Alignment explanation
Indices: 91043517--91043686 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 42
91043507 AGGATTTTTG
* * *
91043517 ATATGTGATTTCATGTAAGACCACGTTTGGGACATTGGCATC
1 ATATTTGATTTCATGTAAGACCACGTCTGGGACAGTGGCATC
* * * * *
91043559 -TATTTGAGATTTACGTGTAAGACCATGTCTAGGACA-TCGTCACC
1 ATATTT--GATTT-CATGTAAGACCACGTCTGGGACAGT-GGCATC
*
91043603 ATATTTGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATC
1 ATATTTGATTTCATGTAAGACCAC-GTCTGGGACAGTGGCATC
*
91043645 AATATTTGATTACATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 -ATATTTGATTTCATGTAAGACCACGTCTGGGACAG-TGGCAT
91043687 TGTATGAGCT
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
41 4 0.04
42 25 0.24
43 47 0.45
44 24 0.23
45 5 0.05
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
ATATTTGATTTCATGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:91044402 original size:23 final size:22
Alignment explanation
Indices: 91044371--91044413 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
91044361 TTATGAAACA
*
91044371 TATGTTTTGGTATGACTTTGGCT
1 TATGATTTGGTATGA-TTTGGCT
91044394 TATGATTTGGTATGATTTGG
1 TATGATTTGGTATGATTTGG
91044414 TATGGACTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.16, C:0.05, G:0.28, T:0.51
Consensus pattern (22 bp):
TATGATTTGGTATGATTTGGCT
Found at i:91044409 original size:10 final size:10
Alignment explanation
Indices: 91044371--91044417 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
91044361 TTATGAAACA
*
91044371 TATGTTTTGG
1 TATGATTTGG
91044381 TATGACTTTGG
1 TATGA-TTTGG
91044392 CTTATGATTTGG
1 --TATGATTTGG
91044404 TATGATTTGG
1 TATGATTTGG
91044414 TATG
1 TATG
91044418 GACTATAAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 18 0.55
11 5 0.15
12 5 0.15
13 5 0.15
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.51
Consensus pattern (10 bp):
TATGATTTGG
Found at i:91051352 original size:20 final size:18
Alignment explanation
Indices: 91051305--91051342 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
91051295 GAAATATCTA
*
91051305 GTGAACGAAAGCATATGG
1 GTGAATGAAAGCATATGG
91051323 GTGAATGAAAGCATATGG
1 GTGAATGAAAGCATATGG
91051341 GT
1 GT
91051343 AAGCATGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.08, G:0.34, T:0.21
Consensus pattern (18 bp):
GTGAATGAAAGCATATGG
Found at i:91057800 original size:7 final size:7
Alignment explanation
Indices: 91057790--91057827 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
91057780 AAAAGTAAAA
91057790 AAAAATT
1 AAAAATT
*
91057797 AAAATTT
1 AAAAATT
91057804 AAAAA-T
1 AAAAATT
91057810 AAAAATAT
1 AAAAAT-T
91057818 AAAAATT
1 AAAAATT
91057825 AAA
1 AAA
91057828 TTTTAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 6 0.22
7 14 0.52
8 7 0.26
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAAAATT
Found at i:91057809 original size:14 final size:14
Alignment explanation
Indices: 91057790--91057834 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
91057780 AAAAGTAAAA
91057790 AAAAATTAAAATTT
1 AAAAATTAAAATTT
* *
91057804 AAAAATAAAAATAT
1 AAAAATTAAAATTT
*
91057818 AAAAATTAAATTTT
1 AAAAATTAAAATTT
91057832 AAA
1 AAA
91057835 TTTATAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAAATTAAAATTT
Found at i:91060856 original size:16 final size:16
Alignment explanation
Indices: 91060837--91060867 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
91060827 TATTTTTATT
91060837 TTTATTTGATTTTTAG
1 TTTATTTGATTTTTAG
91060853 TTTATTTGATTTTTA
1 TTTATTTGATTTTTA
91060868 CTTAATTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.10, T:0.71
Consensus pattern (16 bp):
TTTATTTGATTTTTAG
Found at i:91072742 original size:50 final size:51
Alignment explanation
Indices: 91072636--91072826 Score: 135
Period size: 50 Copynumber: 3.8 Consensus size: 51
91072626 TGACCTTGTA
* * * *
91072636 TATATTCGGCCA-CATAGGTATGTACATATGTGATGTTATATTGGATTTTG
1 TATATTCGGCCATCATAGGTATGCACAAATGTGATATTATATTGGAATTTG
* *
91072686 -AGTATTCGGCCATGA-AGGTATGCACAAATGTGATATTATATTTGAATTTG
1 TA-TATTCGGCCATCATAGGTATGCACAAATGTGATATTATATTGGAATTTG
* * * * * * * * *
91072736 TATATTCTGCCAT-ATAAGTAAGTATATATTTGATGTTA-ATTTG-ATCTTG
1 TATATTCGGCCATCATAGGTATGCACAAATGTGATATTATATTGGAAT-TTG
* * * * *
91072785 CATATTCAGCCAT-ATAGGCATGCATATATGTGATATTATATT
1 TATATTCGGCCATCATAGGTATGCACAAATGTGATATTATATT
91072827 TGATTTTCTA
Statistics
Matches: 113, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
48 2 0.02
49 40 0.35
50 69 0.61
51 2 0.02
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.41
Consensus pattern (51 bp):
TATATTCGGCCATCATAGGTATGCACAAATGTGATATTATATTGGAATTTG
Found at i:91072808 original size:99 final size:100
Alignment explanation
Indices: 91072636--91072838 Score: 241
Period size: 99 Copynumber: 2.0 Consensus size: 100
91072626 TGACCTTGTA
* * * *
91072636 TATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTGGATTTTGAGTATTCGGCCATGA
1 TATATTCGGCCACATAAGTAAGTACATATGTGATGTTATATTGGATCTTGAGTATTCAGCCATGA
* *
91072701 AGGTATGCACAAATGTGATATTATATTTGAATTTG
66 AGGCATGCACAAATGTGATATTATATTTGAATTTC
* * * * *
91072736 TATATTCTGCCATATAAGTAAGTATATATTTGATGTTA-ATTTGATCTTGCA-TATTCAGCCAT-
1 TATATTCGGCCACATAAGTAAGTACATATGTGATGTTATATTGGATCTTG-AGTATTCAGCCATG
* * *
91072798 ATAGGCATGCATATATGTGATATTATATTTGATTTTC
65 A-AGGCATGCACAAATGTGATATTATATTTGAATTTC
91072835 TATA
1 TATA
91072839 ATCGACCGAA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
98 1 0.01
99 53 0.61
100 33 0.38
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (100 bp):
TATATTCGGCCACATAAGTAAGTACATATGTGATGTTATATTGGATCTTGAGTATTCAGCCATGA
AGGCATGCACAAATGTGATATTATATTTGAATTTC
Found at i:91074179 original size:46 final size:46
Alignment explanation
Indices: 91074082--91074192 Score: 127
Period size: 46 Copynumber: 2.4 Consensus size: 46
91074072 TTTTTGGTTG
* * *
91074082 GCATGCTTTACATGCGAATCAGATCTCATTACAATTGAACACAGTT
1 GCATGCTTAACATGCGAATCAAATCTCATTACAATTGAACACAGGT
** *
91074128 GCATGCTTAACATGCGAATCAAATCTCATTATGGATT-AAGAC-GGT
1 GCATGCTTAACATGCGAATCAAATCTCATTA-CAATTGAACACAGGT
*
91074173 GACATGCTAAACATGCGAAT
1 G-CATGCTTAACATGCGAAT
91074193 TAGATTAATT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
45 3 0.05
46 50 0.89
47 3 0.05
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (46 bp):
GCATGCTTAACATGCGAATCAAATCTCATTACAATTGAACACAGGT
Found at i:91075112 original size:7 final size:7
Alignment explanation
Indices: 91075102--91075133 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
91075092 GAAAATGAAT
91075102 GATGGAG
1 GATGGAG
91075109 GATGGAG
1 GATGGAG
91075116 GATGGAG
1 GATGGAG
91075123 GATGGAG
1 GATGGAG
91075130 GATG
1 GATG
91075134 ACGACAACGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.56, T:0.16
Consensus pattern (7 bp):
GATGGAG
Found at i:91088454 original size:43 final size:42
Alignment explanation
Indices: 91088407--91088490 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
91088397 TCTTACATGT
* *
91088407 AATCAAACATCGATGCCACTATCCCAGACAGGGTCTAACACGA
1 AATCAAACAT-GATGCCAATATCCCAAACAGGGTCTAACACGA
* * * * *
91088450 AATCAGATATGATGCCAATGTCCCAAACATGGTCTTACACG
1 AATCAAACATGATGCCAATATCCCAAACAGGGTCTAACACG
91088491 TAAAACAGAA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 26 0.76
43 8 0.24
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (42 bp):
AATCAAACATGATGCCAATATCCCAAACAGGGTCTAACACGA
Found at i:91088474 original size:42 final size:43
Alignment explanation
Indices: 91088418--91088499 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 43
91088408 ATCAAACATC
* * *
91088418 GATGCCACTATCCCAGACAGGGTCTAACACG-AAATCAGATAT
1 GATGCCAATATCCCAAACAGGGTCTAACACGTAAAACAGATAT
* * *
91088460 GATGCCAATGTCCCAAACATGGTCTTACACGTAAAACAGA
1 GATGCCAATATCCCAAACAGGGTCTAACACGTAAAACAGA
91088500 ACACGAAATC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 26 0.79
43 7 0.21
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.20
Consensus pattern (43 bp):
GATGCCAATATCCCAAACAGGGTCTAACACGTAAAACAGATAT
Found at i:91100380 original size:142 final size:142
Alignment explanation
Indices: 91100165--91100450 Score: 563
Period size: 142 Copynumber: 2.0 Consensus size: 142
91100155 GGGAATCATG
*
91100165 AAAGAGTAAAATTAGCTTTAAAATAGTTTTGGACAGCAGTAGTAGTATAACTTTGAAAAATCACC
1 AAAGAGTAAAATTAGCTTTAAAATAGTTTTGGACAGCAGTAGTAGTATAACCTTGAAAAATCACC
91100230 AAAAATTGTGGAAATAAAATTGGAGATTGAATAAAATATAAAATTAAATCGCATTGAGTCTAGTT
66 AAAAATTGTGGAAATAAAATTGGAGATTGAATAAAATATAAAATTAAATCGCATTGAGTCTAGTT
91100295 TTACATAGAAGA
131 TTACATAGAAGA
91100307 AAAGAGTAAAATTAGCTTTAAAATAGTTTTGGACAGCAGTAGTAGTATAACCTTGAAAAATCACC
1 AAAGAGTAAAATTAGCTTTAAAATAGTTTTGGACAGCAGTAGTAGTATAACCTTGAAAAATCACC
91100372 AAAAATTGTGGAAATAAAATTGGAGATTGAATAAAATATAAAATTAAATCGCATTGAGTCTAGTT
66 AAAAATTGTGGAAATAAAATTGGAGATTGAATAAAATATAAAATTAAATCGCATTGAGTCTAGTT
91100437 TTACATAGAAGA
131 TTACATAGAAGA
91100449 AA
1 AA
91100451 CAATGTAAGC
Statistics
Matches: 143, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 143 1.00
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29
Consensus pattern (142 bp):
AAAGAGTAAAATTAGCTTTAAAATAGTTTTGGACAGCAGTAGTAGTATAACCTTGAAAAATCACC
AAAAATTGTGGAAATAAAATTGGAGATTGAATAAAATATAAAATTAAATCGCATTGAGTCTAGTT
TTACATAGAAGA
Found at i:91110136 original size:40 final size:40
Alignment explanation
Indices: 91110001--91110180 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
91109991 AAACCAAGTA
** * *
91110001 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
91110040 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA-AATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
91110079 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
91110119 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
91110159 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
91110181 CAATCCGAAT
Statistics
Matches: 128, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 63 0.49
40 65 0.51
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:91110151 original size:79 final size:79
Alignment explanation
Indices: 91110001--91110180 Score: 258
Period size: 79 Copynumber: 2.3 Consensus size: 79
91109991 AAACCAAGTA
* * * *
91110001 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTC-GGGCTTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
91110064 GTAACTCGCA-AATTG
64 GTAACTCGCACAAATG
*
91110079 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGG-CTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
91110144 TAACTCGCACAAATG
65 TAACTCGCACAAATG
91110159 CCTTCGGGCTTAGCCCGGTTAT
1 CCTTCGGGCTTAGCCCGGTTAT
91110181 CAATCCGAAT
Statistics
Matches: 91, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 9 0.10
79 67 0.74
80 12 0.13
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
CCTTCGGGCTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:91111934 original size:17 final size:16
Alignment explanation
Indices: 91111912--91111943 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
91111902 TTAGTCTACC
91111912 TGAATATGTATGTATAT
1 TGAATATGTAT-TATAT
91111929 TGAATATGTATTATA
1 TGAATATGTATTATA
91111944 ACATTGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.47
Consensus pattern (16 bp):
TGAATATGTATTATAT
Found at i:91115830 original size:31 final size:31
Alignment explanation
Indices: 91115792--91115919 Score: 140
Period size: 31 Copynumber: 4.3 Consensus size: 31
91115782 TAGAGTAATT
* *
91115792 GTGGTAGGTCATCTTTGTCGGGCAATTCGAG
1 GTGGTAGGTCATCATTGTCGGGCAATCCGAG
* * * *
91115823 GTAGTAGGTTATCATTGCCGGGCAATCCAAG
1 GTGGTAGGTCATCATTGTCGGGCAATCCGAG
* *
91115854 GTGGTAGGTCATCATTGTCTGGCAATCCGGG
1 GTGGTAGGTCATCATTGTCGGGCAATCCGAG
91115885 GTGGTAGG---TCATTG-CGGGGCAATCC-AG
1 GTGGTAGGTCATCATTGTC-GGGCAATCCGAG
91115912 GTGGTAGG
1 GTGGTAGG
91115920 CTTTCATCAC
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
27 10 0.12
28 14 0.17
31 58 0.71
ACGTcount: A:0.19, C:0.17, G:0.37, T:0.27
Consensus pattern (31 bp):
GTGGTAGGTCATCATTGTCGGGCAATCCGAG
Found at i:91115892 original size:62 final size:58
Alignment explanation
Indices: 91115792--91115919 Score: 166
Period size: 62 Copynumber: 2.1 Consensus size: 58
91115782 TAGAGTAATT
* *
91115792 GTGGTAGGTCATCTTTGTCGGGCAATTCGAGGTAGTAGGTTATCATTGCCGGGCAATCCAAG
1 GTGGTAGGTCATCATTGTCGGGCAATCCGAGGTAGTAGG---TCATTGCCGGGCAATCC-AG
* * * *
91115854 GTGGTAGGTCATCATTGTCTGGCAATCCGGGGTGGTAGGTCATTGCGGGGCAATCCAG
1 GTGGTAGGTCATCATTGTCGGGCAATCCGAGGTAGTAGGTCATTGCCGGGCAATCCAG
91115912 GTGGTAGG
1 GTGGTAGG
91115920 CTTTCATCAC
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
58 10 0.17
59 16 0.27
62 34 0.57
ACGTcount: A:0.19, C:0.17, G:0.37, T:0.27
Consensus pattern (58 bp):
GTGGTAGGTCATCATTGTCGGGCAATCCGAGGTAGTAGGTCATTGCCGGGCAATCCAG
Found at i:91117405 original size:13 final size:13
Alignment explanation
Indices: 91117387--91117423 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
91117377 ATCAACTAAT
91117387 TTTTTTATATATA
1 TTTTTTATATATA
*
91117400 TTTTTTATATATT
1 TTTTTTATATATA
91117413 TTTCTTTATAT
1 TTT-TTTATAT
91117424 GTCAAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTTTATATATA
Found at i:91120644 original size:30 final size:32
Alignment explanation
Indices: 91120595--91120653 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 32
91120585 TATTTTTTAA
*
91120595 TTTTAAAAATTCAGGAAAAATATAAAATTATT
1 TTTTAAAAATTCAGAAAAAATATAAAATTATT
*
91120627 TTTTAAAAATT-A-AAAAAATATTAAATT
1 TTTTAAAAATTCAGAAAAAATATAAAATT
91120654 TATTAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 13 0.52
31 1 0.04
32 11 0.44
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (32 bp):
TTTTAAAAATTCAGAAAAAATATAAAATTATT
Found at i:91120675 original size:19 final size:20
Alignment explanation
Indices: 91120635--91120680 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
91120625 TTTTTTAAAA
*
91120635 ATTAAAAAAATATTAAATTT
1 ATTAAAAAAATATTAAAATT
*
91120655 ATTAAAAAAGTA-TAAAATT
1 ATTAAAAAAATATTAAAATT
91120674 A-TAAAAA
1 ATTAAAAA
91120681 TATGTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.25
19 7 0.29
20 11 0.46
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
ATTAAAAAAATATTAAAATT
Found at i:91120687 original size:20 final size:19
Alignment explanation
Indices: 91120632--91120687 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
91120622 TTATTTTTTA
*
91120632 AAAATTA-AAAAAATAT-T
1 AAAATTATAAAAAATGTAT
*
91120649 AAATTTATTAAAAAA-GTAT
1 AAAATTA-TAAAAAATGTAT
91120668 AAAATTATAAAAATATGTAT
1 AAAATTATAAAAA-ATGTAT
91120688 TTTAATAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 6 0.19
18 7 0.23
19 14 0.45
20 4 0.13
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (19 bp):
AAAATTATAAAAAATGTAT
Found at i:91122247 original size:31 final size:31
Alignment explanation
Indices: 91122211--91122279 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
91122201 AAAAATCCAA
91122211 CAAATTTAACCCTTAATGTTTGCACATTTGT
1 CAAATTTAACCCTTAATGTTTGCACATTTGT
91122242 CAAATTTAACCCTTAATGTTTGCACATTTGT
1 CAAATTTAACCCTTAATGTTTGCACATTTGT
91122273 C-AATTTA
1 CAAATTTA
91122280 GTCCAAATTC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 6 0.16
31 32 0.84
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.42
Consensus pattern (31 bp):
CAAATTTAACCCTTAATGTTTGCACATTTGT
Found at i:91123531 original size:299 final size:298
Alignment explanation
Indices: 91122753--91124183 Score: 1978
Period size: 298 Copynumber: 4.8 Consensus size: 298
91122743 AAACTCAATT
* * *
91122753 TTGCGTTTTCTATTAACAAGAAAAAATCGACCATTAAAGCACTGCTTAGCCTTAAGCATTTGAGT
1 TTGCGTTTTCTATTAACGAGAAAAAATCGACCATTGAAGCACTGCTTAGCTTTAAGCATTTGAGT
* * * * * * * * *
91122818 CCTTCAAAGCCCTACACTTTGCTGCTAAAATGGAGTTAGAGAAGTTAGATTTGATATAGATGATT
66 CATTCAAAGTCCTACACTTTGCTACTGAAAGGGAGTCAGAGATGTTCGATTTGATATCGATGATT
* *
91122883 TGACAGCATTGATGACAGAAGGTTCAAATTTTGGTTTCTTACCTCTTCATGCTCATCGTATGAGG
131 TGACAACATTGATGACAGGAGGTTCAAATTTTGGTTTCTTACCTCTTCATGCTCATCGTATGAGG
* * * *
91122948 TAAGGGAAGAATCACCTAACTCCTAAAACTTTCACCGCGAGACATCGGTAAGCTACATGGATCGG
196 TAAGGGAAGAATGACCTAACTCCTAAAACTTCCATCGCGAGACATCGGTAAGCTACATGGACCGG
*
91123013 CTTTGATAACAACAATAAAGTAAGTATCAATGCCACTA
261 CTTTGATAACAACAATAAAGTAAGCATCAATGCCACTA
*
91123051 TTGCATTTTCTATTAACGAGAAAAAATCGACCATTGAAGCACTGCTTAGCTTTAAGCATTTGAGT
1 TTGCGTTTTCTATTAACGAGAAAAAATCGACCATTGAAGCACTGCTTAGCTTTAAGCATTTGAGT
* *
91123116 CATTCAACGTCCTACACTTTGCTACTGAAAGGGAATCAGAGATGTTCGATTTGATATCGATGATT
66 CATTCAAAGTCCTACACTTTGCTACTGAAAGGGAGTCAGAGATGTTCGATTTGATATCGATGATT
* * * *
91123181 TGACAGCACTGATGACAGAAGGTTCAAATTTTGGTTTTTTACCTCTTCATGCTCATCGTATGAGG
131 TGACAACATTGATGACAGGAGGTTCAAATTTTGGTTTCTTACCTCTTCATGCTCATCGTATGAGG
* *
91123246 TAAGGGAAGAATGACCTAACTCCTAAAACTTTCACCGCGAGACATCGGTAAGCTACATGGACCGG
196 TAAGGGAAGAATGACCTAACTCCTAAAACTTCCATCGCGAGACATCGGTAAGCTACATGGACCGG
* *
91123311 CTTTGATAACAACAATAGAGTAAGTATCAATGCCACTA
261 CTTTGATAACAACAATAAAGTAAGCATCAATGCCACTA
*
91123349 TTGCATTTTCTATTAACGAGAAAAAAATCGACCATTGAAGCACTGCTTAGCTTTAAGCATTTGAG
1 TTGCGTTTTCTATTAACGAG-AAAAAATCGACCATTGAAGCACTGCTTAGCTTTAAGCATTTGAG
* *
91123414 TCATTCAACGTCCTACACTTTGCTACTGAAAGGGAATCAGAGATGTTCGATTTGATATCGATGAT
65 TCATTCAAAGTCCTACACTTTGCTACTGAAAGGGAGTCAGAGATGTTCGATTTGATATCGATGAT
* * *
91123479 TTGACAACACTGATGACAGGAGGTTCAAATTTTGGTTTTTTACCTTTTCATGCTCATCGTATGAG
130 TTGACAACATTGATGACAGGAGGTTCAAATTTTGGTTTCTTACCTCTTCATGCTCATCGTATGAG
* * *** * * * *
91123544 GTAAGGAAAAAATGGGTTGACTCCTAAAACTTCCATTGCGAGACATCAGTAAGCTAAATGGACCG
195 GTAAGGGAAGAATGACCTAACTCCTAAAACTTCCATCGCGAGACATCGGTAAGCTACATGGACCG
* * *
91123609 GTTTTGATAACAACAATAAAGTAAGCATTAATACCACTA
260 GCTTTGATAACAACAATAAAGTAAGCATCAATGCCACTA
** * * * * * *
91123648 TTATGTTTTCCATTAACGAGAAAAAATCAATCTTTGAAGCACTGTTTAGCCTTAAGCATTTGAGT
1 TTGCGTTTTCTATTAACGAGAAAAAATCGACCATTGAAGCACTGCTTAGCTTTAAGCATTTGAGT
* * * * *
91123713 CCTTGAAAGT-CTAACACTTTGTTATTGAAAGGGAGCCAGAGATG-TCAGATTTGATATCGATGA
66 CATTCAAAGTCCT-ACACTTTGCTACTGAAAGGGAGTCAGAGATGTTC-GATTTGATATCGATGA
* * *
91123776 TTTGACAACATTGATGACAGGAGGTTCGAATTCTGGTTTCTTACGTCTTCATGCTCATCGTATGA
129 TTTGACAACATTGATGACAGGAGGTTCAAATTTTGGTTTCTTACCTCTTCATGCTCATCGTATGA
* *
91123841 GGTAAGGGAAGACTTGA-CT--C-CC-AAAACTTCCATCGCAAGACATCGGTAAGCTACATGGAC
194 GGTAAGGGAAGA-ATGACCTAACTCCTAAAACTTCCATCGCGAGACATCGGTAAGCTACATGGAC
* *
91123901 CGACTTTGATAACAACAATAGAGTAAGCATCAATGCCACTA
258 CGGCTTTGATAACAACAATAAAGTAAGCATCAATGCCACTA
* * * * *
91123942 TTGTGTTTTCTATTAACGAGAAAAAATCAACCATTAAAACACTACTTAGCTTTAAGCATTTGAGT
1 TTGCGTTTTCTATTAACGAGAAAAAATCGACCATTGAAGCACTGCTTAGCTTTAAGCATTTGAG-
* * ** * *
91124007 TC-TTTAAAGTCCTACACTTTGCTACTAAAATTGAGTCAGAGATGCTAGATTTGATATCGATGAT
65 TCATTCAAAGTCCTACACTTTGCTACTGAAAGGGAGTCAGAGATGTTCGATTTGATATCGATGAT
* * ** * *
91124071 TTGACAACATTAATGACAGGAGGTTCAAATTTCGAATTCTCACCTCTTCATGCTCATCGTATAAG
130 TTGACAACATTGATGACAGGAGGTTCAAATTTTGGTTTCTTACCTCTTCATGCTCATCGTATGAG
* *
91124136 GTAAGGGAAGAATGACCTGACTCCTAAAACTTCCATCGCAAGACATCG
195 GTAAGGGAAGAATGACCTAACTCCTAAAACTTCCATCGCGAGACATCG
91124184 TATAACACCT
Statistics
Matches: 1019, Mismatches: 102, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
293 3 0.00
294 243 0.24
295 7 0.01
296 2 0.00
297 6 0.01
298 481 0.47
299 277 0.27
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (298 bp):
TTGCGTTTTCTATTAACGAGAAAAAATCGACCATTGAAGCACTGCTTAGCTTTAAGCATTTGAGT
CATTCAAAGTCCTACACTTTGCTACTGAAAGGGAGTCAGAGATGTTCGATTTGATATCGATGATT
TGACAACATTGATGACAGGAGGTTCAAATTTTGGTTTCTTACCTCTTCATGCTCATCGTATGAGG
TAAGGGAAGAATGACCTAACTCCTAAAACTTCCATCGCGAGACATCGGTAAGCTACATGGACCGG
CTTTGATAACAACAATAAAGTAAGCATCAATGCCACTA
Found at i:91133631 original size:26 final size:26
Alignment explanation
Indices: 91133597--91133653 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
91133587 TTTTTATAAT
* *
91133597 AAATAATATATATTTTCAAGTTTTTA
1 AAATTATATATATTTTCAAATTTTTA
* *
91133623 AAATTATATTTATTTTTAAATTTTTA
1 AAATTATATATATTTTCAAATTTTTA
*
91133649 GAATT
1 AAATT
91133654 TGGACTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (26 bp):
AAATTATATATATTTTCAAATTTTTA
Found at i:91138152 original size:49 final size:48
Alignment explanation
Indices: 91138066--91138313 Score: 249
Period size: 49 Copynumber: 5.2 Consensus size: 48
91138056 AAATATGGTT
*
91138066 TTACACTGGCTCTCAC-ATCTAAGTCAATGCCATGTCCCAGACAGGTC
1 TTACACTGGCTCTCACTATCTGAGTCAATGCCATGTCCCAGACAGGTC
* *
91138113 TTACACTGGCTCTCACTTATCTGTGTCAATGCCATGTCCCAGACAAGTC
1 TTACACTGGCTCTCAC-TATCTGAGTCAATGCCATGTCCCAGACAGGTC
* * * * * *
91138162 TTATAC--ACT-TACAC-ACCTCAAGCCGATGCCATGTCCCAGACAGGTC
1 TTACACTGGCTCT-CACTATCT-GAGTCAATGCCATGTCCCAGACAGGTC
* * *
91138208 TTACACTAGCT-TGCA-TATCTTGAGGCCAATGCCATGTCCCAAACAGGTC
1 TTACACTGGCTCT-CACTATC-TGA-GTCAATGCCATGTCCCAGACAGGTC
* * *
91138257 TTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGATAGGTC
1 TTACACTGGCTCTCAC-TATCTGAGTCAATGCCATGTCCCAGACAGGTC
91138306 TTACACTG
1 TTACACTG
91138314 ACACACACAT
Statistics
Matches: 165, Mismatches: 24, Indels: 22
0.78 0.11 0.10
Matches are distributed among these distances:
45 3 0.02
46 28 0.17
47 21 0.13
48 8 0.05
49 98 0.59
50 3 0.02
51 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (48 bp):
TTACACTGGCTCTCACTATCTGAGTCAATGCCATGTCCCAGACAGGTC
Found at i:91151572 original size:11 final size:11
Alignment explanation
Indices: 91151556--91151580 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91151546 AAATGGACTA
91151556 TTCTTTTTTTT
1 TTCTTTTTTTT
91151567 TTCTTTTTTTT
1 TTCTTTTTTTT
91151578 TTC
1 TTC
91151581 ATGACAGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTCTTTTTTTT
Found at i:91154037 original size:29 final size:29
Alignment explanation
Indices: 91153998--91154076 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
91153988 CTTAATAATC
*
91153998 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
91154028 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
91154057 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
91154077 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:91162364 original size:29 final size:29
Alignment explanation
Indices: 91162325--91162403 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
91162315 CTTAATAATC
*
91162325 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
91162355 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
91162384 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
91162404 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:91172852 original size:47 final size:47
Alignment explanation
Indices: 91172792--91172919 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 47
91172782 GTGTGAATGA
* * *
91172792 TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTAATTTGGCTACAGGCCATGGTATAGGTACTCAGAGAGAAGT
* * * * * *
91172839 TACCTTAATTTGGCTACGGGTCATGGTATAAGTACTCCGGGATAAGT
1 TACCTTAATTTGGCTACAGGCCATGGTATAGGTACTCAGAGAGAAGT
*
91172886 TACCTTAATTTGGCTGA-TGGCCATGGTATAGGTA
1 TACCTTAATTTGGCT-ACAGGCCATGGTATAGGTA
91172920 ATTATCGATT
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 67 0.99
48 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (47 bp):
TACCTTAATTTGGCTACAGGCCATGGTATAGGTACTCAGAGAGAAGT
Found at i:91174866 original size:29 final size:29
Alignment explanation
Indices: 91174829--91174912 Score: 125
Period size: 29 Copynumber: 2.9 Consensus size: 29
91174819 CAATCATTTC
*
91174829 ATATGGCCCATTAGGCCCAAATCACCTGA
1 ATATGGCCCATTAGGCCCAAATCACATGA
* **
91174858 ATGTGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGA
91174887 ATATGGCCCATTAGGCCC-AATCACAT
1 ATATGGCCCATTAGGCCCAAATCACAT
91174913 TCATATTCAT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 8 0.16
29 42 0.84
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGA
Found at i:91175150 original size:16 final size:16
Alignment explanation
Indices: 91175131--91175175 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
91175121 AAACTTTTGG
91175131 CTTTTCGGCATTTTAA
1 CTTTTCGGCATTTTAA
* *
91175147 CTTTTTGGCATTTTGA
1 CTTTTCGGCATTTTAA
*
91175163 CATTTCGGC-TTTT
1 CTTTTCGGCATTTT
91175176 GCCGATCCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.13, C:0.18, G:0.16, T:0.53
Consensus pattern (16 bp):
CTTTTCGGCATTTTAA
Found at i:91178196 original size:21 final size:22
Alignment explanation
Indices: 91178141--91178199 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 22
91178131 AAATGACTAG
91178141 AAATTAAA-TAAATAAAATAGA
1 AAATTAAATTAAATAAAATAGA
91178162 AAATTTAAATATTAAAT-AAATCA-A
1 AAA-TT-AA-ATTAAATAAAAT-AGA
91178186 AAATTAAATTAAAT
1 AAATTAAATTAAAT
91178200 TGGGAAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
21 10 0.30
22 4 0.12
23 4 0.12
24 9 0.27
25 6 0.18
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (22 bp):
AAATTAAATTAAATAAAATAGA
Found at i:91178687 original size:88 final size:87
Alignment explanation
Indices: 91178538--91178736 Score: 245
Period size: 88 Copynumber: 2.3 Consensus size: 87
91178528 GCTTTCGAAG
* * **
91178538 CAAAGAATCAATTTAAAACAAAAATAAAAAATTGATTCAAAGAAGAAAAGGATCAATTTAAAACA
1 CAAAGAATCGATTTAAAACAACAATAAAAAATTGATTCAAAGAAGAAAACAATCAATTTAAAACA
*
91178603 ACAAAAAAATCGATTCAAAGAAC
66 AC-AAAAAATCGATTAAAAGAAC
* ** * ***
91178626 CAAAGAAACGATTTAAAACAACAATAATGAATTGATTCAAAGAAGCAAACAATTTGTTTAAAACA
1 CAAAGAATCGATTTAAAACAACAATAAAAAATTGATTCAAAGAAGAAAACAATCAATTTAAAACA
* *
91178691 ACAAACAATCGATTAAAAGAAG
66 ACAAAAAATCGATTAAAAGAAC
* *
91178713 AAAAGAATCGATTTAAAATAACAA
1 CAAAGAATCGATTTAAAACAACAA
91178737 ACAATCCATT
Statistics
Matches: 94, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
87 38 0.40
88 56 0.60
ACGTcount: A:0.59, C:0.12, G:0.10, T:0.20
Consensus pattern (87 bp):
CAAAGAATCGATTTAAAACAACAATAAAAAATTGATTCAAAGAAGAAAACAATCAATTTAAAACA
ACAAAAAATCGATTAAAAGAAC
Found at i:91178736 original size:45 final size:44
Alignment explanation
Indices: 91178534--91178736 Score: 207
Period size: 45 Copynumber: 4.6 Consensus size: 44
91178524 ACGGGCTTTC
* * *
91178534 GAAGCAAAGAATCAATTTAAAACAAAAATAAAAAATTGATTCAAA
1 GAAGCAAAGAATCGATTTAAAACAACAAT-AAAAATCGATTCAAA
* * *
91178579 GAAGAAAAGGATCAATTTAAAACAACAA-AAAAATCGATTCAAA
1 GAAGCAAAGAATCGATTTAAAACAACAATAAAAATCGATTCAAA
* * * *
91178622 GAACCAAAGAAACGATTTAAAACAACAATAATGAATTGATTCAAA
1 GAAGCAAAGAATCGATTTAAAACAACAATAA-AAATCGATTCAAA
* * * *
91178667 GAAGCAAACAATTTG-TTTAAAACAAC-A-AACAATCGATTAAAA
1 GAAGCAAAGAA-TCGATTTAAAACAACAATAAAAATCGATTCAAA
* *
91178709 GAAGAAAAGAATCGATTTAAAATAACAA
1 GAAGCAAAGAATCGATTTAAAACAACAA
91178737 ACAATCCATT
Statistics
Matches: 131, Mismatches: 22, Indels: 12
0.79 0.13 0.07
Matches are distributed among these distances:
41 2 0.02
42 29 0.22
43 40 0.31
44 3 0.02
45 56 0.43
46 1 0.01
ACGTcount: A:0.59, C:0.11, G:0.11, T:0.19
Consensus pattern (44 bp):
GAAGCAAAGAATCGATTTAAAACAACAATAAAAATCGATTCAAA
Found at i:91178742 original size:21 final size:21
Alignment explanation
Indices: 91178593--91178748 Score: 77
Period size: 21 Copynumber: 7.2 Consensus size: 21
91178583 AAAAGGATCA
*
91178593 ATTTAAAACAACAAAAAAATCG
1 ATTTAAAACAAC-AAACAATCG
* * * *
91178615 ATTCAAAGA-ACCAAAGAAACG
1 ATTTAAA-ACAACAAACAATCG
* *
91178636 ATTTAAAACAACAATAATGAATTG
1 ATTTAAAACAAC-A-AA-CAATCG
* * *
91178660 ATTCAAAGA-AGCAAACAATTTG
1 ATTTAAA-ACAACAAACAA-TCG
91178682 -TTTAAAACAACAAACAATCG
1 ATTTAAAACAACAAACAATCG
* * *
91178702 A-TTAAAAGAAGAAAAGAATCG
1 ATTTAAAACAA-CAAACAATCG
* *
91178723 ATTTAAAATAACAAACAATCC
1 ATTTAAAACAACAAACAATCG
91178744 ATTTA
1 ATTTA
91178749 GCAAAAAAAT
Statistics
Matches: 102, Mismatches: 21, Indels: 23
0.70 0.14 0.16
Matches are distributed among these distances:
20 12 0.12
21 51 0.50
22 22 0.22
23 4 0.04
24 12 0.12
25 1 0.01
ACGTcount: A:0.56, C:0.13, G:0.09, T:0.21
Consensus pattern (21 bp):
ATTTAAAACAACAAACAATCG
Found at i:91179514 original size:45 final size:45
Alignment explanation
Indices: 91179430--91179694 Score: 257
Period size: 45 Copynumber: 6.1 Consensus size: 45
91179420 CTACATTTCA
** * * **
91179430 AACAATAATGAATCAATT-AAATAAGCAAATAATAGATTTAAAAC
1 AACAATAATGAATTGATTCAAAGAAGCAAAGAATCTATTTAAAAC
*
91179474 AACATTAATGAATTGATTCAAAGAAGCAAAGAATCTATTTAAAAC
1 AACAATAATGAATTGATTCAAAGAAGCAAAGAATCTATTTAAAAC
* * * *
91179519 AACAATAATGAATTGGTTTAAAGAAGCCAAGAATCTATTTAAAGC
1 AACAATAATGAATTGATTCAAAGAAGCAAAGAATCTATTTAAAAC
* * *
91179564 AAC-A-AA-CAATTGATTCAAAGAAGAAAAGAATCAATTTAAAAC
1 AACAATAATGAATTGATTCAAAGAAGCAAAGAATCTATTTAAAAC
*
91179606 AAC---AA-GCAATTGATTCAAAGAAGCAAA-AATCGATTTAAAAC
1 AACAATAATG-AATTGATTCAAAGAAGCAAAGAATCTATTTAAAAC
* ** *
91179647 AA-AAAAAAAAATTGA-TCAAAGAAGAAAAGAA-CTGATTTAAAAC
1 AACAATAATGAATTGATTCAAAGAAGCAAAGAATCT-ATTTAAAAC
91179690 AACAA
1 AACAA
91179695 ACAATCGATT
Statistics
Matches: 187, Mismatches: 25, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
41 17 0.09
42 64 0.34
43 23 0.12
44 18 0.10
45 65 0.35
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22
Consensus pattern (45 bp):
AACAATAATGAATTGATTCAAAGAAGCAAAGAATCTATTTAAAAC
Found at i:91179593 original size:42 final size:42
Alignment explanation
Indices: 91179465--91179706 Score: 256
Period size: 42 Copynumber: 5.6 Consensus size: 42
91179455 CAAATAATAG
*
91179465 ATTTAAAACAACATTAATGAATTGATTCAAAGAAGCAAAGAATCT
1 ATTTAAAACAACA--AA-CAATTGATTCAAAGAAGCAAAGAATCT
* * * *
91179510 ATTTAAAACAACAATAATGAATTGGTTTAAAGAAGCCAAGAATCT
1 ATTTAAAACAAC-A-AA-CAATTGATTCAAAGAAGCAAAGAATCT
* * *
91179555 ATTTAAAGCAACAAACAATTGATTCAAAGAAGAAAAGAATCA
1 ATTTAAAACAACAAACAATTGATTCAAAGAAGCAAAGAATCT
* *
91179597 ATTTAAAACAACAAGCAATTGATTCAAAGAAGCAAA-AATCG
1 ATTTAAAACAACAAACAATTGATTCAAAGAAGCAAAGAATCT
* * *
91179638 ATTTAAAACAAAAAAAAAAATTGA-TCAAAGAAGAAAAGAA-CT
1 ATTTAAAAC--AACAAACAATTGATTCAAAGAAGCAAAGAATCT
*
91179680 GATTTAAAACAACAAACAATCGATTCA
1 -ATTTAAAACAACAAACAATTGATTCA
91179707 GGAAAAAAAT
Statistics
Matches: 169, Mismatches: 22, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
41 23 0.14
42 70 0.41
43 23 0.14
44 1 0.01
45 51 0.30
46 1 0.01
ACGTcount: A:0.55, C:0.12, G:0.11, T:0.22
Consensus pattern (42 bp):
ATTTAAAACAACAAACAATTGATTCAAAGAAGCAAAGAATCT
Found at i:91179861 original size:90 final size:90
Alignment explanation
Indices: 91179748--91179928 Score: 299
Period size: 90 Copynumber: 2.0 Consensus size: 90
91179738 TAACTCATGA
* *
91179748 TATTTGCTTTCATCAATTGAAAAGCAAGACAATGAAGGAAGAAGTAGTTGTACAATCCCTAAAAC
1 TATTTGCTTTCATCAATTAAAAAGCAAGACAATGAAGGAAGAAGCAGTTGTACAATCCCTAAAAC
* *
91179813 CTTTATCAATTATTAGGGATGTGGT
66 CTTCATCAATAATTAGGGATGTGGT
* * *
91179838 TATTTGCTTTCATCAATTAAAAAGCAAGACGATGAAGGAAGGAGCGGTTGTACAATCCCTAAAAC
1 TATTTGCTTTCATCAATTAAAAAGCAAGACAATGAAGGAAGAAGCAGTTGTACAATCCCTAAAAC
91179903 CTTCATCAATAATTAGGGATGTGGT
66 CTTCATCAATAATTAGGGATGTGGT
91179928 T
1 T
91179929 GGGTCGGGTT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (90 bp):
TATTTGCTTTCATCAATTAAAAAGCAAGACAATGAAGGAAGAAGCAGTTGTACAATCCCTAAAAC
CTTCATCAATAATTAGGGATGTGGT
Found at i:91184256 original size:28 final size:28
Alignment explanation
Indices: 91184216--91184306 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 28
91184206 TGGGAAGTAG
* *
91184216 TTGGGGCTGATGGGCTATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
91184244 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * * *
91184272 TTGGGCCTGATAGGACATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
91184300 TTGGGCC
1 TTGGGCC
91184307 GAAAGGGGCC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.22, C:0.13, G:0.37, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:91184709 original size:26 final size:27
Alignment explanation
Indices: 91184624--91185023 Score: 383
Period size: 27 Copynumber: 14.7 Consensus size: 27
91184614 TAATAAAAAG
* *
91184624 AAATTACTGAAATACGCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*** *
91184651 AAATTTTTGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
91184678 AAATTACCAAAATGCCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
**
91184704 AAATTATTGAAATACCCTCGATTTGTAA
1 AAATTACCGAAATACCCTCGATTTGT-A
* * *
91184732 AATACTGAAATATCGAAATAACCTCGATTTATA
1 AA-A-T----TACCGAAATACCCTCGATTTGTA
*
91184765 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
91184791 AAATTACTGAAATACCCTCGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
91184818 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
** * **
91184844 AAATTACTAAAATACCTTTAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
91184871 AAATTATCGAAATACCCCCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
91184898 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
91184925 AAATTATCGAAATACCATCGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
*
91184952 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
91184979 AAATTACCAAAACACCCTCGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
91185006 AAGTTATCGAAATACCCT
1 AAATTACCGAAATACCCT
91185024 TGTAGTTAAA
Statistics
Matches: 304, Mismatches: 59, Indels: 20
0.79 0.15 0.05
Matches are distributed among these distances:
26 63 0.21
27 213 0.70
28 2 0.01
29 1 0.00
30 1 0.00
31 1 0.00
32 1 0.00
33 3 0.01
34 19 0.06
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:91184751 original size:34 final size:35
Alignment explanation
Indices: 91184702--91184778 Score: 102
Period size: 34 Copynumber: 2.2 Consensus size: 35
91184692 CCCTCGATTG
* * *
91184702 TGAAATTATTGAAATACCCTCGATTTGTAAAA-TAC
1 TGAAA-TATCGAAATAACCTCGATTTATAAAATTAC
91184737 TGAAATATCGAAATAACCTCGATTTATAAAATTAC
1 TGAAATATCGAAATAACCTCGATTTATAAAATTAC
*
91184772 CGAAATA
1 TGAAATA
91184779 CCCTCGATTG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 23 0.62
35 14 0.38
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.31
Consensus pattern (35 bp):
TGAAATATCGAAATAACCTCGATTTATAAAATTAC
Found at i:91184816 original size:87 final size:88
Alignment explanation
Indices: 91184666--91184831 Score: 271
Period size: 87 Copynumber: 1.9 Consensus size: 88
91184656 TTTGAAACAC
* * *
91184666 CCTCGATTTGTAAAATTACCAAAATGCCCTCGATTGTGAAATTATTGAAATACCCTCGATTTGTA
1 CCTCGATTTATAAAATTACCAAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTA
*
91184731 AAA-TACTGAAATATCGAAATAA
66 AAATTACCGAAATATCGAAATAA
* *
91184753 CCTCGATTTATAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGGTTTGTA
1 CCTCGATTTATAAAATTACCAAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTA
91184818 AAATTACCGAAATA
66 AAATTACCGAAATA
91184832 CCCTCGATTG
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
87 63 0.88
88 9 0.12
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.31
Consensus pattern (88 bp):
CCTCGATTTATAAAATTACCAAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTA
AAATTACCGAAATATCGAAATAA
Found at i:91192330 original size:27 final size:27
Alignment explanation
Indices: 91192279--91192331 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
91192269 TAAAAGAATA
91192279 AAAAGAGAAAATCAAAGCAAAAATGTG
1 AAAAGAGAAAATCAAAGCAAAAATGTG
91192306 AAAAGAGAAAATCAAAGCAAAAATGT
1 AAAAGAGAAAATCAAAGCAAAAATGT
91192332 ATCCATCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.64, C:0.08, G:0.17, T:0.11
Consensus pattern (27 bp):
AAAAGAGAAAATCAAAGCAAAAATGTG
Found at i:91207687 original size:9 final size:9
Alignment explanation
Indices: 91207665--91207698 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
91207655 CCAAAATATT
91207665 AATTAATT-
1 AATTAATTA
91207673 AATTAATTA
1 AATTAATTA
*
91207682 AATTAACTA
1 AATTAATTA
91207691 AATTAATT
1 AATTAATT
91207699 TCTGAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (9 bp):
AATTAATTA
Found at i:91207904 original size:20 final size:21
Alignment explanation
Indices: 91207866--91207904 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
91207856 TATTTAGTTC
*
91207866 ATTAAATAATAATTCTAAGAA
1 ATTAAATAATAATTATAAGAA
*
91207887 ATTAAATTA-AATTATAAG
1 ATTAAATAATAATTATAAG
91207905 TCATCTTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (21 bp):
ATTAAATAATAATTATAAGAA
Found at i:91209708 original size:19 final size:20
Alignment explanation
Indices: 91209680--91209719 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
91209670 ATAAGCTGTA
*
91209680 AAATATATGATAAATGTGGG
1 AAATATATGAGAAATGTGGG
*
91209700 AAATA-ATGAGAATTGTGGG
1 AAATATATGAGAAATGTGGG
91209719 A
1 A
91209720 TGCTTCTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (20 bp):
AAATATATGAGAAATGTGGG
Found at i:91210205 original size:47 final size:46
Alignment explanation
Indices: 91210139--91210266 Score: 127
Period size: 47 Copynumber: 2.7 Consensus size: 46
91210129 TGTGTGCTAG
*
91210139 TGTAAGACATGTCTAGGACATGCATCGGCCACATT-ACGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGG-CACATTGACGAGAGCCAA
* * * *
91210185 TGTAAGACCATGTCTGGGACATGGCATTGG--CATTGAGATGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCACATT--GACGAGAGCCAA
*
91210233 TGTAAGACATGTCCGGGACATGCATCGGCTACAT
1 TGTAAGACATGTCTGGGACATGCATCGGC-ACAT
91210267 GATGTATTAG
Statistics
Matches: 67, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
45 4 0.06
46 13 0.19
47 26 0.39
48 21 0.31
49 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCACATTGACGAGAGCCAA
Found at i:91213348 original size:47 final size:46
Alignment explanation
Indices: 91213246--91213367 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 46
91213236 TAAGGTGCCA
* *
91213246 ATGCCATGTCCTAGACATGGTCTTATACTTGCTCATATATCAAGCTG
1 ATGCCATGTCCTAGACATGGTCTTACAC-TGCTCATATATCAAGCCG
* *
91213293 ATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCATCTCGTAGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTG-CTCAT-ATATC-AAGCCG
*
91213341 ATG-CATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCTAGACATGGTCTTACACT
91213368 CGCTTACGCC
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
46 14 0.21
47 46 0.69
48 7 0.10
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (46 bp):
ATGCCATGTCCTAGACATGGTCTTACACTGCTCATATATCAAGCCG
Found at i:91213434 original size:46 final size:46
Alignment explanation
Indices: 91213338--91213451 Score: 122
Period size: 46 Copynumber: 2.5 Consensus size: 46
91213328 CATCTCGTAG
* * * * *
91213338 CCGATGCATGTCCCAGACATGTCTTACACTCGCTTACGCCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTCACACTAGCCTACGCCTCAAGA
* * *
91213384 CCGATGCTTGTCCCAGACATGTCTCACACTAGCCCT-CGTCTCAATA
1 CCGATGCATGTCCCAGACATGTCTCACACTAG-CCTACGCCTCAAGA
*
91213430 CCGATGCCATGTCTCAGACATG
1 CCGATG-CATGTCCCAGACATG
91213452 GTCTTATACT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
46 41 0.73
47 15 0.27
ACGTcount: A:0.21, C:0.35, G:0.19, T:0.25
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTCACACTAGCCTACGCCTCAAGA
Found at i:91226579 original size:47 final size:44
Alignment explanation
Indices: 91226521--91226634 Score: 122
Period size: 47 Copynumber: 2.5 Consensus size: 44
91226511 CTAGTGTAAC
* *
91226521 ACATGTCTGGGACATGTATCGGTCACATT-ACGAGAGCCAGTCTAAG
1 ACATGTTTGGGACATGCATC-G--ACATTGACGAGAGCCAGTCTAAG
* *
91226567 ACCATGTTTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAG
1 A-CATGTTTGGGACAT-GCATCGACATT--GACGAGAGCCAGTCTAAG
91226615 ACATGTTTGGGACATGCATC
1 ACATGTTTGGGACATGCATC
91226635 ATCTACATGA
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
45 5 0.08
46 6 0.10
47 28 0.47
48 20 0.34
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (44 bp):
ACATGTTTGGGACATGCATCGACATTGACGAGAGCCAGTCTAAG
Found at i:91226759 original size:47 final size:50
Alignment explanation
Indices: 91226648--91226777 Score: 169
Period size: 47 Copynumber: 2.7 Consensus size: 50
91226638 TACATGATGT
*
91226648 GTCAGTATAAGACCATGTCTGGGACATGGCATCTGCACGAATACGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCTGCACGAATACGTGAGA
* * **
91226698 GTCAGTGTAAGACCATATCTGGGACATGGCGT-TG-ACTTA-ACGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCTGCACGAATACGTGAGA
*
91226745 G-CTAGTGTAAGACCATGTCTTGGACATGGCATC
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATC
91226778 GACATTATAC
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 1 0.01
47 35 0.50
48 3 0.04
49 2 0.03
50 29 0.41
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCTGCACGAATACGTGAGA
Found at i:91231282 original size:3 final size:3
Alignment explanation
Indices: 91231274--91231304 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
91231264 CTTGCTTTTG
91231274 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
91231305 AAACTATATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:91234657 original size:49 final size:49
Alignment explanation
Indices: 91234594--91234768 Score: 219
Period size: 49 Copynumber: 3.5 Consensus size: 49
91234584 CTGGTACGCA
* *
91234594 TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACATG
* * * * *
91234643 TAGTAGCTTGCACTTAGTACTACACACGTGATCACAATTTTCGGGT--ATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCTGGTACATG
* *
91234692 CATAGTGGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 --TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACATG
91234743 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
91234769 CGTGACCTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
49 65 0.62
50 2 0.02
51 38 0.36
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACATG
Found at i:91234764 original size:100 final size:101
Alignment explanation
Indices: 91234586--91234782 Score: 324
Period size: 100 Copynumber: 2.0 Consensus size: 101
91234576 GAAGCTATCT
* *
91234586 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACATGTAGTAGCT
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
91234651 TGCACTTAGTACTACACACGTGA-TCACAATTTTCG
66 TGCACTTAGTACTACACACGTGACTCACAATTTTCG
* * * *
91234686 GGTATGCATAGTGGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
91234751 TGCACTTAGTACTACACACGTGACCTCACAAT
66 TGCACTTAGTACTACACACGTGA-CTCACAAT
91234783 AGTTCATTTG
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 82 0.92
102 7 0.08
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACTCACAATTTTCG
Found at i:91236316 original size:27 final size:28
Alignment explanation
Indices: 91236286--91236409 Score: 123
Period size: 27 Copynumber: 4.6 Consensus size: 28
91236276 AATTCGGGAT
* *
91236286 ATTATAAAAAGACCCCT-AATTTGTAAA
1 ATTATAAAAATACCCCTCAGTTTGTAAA
*
91236313 ATTACT-AAAATA-CCCTCAGTTTGCAAA
1 ATTA-TAAAAATACCCCTCAGTTTGTAAA
** *
91236340 ATTATTGAAATAGCCC-CAGTTTGTAAA
1 ATTATAAAAATACCCCTCAGTTTGTAAA
**
91236367 ATTATCGAAATA-CCCTCAGTTTGTAAA
1 ATTATAAAAATACCCCTCAGTTTGTAAA
*
91236394 ATTATCAAAATACCCC
1 ATTATAAAAATACCCC
91236410 GGTAGGGCAA
Statistics
Matches: 84, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
26 8 0.10
27 69 0.82
28 7 0.08
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (28 bp):
ATTATAAAAATACCCCTCAGTTTGTAAA
Found at i:91236405 original size:54 final size:53
Alignment explanation
Indices: 91236286--91236409 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 53
91236276 AATTCGGGAT
* * *
91236286 ATTATAAAAAGACCCCTAATTTGTAAAATTACTAAAATACCCTCAGTTTGCAAA
1 ATTATCAAAATACCCC-AGTTTGTAAAATTACTAAAATACCCTCAGTTTGCAAA
** * *
91236340 ATTATTGAAATAGCCCCAGTTTGTAAAATTA-TCGAAATACCCTCAGTTTGTAAA
1 ATTATCAAAATA-CCCCAGTTTGTAAAATTACT-AAAATACCCTCAGTTTGCAAA
91236394 ATTATCAAAATACCCC
1 ATTATCAAAATACCCC
91236410 GGTAGGGCAA
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
53 5 0.08
54 51 0.85
55 4 0.07
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (53 bp):
ATTATCAAAATACCCCAGTTTGTAAAATTACTAAAATACCCTCAGTTTGCAAA
Found at i:91236422 original size:54 final size:54
Alignment explanation
Indices: 91236320--91236422 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
91236310 AAAATTACTA
** ** *
91236320 AAATACCCTCAGTTTGCAAAATTATTGAAATAGCCCCAGTTTGTAAAATTATCG
1 AAATACCCTCAGTTTGCAAAATTATCAAAATAGCCCCAGTGGGCAAAATTATCG
* *
91236374 AAATACCCTCAGTTTGTAAAATTATCAAAATA-CCCCGGTAGGGCAAAAT
1 AAATACCCTCAGTTTGCAAAATTATCAAAATAGCCCCAGT-GGGCAAAAT
91236423 GACTGTTTTG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 6 0.15
54 35 0.85
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (54 bp):
AAATACCCTCAGTTTGCAAAATTATCAAAATAGCCCCAGTGGGCAAAATTATCG
Found at i:91238710 original size:68 final size:68
Alignment explanation
Indices: 91238664--91238821 Score: 266
Period size: 68 Copynumber: 2.3 Consensus size: 68
91238654 ATACTATATA
91238664 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAG-AGAGCTACGTGAGAGAT
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAAGAGCTACG-GAGAGAT
91238728 AAAT
65 AAAT
91238732 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAG-AGAGCTACGTGAGAGAT
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAAGAGCTACG-GAGAGAT
91238796 AAAT
65 AAAT
* *
91238800 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
91238822 TCCAAGTGAA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (68 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAAGAGCTACGGAGAGATA
AAT
Found at i:91243962 original size:40 final size:40
Alignment explanation
Indices: 91243925--91244109 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
91243915 GCTACTCGTT
*
91243925 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
91243965 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
91244005 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
91244044 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
91244085 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
91244110 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 74 0.60
41 15 0.12
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:91244027 original size:79 final size:80
Alignment explanation
Indices: 91243925--91244107 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
91243915 GCTACTCGTT
* * *
91243925 CAAATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
91243989 GATTTAGTAACTT-GCA
64 GATATAGTAACTTAGCA
* **
91244005 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
91244069 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
91244085 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
91244108 GACATCATTC
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 55 0.61
80 32 0.36
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:91246047 original size:27 final size:27
Alignment explanation
Indices: 91245945--91246047 Score: 136
Period size: 27 Copynumber: 3.8 Consensus size: 27
91245935 ACCTCGGATC
* *
91245945 GTAAAATTACCAAAATACCCCCAATTT
1 GTAAAATTACCAAAATACCCCTAGTTT
91245972 GTAAAATTACCAAAATACCCTCT-GTTT
1 GTAAAATTACCAAAATACCC-CTAGTTT
* * *
91245999 GTAAAATTATCGAAATAACCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTTT
*
91246026 GTAAAATTACCGAAATACCCCT
1 GTAAAATTACCAAAATACCCCT
91246048 GTAGGGCAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 2 0.03
27 64 0.96
28 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTTT
Found at i:91248369 original size:30 final size:31
Alignment explanation
Indices: 91248333--91248391 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
91248323 AGACTCTGAG
91248333 GTTGAATTGGTT-ATGAGTG-TTTCAGGGAAA
1 GTTGAATTGGTTGATGAGTGATTT-AGGGAAA
*
91248363 GTTGAATTGGTTGTTGAGTGATTTAGGGA
1 GTTGAATTGGTTGATGAGTGATTTAGGGA
91248392 GAAAATCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 12 0.46
31 11 0.42
32 3 0.12
ACGTcount: A:0.24, C:0.02, G:0.36, T:0.39
Consensus pattern (31 bp):
GTTGAATTGGTTGATGAGTGATTTAGGGAAA
Found at i:91249808 original size:26 final size:27
Alignment explanation
Indices: 91249779--91249905 Score: 168
Period size: 27 Copynumber: 4.8 Consensus size: 27
91249769 AGACCTCGGA
* * *
91249779 TTGTAAAATTACCAAAATACCTAC-GT
1 TTGTAAAATTATCGAAATACCTCCAGT
*
91249805 TTGTAAAATTATCGAAATACCCCCAGT
1 TTGTAAAATTATCGAAATACCTCCAGT
*
91249832 TTGTAAAATTAACGAAATACCTCCAGT
1 TTGTAAAATTATCGAAATACCTCCAGT
*
91249859 TTGTAAAATTATCGAAATACC-CCAAT
1 TTGTAAAATTATCGAAATACCTCCAGT
* *
91249885 TTGTGAAATTATTGAAATACC
1 TTGTAAAATTATCGAAATACC
91249906 CCTGTAGGGC
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 43 0.48
27 47 0.52
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCTCCAGT
Found at i:91249882 original size:53 final size:53
Alignment explanation
Indices: 91249779--91249905 Score: 175
Period size: 53 Copynumber: 2.4 Consensus size: 53
91249769 AGACCTCGGA
* * *
91249779 TTGTAAAATTACCAAAATACCTACGTTTGTAAAATTATCGAAATACCCCCAGT
1 TTGTAAAATTAACGAAATACCTACGTTTGTAAAATTATCGAAATACCCCCAAT
*
91249832 TTGTAAAATTAACGAAATACCTCCAGTTTGTAAAATTATCGAAATA-CCCCAAT
1 TTGTAAAATTAACGAAATACCTAC-GTTTGTAAAATTATCGAAATACCCCCAAT
* **
91249885 TTGTGAAATTATTGAAATACC
1 TTGTAAAATTAACGAAATACC
91249906 CCTGTAGGGC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 45 0.68
54 21 0.32
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.31
Consensus pattern (53 bp):
TTGTAAAATTAACGAAATACCTACGTTTGTAAAATTATCGAAATACCCCCAAT
Found at i:91249920 original size:53 final size:54
Alignment explanation
Indices: 91249809--91249920 Score: 129
Period size: 53 Copynumber: 2.1 Consensus size: 54
91249799 CTACGTTTGT
* ** *
91249809 AAAATTATCGAAATACCCCCAGTTTGTAAAATTAACGAAATACCTCCAGTTTGT
1 AAAATTATCGAAATACCCCCAATTTGTAAAATTAACGAAATACCTCCAGTGGGC
* ** *
91249863 AAAATTATCGAAATA-CCCCAATTTGTGAAATTATTGAAATACC-CCTGTAGGGC
1 AAAATTATCGAAATACCCCCAATTTGTAAAATTAACGAAATACCTCCAGT-GGGC
91249916 AAAAT
1 AAAAT
91249921 GACTATTTTG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.08
53 30 0.61
54 15 0.31
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (54 bp):
AAAATTATCGAAATACCCCCAATTTGTAAAATTAACGAAATACCTCCAGTGGGC
Found at i:91250695 original size:27 final size:27
Alignment explanation
Indices: 91250659--91250716 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
91250649 ATGGGTTAGG
* * *
91250659 CCCAATTGATTTTGTTATGGG-TTGTGA
1 CCCAAATGATATTGTAATGGGCTT-TGA
91250686 CCCAAATGATATTGTAATGGGCTTTGA
1 CCCAAATGATATTGTAATGGGCTTTGA
91250713 CCCA
1 CCCA
91250717 CGTATGCTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.36
Consensus pattern (27 bp):
CCCAAATGATATTGTAATGGGCTTTGA
Found at i:91253622 original size:31 final size:31
Alignment explanation
Indices: 91253584--91253645 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
91253574 ACCTAATAAG
91253584 AATAAATCTTGAATTCGTTTATAGATTTATT
1 AATAAATCTTGAATTCGTTTATAGATTTATT
*
91253615 AATAAATCTTGAATTTGTTTATAGATTTATT
1 AATAAATCTTGAATTCGTTTATAGATTTATT
91253646 CGCTTGTGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.50
Consensus pattern (31 bp):
AATAAATCTTGAATTCGTTTATAGATTTATT
Found at i:91254000 original size:73 final size:73
Alignment explanation
Indices: 91253923--91254121 Score: 285
Period size: 73 Copynumber: 2.7 Consensus size: 73
91253913 GGGAAACCTT
* * *
91253923 AAAAAGGTTGGGATAGACCCGTCTAAGGAAATCTT-AAAAGAGTTAGG-ATAGACCTTGTCTAAG
1 AAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAAAAG-GTT-GGTATAGACCTTGTCTAAG
*
91253986 GCAACCTTTA
64 GCAAACTTTA
*
91253996 AAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGGT
1 AAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGGC
*
91254061 AAACTTTT
66 AAACTTTA
* * *
91254069 AAAAAGGTTGGGATAGACTTGTCTAAGGCAACCTTAAAAAGGTCGGGATAGAC
1 AAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGTATAGAC
91254122 ACATCTAAGG
Statistics
Matches: 115, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
72 2 0.02
73 108 0.94
74 5 0.04
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (73 bp):
AAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGGC
AAACTTTA
Found at i:91254108 original size:108 final size:108
Alignment explanation
Indices: 91253877--91254131 Score: 322
Period size: 108 Copynumber: 2.4 Consensus size: 108
91253867 CCTAGTCAAT
* * * * *
91253877 GGCAACATTTATAAAATGTTGGGACAGACCAGTCTAGGGAAACCTTAAAAAGGTTGGGATAGACC
1 GGCAACCTTTAAAAAAGGTTGGGATAGACCAGTCTAAGGAAACCTTAAAAAGGTTGGGATAGACC
91253942 CGTCTAAGGAAATCTTAAAAGAGTTAGGATAGACCTTGTCTAA
66 CGTCTAAGGAAATCTTAAAAGAGTTAGGATAGACCTTGTCTAA
* * *
91253985 GGCAACCTTTAAAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGTATAGACC
1 GGCAACCTTTAAAAAAGGTTGGGATAGACCAGTCTAAGGAAACCTTAAAAAGGTTGGGATAGACC
* * *
91254050 TTGTCTAAGGTAAACTTTTAAAA-AGGTTGGGATAGA-CTTGTCTAA
66 -CGTCTAAGG-AAA-TCTTAAAAGA-GTTAGGATAGACCTTGTCTAA
*
91254095 GGCAACC-TT-AAAAAGGTCGGGATAGACACA-TCTAAGG
1 GGCAACCTTTAAAAAAGGTTGGGATAGAC-CAGTCTAAGG
91254132 TGATTTTTTT
Statistics
Matches: 129, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
108 81 0.63
109 11 0.09
110 20 0.16
111 17 0.13
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (108 bp):
GGCAACCTTTAAAAAAGGTTGGGATAGACCAGTCTAAGGAAACCTTAAAAAGGTTGGGATAGACC
CGTCTAAGGAAATCTTAAAAGAGTTAGGATAGACCTTGTCTAA
Found at i:91254131 original size:35 final size:35
Alignment explanation
Indices: 91253889--91254121 Score: 270
Period size: 35 Copynumber: 6.5 Consensus size: 35
91253879 CAACATTTAT
* * * * *
91253889 AAAATGTTGGGACAGACCAGTCTAGGGAAACCTTA
1 AAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTA
* * *
91253924 AAAAGGTTGGGATAGACCCGTCTAAGGAAATCTT-
1 AAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTA
*
91253958 AAAAGAGTTAGGATAGACCTTGTCTAAGGCAACCTTTAA
1 AAAAG-GTTGGGATAGACC-TGTCTAAGGCAACC-TT-A
91253997 AAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTA
1 AAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTA
* * *
91254032 AAAAGGTTGGTATAGACCTTGTCTAAGGTAAACTTTTA
1 AAAAGGTTGGGATAGACC-TGTCTAAGG-CAAC-CTTA
*
91254070 AAAAGGTTGGGATAGACTTGTCTAAGGCAACCTTA
1 AAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTA
*
91254105 AAAAGGTCGGGATAGAC
1 AAAAGGTTGGGATAGAC
91254122 ACATCTAAGG
Statistics
Matches: 172, Mismatches: 18, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
34 5 0.03
35 78 0.45
36 25 0.15
37 28 0.16
38 31 0.18
39 5 0.03
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (35 bp):
AAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTA
Found at i:91256914 original size:139 final size:139
Alignment explanation
Indices: 91256503--91256920 Score: 428
Period size: 140 Copynumber: 3.0 Consensus size: 139
91256493 CAAAAGTCAG
* * * * ** * * *
91256503 CATAGTGTTGGACAAAATCGACTCTTATTTAATTGTTGCCTTAGTCATGCATATCCCAACCCTTA
1 CATAGTGTTAGACAAAGTCAACACTTATTTAAGCGTTGCTTTAGGCATGCATAT-CCAAACCTTA
* * * * *
91256568 TACAAAGATTTGGCCAAAGCGTATGTCAGCAAGTCTATCCCAACATTTAGGAAAGTGTCGACCCA
65 TACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTTTATCCCAACAATTAGGAAAGTGTCGGCCCA
* * *
91256633 AATGTGTAGG
130 AAAGTGTCGC
* * * * *
91256643 CATAGTGTTGGACAAAGTCAACCCTTTTTTAAGCATT-ATCTTAGGCATGCATATTCCAAACCTT
1 CATAGTGTTAGACAAAGTCAACACTTATTTAAGCGTTGCT-TTAGGCATGCATA-TCCAAACCTT
* * * * *
91256707 ATACAAAGAGTTGGCCAAAGCGTATGCCGGTAAGTTTATCCCAACACTGAGGAAAGTATCGGCCC
64 ATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTTTATCCCAACAATTAGGAAAGTGTCGGCCC
91256772 AAAAGTGTCGC
129 AAAAGTGTCGC
* * * **
91256783 CATAGTGTTAGTCAAAG-CTGACACTTATTTAAGGGTTGCTTTAGGCATGCATATCCTGACTCTT
1 CATAGTGTTAGACAAAGTC-AACACTTATTTAAGCGTTGCTTTAGGCATGCATATCCAAAC-CTT
* * * * * *
91256847 AT-CAGAGAGCTGGCCAAAGCGTATGTTGGCAAGTTTATCCCGACAATTAGGAAAATGTTGGCCC
64 ATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTTTATCCCAACAATTAGGAAAGTGTCGGCCC
91256911 AAAAGTGTCG
129 AAAAGTGTCG
91256921 TCTTAAGCCT
Statistics
Matches: 229, Mismatches: 44, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
139 67 0.29
140 160 0.70
141 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (139 bp):
CATAGTGTTAGACAAAGTCAACACTTATTTAAGCGTTGCTTTAGGCATGCATATCCAAACCTTAT
ACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTTTATCCCAACAATTAGGAAAGTGTCGGCCCAA
AAGTGTCGC
Found at i:91257659 original size:57 final size:57
Alignment explanation
Indices: 91257598--91257727 Score: 158
Period size: 57 Copynumber: 2.3 Consensus size: 57
91257588 ATAGAAATGG
*
91257598 TGAAAATGGAGAAATGAGAAAGATTTGAAAAT-ATTATGGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGAAAATAATT-TGGTTTTCTCCAAAATGAAAA
* * * *
91257655 TGAAAATGGAGAAAT-AGAACCATTTGGAAATGAATTTGGTTTTGTCTAAAATGAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGAAAAT-AATTTGGTTTTCTCCAAAATGAAAA
* *
91257712 TAAAAAT-GAAAAATGA
1 TGAAAATGGAGAAATGA
91257728 CCTGGAAATG
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
56 19 0.30
57 41 0.65
58 3 0.05
ACGTcount: A:0.48, C:0.05, G:0.19, T:0.28
Consensus pattern (57 bp):
TGAAAATGGAGAAATGAGAAACATTTGAAAATAATTTGGTTTTCTCCAAAATGAAAA
Found at i:91257734 original size:51 final size:55
Alignment explanation
Indices: 91257634--91257738 Score: 128
Period size: 57 Copynumber: 1.9 Consensus size: 55
91257624 GAAAATATTA
* *
91257634 TGGTTTTCTCCAAAATGAAAATGAAAATGGAGAAATAGAACCATTTGGAAATGAATT
1 TGGTTTTCTCCAAAATGAAAATAAAAATGGAAAAATAGAACC--TTGGAAATGAATT
* *
91257691 TGGTTTTGTCTAAAATGAAAATAAAAAT-GAAAAAT-G-ACC-TGGAAATGA
1 TGGTTTTCTCCAAAATGAAAATAAAAATGGAAAAATAGAACCTTGGAAATGA
91257739 TTTTATGTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
51 9 0.20
54 3 0.07
55 1 0.02
56 6 0.14
57 25 0.57
ACGTcount: A:0.46, C:0.08, G:0.19, T:0.28
Consensus pattern (55 bp):
TGGTTTTCTCCAAAATGAAAATAAAAATGGAAAAATAGAACCTTGGAAATGAATT
Found at i:91257917 original size:28 final size:26
Alignment explanation
Indices: 91257886--91257939 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 26
91257876 TAAAATTGGG
*
91257886 TTGAGATGATTATTTAATTGGAAATAAA
1 TTGAAATGATTATTT--TTGGAAATAAA
*
91257914 TTGAAATGTTTATTTTTGGAAATAAA
1 TTGAAATGATTATTTTTGGAAATAAA
91257940 AAAACAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 11 0.46
28 13 0.54
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.43
Consensus pattern (26 bp):
TTGAAATGATTATTTTTGGAAATAAA
Found at i:91259938 original size:38 final size:38
Alignment explanation
Indices: 91259875--91259970 Score: 129
Period size: 38 Copynumber: 2.5 Consensus size: 38
91259865 GGAGGATTGG
** * *
91259875 ATGAAAATATTTATCTACTGGCTCTTTGGAGCAACACC
1 ATGAAAATGGTTATCTACTGACTCTTTGAAGCAACACC
* **
91259913 ATGGAAATGGTTATCTACTGACTCTTTGAAGTGACACC
1 ATGAAAATGGTTATCTACTGACTCTTTGAAGCAACACC
91259951 ATGAAAATGGTTATCTACTG
1 ATGAAAATGGTTATCTACTG
91259971 GCTGTACGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (38 bp):
ATGAAAATGGTTATCTACTGACTCTTTGAAGCAACACC
Found at i:91259997 original size:38 final size:38
Alignment explanation
Indices: 91259908--91260002 Score: 118
Period size: 38 Copynumber: 2.5 Consensus size: 38
91259898 CTTTGGAGCA
** *
91259908 ACACCATGGAAATGGTTATCTACTGACTCTTTGAAGTG
1 ACACCATGGAAATGGTTATCTACTGACTCTACGAAATG
* * *
91259946 ACACCATGAAAATGGTTATCTACTGGCTGTACGAAATG
1 ACACCATGGAAATGGTTATCTACTGACTCTACGAAATG
* *
91259984 GCAGCATGGAAATGGTTAT
1 ACACCATGGAAATGGTTAT
91260003 TGACTCATTG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (38 bp):
ACACCATGGAAATGGTTATCTACTGACTCTACGAAATG
Found at i:91262328 original size:81 final size:84
Alignment explanation
Indices: 91262164--91262331 Score: 288
Period size: 86 Copynumber: 2.0 Consensus size: 84
91262154 TTGATATATA
91262164 TGAGTTAAATATAATATAATAGTGAATAATGAATTAATAGATTCTATTAATTGGTCAATTAGTTT
1 TGAGTTAAATATAATATAATAGTGAATAATGAATTAATAGATTCTATTAATTGGTCAA-TAG-TT
91262229 AGTTAAGGTACAAGTGGTGCG
64 AGTTAAGGTACAAGTGGTGCG
*
91262250 TGAGTTAGATATAATATAATAGTGAATAATGAATTAATAGATTCTATTAATTGGTC-A-A-TTAG
1 TGAGTTAAATATAATATAATAGTGAATAATGAATTAATAGATTCTATTAATTGGTCAATAGTTAG
91262312 TTAAGGTACAAGTGGTGCG
66 TTAAGGTACAAGTGGTGCG
91262331 T
1 T
91262332 ACTGAAAGTC
Statistics
Matches: 81, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
81 24 0.30
83 1 0.01
85 1 0.01
86 55 0.68
ACGTcount: A:0.38, C:0.05, G:0.20, T:0.37
Consensus pattern (84 bp):
TGAGTTAAATATAATATAATAGTGAATAATGAATTAATAGATTCTATTAATTGGTCAATAGTTAG
TTAAGGTACAAGTGGTGCG
Found at i:91266089 original size:25 final size:23
Alignment explanation
Indices: 91266037--91266091 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
91266027 TATAAATAGT
91266037 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
91266060 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
91266085 AATAGTG
1 AATAGTG
91266092 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:91266173 original size:22 final size:22
Alignment explanation
Indices: 91266147--91266221 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
91266137 TATAAAATAG
*
91266147 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
91266169 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
91266194 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
91266216 AGATAA
1 ATATAA
91266222 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:91266191 original size:25 final size:24
Alignment explanation
Indices: 91266153--91266215 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
91266143 ATAGATATAA
** *
91266153 AAAAAATATGTACATAATATAGTGT
1 AAAAAATACATACATAATATAAT-T
91266178 AAAAAATACATACATAATATAATT
1 AAAAAATACATACATAATATAATT
91266202 AAAATATATACATA
1 AAAA-A-ATACATA
91266216 AGATAACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (24 bp):
AAAAAATACATACATAATATAATT
Found at i:91266266 original size:25 final size:24
Alignment explanation
Indices: 91266238--91266367 Score: 90
Period size: 23 Copynumber: 5.6 Consensus size: 24
91266228 GAAAAAATAT
91266238 ATATATAAATAATATAGTATTAAAG
1 ATATATAAATAATATAGTATT-AAG
* * *
91266263 ATATATACATAAAATAGTA-TAAT
1 ATATATAAATAATATAGTATTAAG
** * *
91266286 ATATATATGTAATATAGAATTTAG
1 ATATATAAATAATATAGTATTAAG
** * *
91266310 A-ATATACCTAATATATTA-AAAG
1 ATATATAAATAATATAGTATTAAG
* *
91266332 A-ATATATATAATATAATATTAAG
1 ATATATAAATAATATAGTATTAAG
*
91266355 AAATAT-AATAATA
1 ATATATAAATAATA
91266368 ACAAAAAAAA
Statistics
Matches: 82, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
22 17 0.21
23 40 0.49
24 8 0.10
25 17 0.21
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.36
Consensus pattern (24 bp):
ATATATAAATAATATAGTATTAAG
Found at i:91266266 original size:29 final size:28
Alignment explanation
Indices: 91266166--91266275 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 28
91266156 AAATATGTAC
* *
91266166 ATAATATAGT-GTAAAA-A-ATACATAC
1 ATAATATAGTATTAAAATATATACATAA
91266191 ATAATATA--ATTAAAATATATACATAA
1 ATAATATAGTATTAAAATATATACATAA
* ** *
91266217 GATAACAT-GTAGAAAAAATATATATATAA
1 -ATAATATAGTA-TTAAAATATATACATAA
91266246 ATAATATAGTATTAAAGATATATACATAA
1 ATAATATAGTATTAAA-ATATATACATAA
91266275 A
1 A
91266276 ATAGTATAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
24 5 0.08
25 9 0.14
26 7 0.11
27 6 0.09
28 10 0.15
29 29 0.44
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (28 bp):
ATAATATAGTATTAAAATATATACATAA
Found at i:91266293 original size:27 final size:25
Alignment explanation
Indices: 91266234--91266293 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
91266224 TGTAGAAAAA
*
91266234 ATATATATATAAATAATATAGTATT
1 ATATATATATAAATAAAATAGTATT
* * * *
91266259 AAAGATATATACATAAAATAGTATA
1 ATATATATATAAATAAAATAGTATT
91266284 ATATATATAT
1 ATATATATAT
91266294 GTAATATAGA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (25 bp):
ATATATATATAAATAAAATAGTATT
Found at i:91266687 original size:16 final size:16
Alignment explanation
Indices: 91266649--91266687 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
91266639 TCTCCAAAAA
*
91266649 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
91266665 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
91266681 AATAACT
1 AAAAACT
91266688 CTTCTCATTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:91266873 original size:30 final size:30
Alignment explanation
Indices: 91266834--91266931 Score: 169
Period size: 30 Copynumber: 3.3 Consensus size: 30
91266824 AGGTAAAAGT
*
91266834 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
91266864 GGTGATGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
91266894 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
91266924 GGTGGTGG
1 GGTGGTGG
91266932 CAAAGGCTAG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.19, C:0.06, G:0.50, T:0.24
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:91269872 original size:32 final size:32
Alignment explanation
Indices: 91269836--91269901 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
91269826 AAAAGTATAT
*
91269836 TTTATTAATCGATATAAATAAAATTTTAATAA
1 TTTATTAATCAATATAAATAAAATTTTAATAA
** * *
91269868 TTTATTTTTTAATATAAATATAATTTTAATAA
1 TTTATTAATCAATATAAATAAAATTTTAATAA
91269900 TT
1 TT
91269902 CATAATTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (32 bp):
TTTATTAATCAATATAAATAAAATTTTAATAA
Found at i:91270475 original size:16 final size:17
Alignment explanation
Indices: 91270456--91270544 Score: 53
Period size: 16 Copynumber: 5.4 Consensus size: 17
91270446 GATTAACGAT
91270456 TTAAATATTAAA-ATAA
1 TTAAATATTAAATATAA
* *
91270472 TTAAA-ACTAAATATAT
1 TTAAATATTAAATATAA
*
91270488 TTAAATTATTATATATTAA
1 TTAAA-TATTAAATA-TAA
* **
91270507 -AAATATATTTTA-ATAA
1 TTAA-ATATTAAATATAA
*
91270523 TTATATATTAAATA-AA
1 TTAAATATTAAATATAA
91270539 TTAAAT
1 TTAAAT
91270545 CAATCAATTT
Statistics
Matches: 54, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
15 5 0.09
16 29 0.54
17 3 0.06
18 14 0.26
19 3 0.06
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAATATTAAATATAA
Found at i:91270500 original size:14 final size:14
Alignment explanation
Indices: 91270482--91270536 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 14
91270472 TTAAAACTAA
91270482 ATATATTTAAATTATT
1 ATATA-TTAAA-TATT
*
91270498 ATATATTAAA-AAT
1 ATATATTAAATATT
*
91270511 ATAT-TTTAATAATT
1 ATATATTAAAT-ATT
91270525 ATATATTAAATA
1 ATATATTAAATA
91270537 AATTAAATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 4 0.12
13 6 0.19
14 7 0.22
15 10 0.31
16 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
ATATATTAAATATT
Found at i:91270507 original size:25 final size:25
Alignment explanation
Indices: 91270460--91270544 Score: 84
Period size: 27 Copynumber: 3.4 Consensus size: 25
91270450 AACGATTTAA
* * *
91270460 ATATTAAAATAATTA-AAACTAAAT
1 ATATTTAAATAATTATATATTAAAT
*
91270484 ATATTTAAATTATTATATATTAAAAAT
1 ATATTTAAATAATTATATATT--AAAT
*
91270511 ATATTTTAATAATTATATATTAAAT
1 ATATTTAAATAATTATATATTAAAT
*
91270536 A-AATTAAAT
1 ATATTTAAAT
91270545 CAATCAATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
24 19 0.38
25 8 0.16
27 23 0.46
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (25 bp):
ATATTTAAATAATTATATATTAAAT
Found at i:91270525 original size:27 final size:27
Alignment explanation
Indices: 91270480--91270534 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
91270470 AATTAAAACT
*
91270480 AAATATATTTAAATTATTATATATTAA
1 AAATATATTTAAATAATTATATATTAA
*
91270507 AAATATATTTTAATAATTATATATTAA
1 AAATATATTTAAATAATTATATATTAA
91270534 A
1 A
91270535 TAAATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (27 bp):
AAATATATTTAAATAATTATATATTAA
Found at i:91272035 original size:23 final size:24
Alignment explanation
Indices: 91272009--91272057 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
91271999 CTTTTAGTTA
**
91272009 TTAATTTTTTT-GTCACTTTAACT
1 TTAATTTTTTTAAACACTTTAACT
91272032 TTAATTTTTTTAAACACTTTAACT
1 TTAATTTTTTTAAACACTTTAACT
91272056 TT
1 TT
91272058 CAATCGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.27, C:0.12, G:0.02, T:0.59
Consensus pattern (24 bp):
TTAATTTTTTTAAACACTTTAACT
Found at i:91277028 original size:48 final size:47
Alignment explanation
Indices: 91276964--91277075 Score: 147
Period size: 48 Copynumber: 2.3 Consensus size: 47
91276954 AGTGATAATT
91276964 TTAAATTTTCAATACTATTCGATATTATT-TTAATTTATGCAAATT-TAA
1 TTAAA-TTTCAATACTATTCGATATT-TTATTAATTTATGC-AATTATAA
* *
91277012 TTAAATTTGCAATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAATTT-CAATACTATTCGATATTTTATTAATTTATGCAATTATAA
91277060 TTACAATTTCAATACT
1 TTA-AATTTCAATACT
91277076 GCTTATTTTT
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
47 9 0.16
48 44 0.76
49 5 0.09
ACGTcount: A:0.37, C:0.10, G:0.04, T:0.49
Consensus pattern (47 bp):
TTAAATTTCAATACTATTCGATATTTTATTAATTTATGCAATTATAA
Found at i:91278109 original size:7 final size:7
Alignment explanation
Indices: 91278099--91278123 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
91278089 TTAGGATTTA
91278099 GTATTAT
1 GTATTAT
91278106 GTATTAT
1 GTATTAT
91278113 GTATTAT
1 GTATTAT
91278120 GTAT
1 GTAT
91278124 ATAAGTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
GTATTAT
Found at i:91282452 original size:126 final size:126
Alignment explanation
Indices: 91282227--91282595 Score: 544
Period size: 126 Copynumber: 2.9 Consensus size: 126
91282217 TTATAGCCTC
* * *
91282227 ATTTTTCTATGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTACTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTTTTCCAGAAATTTTGCTG
* * * *
91282292 ATAGTGTATCCTACTTGAAGCATTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
*
91282353 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACATGAGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTTTTCCAGAAATTTTGCTG
* * *
91282418 ACAGTGCATCCTGCTTGAAGTGTTTTTGGCACTATTTGTTCAGAAACGTCTACTTAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
91282479 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGT-AGGAGCTTTTTTCAGAAATTTTGCT
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGA-GAGCTTTTTCCAGAAATTTTGCT
* * * *
91282543 GACAGTACATCCTGTTTGAAGCGTTTTCCGACACTACTTT-TCCAGAAACGTCT
65 GACAGTGCATCCTGCTTGAAGCGTTTT-CGGCACTA-TTTGTTCAGAAACGTCT
91282596 GCTTAATATT
Statistics
Matches: 220, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
125 1 0.00
126 198 0.90
127 18 0.08
128 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTTTTCCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:91290732 original size:29 final size:29
Alignment explanation
Indices: 91290693--91290764 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
91290683 ACACAACCTA
* *
91290693 CACATGCTCGTGTGG-CTCACATGGTTTGG
1 CACATGATCGTGTGGCCT-ACATGGTTTGC
*
91290722 CATATGATCGTGTGGCCTACATGGTTTGC
1 CACATGATCGTGTGGCCTACATGGTTTGC
*
91290751 CACATGATCATGTG
1 CACATGATCGTGTG
91290765 ACCCACATAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.32
Consensus pattern (29 bp):
CACATGATCGTGTGGCCTACATGGTTTGC
Found at i:91290772 original size:29 final size:29
Alignment explanation
Indices: 91290710--91290772 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
91290700 TCGTGTGGCT
* * * *
91290710 CACATGGTTTGGCATATGATCGTGTGGCC
1 CACATGGTTTGCCACATGATCATGTGACC
*
91290739 TACATGGTTTGCCACATGATCATGTGACC
1 CACATGGTTTGCCACATGATCATGTGACC
91290768 CACAT
1 CACAT
91290773 AGCCTATCAG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (29 bp):
CACATGGTTTGCCACATGATCATGTGACC
Found at i:91291356 original size:17 final size:16
Alignment explanation
Indices: 91291333--91291404 Score: 50
Period size: 17 Copynumber: 4.8 Consensus size: 16
91291323 GGAAAAAGAA
91291333 AAGAAAGAAGAAATTG
1 AAGAAAGAAGAAATTG
*
91291349 ATAGAAAG-A-AAATAG
1 A-AGAAAGAAGAAATTG
*
91291364 AGGAAA-AAG-AA---
1 AAGAAAGAAGAAATTG
*
91291375 AAGAAGGAAGAAATTG
1 AAGAAAGAAGAAATTG
91291391 ATAGAAAGAAGAAA
1 A-AGAAAGAAGAAA
91291405 AGTGAAATGT
Statistics
Matches: 42, Mismatches: 5, Indels: 17
0.66 0.08 0.27
Matches are distributed among these distances:
11 4 0.10
12 3 0.07
13 2 0.05
14 7 0.17
15 6 0.14
16 3 0.07
17 17 0.40
ACGTcount: A:0.65, C:0.00, G:0.25, T:0.10
Consensus pattern (16 bp):
AAGAAAGAAGAAATTG
Found at i:91291356 original size:21 final size:21
Alignment explanation
Indices: 91291332--91291400 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
91291322 GGGAAAAAGA
91291332 AAAGAAAGAAGAAATTGATAG
1 AAAGAAAGAAGAAATTGATAG
*
91291353 AAAGAAA-ATAGAGGAA---AAAG
1 AAAGAAAGA-AGA--AATTGATAG
*
91291373 AAAAGAAGGAAGAAATTGATAG
1 -AAAGAAAGAAGAAATTGATAG
91291395 AAAGAA
1 AAAGAA
91291401 GAAAAGTGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 16
0.66 0.05 0.29
Matches are distributed among these distances:
19 2 0.05
20 4 0.11
21 25 0.68
22 4 0.11
23 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.25, T:0.10
Consensus pattern (21 bp):
AAAGAAAGAAGAAATTGATAG
Found at i:91291361 original size:42 final size:42
Alignment explanation
Indices: 91291314--91291400 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
91291304 GCAAAAAGAG
*
91291314 GAAAATAGGGGAAAAAGAAAAGAAAGAAGAAATTGATAGAAA
1 GAAAATAGAGGAAAAAGAAAAGAAAGAAGAAATTGATAGAAA
*
91291356 GAAAATAGAGGAAAAAGAAAAGAAGGAAGAAATTGATAGAAA
1 GAAAATAGAGGAAAAAGAAAAGAAAGAAGAAATTGATAGAAA
91291398 GAA
1 GAA
91291401 GAAAAGTGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.64, C:0.00, G:0.26, T:0.09
Consensus pattern (42 bp):
GAAAATAGAGGAAAAAGAAAAGAAAGAAGAAATTGATAGAAA
Found at i:91292085 original size:33 final size:33
Alignment explanation
Indices: 91292048--91292117 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
91292038 CACCACAACC
91292048 ACTTCTTAGTTTTGCCATTGATCAATGTCACTA
1 ACTTCTTAGTTTTGCCATTGATCAATGTCACTA
*
91292081 ACTTCTTAGTTTTGCCATTGATCAATGTCAGTA
1 ACTTCTTAGTTTTGCCATTGATCAATGTCACTA
91292114 ACTT
1 ACTT
91292118 TAATACACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (33 bp):
ACTTCTTAGTTTTGCCATTGATCAATGTCACTA
Found at i:91293316 original size:21 final size:20
Alignment explanation
Indices: 91293290--91293328 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
91293280 GTGTGTTTTG
91293290 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
91293311 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
91293329 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Done.