Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 27 of 362
Found at i:7917191 original size:5 final size:5
Alignment explanation
Indices: 7917181--7917212 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
7917171 TAAATAAGAT
7917181 TATTA TATTA TATTA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TATTA TA
7917213 AATAAACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:7920294 original size:19 final size:19
Alignment explanation
Indices: 7920256--7920294 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7920246 AATTTTTTTT
* *
7920256 TTATAAATATATTAATCCA
1 TTATAAATATACTAAGCCA
*
7920275 TTATATATATACTAAGCCA
1 TTATAAATATACTAAGCCA
7920294 T
1 T
7920295 AAATCCTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (19 bp):
TTATAAATATACTAAGCCA
Found at i:7920603 original size:14 final size:15
Alignment explanation
Indices: 7920579--7920613 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
7920569 TATATATATT
7920579 ACCATATAAATACTA
1 ACCATATAAATACTA
7920594 ACCATA-AAATACTA
1 ACCATATAAATACTA
7920608 ATCCAT
1 A-CCAT
7920614 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:7921312 original size:41 final size:41
Alignment explanation
Indices: 7921281--7921567 Score: 416
Period size: 41 Copynumber: 7.0 Consensus size: 41
7921271 CTATATAAAA
* ** * * * *
7921281 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCG-ATTCATTT
1 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAAT-AATC
* * * * * *
7921322 CACCGGCA-CAAAGCCTGCTAGACATAAAGTCGGAATTAATT
1 CACCGGCATC-AAGCCTGCTAGGCATTAAGCCTGAAATAATC
7921363 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
7921404 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
7921445 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
*
7921486 CACCGGCATCAAGCCTGCTAGGCGTTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
7921527 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
1 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
7921568 TCATATACAA
Statistics
Matches: 229, Mismatches: 14, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
41 225 0.98
42 4 0.02
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (41 bp):
CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATC
Found at i:7921797 original size:64 final size:63
Alignment explanation
Indices: 7921679--7921859 Score: 262
Period size: 64 Copynumber: 2.9 Consensus size: 63
7921669 GCAAACAAAC
*
7921679 ATTCGAACCACATATGT-AT-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCTA
1 ATTCGAACCACATATGTAATAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCTA
7921740 T
63 T
7921741 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAA-TAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
* *
7921805 ATTTGAACCACATATGTATATAAAATTCATACATTAAATACAGCTCAAGAACTTT
1 ATTCGAACCACATATGTA-ATAAAATTCATACATTAAATTCAGCTCAAGAACTTT
7921860 AAATATATAT
Statistics
Matches: 110, Mismatches: 3, Indels: 10
0.89 0.02 0.08
Matches are distributed among these distances:
62 17 0.15
63 6 0.05
64 77 0.70
65 10 0.09
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (63 bp):
ATTCGAACCACATATGTAATAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:7923802 original size:28 final size:28
Alignment explanation
Indices: 7923760--7923843 Score: 116
Period size: 28 Copynumber: 3.0 Consensus size: 28
7923750 GGAGGAAGCA
7923760 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
7923788 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
7923816 ATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
7923843 T
1 T
7923844 CTAGCAGCCA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 8 0.17
28 40 0.83
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:7924356 original size:21 final size:21
Alignment explanation
Indices: 7924332--7924375 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
7924322 TGATATTATC
*
7924332 TTAATCGTTGAAACTGATTAG
1 TTAATCGCTGAAACTGATTAG
7924353 TTAATCGCTGAAACTGATTAG
1 TTAATCGCTGAAACTGATTAG
7924374 TT
1 TT
7924376 TTAGGACGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (21 bp):
TTAATCGCTGAAACTGATTAG
Found at i:7931687 original size:41 final size:40
Alignment explanation
Indices: 7931554--7931777 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
7931544 AACCCAAGTA
* * * *
7931554 CCTTCGGGATTTA-ACCGGATATAG-CAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
7931593 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
7931633 CCTTCGGAACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AAATG
* * *
7931674 CCTTCGGGTCTTAGCCCGGATATTGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
7931714 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA-TG
*
7931755 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
7931778 CATCCGAATA
Statistics
Matches: 165, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 12 0.07
40 93 0.56
41 60 0.36
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:7931692 original size:81 final size:81
Alignment explanation
Indices: 7931584--7931777 Score: 309
Period size: 81 Copynumber: 2.4 Consensus size: 81
7931574 ATAGCAAATC
* * *
7931584 GCAC-AAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGAACTTAGC
1 GCACAAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGAACTTAGC
7931648 CCGGATATAGTCACTA
66 CCGGATATAGTCACTA
* * * *
7931664 GCACAAAATGCCTTCGGGTCTTAGCCCGGATATTGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 GCACAAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGAACTTAGC
7931729 CCGGATATAGTCACTA
66 CCGGATATAGTCACTA
*
7931745 GCACAAAGTGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAAATGCCTTCGGGTCTTAGCCCGGATAT
7931778 CATCCGAATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 4 0.04
81 101 0.96
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
GCACAAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGAACTTAGC
CCGGATATAGTCACTA
Found at i:7939701 original size:39 final size:39
Alignment explanation
Indices: 7939620--7939762 Score: 222
Period size: 39 Copynumber: 3.7 Consensus size: 39
7939610 ATGCAAAATC
*
7939620 GCACAAATGCCTTCGGG--TTAGCCCGGATATAGTAACT
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
7939657 CGCACAAATGCCTTCGGGACTTAG-CCGGATATAGTCACT
1 -GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
7939696 AGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
1 -GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
*
7939736 GCACAAATGCCTTC-GGTCTTAGCCCGG
1 GCACAAATGCCTTCGGGACTTAGCCCGG
7939763 TATCATCCGA
Statistics
Matches: 99, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
38 29 0.29
39 51 0.52
40 19 0.19
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
Found at i:7941860 original size:17 final size:18
Alignment explanation
Indices: 7941833--7941870 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
7941823 ATACTACTTC
7941833 TCTTCTCATCTTTTCTTT
1 TCTTCTCATCTTTTCTTT
7941851 TCTT-TCATCTTTTCTTT
1 TCTTCTCATCTTTTCTTT
7941868 TCT
1 TCT
7941871 CCATAGCCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.68
Consensus pattern (18 bp):
TCTTCTCATCTTTTCTTT
Found at i:7942998 original size:28 final size:26
Alignment explanation
Indices: 7942952--7943011 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
7942942 AGAGGAAGCA
* *
7942952 TTCTGGTGGCCCTGCCACAATTATCTG
1 TTCTGGTGACCCTGCCAC-ACTATCTG
* *
7942979 TATCTGGTGACTCTGTCACACTATCTG
1 T-TCTGGTGACCCTGCCACACTATCTG
7943006 TTCTGG
1 TTCTGG
7943012 CAGCCATGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 5 0.18
27 9 0.32
28 14 0.50
ACGTcount: A:0.15, C:0.27, G:0.22, T:0.37
Consensus pattern (26 bp):
TTCTGGTGACCCTGCCACACTATCTG
Found at i:7951936 original size:47 final size:49
Alignment explanation
Indices: 7951820--7951998 Score: 205
Period size: 47 Copynumber: 3.8 Consensus size: 49
7951810 TGTAACCCGC
* * * *
7951820 CCATAAGTGAACTCTGACTCAACTCAACGAGCTCGG--GC-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
7951866 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-AGTTCACAT
* *
7951916 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
7951960 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
7951999 TTCAACCATC
Statistics
Matches: 114, Mismatches: 8, Indels: 19
0.81 0.06 0.13
Matches are distributed among these distances:
43 3 0.03
44 5 0.04
45 1 0.01
46 36 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
Found at i:7951988 original size:94 final size:93
Alignment explanation
Indices: 7951828--7951998 Score: 288
Period size: 94 Copynumber: 1.8 Consensus size: 93
7951818 GCCCATAAGT
* * *
7951828 GAACTCTGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
7951893 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
7951921 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGAC-GTTCACATCCATAAGTGAACTCGGACTCAACTCA
7951986 ACGAGTTCGGATG
65 ACGAGTTCGGATG
7951999 TTCAACCATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
93 27 0.38
94 45 0.62
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:7954414 original size:11 final size:11
Alignment explanation
Indices: 7954398--7954424 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7954388 TGAATAGATT
7954398 AAGTATGTTCC
1 AAGTATGTTCC
7954409 AAGTATGTTCC
1 AAGTATGTTCC
7954420 AAGTA
1 AAGTA
7954425 GTAGTAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (11 bp):
AAGTATGTTCC
Found at i:7965521 original size:17 final size:16
Alignment explanation
Indices: 7965497--7965535 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
7965487 TTTATTTATC
7965497 ACTTATAAGTAATATCTT
1 ACTTATAA--AATATCTT
7965515 A-TTATAAAATATCTT
1 ACTTATAAAATATCTT
7965530 ACTTAT
1 ACTTAT
7965536 TTTATATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.45
16 4 0.20
17 6 0.30
18 1 0.05
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.46
Consensus pattern (16 bp):
ACTTATAAAATATCTT
Found at i:7967037 original size:2 final size:2
Alignment explanation
Indices: 7967030--7967070 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7967020 TGCTAGTGAC
7967030 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
7967071 TGACGGAGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7971928 original size:13 final size:13
Alignment explanation
Indices: 7971910--7971936 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7971900 CTATTGTTTT
7971910 GTTGTTAGTATAA
1 GTTGTTAGTATAA
7971923 GTTGTTAGTATAA
1 GTTGTTAGTATAA
7971936 G
1 G
7971937 AAGATGTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (13 bp):
GTTGTTAGTATAA
Found at i:7985014 original size:16 final size:16
Alignment explanation
Indices: 7984990--7985022 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7984980 GTAGGGAGAG
7984990 AAGTAAAACTTCCTGA
1 AAGTAAAACTTCCTGA
*
7985006 AAGTGAAACTTCCTGA
1 AAGTAAAACTTCCTGA
7985022 A
1 A
7985023 TGATTAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (16 bp):
AAGTAAAACTTCCTGA
Found at i:8001198 original size:16 final size:17
Alignment explanation
Indices: 8001160--8001198 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8001150 TTTTTCTTAA
8001160 GTTTTTAAGACTCATTC
1 GTTTTTAAGACTCATTC
* *
8001177 GTTTTTAAGATTCATTT
1 GTTTTTAAGACTCATTC
8001194 GTTTT
1 GTTTT
8001199 CCTTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.56
Consensus pattern (17 bp):
GTTTTTAAGACTCATTC
Found at i:8011316 original size:49 final size:49
Alignment explanation
Indices: 8011122--8011381 Score: 175
Period size: 49 Copynumber: 5.5 Consensus size: 49
8011112 TGTGCTAGTA
* * * * *
8011122 TAAGACATGTCTGGGACATG-CATCGGCCAC-AT-TATGAGATCCAGTG
1 TAAGACCTGTCTGGGACATGACATCTGCCTCGATATATGAAAGCCAGTG
* * * * *
8011168 TATGACATGTCTGGGACATG-CATCGGCCTCGAGATAT-ACAAGCTAGTG
1 TAAGACCTGTCTGGGACATGACATCTGCCTCGATATATGA-AAGCCAGTG
* * * * * * * * *
8011216 TAAGACCTGTCTGAGACATGGCGTCAG-CTTG--CTGTG--TGTCAGTG
1 TAAGACCTGTCTGGGACATGACATCTGCCTCGATATATGAAAGCCAGTG
* *
8011260 TAAGACCTGTCTGGGACATGGCATC-GACAC-CGATATATGAGAGCCAGTG
1 TAAGACCTGTCTGGGACATGACATCTG-C-CTCGATATATGAAAGCCAGTG
* **
8011309 TAAGACCTGTCTGGGACACGACATCTGCCTCGATATATGAAAGTTAGTG
1 TAAGACCTGTCTGGGACATGACATCTGCCTCGATATATGAAAGCCAGTG
* *
8011358 TAAGACCTATCTGGGACATAACAT
1 TAAGACCTGTCTGGGACATGACAT
8011382 TGACTTTGAT
Statistics
Matches: 168, Mismatches: 32, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 28 0.17
45 1 0.01
46 31 0.18
47 5 0.03
48 30 0.18
49 71 0.42
50 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (49 bp):
TAAGACCTGTCTGGGACATGACATCTGCCTCGATATATGAAAGCCAGTG
Found at i:8039819 original size:9 final size:9
Alignment explanation
Indices: 8039807--8039949 Score: 144
Period size: 9 Copynumber: 16.0 Consensus size: 9
8039797 TATTTGATAT
*
8039807 CATAATTTA
1 CATAACTTA
8039816 CATAACTTA
1 CATAACTTA
* *
8039825 CAGAACGTA
1 CATAACTTA
8039834 CATAACTTA
1 CATAACTTA
*
8039843 TATAACTTA
1 CATAACTTA
8039852 CATAACTTA
1 CATAACTTA
* *
8039861 TATAACATA
1 CATAACTTA
8039870 CATAACTTA
1 CATAACTTA
*
8039879 TATAACTTA
1 CATAACTTA
* *
8039888 TATAACATA
1 CATAACTTA
8039897 CATAACTTA
1 CATAACTTA
*
8039906 TATAACTTA
1 CATAACTTA
* *
8039915 TATAATTTA
1 CATAACTTA
* *
8039924 GATAA-ATA
1 CATAACTTA
*
8039932 TATAACTTA
1 CATAACTTA
8039941 CATAACTTA
1 CATAACTTA
8039950 TATGTTTCTA
Statistics
Matches: 111, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
8 6 0.05
9 105 0.95
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:8050145 original size:17 final size:17
Alignment explanation
Indices: 8050125--8050202 Score: 52
Period size: 17 Copynumber: 4.5 Consensus size: 17
8050115 AAGGAACTAC
8050125 AAAAAATAAATAAAATA
1 AAAAAATAAATAAAATA
* *
8050142 AAAATAT-ATTCAAAATA
1 AAAAAATAAAT-AAAATA
* **
8050159 CAAAAATAAATTTAATAA
1 AAAAAATAAATAAAAT-A
*
8050177 AATAAAATAAAT-AGATA
1 AA-AAAATAAATAAAATA
8050194 AATAAAATA
1 AA-AAAATA
8050203 TTTTTTAAGC
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
16 2 0.04
17 30 0.64
18 6 0.13
19 9 0.19
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (17 bp):
AAAAAATAAATAAAATA
Found at i:8050824 original size:6 final size:6
Alignment explanation
Indices: 8050808--8050839 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
8050798 GTGGAATTGT
8050808 GAAAGGG GAAAGG GAAAGG GAAAGG GAAAGG G
1 GAAA-GG GAAAGG GAAAGG GAAAGG GAAAGG G
8050840 CCTTGGAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 21 0.84
7 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (6 bp):
GAAAGG
Found at i:8052024 original size:4 final size:4
Alignment explanation
Indices: 8052015--8052048 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
8052005 TTAACCAAGC
* *
8052015 TATT TATT TATT TGTT TGTT TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TATT TATT TA
8052049 AACGAGTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:8052207 original size:13 final size:13
Alignment explanation
Indices: 8052189--8052214 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8052179 TTATTTAAGT
8052189 AAACTAAATATAA
1 AAACTAAATATAA
8052202 AAACTAAATATAA
1 AAACTAAATATAA
8052215 GAATTAGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (13 bp):
AAACTAAATATAA
Found at i:8052299 original size:28 final size:28
Alignment explanation
Indices: 8052268--8052324 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
8052258 AGAAAAACAC
8052268 ATGCAAAAATAAAGTATGGCATGATCCA
1 ATGCAAAAATAAAGTATGGCATGATCCA
8052296 ATGCAAAAATAAAGTATGGCATGATCCA
1 ATGCAAAAATAAAGTATGGCATGATCCA
8052324 A
1 A
8052325 AATTCCCCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (28 bp):
ATGCAAAAATAAAGTATGGCATGATCCA
Found at i:8053877 original size:28 final size:30
Alignment explanation
Indices: 8053817--8053886 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
8053807 AGAAACAAAT
8053817 TATATACATAAATAAATTTAAAAGAATATA
1 TATATACATAAATAAATTTAAAAGAATATA
*
8053847 TATATACATAAATAGATTTAAAAGAA-A-A
1 TATATACATAAATAAATTTAAAAGAATATA
*
8053875 TATTTACATAAA
1 TATATACATAAA
8053887 ATAATATGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 12 0.32
29 1 0.03
30 25 0.66
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (30 bp):
TATATACATAAATAAATTTAAAAGAATATA
Found at i:8054896 original size:15 final size:14
Alignment explanation
Indices: 8054862--8054895 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8054852 GCAACAAGAT
*
8054862 AAAAAATTAAAGGA
1 AAAAAATGAAAGGA
*
8054876 GAAAAATGAAAGGA
1 AAAAAATGAAAGGA
8054890 AAAAAA
1 AAAAAA
8054896 AGTAGTCATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.09
Consensus pattern (14 bp):
AAAAAATGAAAGGA
Found at i:8055395 original size:17 final size:18
Alignment explanation
Indices: 8055370--8055404 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8055360 ATTTTTATTA
8055370 TTTTGGTTTTCT-TAATG
1 TTTTGGTTTTCTGTAATG
*
8055387 TTTTTGTTTTCTGTAATG
1 TTTTGGTTTTCTGTAATG
8055405 GGCCCGGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.11, C:0.06, G:0.17, T:0.66
Consensus pattern (18 bp):
TTTTGGTTTTCTGTAATG
Found at i:8057359 original size:35 final size:35
Alignment explanation
Indices: 8057320--8057391 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 35
8057310 GTCTAGGATC
* *
8057320 GCATATCTTTTAAGATCCCCTTCCATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
* * * *
8057355 GCATATCTTTGAATATTACTTTCTATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
8057390 GC
1 GC
8057392 TCCGGAGATG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.26, C:0.24, G:0.10, T:0.40
Consensus pattern (35 bp):
GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
Found at i:8058082 original size:19 final size:19
Alignment explanation
Indices: 8058058--8058103 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
8058048 TAAACAAGCC
8058058 CTAGCCAAGTCATTCTTTT
1 CTAGCCAAGTCATTCTTTT
8058077 CTAGCCAAGTCATTCTTTT
1 CTAGCCAAGTCATTCTTTT
*
8058096 CTTGCCAA
1 CTAGCCAA
8058104 TCCTTCGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.11, T:0.39
Consensus pattern (19 bp):
CTAGCCAAGTCATTCTTTT
Found at i:8062208 original size:46 final size:46
Alignment explanation
Indices: 8062141--8062313 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
8062131 AACCCGCCCC
* *
8062141 TAAGTGATCTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* * * * *
8062187 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCATCCA
* * *
8062233 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* *
8062280 TAAGTGAACTCGAACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8062314 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 2 0.02
46 65 0.63
47 34 0.33
48 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:8065830 original size:35 final size:35
Alignment explanation
Indices: 8065791--8065860 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
8065781 CTAGGATCGT
8065791 ATATCTTTGAAGATCT-CCTTCCATATTTGCCAAGC
1 ATATCTTTGAAGAT-TACCTTCCATATTTGCCAAGC
*
8065826 ATATCTTTGAAGATTACTTTCCATATTTGCCAAGC
1 ATATCTTTGAAGATTACCTTCCATATTTGCCAAGC
8065861 TCCGGAGATG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
34 1 0.03
35 32 0.97
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (35 bp):
ATATCTTTGAAGATTACCTTCCATATTTGCCAAGC
Found at i:8067677 original size:20 final size:18
Alignment explanation
Indices: 8067629--8067682 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 18
8067619 AAAAATAAAT
*
8067629 AAAATAAAAATATATTTG
1 AAAATAAAAATAAATTTG
8067647 AAAATACAAAAATAAATTTAAG
1 AAAAT--AAAAATAAATTT--G
8067669 AAAAT-AAAATAAAT
1 AAAATAAAAATAAAT
8067683 GAATAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 5 0.16
19 9 0.29
20 11 0.35
22 6 0.19
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.26
Consensus pattern (18 bp):
AAAATAAAAATAAATTTG
Found at i:8069905 original size:25 final size:25
Alignment explanation
Indices: 8069857--8069907 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
8069847 TGCAGAAAAA
* ** *
8069857 ACTAAACCCTACAACTATGGAGAAG
1 ACTAAACCCTAAAAAGATGAAGAAG
8069882 ACTAAACCCTAAAAAGATGAAGAAG
1 ACTAAACCCTAAAAAGATGAAGAAG
8069907 A
1 A
8069908 AACTAAGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.51, C:0.20, G:0.16, T:0.14
Consensus pattern (25 bp):
ACTAAACCCTAAAAAGATGAAGAAG
Found at i:8071303 original size:30 final size:30
Alignment explanation
Indices: 8071269--8071339 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 30
8071259 TATACTAGGC
**
8071269 CGTGTCCTTCACACGGCTAAGACACACGGT
1 CGTGTCCTTCACACGGCTAAGACACACAAT
*
8071299 CGTGTCCTTCACACGGCTGAGACACACAAT
1 CGTGTCCTTCACACGGCTAAGACACACAAT
8071329 CGTGTCTCTTC
1 CGTGTC-CTTC
8071340 CCGTGTGTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 33 0.89
31 4 0.11
ACGTcount: A:0.21, C:0.34, G:0.21, T:0.24
Consensus pattern (30 bp):
CGTGTCCTTCACACGGCTAAGACACACAAT
Found at i:8072342 original size:46 final size:47
Alignment explanation
Indices: 8072145--8072457 Score: 245
Period size: 46 Copynumber: 6.6 Consensus size: 47
8072135 GTAAGTTGTC
* *
8072145 GATGCCATATCCCAGACATGGTCTTACACTGGCTATCATCACCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA-CATC-TCGAGGCT
* * * * *
8072194 AATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAATCG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-GCT-ACAT-CTCGAGGCT
* *
8072244 GATGTCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA-GCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCG-AGGCT
* *
8072290 GATG-CATGTCCCAGACAT-GTCTTATACTGGCTTACGTCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATCTCGAGGCT
* * * * *
8072336 GATG-CATGTCCCAGACAT-GTCCTACACTAGC-ACTATTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTAC-A-TCTCGAGGCT
* * * *
8072382 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGG-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-ACAT-CTCGAGGCT
8072429 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 -GATGCCATGTCCCAGACATGGTCTTACACT
8072458 ATTCCACAAT
Statistics
Matches: 218, Mismatches: 29, Indels: 37
0.77 0.10 0.13
Matches are distributed among these distances:
44 13 0.06
45 18 0.08
46 69 0.32
47 28 0.13
48 19 0.09
49 31 0.14
50 32 0.15
51 7 0.03
52 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCGAGGCT
Found at i:8072400 original size:138 final size:143
Alignment explanation
Indices: 8072145--8072411 Score: 350
Period size: 138 Copynumber: 1.9 Consensus size: 143
8072135 GTAAGTTGTC
8072145 GATGCCATATCCCAGACATGGTCTTACACTGGCTATCATCACCGAGGCTAATGCCATGTCCCAGA
1 GATGCCATATCCCAGACATGGTCTTACACTGGCTATCATCACCGAGGCTAATGCCATGTCCCAGA
* * * *
8072210 CATGGTCTTACACTAGCTCTCACATAATCGTGCCGATGTCATGTCCCAGACATGGTCTTACACTG
66 CATGGTCCTACACTAGCACT--CATAATCATGCCGATGCCATGTCCCAGACATGGTCTTACACTG
8072275 ACACATCTCGTAGCT
129 ACACATCTCGTAGCT
* * * * *
8072290 GATG-CATGTCCCAGACAT-GTCTTATACTGGCT-TACGTC-TCGAGGCTGATG-CATGTCCCAG
1 GATGCCATATCCCAGACATGGTCTTACACTGGCTAT-CATCACCGAGGCTAATGCCATGTCCCAG
**
8072350 ACAT-GTCCTACACTAGCACT-ATTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACT
65 ACATGGTCCTACACTAGCACTCATAATC-ATGCCGATGCCATGTCCCAGACATGGTCTTACACT
8072412 AGCTCTCATA
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
137 4 0.04
138 33 0.30
140 14 0.13
141 14 0.13
142 11 0.10
143 16 0.15
144 13 0.12
145 4 0.04
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (143 bp):
GATGCCATATCCCAGACATGGTCTTACACTGGCTATCATCACCGAGGCTAATGCCATGTCCCAGA
CATGGTCCTACACTAGCACTCATAATCATGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
ACATCTCGTAGCT
Found at i:8072438 original size:94 final size:94
Alignment explanation
Indices: 8072195--8072458 Score: 312
Period size: 94 Copynumber: 2.8 Consensus size: 94
8072185 ACCGAGGCTA
*
8072195 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAATCGTGCCGATGTCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATAATCGTGGCGATG-CATGTCCCAGA
* *
8072260 CATGGTCTTACACT-GACACATCTCGTAGCTG
64 CAT-GTCTTACACTAGACACATCTCATAGCCG
* * * * *
8072291 ATG-CATGTCCCAGACAT-GTCTTATACTGGCT-TACGT-CTCGAGGCTGATGCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATAATCGTGGC-GATGCATGTCCCAGAC
*
8072352 ATGTCCTACACTAG-CACTATTCTCA-ATGCCG
65 ATGTCTTACACTAGACAC-A-TCTCATA-GCCG
8072383 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGTCGATGCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATAATCGTGG-CGATGCATGTCCCAGAC
8072446 ATGTCTTACACTA
65 ATGTCTTACACTA
8072459 TTCCACAATA
Statistics
Matches: 143, Mismatches: 15, Indels: 22
0.79 0.08 0.12
Matches are distributed among these distances:
90 12 0.08
91 22 0.15
92 17 0.12
93 15 0.10
94 57 0.40
95 17 0.12
96 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATAATCGTGGCGATGCATGTCCCAGACA
TGTCTTACACTAGACACATCTCATAGCCG
Found at i:8074865 original size:52 final size:52
Alignment explanation
Indices: 8074780--8074884 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
8074770 CTTCAATGCA
* *
8074780 AATACTCTGGAGTAGGGAACTAATTAATGAATTTAGGCCAATAAGAGGTATT
1 AATACTCTGGAGTAGGGAACTAAGTAATAAATTTAGGCCAATAAGAGGTATT
*
8074832 AATACTCTGGCGTAGGGAACTAAGTAATAAATTTAGGCCAATAAGAGGTATT
1 AATACTCTGGAGTAGGGAACTAAGTAATAAATTTAGGCCAATAAGAGGTATT
8074884 A
1 A
8074885 GGAAAGGAGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (52 bp):
AATACTCTGGAGTAGGGAACTAAGTAATAAATTTAGGCCAATAAGAGGTATT
Found at i:8079319 original size:18 final size:18
Alignment explanation
Indices: 8079296--8079330 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8079286 TAATAAATAA
* *
8079296 ATATTTTAAAATTTTTAT
1 ATATTTAAAAAATTTTAT
8079314 ATATTTAAAAAATTTTA
1 ATATTTAAAAAATTTTA
8079331 CAGCCACTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATATTTAAAAAATTTTAT
Found at i:8079545 original size:29 final size:30
Alignment explanation
Indices: 8079512--8079599 Score: 83
Period size: 29 Copynumber: 2.9 Consensus size: 30
8079502 TAACCTTATA
* *
8079512 AAAATATTCAAATGA-GGATCAAACATTTC-
1 AAAATAGTCAAATGAGGGCT-AAACATTTCT
*
8079541 AAAATGGTCAAATGAGGGCTAAACATTTCT
1 AAAATAGTCAAATGAGGGCTAAACATTTCT
* *
8079571 AAAAGT-GCTCAAATAAGGGTTAAACATTT
1 AAAA-TAG-TCAAATGAGGGCTAAACATTT
8079600 TTTAAAGTGT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
29 22 0.44
30 8 0.16
31 20 0.40
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.27
Consensus pattern (30 bp):
AAAATAGTCAAATGAGGGCTAAACATTTCT
Found at i:8079595 original size:31 final size:31
Alignment explanation
Indices: 8079532--8079617 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 31
8079522 AATGAGGATC
* *
8079532 AAACATTTC-AAAA-TGGTCAAATGAGGGCT
1 AAACATTTCTAAAAGTGCTCAAATAAGGGCT
*
8079561 AAACATTTCTAAAAGTGCTCAAATAAGGGTT
1 AAACATTTCTAAAAGTGCTCAAATAAGGGCT
* * *
8079592 AAACATTTTTTAAAGTGTTCAAATAA
1 AAACATTTCTAAAAGTGCTCAAATAA
8079618 AGACTTCTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.18
30 4 0.08
31 36 0.73
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (31 bp):
AAACATTTCTAAAAGTGCTCAAATAAGGGCT
Found at i:8081288 original size:44 final size:43
Alignment explanation
Indices: 8081221--8081330 Score: 113
Period size: 44 Copynumber: 2.6 Consensus size: 43
8081211 ACATTTTCAC
* * *
8081221 TAAGATAAATTAAAACATCTTCACCAAAAGAAAAGAACAGTA-AA
1 TAAGATAATTTTAAACATATTCACCAAAAGAAAA-AACA-TATAA
* * *
8081265 TAAGATAATTTTAAACATTTTCA-C-AAATAAAAAATATATAA
1 TAAGATAATTTTAAACATATTCACCAAAAGAAAAAACATATAA
8081306 -AA-ATAATTTTAAACATATTCACCAA
1 TAAGATAATTTTAAACATATTCACCAA
8081331 TAAATAAAAG
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
39 18 0.32
40 5 0.09
41 6 0.11
42 7 0.12
43 1 0.02
44 20 0.35
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.27
Consensus pattern (43 bp):
TAAGATAATTTTAAACATATTCACCAAAAGAAAAAACATATAA
Found at i:8082413 original size:16 final size:15
Alignment explanation
Indices: 8082394--8082452 Score: 65
Period size: 13 Copynumber: 4.1 Consensus size: 15
8082384 TTTATTTTTT
8082394 ATTATTATTCTAATAA
1 ATTATTATT-TAATAA
8082410 ATTATTATTT-A-AA
1 ATTATTATTTAATAA
8082423 ATT-TTATTATAATAA
1 ATTATTATT-TAATAA
8082438 A--ATTATTTAATAA
1 ATTATTATTTAATAA
8082451 AT
1 AT
8082453 AAATATACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
12 5 0.13
13 13 0.34
14 7 0.18
15 4 0.11
16 9 0.24
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
ATTATTATTTAATAA
Found at i:8082452 original size:28 final size:27
Alignment explanation
Indices: 8082345--8082447 Score: 79
Period size: 28 Copynumber: 3.9 Consensus size: 27
8082335 GATATTTTTA
* * *
8082345 TTATTTTAATAAAATGTTATTCAAAATT
1 TTATTATAAT-AAATATTATTTAAAATT
* ***
8082373 TCATTAT-AT-AAT-TTATTTTTTATT
1 TTATTATAATAAATATTATTTAAAATT
*
8082397 ATTATTCTAATAAATTATTATTTAAAATT
1 -TTATTATAATAAA-TATTATTTAAAATT
8082426 TTATTATAATAAA-ATTATTTAA
1 TTATTATAATAAATATTATTTAA
8082448 TAAATAAATA
Statistics
Matches: 58, Mismatches: 12, Indels: 12
0.71 0.15 0.15
Matches are distributed among these distances:
24 8 0.14
25 8 0.14
26 11 0.19
27 4 0.07
28 18 0.31
29 9 0.16
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (27 bp):
TTATTATAATAAATATTATTTAAAATT
Found at i:8083991 original size:21 final size:21
Alignment explanation
Indices: 8083939--8083991 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
8083929 ACGAATTCAA
8083939 TTAAT-TTTAATTATATTTTT
1 TTAATATTTAATTATATTTTT
* * *
8083959 TAAAAATATAATTAT-TTTTAT
1 TTAATATTTAATTATATTTT-T
8083980 TTAATATTTAAT
1 TTAATATTTAAT
8083992 AAAGATATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTAATATTTAATTATATTTTT
Found at i:8085344 original size:31 final size:32
Alignment explanation
Indices: 8085309--8085384 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 32
8085299 AGAAAAAAAC
*
8085309 TTAATAATTCAACGACTTAAAT-AAATTTTTT
1 TTAATAATTCAACGACTTAAATGAAAATTTTT
* *
8085340 TTAATAATTCAATGATTTAAATGAAAATTTTT
1 TTAATAATTCAACGACTTAAATGAAAATTTTT
**
8085372 CAAATAATTCAAC
1 TTAATAATTCAAC
8085385 AATCATTGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
31 20 0.53
32 18 0.47
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.42
Consensus pattern (32 bp):
TTAATAATTCAACGACTTAAATGAAAATTTTT
Found at i:8086070 original size:12 final size:12
Alignment explanation
Indices: 8086053--8086085 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
8086043 TGGCCCTCCG
8086053 ATATTAATTTTT
1 ATATTAATTTTT
8086065 ATATT-ATTTTT
1 ATATTAATTTTT
8086076 ATA-TAATTTT
1 ATATTAATTTT
8086086 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:8086207 original size:30 final size:30
Alignment explanation
Indices: 8086171--8086235 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
8086161 TAACTTAACA
8086171 AACAAATGCTTCTAAAATAATAACAAAATT
1 AACAAATGCTTCTAAAATAATAACAAAATT
* * *
8086201 AACAAATGTTTTTAAGATAATAACAAAATT
1 AACAAATGCTTCTAAAATAATAACAAAATT
8086231 AACAA
1 AACAA
8086236 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.28
Consensus pattern (30 bp):
AACAAATGCTTCTAAAATAATAACAAAATT
Found at i:8089476 original size:36 final size:36
Alignment explanation
Indices: 8089429--8089501 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
8089419 TTTCCATCAG
8089429 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
1 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
8089465 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
1 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
8089501 T
1 T
8089502 ATTTTTGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (36 bp):
TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
Found at i:8093313 original size:42 final size:41
Alignment explanation
Indices: 8093253--8093340 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 41
8093243 ATATGATTCC
*
8093253 TTTTTTGTTTGAACTGGATGTTGCTTTCCCAAGTTGCTTCA
1 TTTTTTGTCTGAACTGGATGTTGCTTTCCCAAGTTGCTTCA
*
8093294 TTTTTTGTCTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCC
1 TTTTTTGTCTGAA-CTGGATGTTGCTTTCCCAAGTTGCTTCA
8093336 TTTTT
1 TTTTT
8093341 GGTTTTTTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 12 0.27
42 32 0.73
ACGTcount: A:0.12, C:0.19, G:0.18, T:0.50
Consensus pattern (41 bp):
TTTTTTGTCTGAACTGGATGTTGCTTTCCCAAGTTGCTTCA
Found at i:8093943 original size:22 final size:23
Alignment explanation
Indices: 8093915--8093962 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
8093905 AATAACATAG
* *
8093915 TTTTAATAAATGTAGA-AAAAAA
1 TTTTAATAAATGAAAAGAAAAAA
8093937 TTTTAATAAATGAAAAGAAAAAA
1 TTTTAATAAATGAAAAGAAAAAA
8093960 TTT
1 TTT
8093963 GAACTGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (23 bp):
TTTTAATAAATGAAAAGAAAAAA
Found at i:8099332 original size:2 final size:2
Alignment explanation
Indices: 8099325--8099349 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8099315 CTCAAACCTA
8099325 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8099350 AGGAGGATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8100223 original size:20 final size:20
Alignment explanation
Indices: 8100187--8100239 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
8100177 GTAACATATA
* *
8100187 TAGAGTTTGCATATTTAATC
1 TAGAGTTCGCATATTTAACC
* *
8100207 TAGGGTTCGCATGTTTAACC
1 TAGAGTTCGCATATTTAACC
8100227 TAGAGTTCGCATA
1 TAGAGTTCGCATA
8100240 AAACAAATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (20 bp):
TAGAGTTCGCATATTTAACC
Found at i:8100607 original size:76 final size:77
Alignment explanation
Indices: 8100516--8100662 Score: 226
Period size: 77 Copynumber: 1.9 Consensus size: 77
8100506 GATAAATTCT
* * *
8100516 ATTAGGATAAAAAGATAAAAATAT-ATGAAATTTTCATTCTATTT-AAATTTTAAAGAAGGATAA
1 ATTAGGATAAAAAGATAAAAAGATGATGAAATTTTAATTCTATTTAAAATTTGAAA-AAGGATAA
8100579 GATATGATTTCAA
65 GATATGATTTCAA
* *
8100592 ATTAGGATAAGAAGATAAAAAGATGATGGAATTTTAATTCTATTTAAAATTTGAAAAAGGATAAG
1 ATTAGGATAAAAAGATAAAAAGATGATGAAATTTTAATTCTATTTAAAATTTGAAAAAGGATAAG
8100657 ATATGA
66 ATATGA
8100663 ATTCTAGTTG
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
76 22 0.34
77 33 0.52
78 9 0.14
ACGTcount: A:0.49, C:0.03, G:0.15, T:0.33
Consensus pattern (77 bp):
ATTAGGATAAAAAGATAAAAAGATGATGAAATTTTAATTCTATTTAAAATTTGAAAAAGGATAAG
ATATGATTTCAA
Found at i:8102885 original size:16 final size:16
Alignment explanation
Indices: 8102838--8102885 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
8102828 CTATTTTTAA
8102838 ATATATTATATTATTTT
1 ATATATT-TATTATTTT
*
8102855 A-ATATTTGATGATTTT
1 ATATATTT-ATTATTTT
*
8102871 ATATATTTTTTATTT
1 ATATATTTATTATTT
8102886 GTTAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 1 0.04
16 18 0.69
17 7 0.27
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (16 bp):
ATATATTTATTATTTT
Found at i:8103005 original size:16 final size:17
Alignment explanation
Indices: 8102986--8103018 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8102976 TATAAATTAC
8102986 ATAATAT-ATATAAAAA
1 ATAATATAATATAAAAA
8103002 ATAATATAATATAAAAA
1 ATAATATAATATAAAAA
8103019 TTACAAACTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
ATAATATAATATAAAAA
Found at i:8121050 original size:40 final size:40
Alignment explanation
Indices: 8121006--8121087 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
8120996 TCACATCGCT
*
8121006 ACCGTTGTTTTTAACTTCACTAGAAGTATTATATTAATAA
1 ACCGTTGTTTTTAACTTCACTAGAAATATTATATTAATAA
8121046 ACCGTTGTTTTTAACTTCACTAGAAATATTATATTAATAA
1 ACCGTTGTTTTTAACTTCACTAGAAATATTATATTAATAA
8121086 AC
1 AC
8121088 ATATTGTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (40 bp):
ACCGTTGTTTTTAACTTCACTAGAAATATTATATTAATAA
Found at i:8122128 original size:22 final size:22
Alignment explanation
Indices: 8122096--8122142 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8122086 CAAATATCTT
* *
8122096 CACTCCCACCACCCCACTCAAC
1 CACTCCAACCACCCCACTAAAC
*
8122118 CACTCCAACCACCCTACTAAAC
1 CACTCCAACCACCCCACTAAAC
8122140 CAC
1 CAC
8122143 CCCACTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.57, G:0.00, T:0.11
Consensus pattern (22 bp):
CACTCCAACCACCCCACTAAAC
Found at i:8122142 original size:13 final size:13
Alignment explanation
Indices: 8122124--8122181 Score: 70
Period size: 13 Copynumber: 4.8 Consensus size: 13
8122114 CAACCACTCC
*
8122124 AACCACCCTACTA
1 AACCACCCCACTA
8122137 AACCACCCCACTA
1 AACCACCCCACTA
8122150 AACCA-CCC-C--
1 AACCACCCCACTA
8122159 AACCACCCCACTA
1 AACCACCCCACTA
*
8122172 AACCATCCCA
1 AACCACCCCA
8122182 ACCATTCCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 5 0.13
10 3 0.08
11 2 0.05
12 3 0.08
13 26 0.67
ACGTcount: A:0.38, C:0.53, G:0.00, T:0.09
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:8122142 original size:35 final size:35
Alignment explanation
Indices: 8122103--8122181 Score: 122
Period size: 35 Copynumber: 2.3 Consensus size: 35
8122093 CTTCACTCCC
* * *
8122103 ACCACCCCACTCAACCACTCCAACCACCCTACTAA
1 ACCACCCCACTAAACCACCCCAACCACCCCACTAA
8122138 ACCACCCCACTAAACCACCCCAACCACCCCACTAA
1 ACCACCCCACTAAACCACCCCAACCACCCCACTAA
*
8122173 ACCATCCCA
1 ACCACCCCA
8122182 ACCATTCCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.35, C:0.56, G:0.00, T:0.09
Consensus pattern (35 bp):
ACCACCCCACTAAACCACCCCAACCACCCCACTAA
Found at i:8122192 original size:22 final size:22
Alignment explanation
Indices: 8122137--8122185 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
8122127 CACCCTACTA
8122137 AACCACCCCACTAAACCACCCC
1 AACCACCCCACTAAACCACCCC
*
8122159 AACCACCCCACTAAACCATCCC
1 AACCACCCCACTAAACCACCCC
8122181 AACCA
1 AACCA
8122186 TTCCACTTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.39, C:0.55, G:0.00, T:0.06
Consensus pattern (22 bp):
AACCACCCCACTAAACCACCCC
Found at i:8122595 original size:19 final size:18
Alignment explanation
Indices: 8122558--8122599 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
8122548 GGAGAGAGTG
*
8122558 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
8122576 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
8122595 TTATT
1 TTATT
8122600 ACTAATAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:8124984 original size:13 final size:13
Alignment explanation
Indices: 8124966--8125005 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
8124956 AGTTTAGTAA
8124966 TATTTTTAAAAAG
1 TATTTTTAAAAAG
*
8124979 TATTTTTAAAAAA
1 TATTTTTAAAAAG
*
8124992 TATTTTTGAAAAG
1 TATTTTTAAAAAG
8125005 T
1 T
8125006 TTAGTTTAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (13 bp):
TATTTTTAAAAAG
Found at i:8125747 original size:11 final size:11
Alignment explanation
Indices: 8125733--8125758 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8125723 CTTTTTCTTC
8125733 TTTTTTAATTT
1 TTTTTTAATTT
8125744 TTTTTTAATTT
1 TTTTTTAATTT
8125755 TTTT
1 TTTT
8125759 AAGTTTTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTAATTT
Found at i:8125860 original size:22 final size:23
Alignment explanation
Indices: 8125825--8125869 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
8125815 TATTTGAAAT
8125825 GTTTTATAATATATATATTTTAA
1 GTTTTATAATATATATATTTTAA
*
8125848 GTTTTA-AATATATATTTTTTAA
1 GTTTTATAATATATATATTTTAA
8125870 ATTATTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (23 bp):
GTTTTATAATATATATATTTTAA
Found at i:8125975 original size:21 final size:21
Alignment explanation
Indices: 8125963--8126024 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 21
8125953 TTATTATTAG
8125963 TTTTATAATATTTTTAATTTA
1 TTTTATAATATTTTTAATTTA
*
8125984 TTTTATAATATTTTAAATTATGA
1 TTTTATAATATTTTTAATT-T-A
8126007 TTTT-TAAATTATTTTTAA
1 TTTTAT-AA-TATTTTTAA
8126025 AGATATTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 18 0.51
22 2 0.06
23 7 0.20
24 8 0.23
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTTATAATATTTTTAATTTA
Found at i:8126086 original size:19 final size:19
Alignment explanation
Indices: 8126062--8126103 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8126052 TATTTAAAAG
*
8126062 TTAAAAAAT-AATATTTTAT
1 TTAAAAAATGAA-ATTTTAA
8126081 TTAAAAAATGAAATTTTAA
1 TTAAAAAATGAAATTTTAA
8126100 TTAA
1 TTAA
8126104 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
TTAAAAAATGAAATTTTAA
Found at i:8126685 original size:40 final size:41
Alignment explanation
Indices: 8126641--8126725 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 41
8126631 GTGTTAGTTA
8126641 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATA-T
1 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
* *
8126681 TAATTTTTTAATTTTAGTACATATTTATAAATTTATATACT
1 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
8126722 TAAT
1 TAAT
8126726 ATATATTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
40 37 0.88
41 5 0.12
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (41 bp):
TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
Found at i:8126706 original size:20 final size:20
Alignment explanation
Indices: 8126643--8126706 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
8126633 GTTAGTTATA
*
8126643 ATTTTTTAATTTTAGTACAC
1 ATTTTTTAATTTTAGTACAT
** * *
8126663 ATTCATAAATTTATA-TA-TT
1 ATTTTTTAATTT-TAGTACAT
8126682 AATTTTTTAATTTTAGTACAT
1 -ATTTTTTAATTTTAGTACAT
8126703 ATTT
1 ATTT
8126707 ATAAATTTAT
Statistics
Matches: 31, Mismatches: 9, Indels: 8
0.65 0.19 0.17
Matches are distributed among these distances:
19 2 0.06
20 26 0.84
21 3 0.10
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (20 bp):
ATTTTTTAATTTTAGTACAT
Found at i:8126713 original size:20 final size:20
Alignment explanation
Indices: 8126650--8126714 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
8126640 ATAATTTTTT
* *
8126650 AATTTTAGTACACATTCATA
1 AATTTTAGTACATATTTATA
* * *
8126670 AATTTATA-TA-TTAATTTTTT
1 AATTT-TAGTACAT-ATTTATA
8126690 AATTTTAGTACATATTTATA
1 AATTTTAGTACATATTTATA
8126710 AATTT
1 AATTT
8126715 ATATACTTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
19 2 0.06
20 28 0.85
21 3 0.09
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.52
Consensus pattern (20 bp):
AATTTTAGTACATATTTATA
Found at i:8126736 original size:40 final size:40
Alignment explanation
Indices: 8126649--8126736 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
8126639 TATAATTTTT
* *
8126649 TAATTTTAGTACACATTCATAAATTTATATATTAATTTTT
1 TAATTTTAGTACACATTCATAAATTTATATATTAATTATA
* *
8126689 TAATTTTAGTACATATTTATAAATTTATATACTTAA-TATA
1 TAATTTTAGTACACATTCATAAATTTATATA-TTAATTATA
*
8126729 TATTTTTA
1 TAATTTTA
8126737 ATAGGTAAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 38 0.90
41 4 0.10
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (40 bp):
TAATTTTAGTACACATTCATAAATTTATATATTAATTATA
Found at i:8126852 original size:71 final size:71
Alignment explanation
Indices: 8126776--8126926 Score: 250
Period size: 71 Copynumber: 2.1 Consensus size: 71
8126766 TTAAAAAAAC
* *
8126776 TTAAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTT-AAAATTTATATATATTTAA
1 TTAAAAAATTAAATATATTAAAAAATGTTAAGTATAAACAATTTTAAAAATTTA-ATATATTCAA
8126840 TATATTT
65 TATATTT
*
8126847 TTAAAAAATTAAATATATTAAAAATTGTTAAGTATAAACAATTTTAAAAATTTAATATATTCAAT
1 TTAAAAAATTAAATATATTAAAAAATGTTAAGTATAAACAATTTTAAAAATTTAATATATTCAAT
8126912 ATATTT
66 ATATTT
*
8126918 TTTAAAAAT
1 TTAAAAAAT
8126927 ATATTTTAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
71 67 0.89
72 8 0.11
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.43
Consensus pattern (71 bp):
TTAAAAAATTAAATATATTAAAAAATGTTAAGTATAAACAATTTTAAAAATTTAATATATTCAAT
ATATTT
Found at i:8127009 original size:8 final size:8
Alignment explanation
Indices: 8126986--8127045 Score: 66
Period size: 8 Copynumber: 7.0 Consensus size: 8
8126976 AAACAATATT
*
8126986 TTTTAATA
1 TTTTAAAA
8126994 TATTTAAAA
1 T-TTTAAAA
8127003 TTTTAAAAAA
1 TTTT--AAAA
8127013 TTTTAAAA
1 TTTTAAAA
8127021 TTTTAAAA
1 TTTTAAAA
8127029 TTTTAAATA
1 TTTTAAA-A
*
8127038 TGTTAAAA
1 TTTTAAAA
8127046 GAAAATGTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
8 24 0.52
9 14 0.30
10 8 0.17
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (8 bp):
TTTTAAAA
Found at i:8127156 original size:77 final size:79
Alignment explanation
Indices: 8127014--8127159 Score: 199
Period size: 77 Copynumber: 1.9 Consensus size: 79
8127004 TTTAAAAAAT
* * * * **
8127014 TTTAAAATTTTAAAATTTTAAATATGTTAAAAGAAAATGTTGAGTATAACCAATTTTAATTTTTT
1 TTTAAAATATTAAAATTTTAAACATATTAAAAGAAAATGTTAAGTATAACCAATTTTAAAATTTT
8127079 AATAATTGAATATA
66 AATAATTGAATATA
*
8127093 TTTAAATATATTAAAATTTTGAACATATT-AAA-AAAAT-TTAAGTATAACCAATTTTAAAATTT
1 TTTAAA-ATATTAAAATTTTAAACATATTAAAAGAAAATGTTAAGTATAACCAATTTTAAAATTT
8127155 TAATA
65 TAATA
8127160 TATTTTTTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
77 27 0.46
78 5 0.08
79 9 0.15
80 18 0.31
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.43
Consensus pattern (79 bp):
TTTAAAATATTAAAATTTTAAACATATTAAAAGAAAATGTTAAGTATAACCAATTTTAAAATTTT
AATAATTGAATATA
Found at i:8129391 original size:30 final size:30
Alignment explanation
Indices: 8129355--8129456 Score: 111
Period size: 30 Copynumber: 3.4 Consensus size: 30
8129345 GCCGCAAAGC
*
8129355 AGTTCATATCACTCGGACATTAGCAGTTCA
1 AGTTCATATCACTCGGACATTAGCGGTTCA
** *
8129385 AGTTCATATCAC-CTGGACATGGGCGGTTCG
1 AGTTCATATCACTC-GGACATTAGCGGTTCA
8129415 AGTTCATATCA-TCCGGACA-TAGGCGGTTCA
1 AGTTCATATCACT-CGGACATTA-GCGGTTCA
*
8129445 AGTTCATTTCAC
1 AGTTCATATCAC
8129457 CCACAGCAAC
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
29 1 0.02
30 57 0.97
31 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (30 bp):
AGTTCATATCACTCGGACATTAGCGGTTCA
Found at i:8130189 original size:37 final size:37
Alignment explanation
Indices: 8130139--8130212 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
8130129 TCGAGTGTGT
*
8130139 ACACATCGTCAATATATTATTCAACATTCAAACTGTA
1 ACACATCATCAATATATTATTCAACATTCAAACTGTA
*
8130176 ACACATCATCAATATATTATTCGACATTCAAACTGTA
1 ACACATCATCAATATATTATTCAACATTCAAACTGTA
8130213 GGTAGCACAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (37 bp):
ACACATCATCAATATATTATTCAACATTCAAACTGTA
Found at i:8132838 original size:21 final size:21
Alignment explanation
Indices: 8132817--8132858 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8132807 CTCCACCAAA
*
8132817 TAAAATATTAATTTTTAAAAAT
1 TAAAAT-TTAATTTTAAAAAAT
*
8132839 TTAAATTTAATTTTAAAAAA
1 TAAAATTTAATTTTAAAAAA
8132859 CGTTTGAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAAAATTTAATTTTAAAAAAT
Found at i:8132875 original size:32 final size:32
Alignment explanation
Indices: 8132839--8132913 Score: 132
Period size: 32 Copynumber: 2.3 Consensus size: 32
8132829 TTTTAAAAAT
* *
8132839 TTAAATTTAATTTTAAAAAACGTTTGAATATC
1 TTAAAATTAATTTTAAAAAAAGTTTGAATATC
8132871 TTAAAATTAATTTTAAAAAAAGTTTGAATATC
1 TTAAAATTAATTTTAAAAAAAGTTTGAATATC
8132903 TTAAAATTAAT
1 TTAAAATTAAT
8132914 AATTTATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (32 bp):
TTAAAATTAATTTTAAAAAAAGTTTGAATATC
Found at i:8132878 original size:33 final size:33
Alignment explanation
Indices: 8132841--8132925 Score: 127
Period size: 32 Copynumber: 2.5 Consensus size: 33
8132831 TTAAAAATTT
*
8132841 AAATTTAATTTTAAAAAACGTTTGAATATCTTA
1 AAATTTAATTTTAAAAAAAGTTTGAATATCTTA
8132874 AAA-TTAATTTTAAAAAAAGTTTGAATATCTTA
1 AAATTTAATTTTAAAAAAAGTTTGAATATCTTA
8132906 AAATTAATAATTTATAAAAA
1 AAATT--TAATTT-TAAAAA
8132926 TTATATTTAA
Statistics
Matches: 47, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
32 31 0.66
33 4 0.09
35 6 0.13
36 6 0.13
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.40
Consensus pattern (33 bp):
AAATTTAATTTTAAAAAAAGTTTGAATATCTTA
Found at i:8132964 original size:13 final size:13
Alignment explanation
Indices: 8132937--8132971 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
8132927 TATATTTAAA
8132937 ATTTAAAA-A-AT
1 ATTTAAAATATAT
8132948 ATTTAAAATATAT
1 ATTTAAAATATAT
8132961 ATTTAAAATAT
1 ATTTAAAATAT
8132972 TATAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 8 0.36
12 1 0.05
13 13 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
ATTTAAAATATAT
Found at i:8133052 original size:24 final size:25
Alignment explanation
Indices: 8133006--8133053 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8132996 AGGTTATATC
*
8133006 TTTAAAAATAATATATTTTAAATAA
1 TTTAAAAATAATATATTTAAAATAA
* *
8133031 TTTAAAGATCATA-ATTTAAAATA
1 TTTAAAAATAATATATTTAAAATA
8133054 TTATGAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (25 bp):
TTTAAAAATAATATATTTAAAATAA
Found at i:8133162 original size:21 final size:20
Alignment explanation
Indices: 8133138--8133186 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 20
8133128 ATTTAAATGT
8133138 TTTATATTATTAAAAAATATA
1 TTTATATT-TTAAAAAATATA
*
8133159 TTTAAAATTTTAAAAAATATA
1 TTT-ATATTTTAAAAAATATA
8133180 TATTATA
1 T-TTATA
8133187 AAACATTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTATATTTTAAAAAATATA
Found at i:8133162 original size:114 final size:112
Alignment explanation
Indices: 8132920--8133178 Score: 312
Period size: 114 Copynumber: 2.3 Consensus size: 112
8132910 TAATAATTTA
*
8132920 TAAAAATTATATTTAAAATTTAAAAAATATTTAAAATATATATTTAAAATATTATAAAACAAATA
1 TAAAAAATATATTTAAAATTTAAAAAATATTTAAAATATATATTTAAAATATTATAAAACAAATA
*
8132985 ATAAATTTGAAAGGTTATATCTTTAAAAATAATATATTTTAAATAAT
66 ATAAATTTGAAAGGTCATATCTTTAAAAATAATATATTTTAAATAAT
* * *
8133032 TTAAAGATCATAATTTAAAATATTATGAAACAA-A-TTAAAA-A-ATATTTAAAATATTATGAAA
1 TAAAAAAT-AT-ATTTAAAAT-TTA--AAA-AATATTTAAAATATATATTTAAAATATTATAAAA
* * * *
8133093 CTAATAATAAATTTGAAAGGTCATATCTTTAAAATATTTAA-ATGTTTTATATTAT
60 CAAATAATAAATTTGAAAGGTCATATCTTTAAAA-A--TAATATATTTTAAATAAT
8133148 TAAAAAATATATTTAAAATTTTAAAAAATAT
1 TAAAAAATATATTTAAAA-TTTAAAAAATAT
8133179 ATATTATAAA
Statistics
Matches: 124, Mismatches: 11, Indels: 23
0.78 0.07 0.15
Matches are distributed among these distances:
111 2 0.02
112 9 0.07
113 2 0.02
114 71 0.57
115 8 0.06
116 23 0.19
117 7 0.06
118 2 0.02
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.40
Consensus pattern (112 bp):
TAAAAAATATATTTAAAATTTAAAAAATATTTAAAATATATATTTAAAATATTATAAAACAAATA
ATAAATTTGAAAGGTCATATCTTTAAAAATAATATATTTTAAATAAT
Found at i:8133279 original size:34 final size:35
Alignment explanation
Indices: 8133220--8133300 Score: 101
Period size: 34 Copynumber: 2.3 Consensus size: 35
8133210 TAATAATAAA
*
8133220 TAAAATAAATAAGAATAAAGACAAAACTTAAAAAAAG
1 TAAAA-AAA-AAGAATAAAGACAAAACTTAAAAAAAC
* *
8133257 TAAAAAAAAAGAAT-AGGACAAAAGTTAAAAAAAC
1 TAAAAAAAAAGAATAAAGACAAAACTTAAAAAAAC
*
8133291 AAAAAAAAAA
1 TAAAAAAAAA
8133301 AAACAAAGGA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
34 26 0.65
35 6 0.15
36 3 0.08
37 5 0.12
ACGTcount: A:0.74, C:0.05, G:0.09, T:0.12
Consensus pattern (35 bp):
TAAAAAAAAAGAATAAAGACAAAACTTAAAAAAAC
Found at i:8133301 original size:35 final size:35
Alignment explanation
Indices: 8133221--8133301 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
8133211 AATAATAAAT
* *
8133221 AAAATAAATAAGAATAAAGACAAAACTTAAAAAAA
1 AAAAAAAAAAAGAATAAAGACAAAACTTAAAAAAA
** * *
8133256 GTAAAAAAAAAGAAT-AGGACAAAAGTTAAAAAAA
1 AAAAAAAAAAAGAATAAAGACAAAACTTAAAAAAA
8133290 CAAAAAAAAAAA
1 -AAAAAAAAAAA
8133302 AACAAAGGAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
34 17 0.46
35 20 0.54
ACGTcount: A:0.75, C:0.05, G:0.09, T:0.11
Consensus pattern (35 bp):
AAAAAAAAAAAGAATAAAGACAAAACTTAAAAAAA
Found at i:8142258 original size:716 final size:728
Alignment explanation
Indices: 8140897--8143622 Score: 3328
Period size: 749 Copynumber: 3.7 Consensus size: 728
8140887 ATATTTTTCT
* *
8140897 ATTCAAGTTGACTTGAAAATGTTTATTAATAACATTGTACACACATATTTTAAGTCGAAAGTTCA
1 ATTCAAGTTGACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCA
* *
8140962 CTTGAAAGTTTAGAGCCAAATTTATTGGTAAGTTTGAAAAGAAAGTTACAATCTCTGA-AAATTT
66 CTTGAAAGTTTAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCT-ACAAATTT
* * * * *
8141026 TTTAAATATAAAGAAAAATATCCTTTGATTCTTCTCTCTGATTTGACTTTTATCTAAGGGTCGTT
130 CTTAAATACAAAGAAAAATATCCTTTGATTCTTCTCTCCGATTTGAC-TTGATC-CA---TC---
* * * * * *
8141091 TGACTTGATCTTAGACGAGTGTGGAGTGCTTCAAGTGTCATCTTGACTTGCTTTTAAAACAAGTT
187 T-A--TGATCTAAGAC-AGT-CGGAATGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTT
* * * * * * *
8141156 TGAACCTCTTTTCTTCAGTTGAAACAGA-TCGAACAACAACTTTCTTCAGAAACAACTTTTGGGT
247 TAAACCTCATGTCTTCAGTTGAAACAGATTC--A-AA-GA--GT-GT-AG--A-GAC--TT--GT
*
8141220 TCTTCTCCATAGCATGCAGTTGTC-AGTTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAAT
297 TCTTCTCCATAGCATGAAGTTGTCGA-TTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAAT
* *
8141284 AACATTTTATATTTAGATGCATTTCTCATTTCATTGGTTCATAACTACAAGTTAGTGAAAAATGC
361 AACATTTTATATTTAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGC
* *
8141349 CGATTAATTTTATGCAAAAATTGAAATTTGAACTTTCAATATGTTAGTGATCCCAAATTGTGCAA
426 CGATTAATTTTATGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAA
*
8141414 TCCTTCATTGCCAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAG
491 TCCTTCATTGTCAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAG
*
8141479 ATACACTTTTAAGCCTTGACTTCCTAGCAACAAATACTAAGGTATTCATACTAACACATGTTTTA
556 ATACACTTTTAAGCCTTGACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACATGTTTTA
* * *
8141544 CTATATTGAAAAAAAATTAAATTATATGTATTTATAACAATCTATTCAGTCCTTAAAATGTTAGT
621 CTATATTGAAAAAAAA-TAAATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAAT
*
8141609 GTAAGTATATGAATATTTTTTTCTATTTCCATACAAAACAACTTC
685 GTAAGTATATGAATA-TTTTTTCTATTGCCATACAAAACAACTTC
* *
8141654 GTTCAAGTTGACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTTA
1 ATTCAAGTTGACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCA
8141719 CTTGAAAGTTTAGAGCCAAATTTATTGATAACTTTGAAAAAGAAAGTTACAATCTCTACAAATTT
66 CTTGAAAGTTTAGAGCCAAATTTATTGATAACTTTG-AAAAGAAAGTTACAATCTCTACAAATTT
* * *
8141784 CTTAAATACAAATATATATATATCCTTAGATTCTTCTCTCCGATTTGACTTGAT-C-TC-A-GA-
130 CTTAAATACAAAGA-A-AAATATCCTTTGATTCTTCTCTCCGATTTGACTTGATCCATCTATGAT
* * *
8141844 C-AAG-C-GT-GGAATGCTTCAAGTGTCATGTTGACTTGTTTTTGAAACAGGTTTGAACCTCATT
193 CTAAGACAGTCGGAATGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTAAACCTCATG
* *
8141905 TCTTCAGTTGAAACGGA-TCAAA-AG-GT-G-G-C-T-TTCTTACTCCATAGCATGTAGTAT-TC
258 TCTTCAGTTGAAACAGATTCAAAGAGTGTAGAGACTTGTTCTT-CTCCATAGCATGAAGT-TGTC
8141961 GATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTATATTTAGATGCATTTC
321 GATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTATATTTAGATGCATTTC
* * * * * *
8142026 TTATTTAACTAGTTCATAACTACAAGTTAATGGAAAATGCCGATTATTTTTATGCAAAAATTAAA
386 TCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCCGATTAATTTTATGCAAAAATTGAA
*
8142091 ATTTGAACTTTCAAT-CGTTAGTGATCTCAAATTGTACAATCCTTCATTGTCAGGCAAGATAAGA
451 ATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCATTGTCAGGCAAGATAAGA
*
8142155 ATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTTTTAAGCCTTGACTTTCT
516 ATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTTTTAAGCCTTGACTTCCT
* *
8142220 AGCAACAAATACTAAGATATGCATACTAACATATGTTTTACTATATTGAAAAAAAAT--A--ATA
581 AGCAACAAATACTAAGGTATGCATACTAACACATGTTTTACTATATTGAAAAAAAATAAATTATA
*
8142281 TGTATTTATAACAATCTCTTTAGTCCTTAGAATGTTAATGTAAGTATATGAATATTTTTTCTATT
646 TGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATGTAAGTATATGAATATTTTTTCTATT
8142346 GCCATACAAAACAACTTC
711 GCCATACAAAACAACTTC
* *
8142364 ATTCAAGTTGACTTGAAAATGTTTATTAAAAACATTGTACAAACAAATTTTGAGTCGAAAGTTCA
1 ATTCAAGTTGACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCA
* *
8142429 CTTGAAAATTTAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTATACAAATTTC
66 CTTGAAAGTTTAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTACAAATTTC
* *
8142494 TTAAATACAAAGAAAAATATCCTTTGATTCTTCTCTCCGATTTAACTTTTATCCAATGGTCGTTT
131 TTAAATACAAAGAAAAATATCCTTTGATTCTTCTCTCCGATTTGAC-TTGATCC-A---TC---T
* * *
8142559 GACTTGATCTTAGACTAGTGCGGAGTGCTTCAAGTGTCATGTTTACTTGCTTTTGAAACAGGTTT
188 -A--TGATCTAAGAC-AGT-CGGAATGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTT
* * * *
8142624 AAACCTCCTGTCTTCATTTGAAACAGATTGAAAGGCAGTTTTCTTCAGAAAAGACTCTTGGGTTC
248 AAACCTCATGTCTTCAGTTGAAACAGATTCAAA-G-AG---T-GT-AG---AGA--CTT--GTTC
* * * * *
8142689 TTCTCCATAGCACGAAGTTGTCGGTTGTTACAAAAATTTGTTCATTCTCAACTTCCATTAATAAC
299 TTCTCCATAGCATGAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAAC
* *
8142754 ATTTT-TATTTAGATGCATTTCTCATTTAATTAGCTCATAACTACAAGTTAGTGAAAAATGTCGA
364 ATTTTATATTTAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCCGA
* *
8142818 TTAATTTTATGCAAAAATTGAAATTTGAACTTTCAATACATTAGTGATTTCAAATTGTGCAATCC
429 TTAATTTTATGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCC
* *
8142883 TTCATTGTCAGGCAAAATAAGAATACAAAGGTTTTGGCAGCCCACAACTCCAATAGAACAAGATA
494 TTCATTGTCAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATA
8142948 CACTTTTAAGCCTTGACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACATGTTTTACTA
559 CACTTTTAAGCCTTGACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACATGTTTTACTA
*
8143013 TATTG---AAAAA-AAATTATATGTATTTTATAACAATCTCTTCAATCCTTAGAATGTTAATGTA
624 TATTGAAAAAAAATAAATTATATGTA-TTTATAACAATCTCTTCAGTCCTTAGAATGTTAATGTA
8143074 AGTATATGAATATTTTTTCTATTGCCATACAAAACAACTTC
688 AGTATATGAATATTTTTTCTATTGCCATACAAAACAACTTC
* * *
8143115 ATTCACGTTGACTTG--AACGTTTATTAATAACATTGTACACACAAATTTTGAGTTGAAAGTTCA
1 ATTCAAGTTGACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCA
* * * **
8143178 CTTGCAAGTTTAAAACCAAATTTATTGATAACTTTGAAAAGAAAACTACAATCTCTACAAATTTC
66 CTTGAAAGTTTAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTACAAATTTC
* *
8143243 TTAAATACAAAGAAAAATATCATTTGATTCTTCTCTCCGATTTGACTTTTATCCAAAGGTCATTT
131 TTAAATACAAAGAAAAATATCCTTTGATTCTTCTCTCCGATTTGAC-TTGATCC--A--TC---T
* * * * *
8143308 GACTAGATCTTAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGATTTTCTTTTGAAACAGGTTT
188 -A-T-GATCTAAGAC-AGT-CGGAATGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTT
* * * * * * *
8143373 GAACGTCCTTTCTTCAGTTGAAACGGA-TCGAAAGGCGGCTTTCTCTAGAAACGACTTTTGGGTT
248 AAACCTCATGTCTTCAGTTGAAACAGATTC-AAA-G-AG-----TGTAG--A-GAC--TT--GTT
* * *
8143437 CTTCTCCAT-GACATGAACTTGTCGATTGCTACAAAAATTAGTTTATTCTCAACTTCCATTAATA
298 CTTCTCCATAG-CATGAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATA
* * * *
8143501 ACATTTTATATTTAGATGCATTT-TGCATTTGATTAATTCATAACTACAAGTTAGAGAAAAATCC
362 ACATTTTATATTTAGATGCATTTCT-CATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGC
* * * * *
8143565 CGATCAATTTTATGAAAAAATTGAAATTTGAACTTTCAATATGTTAGTGGTCTTAAAT
426 CGATTAATTTTATGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAAT
8143623 AGGGATGAGC
Statistics
Matches: 1758, Mismatches: 142, Indels: 145
0.86 0.07 0.07
Matches are distributed among these distances:
707 29 0.02
708 5 0.00
709 41 0.02
710 124 0.07
711 53 0.03
713 1 0.00
714 2 0.00
715 1 0.00
716 167 0.09
717 152 0.09
718 2 0.00
719 2 0.00
722 3 0.00
723 1 0.00
724 2 0.00
725 1 0.00
727 3 0.00
729 64 0.04
730 4 0.00
733 3 0.00
735 2 0.00
736 1 0.00
738 67 0.04
740 3 0.00
742 1 0.00
743 2 0.00
744 2 0.00
745 2 0.00
747 7 0.00
748 9 0.01
749 411 0.23
750 323 0.18
751 99 0.06
753 2 0.00
757 96 0.05
758 37 0.02
759 5 0.00
760 29 0.02
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (728 bp):
ATTCAAGTTGACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCA
CTTGAAAGTTTAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTACAAATTTC
TTAAATACAAAGAAAAATATCCTTTGATTCTTCTCTCCGATTTGACTTGATCCATCTATGATCTA
AGACAGTCGGAATGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTAAACCTCATGTCT
TCAGTTGAAACAGATTCAAAGAGTGTAGAGACTTGTTCTTCTCCATAGCATGAAGTTGTCGATTG
TTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTATATTTAGATGCATTTCTCATT
TAATTAGTTCATAACTACAAGTTAGTGAAAAATGCCGATTAATTTTATGCAAAAATTGAAATTTG
AACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCATTGTCAGGCAAGATAAGAATACA
AAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTTTTAAGCCTTGACTTCCTAGCAA
CAAATACTAAGGTATGCATACTAACACATGTTTTACTATATTGAAAAAAAATAAATTATATGTAT
TTATAACAATCTCTTCAGTCCTTAGAATGTTAATGTAAGTATATGAATATTTTTTCTATTGCCAT
ACAAAACAACTTC
Found at i:8144167 original size:18 final size:16
Alignment explanation
Indices: 8144119--8144167 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 16
8144109 CATTTACTTT
8144119 CCCTCAAACTTTTATTC
1 CCCT-AAACTTTTATTC
*
8144136 CCCAAAACTTTTTATTTCC
1 CCCTAAAC-TTTTA-TT-C
8144155 CCCTAAACTTTTA
1 CCCTAAACTTTTA
8144168 CTTCTCACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 4 0.15
17 8 0.30
18 7 0.26
19 8 0.30
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.41
Consensus pattern (16 bp):
CCCTAAACTTTTATTC
Found at i:8147579 original size:35 final size:34
Alignment explanation
Indices: 8147533--8147698 Score: 174
Period size: 35 Copynumber: 4.8 Consensus size: 34
8147523 TTTCCTCATT
* *
8147533 GAAATACCATACCTACATTTTACAACTCGGTATGG
1 GAAATACCATACCTACGTTTTACAACTCAGTAT-G
* *
8147568 GAAATGCCATACCTACGTTTCT-TAACTCAGTATG
1 GAAATACCATACCTACGTTT-TACAACTCAGTATG
**
8147602 GATAATACCATACCTACGTTCCACAACTCAGTATG
1 GA-AATACCATACCTACGTTTTACAACTCAGTATG
* *
8147637 GTTAATACCATACCTACATTTCT-CAACTCAGTATG
1 G-AAATACCATACCTACGTTT-TACAACTCAGTATG
* *
8147672 GATGATACCATACCTACGTTTCACAAC
1 GA-AATACCATACCTACGTTTTACAAC
8147699 CTTGCCATGG
Statistics
Matches: 108, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
34 3 0.03
35 104 0.96
36 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.30
Consensus pattern (34 bp):
GAAATACCATACCTACGTTTTACAACTCAGTATG
Found at i:8147616 original size:70 final size:70
Alignment explanation
Indices: 8147535--8147698 Score: 238
Period size: 70 Copynumber: 2.3 Consensus size: 70
8147525 TCCTCATTGA
* * * * * *
8147535 AATACCATACCTACATTTTACAACTCGGTATGGGAAATGCCATACCTACGTTTCTTAACTCAGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAAATACCATACCTACATTTCTCAACTCAGTA
8147600 TGGAT
66 TGGAT
* **
8147605 AATACCATACCTACGTTCCACAACTCAGTATGGTTAATACCATACCTACATTTCTCAACTCAGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAAATACCATACCTACATTTCTCAACTCAGTA
8147670 TGGAT
66 TGGAT
*
8147675 GATACCATACCTACGTTTCACAAC
1 AATACCATACCTACGTTTCACAAC
8147699 CTTGCCATGG
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
70 83 1.00
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (70 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGGAAATACCATACCTACATTTCTCAACTCAGTA
TGGAT
Found at i:8149337 original size:35 final size:35
Alignment explanation
Indices: 8149291--8149456 Score: 169
Period size: 35 Copynumber: 4.7 Consensus size: 35
8149281 TTTCCTCATT
* *
8149291 GAAATACCATACCTGCATTT-TACAACTCGGTATGG
1 GAAATACCATACCTACATTTCT-CAACTCAGTATGG
* * *
8149326 GAAATTCCATACCTACGTTTCTTAACTCAGTAT-G
1 GAAATACCATACCTACATTTCTCAACTCAGTATGG
* *
8149360 GATAATACCATACCTACGTTTCACAACTCAGTA-GG
1 GA-AATACCATACCTACATTTCTCAACTCAGTATGG
*
8149395 GTTAATACCATACCTACATTTCTCAACTCAGTAT-G
1 G-AAATACCATACCTACATTTCTCAACTCAGTATGG
* * *
8149430 GATGATACCATACCTACGTTTCACAAC
1 GA-AATACCATACCTACATTTCTCAAC
8149457 CTTGCCATGG
Statistics
Matches: 110, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
34 3 0.03
35 106 0.96
36 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (35 bp):
GAAATACCATACCTACATTTCTCAACTCAGTATGG
Found at i:8149406 original size:70 final size:70
Alignment explanation
Indices: 8149293--8149456 Score: 231
Period size: 70 Copynumber: 2.3 Consensus size: 70
8149283 TCCTCATTGA
* * * * * * *
8149293 AATACCATACCTGCATTTTACAACTCGGTATGGGAAATTCCATACCTACGTTTCTTAACTCAGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAAATACCATACCTACATTTCTCAACTCAGTA
8149358 TGGAT
66 TGGAT
*
8149363 AATACCATACCTACGTTTCACAACTCAGTA-GGGTTAATACCATACCTACATTTCTCAACTCAGT
1 AATACCATACCTACGTTTCACAACTCAGTATGGG-AAATACCATACCTACATTTCTCAACTCAGT
8149427 ATGGAT
65 ATGGAT
*
8149433 GATACCATACCTACGTTTCACAAC
1 AATACCATACCTACGTTTCACAAC
8149457 CTTGCCATGG
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
69 3 0.04
70 81 0.96
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (70 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGGAAATACCATACCTACATTTCTCAACTCAGTA
TGGAT
Found at i:8151827 original size:120 final size:120
Alignment explanation
Indices: 8151614--8151854 Score: 473
Period size: 120 Copynumber: 2.0 Consensus size: 120
8151604 CAGGTTGGAG
8151614 GAACCATCCCAATTTCTCTTGGGGTGGTCAAAGAAATCAAAGAGCACAACCCTCACTAGGCTTTC
1 GAACCATCCCAATTTCTCTTGGGGTGGTCAAAGAAATCAAAGAGCACAACCCTCACTAGGCTTTC
*
8151679 AACAACAACCTTACCAGCAAGAGAAAAAACCAAACCTTGAGGAGATGTTGACGAA
66 AACAACAACCTTACCAGCAAAAGAAAAAACCAAACCTTGAGGAGATGTTGACGAA
8151734 GAACCATCCCAATTTCTCTTGGGGTGGTCAAAGAAATCAAAGAGCACAACCCTCACTAGGCTTTC
1 GAACCATCCCAATTTCTCTTGGGGTGGTCAAAGAAATCAAAGAGCACAACCCTCACTAGGCTTTC
8151799 AACAACAACCTTACCAGCAAAAGAAAAAACCAAACCTTGAGGAGATGTTGACGAA
66 AACAACAACCTTACCAGCAAAAGAAAAAACCAAACCTTGAGGAGATGTTGACGAA
8151854 G
1 G
8151855 GTTATCTCGA
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (120 bp):
GAACCATCCCAATTTCTCTTGGGGTGGTCAAAGAAATCAAAGAGCACAACCCTCACTAGGCTTTC
AACAACAACCTTACCAGCAAAAGAAAAAACCAAACCTTGAGGAGATGTTGACGAA
Found at i:8153641 original size:43 final size:45
Alignment explanation
Indices: 8153548--8153642 Score: 104
Period size: 47 Copynumber: 2.1 Consensus size: 45
8153538 CCACATTGGA
* * **
8153548 GTGTGAGAAGTGAATGAAATCACACACAGACAGCCTCTAACATGGGC
1 GTGTGAGAAGTGAATGAAAT-ACACACA-ACAGCCTCGAACACGACC
* *
8153595 GTGTGAGAAGTGAATGAAAT-CACAC-ACAGCCTGGCACACGACC
1 GTGTGAGAAGTGAATGAAATACACACAACAGCCTCGAACACGACC
8153638 GTGTG
1 GTGTG
8153643 TGCCGCATGA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
43 17 0.40
45 5 0.12
47 20 0.48
ACGTcount: A:0.34, C:0.22, G:0.27, T:0.17
Consensus pattern (45 bp):
GTGTGAGAAGTGAATGAAATACACACAACAGCCTCGAACACGACC
Found at i:8154409 original size:18 final size:18
Alignment explanation
Indices: 8154371--8154420 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
8154361 TACTTCTTTA
* *
8154371 TTATTTTATCATTTTTTAT
1 TTATTTTATTA-TTTTAAT
8154390 TT-TCTTTATTATTTTAAT
1 TTAT-TTTATTATTTTAAT
8154408 TTATTTTATTATT
1 TTATTTTATTATT
8154421 CTACTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (18 bp):
TTATTTTATTATTTTAAT
Found at i:8154414 original size:27 final size:28
Alignment explanation
Indices: 8154364--8154445 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 28
8154354 TTATTTTTAC
8154364 TTCTTTATTATTTT-ATCATT-TTTTATT-
1 TTCTTTATTATTTTAAT--TTATTTTATTA
8154391 TTCTTTATTATTTTAATTTATTTTATTA
1 TTCTTTATTATTTTAATTTATTTTATTA
*
8154419 TTCTACTTATTTCTATTTAATTTATTT
1 TTCT--TTA-TTAT-TTTAATTTATTT
8154446 ACTCCATTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
26 2 0.04
27 21 0.45
28 6 0.13
30 3 0.06
31 3 0.06
32 12 0.26
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (28 bp):
TTCTTTATTATTTTAATTTATTTTATTA
Found at i:8154586 original size:3 final size:3
Alignment explanation
Indices: 8154578--8154622 Score: 56
Period size: 3 Copynumber: 14.7 Consensus size: 3
8154568 AGGTTAGTAT
*
8154578 TTA TTA TTA TTA TTA TTA TTTA TTA CTA TTA TTA TT- TTGA TTA TT
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT-A TTA TT
8154623 TCATTATTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.81
4 5 0.14
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8154600 original size:16 final size:16
Alignment explanation
Indices: 8154581--8154614 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
8154571 TTAGTATTTA
*
8154581 TTATTATTATTATTAT
1 TTATTACTATTATTAT
8154597 TTATTACTATTATTAT
1 TTATTACTATTATTAT
8154613 TT
1 TT
8154615 TGATTATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATTACTATTATTAT
Found at i:8158883 original size:17 final size:16
Alignment explanation
Indices: 8158863--8158903 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
8158853 AATTAAAATA
8158863 AAAATAAAAACAAAAGG
1 AAAATAAAAAC-AAAGG
* *
8158880 AAAAGAAAAACAAAGT
1 AAAATAAAAACAAAGG
8158896 AAAATAAA
1 AAAATAAA
8158904 TGGACTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.78, C:0.05, G:0.10, T:0.07
Consensus pattern (16 bp):
AAAATAAAAACAAAGG
Found at i:8160502 original size:3 final size:3
Alignment explanation
Indices: 8160494--8160531 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8160484 TAAGAGTAAG
8160494 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8160532 ACAATTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8168617 original size:30 final size:30
Alignment explanation
Indices: 8168581--8168816 Score: 375
Period size: 30 Copynumber: 7.8 Consensus size: 30
8168571 ACTTTTCTCA
*
8168581 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
* *
8168611 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
8168641 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
8168671 ACTAGCCACTCTTTTTTCCACCACCAACTCC
1 ACTAGCCACTC-TTTTTCCACCACCAACTCC
8168702 ACTAGCCACTCTTTTTTCCACCACCAACTCC
1 ACTAGCCACTC-TTTTTCCACCACCAACTCC
* *
8168733 ACTAGCCACACATTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
8168763 ACTAGCCACTCTTTTTCCA-CACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
* * *
8168792 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCA
8168817 CTTGTACCTA
Statistics
Matches: 194, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
29 26 0.13
30 108 0.56
31 60 0.31
ACGTcount: A:0.25, C:0.47, G:0.03, T:0.24
Consensus pattern (30 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCC
Found at i:8168711 original size:61 final size:60
Alignment explanation
Indices: 8168581--8168816 Score: 393
Period size: 61 Copynumber: 3.9 Consensus size: 60
8168571 ACTTTTCTCA
* *
8168581 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACATTTTCCACCACCAACTCC
* *
8168641 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACAC-ATTTTCCACCACCAACTCC
8168702 ACTAGCCACTCTTTTTTCCACCACCAACTCCACTAGCCACACATTTTCCACCACCAACTCC
1 ACTAGCCACTC-TTTTTCCACCACCAACTCCACTAGCCACACATTTTCCACCACCAACTCC
* *
8168763 ACTAGCCACTCTTTTTCCA-CACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACATTTTCCACCACCA
8168817 CTTGTACCTA
Statistics
Matches: 167, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
59 33 0.20
60 47 0.28
61 58 0.35
62 29 0.17
ACGTcount: A:0.25, C:0.47, G:0.03, T:0.24
Consensus pattern (60 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACATTTTCCACCACCAACTCC
Found at i:8168817 original size:92 final size:90
Alignment explanation
Indices: 8168581--8168816 Score: 393
Period size: 92 Copynumber: 2.6 Consensus size: 90
8168571 ACTTTTCTCA
*
8168581 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
* *
8168646 CCACTCTTTTTCCACCACCAACTCC
66 CCACACATTTTCCACCACCAACTCC
* *
8168671 ACTAGCCACTCTTTTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCACT
1 ACTAGCCACTC-TTTTTCCACCACCAACTCCACTAGCCACAC-CTTTTCCACCACCAACTCCACT
8168736 AGCCACACATTTTCCACCACCAACTCC
64 AGCCACACATTTTCCACCACCAACTCC
*
8168763 ACTAGCCACTCTTTTTCCA-CACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
8168817 CTTGTACCTA
Statistics
Matches: 136, Mismatches: 8, Indels: 5
0.91 0.05 0.03
Matches are distributed among these distances:
89 12 0.09
90 31 0.23
91 36 0.26
92 57 0.42
ACGTcount: A:0.25, C:0.47, G:0.03, T:0.24
Consensus pattern (90 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
CCACACATTTTCCACCACCAACTCC
Found at i:8169437 original size:25 final size:25
Alignment explanation
Indices: 8169346--8169467 Score: 74
Period size: 25 Copynumber: 5.0 Consensus size: 25
8169336 ATTCTATTTC
* * *
8169346 TTAATATTATATTATATATAT-TCT
1 TTAATACTATATTATGTATATATAT
* *
8169370 TT--TAATATATTAGGTATAT-T-T
1 TTAATACTATATTATGTATATATAT
* * *
8169391 TAAATTCTATATTACGTATATATATAT
1 TTAATACTATATTA--TGTATATATAT
* * *
8169418 TTTATACTATTTTATGTATATATCT
1 TTAATACTATATTATGTATATATAT
* *
8169443 TTAATATTATATTATTTATATATAT
1 TTAATACTATATTATGTATATATAT
8169468 ATATTTTTTT
Statistics
Matches: 73, Mismatches: 19, Indels: 11
0.71 0.18 0.11
Matches are distributed among these distances:
21 2 0.03
22 15 0.21
23 8 0.11
24 2 0.03
25 34 0.47
26 1 0.01
27 11 0.15
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (25 bp):
TTAATACTATATTATGTATATATAT
Found at i:8169517 original size:22 final size:24
Alignment explanation
Indices: 8169489--8169547 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
8169479 ACATGTTATC
8169489 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
8169511 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
8169536 TTATGTACATAT
1 TTATGTATATAT
8169548 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:8169537 original size:25 final size:25
Alignment explanation
Indices: 8169505--8169553 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
8169495 ATATATCTTA
**
8169505 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
8169530 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
8169554 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:8169558 original size:20 final size:20
Alignment explanation
Indices: 8169533--8169588 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
8169523 TTTTAACACT
8169533 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* * *
8169553 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
8169572 TTATATATGTACATATT
1 ATAT-TATGTACATATT
8169589 GATGTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:8173680 original size:73 final size:71
Alignment explanation
Indices: 8173594--8173738 Score: 272
Period size: 73 Copynumber: 2.0 Consensus size: 71
8173584 TTATCACTAA
8173594 TTTCATAATCATTTTCTCATTTCATAGCCTATACTCACATTTGCCTCATTGCCATGACATGACAT
1 TTTCATAATCATTTTCTCATTTCATAGCCTATACTCACATTTGCCTCATTG-CATGACATGA-AT
8173659 TTCTTTGT
64 TTCTTTGT
8173667 TTTCATAATCATTTTCTCATTTCATAGCCTATACTCACATTTGCCTCATTGCATGACATGAATTT
1 TTTCATAATCATTTTCTCATTTCATAGCCTATACTCACATTTGCCTCATTGCATGACATGAATTT
8173732 CTTTGT
66 CTTTGT
8173738 T
1 T
8173739 GATTCCAATA
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
71 11 0.15
72 10 0.14
73 51 0.71
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.45
Consensus pattern (71 bp):
TTTCATAATCATTTTCTCATTTCATAGCCTATACTCACATTTGCCTCATTGCATGACATGAATTT
CTTTGT
Found at i:8178191 original size:69 final size:71
Alignment explanation
Indices: 8178025--8178191 Score: 259
Period size: 71 Copynumber: 2.4 Consensus size: 71
8178015 CTTTTCAAGG
* * *
8178025 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGACACGTTGAGGTATTTTTTAATTTTGT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTTCAATTTTGT
8178090 TTTTCA
66 TTTTCA
* *
8178096 AAATCAACTCATATTGCGAGAAGTGAGTTGAG-CTCAGGCACGCTGAGGTATTTTTCAATTTTG-
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTTCAATTTTGT
8178159 TTTT-A
66 TTTTCA
8178164 AAATTCAACTCATATTGCGAGAGGTGAG
1 AAA-TCAACTCATATTGCGAGAGGTGAG
8178192 CCTCAAGCAC
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
68 4 0.04
69 27 0.30
70 28 0.31
71 30 0.34
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (71 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTTCAATTTTGT
TTTTCA
Found at i:8178357 original size:114 final size:122
Alignment explanation
Indices: 8178077--8178428 Score: 424
Period size: 114 Copynumber: 2.9 Consensus size: 122
8178067 GTTGAGGTAT
8178077 TTTTTAATTTTGTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAG-CTCAGGCACGCTG
1 TTTTTAATTTTG-TTTTCAAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTCAGGCACGCTG
8178141 AGGTATTTTTCAATTTTGTTTTAAAATTCAACTCATATTGCGAGAGGTGAGCCTCAAGCAC
64 AGGTATTTTTCAATTTTGTTTTAAAATTCAACTCATATTGCGAGA-GTGAG-CTCAAGCAC
* *
8178202 TTTTTAATTTTTTTTTCAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCGGGCGAC-C-GA
1 TTTTTAATTTTGTTTTCAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGC-ACGCTGA
* * *
8178265 GGTATTTTT-AGTTTATG-TTTAAAATT-GACTCATATTGCGAGA-TGAG-TTAAGC-C
65 GGTATTTTTCAATTT-TGTTTTAAAATTCAACTCATATTGCGAGAGTGAGCTCAAGCAC
*
8178318 -TTTTAATTTTGTTTTC-AAATCAACTCATATTGCTAGAGTGAGTTGAG-CTCAGGACACGCTGA
1 TTTTTAATTTTGTTTTCAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGG-CACGCTGA
* *
8178380 GGTA-ATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGA
65 GGTATTTTTCAATTT-TGTT-TT----AAAATTCAACTCATATTGCGAGA
8178429 AATGAGTTGA
Statistics
Matches: 200, Mismatches: 13, Indels: 31
0.82 0.05 0.13
Matches are distributed among these distances:
113 7 0.04
114 35 0.17
115 27 0.14
116 2 0.01
117 7 0.04
119 4 0.02
121 20 0.10
122 28 0.14
123 24 0.12
124 33 0.17
125 13 0.06
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (122 bp):
TTTTTAATTTTGTTTTCAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGCACGCTGAG
GTATTTTTCAATTTTGTTTTAAAATTCAACTCATATTGCGAGAGTGAGCTCAAGCAC
Found at i:8178457 original size:75 final size:74
Alignment explanation
Indices: 8178334--8178965 Score: 640
Period size: 75 Copynumber: 8.5 Consensus size: 74
8178324 TTTTGTTTTC
*
8178334 AAATCAACTCATATTGCTAG-AGTGAGTTGAG-CTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
8178397 TTGTTAAAAAA
66 TT-TT-AAAAA
*
8178408 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC-CTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
*
8178472 -TTT--CAA
66 TTTTAAAAA
* * * * *
8178478 AATTCAACT-ATATTGCGAGAAATGAGTTGAG-CTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
*
8178541 TTTTCAAAA
66 TTTTAAAAA
* * *
8178550 AAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTAATTTCAATTT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTT
*
8178614 CTGTTTGT--CAA
63 CTGTTT-TAAAAA
* * *
8178625 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACTGCTGAGGT--TTTCAATTTC
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-ACAC-GCTGAGGTAATTTCAATTTC
8178687 TGTTCTTCAATTTCTGTTCAAAA
64 TGTT-TT--A---------AAAA
*
8178710 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA-TTCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
**
8178774 TTTTTCAAA
66 TTTTAAAAA
* * * *
8178783 AATTCAACT-ATATTGCGAGAA-TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
8178846 TTTTCAAAAA
66 TTTT-AAAAA
* * * *
8178856 AAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACTGCTGAGGTATTTTC-ATTTC
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-ACAC-GCTGAGGTAATTTCAATTTC
*
8178919 -GTTTTTAAAA
64 TGTTTTAAAAA
* *
8178929 AAATCAACTCATATTGCGA-AGGTGAGTTGAGCTTCAG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG
8178966 ATTACACACT
Statistics
Matches: 480, Mismatches: 41, Indels: 75
0.81 0.07 0.13
Matches are distributed among these distances:
68 9 0.02
69 41 0.09
70 13 0.03
71 33 0.07
72 61 0.13
73 72 0.15
74 48 0.10
75 90 0.19
76 49 0.10
77 1 0.00
84 10 0.02
85 45 0.09
86 8 0.02
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (74 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
TTTTAAAAA
Found at i:8178697 original size:14 final size:14
Alignment explanation
Indices: 8178678--8178705 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8178668 TGCTGAGGTT
8178678 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
8178692 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
8178706 AAAAAAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:8178773 original size:85 final size:85
Alignment explanation
Indices: 8178623--8178781 Score: 225
Period size: 85 Copynumber: 1.9 Consensus size: 85
8178613 TCTGTTTGTC
* ** *
8178623 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTTTTCAATTTCT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGCACACTGCTGAGGTTTTCAATTTCT
8178688 GTTCTTCAATTTCTGTTCAA
66 GTTCTTCAATTTCTGTTCAA
8178708 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG-ACAC-GCTGAGGTAATTTCAA-T
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGCACACTGCTGAGGT--TTTCAATT
*
8178770 TCTGTTTTTCAA
63 TCTGTTCTTCAA
8178782 AAATTCAACT
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
84 8 0.12
85 50 0.76
86 8 0.12
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (85 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGCACACTGCTGAGGTTTTCAATTTCT
GTTCTTCAATTTCTGTTCAA
Found at i:8178847 original size:72 final size:74
Alignment explanation
Indices: 8178692--8178965 Score: 343
Period size: 73 Copynumber: 3.8 Consensus size: 74
8178682 ATTTCTGTTC
*
8178692 TTCAATTTCTG--TTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC
1 TTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGC
*
8178755 TGAGGTAAT
66 TGAGGTATT
* *
8178764 TTCAA-TTCTGTTTTTC-AAAAATTCAACT-ATATTGCGAGA-ATGAGTTGAGCCTCAAGACACG
1 TTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACG
*
8178825 TTGAGGTATT
65 CTGAGGTATT
* * *
8178835 TTCAATTTCTGTTTTCAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCAC
1 TTCAATTTCTGTTTTC-AAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG-ACAC
8178899 TGCTGAGGTATT
64 -GCTGAGGTATT
* * *
8178911 TTC-ATTTC-GTTTTTAAAAAAATCAACTCATATTGCGA-AGGTGAGTTGAGCTTCAG
1 TTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAG
8178966 ATTACACACT
Statistics
Matches: 179, Mismatches: 12, Indels: 21
0.84 0.06 0.10
Matches are distributed among these distances:
71 44 0.25
72 36 0.20
73 45 0.25
74 20 0.11
75 21 0.12
76 13 0.07
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (74 bp):
TTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGC
TGAGGTATT
Found at i:8179061 original size:130 final size:130
Alignment explanation
Indices: 8178859--8179098 Score: 342
Period size: 130 Copynumber: 1.8 Consensus size: 130
8178849 TCAAAAAAAA
* * *
8178859 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACTGCTGAGGTATTTTCATTTCGTTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTACACTGCTGAGGTAATTTCATTTCGTTTT
** *
8178924 TAAAAAAATCAACTCATATTGCGA-AGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTTTT
66 T-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGATTACACACTGTGGTATTTTTT
8178988 T
130 T
*
8178989 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGG-ACAC-GCTGAGGTAATTTCAATTTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTACACTGCTGAGGTAATTTC-ATTTC-GT
8179052 TTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
63 TT-TT-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
8179099 GACACGCTGA
Statistics
Matches: 98, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
129 13 0.13
130 39 0.40
131 6 0.06
132 25 0.26
133 15 0.15
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (130 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTACACTGCTGAGGTAATTTCATTTCGTTTT
TAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGATTACACACTGTGGTATTTTTTT
Found at i:8179112 original size:75 final size:74
Alignment explanation
Indices: 8178989--8179322 Score: 369
Period size: 75 Copynumber: 4.5 Consensus size: 74
8178979 GTATTTTTTT
* *
8178989 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTT
8179054 GTTAAAAAAA
66 -TTAAAAAAA
*
8179064 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATTTCTG-TT
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTT
* *
8179127 TT--CAAAT
66 TTAAAAAAA
* * * *
8179134 TCAACTTATATTGCGAGAAATGAGTTGAGCCTCA-GACACG-TGAGGTATTTTCAATTTCTATTT
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTT
8179197 TTCAAAAAAAAA
66 TT---AAAAAAA
* * * *
8179209 TCAACTTATATTGCGAG-AGTGAGTTGAGCCTC-GGTTCACATGCTAAGGTATTTTCAATTTCTG
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTCTG
*
8179272 TTTTTTTTTTAAAAAA
63 ----TTTTTAAAAAAA
* *
8179288 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG
8179323 ATTACACACT
Statistics
Matches: 223, Mismatches: 18, Indels: 30
0.82 0.07 0.11
Matches are distributed among these distances:
68 6 0.03
69 17 0.08
70 40 0.18
72 2 0.01
73 2 0.01
74 28 0.13
75 65 0.29
77 4 0.02
78 18 0.08
79 22 0.10
80 13 0.06
81 1 0.00
82 5 0.02
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (74 bp):
TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTT
TTAAAAAAA
Found at i:8179304 original size:79 final size:74
Alignment explanation
Indices: 8179134--8179323 Score: 218
Period size: 79 Copynumber: 2.5 Consensus size: 74
8179124 GTTTTCAAAT
* *
8179134 TCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGACACGTGAGGTATTTTCAATTTCTATTTTT
1 TCAACTTATATTGCGAG-AGTGAGTTGAGCCTCAGACACGTAAGGTATTTTCAATTTCTATTTTT
8179199 CAAAAAAAAA
65 CAAAAAAAAA
* * *
8179209 TCAACTTATATTGCGAGAGTGAGTTGAGCCTCGGTTCACATGCTAAGGTATTTTCAATTTCTGTT
1 TCAACTTATATTGCGAGAGTGAGTTGAGCCTCAG---ACACG-TAAGGTATTTTCAATTTCT-AT
****
8179274 TTTTTTTTAAAAAA
61 TTTTCAAAAAAAAA
* *
8179288 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
1 TCAACTTATATTGCGAGA-GTGAGTTGAGCCTCAGA
8179324 TTACACACTG
Statistics
Matches: 97, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
74 15 0.15
75 17 0.18
77 5 0.05
78 18 0.19
79 28 0.29
80 14 0.14
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36
Consensus pattern (74 bp):
TCAACTTATATTGCGAGAGTGAGTTGAGCCTCAGACACGTAAGGTATTTTCAATTTCTATTTTTC
AAAAAAAAA
Found at i:8179393 original size:356 final size:349
Alignment explanation
Indices: 8178701--8179434 Score: 1189
Period size: 356 Copynumber: 2.1 Consensus size: 349
8178691 CTTCAATTTC
8178701 TGTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TGTT-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
8178766 CAATTCTGTTTTTCAAAAATTCAACTATATTGCGAGAATGAGTTGAGCCTCAAGACACGTTGAGG
65 CAATTCTGTTTTTC-AAAATTCAACTATATTGCGAGAATGAGTTGAGCCTCAAGACACGTTGAGG
8178831 TATTTTCAATTTCTGTTTTCAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTT
129 TATTTTCAATTTCTGTTTTCAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTT
*
8178896 CACTGCTGAGGTATTTTCATTTCGTTTTTAAAAAAATCAACTCATATTGCGAAGGTGAGTTGAGC
194 CACTGCTAAGGTATTTTCATTTCGTTTTTAAAAAAATCAACTCATATTGCGAAGGTGAGTTGAGC
*
8178961 TTCAGATTACACACTGTGGTATTTTTTTTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGA
259 TTCAGATTACACACTGTGGTATTTTTTTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
8179026 CACGCTGAGGTAATTTCAATTTCTGTT
324 CACGATGAGGTAATTTCAA-TTCTGTT
8179053 TGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTC
1 TGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
8179117 AATTTCTG-TTTTC-AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTC-AGACACG-TGAG
66 AA-TTCTGTTTTTCAAAATTCAAC-TATATTGCGAG-AATGAGTTGAGCCTCAAGACACGTTGAG
*
8179178 GTATTTTCAATTTCTATTTTTCAAAAAAAAATCAACTTATATTGCGAGA-GTGAGTTGAGCCTCG
128 GTATTTTCAATTTCT-GTTTTC-AAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCG
*
8179242 GTTCACATGCTAAGGTATTTTCAATTTCTGTTTTTTTTTTAAAAAATCAACTCATATTGCGAGAG
191 GTTCAC-TGCTAAGGTATTTTC-ATTTC-G----TTTTTAAAAAAATCAACTCATATTGCGA-AG
*
8179307 GTGAGTTGAGCTTCAGATTACACACTGTGGTA-TTTTTTTCAATTCATATTGCGAGAGGTGAGTT
248 GTGAGTTGAGCTTCAGATTACACACTGTGGTATTTTTTTTCAACTCATATTGCGAGAGGTGAGTT
8179371 GAGCCTCAGGACACGATGAGGTAATTTCAATTCTGTT
313 GAGCCTCAGGACACGATGAGGTAATTTCAATTCTGTT
* *
8179408 TG-T-CAAGAATCAACTCATATTGCGAGA
1 TGTTAAAAAAATCAACTCATATTGCGAGA
8179435 GGTGGGTTGA
Statistics
Matches: 361, Mismatches: 8, Indels: 25
0.92 0.02 0.06
Matches are distributed among these distances:
348 28 0.08
349 44 0.12
350 67 0.19
351 65 0.18
352 5 0.01
353 22 0.06
354 1 0.00
355 9 0.02
356 86 0.24
357 34 0.09
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (349 bp):
TGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTCTGTTTTTCAAAATTCAACTATATTGCGAGAATGAGTTGAGCCTCAAGACACGTTGAGGTA
TTTTCAATTTCTGTTTTCAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCA
CTGCTAAGGTATTTTCATTTCGTTTTTAAAAAAATCAACTCATATTGCGAAGGTGAGTTGAGCTT
CAGATTACACACTGTGGTATTTTTTTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGATGAGGTAATTTCAATTCTGTT
Done.