Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 270 of 362
Found at i:91293941 original size:48 final size:48
Alignment explanation
Indices: 91293869--91293992 Score: 160
Period size: 48 Copynumber: 2.6 Consensus size: 48
91293859 TCATTAGGGA
* * *
91293869 ATTCATTGATTTGGGTTCGGGCCATGATATCGGCACTTT-GGGTGCGAG
1 ATTCATTGATTTGGCTTCGGGCCATGATATCAGCA-TTTCGAGTGCGAG
* * *
91293917 CTTCATTGATTTGGCTTCAGGCCATGATATTAGCATTTCGAGTGCGAG
1 ATTCATTGATTTGGCTTCGGGCCATGATATCAGCATTTCGAGTGCGAG
* *
91293965 ATACATTGAGTTGGCTTCGGGCCATGAT
1 ATTCATTGATTTGGCTTCGGGCCATGAT
91293993 TTGAGCACTT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
47 3 0.05
48 62 0.95
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.34
Consensus pattern (48 bp):
ATTCATTGATTTGGCTTCGGGCCATGATATCAGCATTTCGAGTGCGAG
Found at i:91304252 original size:13 final size:13
Alignment explanation
Indices: 91304234--91304258 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91304224 CCGAAACTAG
91304234 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
91304247 AAAGAAAAAAAA
1 AAAGAAAAAAAA
91304259 AATGCTCATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:91305437 original size:39 final size:40
Alignment explanation
Indices: 91305336--91305558 Score: 273
Period size: 39 Copynumber: 5.6 Consensus size: 40
91305326 TTGAATGATG
*
91305336 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
91305375 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
91305416 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
91305455 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
91305494 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
91305533 AACCGGGCTATGTCCCGAAGGCATTT
1 -TCCGGGCTAAGTCCCGAAGGCATTT
91305559 TAACGAGGAG
Statistics
Matches: 164, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
39 75 0.46
40 75 0.46
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:91305523 original size:79 final size:81
Alignment explanation
Indices: 91305336--91305558 Score: 289
Period size: 79 Copynumber: 2.8 Consensus size: 81
91305326 TTGAATGATG
* * *
91305336 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
91305399 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
91305416 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
91305477 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
91305494 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
91305558 T
66 T
91305559 TAACGAGGAG
Statistics
Matches: 127, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
78 37 0.29
79 54 0.43
80 36 0.28
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:91305581 original size:79 final size:79
Alignment explanation
Indices: 91305336--91305592 Score: 228
Period size: 79 Copynumber: 3.3 Consensus size: 79
91305326 TTGAATGATG
* * * *
91305336 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
* *
91305398 TTTGTGCGAGAT-ACTAAT
62 TTTGTACGAG-TGACTAAA
* *
91305416 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
* *
91305480 TGCGAGTTACTAAA
66 TACGAGTGACTAAA
*
91305494 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
91305557 TT-TAACGAG-GAGCTATA
63 TTGT-ACGAGTGA-CTAAA
* *
91305574 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
91305593 TATGTGATTT
Statistics
Matches: 154, Mismatches: 13, Indels: 21
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 37 0.24
79 68 0.44
80 47 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
TACGAGTGACTAAA
Found at i:91313418 original size:39 final size:40
Alignment explanation
Indices: 91313317--91313540 Score: 275
Period size: 40 Copynumber: 5.7 Consensus size: 40
91313307 TTGAATGATG
*
91313317 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
91313356 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
91313397 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
91313436 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
91313475 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
91313514 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
91313541 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
39 75 0.45
40 76 0.46
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:91313504 original size:79 final size:81
Alignment explanation
Indices: 91313317--91313540 Score: 291
Period size: 79 Copynumber: 2.8 Consensus size: 81
91313307 TTGAATGATG
* * *
91313317 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
91313380 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
91313397 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
91313458 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
91313475 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
91313539 TG
66 TG
91313541 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
78 37 0.29
79 54 0.42
80 37 0.29
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:91313562 original size:79 final size:79
Alignment explanation
Indices: 91313317--91313573 Score: 226
Period size: 79 Copynumber: 3.3 Consensus size: 79
91313307 TTGAATGATG
* * * *
91313317 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
91313379 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
91313397 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
91313461 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
91313475 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
91313538 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
91313555 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
91313574 TACGTGATTT
Statistics
Matches: 154, Mismatches: 14, Indels: 19
0.82 0.07 0.10
Matches are distributed among these distances:
77 1 0.01
78 37 0.24
79 67 0.44
80 48 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:91315063 original size:30 final size:30
Alignment explanation
Indices: 91315029--91315088 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
91315019 CTTAAATCGT
91315029 ACTTTTACAA-ATTTAC-ATTTTGACCCCTAA
1 ACTTTTA-AATATTTACGATTTTG-CCCCTAA
91315059 ACTTTTAAATATTTACGATTTTGCCCCTAA
1 ACTTTTAAATATTTACGATTTTGCCCCTAA
91315089 GCTCATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 2 0.07
30 20 0.71
31 6 0.21
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.42
Consensus pattern (30 bp):
ACTTTTAAATATTTACGATTTTGCCCCTAA
Found at i:91316654 original size:31 final size:31
Alignment explanation
Indices: 91316616--91316679 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
91316606 GAGTGTTAGG
*
91316616 ATATTATTATTATGAGA-TATCTTTTAAGAAT
1 ATATTATTATGA-GAGATTATCTTTTAAGAAT
*
91316647 ATATTATTATGAGAGATTATCTTTTAGGAAT
1 ATATTATTATGAGAGATTATCTTTTAAGAAT
91316678 AT
1 AT
91316680 CTAAATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (31 bp):
ATATTATTATGAGAGATTATCTTTTAAGAAT
Found at i:91316743 original size:31 final size:31
Alignment explanation
Indices: 91316705--91316771 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
91316695 ATCTTTTAAG
* * *
91316705 CATATATTTAGGAATATATTATGTATCTTTC
1 CATATATTTAGGAATATATCATATATATTTC
91316736 CATATATTTAGGAATATATCATATATATTTC
1 CATATATTTAGGAATATATCATATATATTTC
91316767 C-TATA
1 CATATA
91316772 AATATTATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 4 0.12
31 29 0.88
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.46
Consensus pattern (31 bp):
CATATATTTAGGAATATATCATATATATTTC
Found at i:91319147 original size:22 final size:22
Alignment explanation
Indices: 91319122--91319169 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
91319112 CAAAAATCAA
91319122 TCAATCATGCATACTTACCATG
1 TCAATCATGCATACTTACCATG
*
91319144 TCAATCATGCATACTTACCATT
1 TCAATCATGCATACTTACCATG
91319166 TCAA
1 TCAA
91319170 CCCACCCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.33
Consensus pattern (22 bp):
TCAATCATGCATACTTACCATG
Found at i:91334015 original size:28 final size:28
Alignment explanation
Indices: 91333941--91334015 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
91333931 TATATATATG
* * *
91333941 TGGCACTTAGTATGCGAAATATTGAGAA
1 TGGCACTTAGTGTGCGAGATATTAAGAA
* *
91333969 TGGCACTTGGTGTGTGAGATATTAAGTAA
1 TGGCACTTAGTGTGCGAGATATTAAG-AA
91333998 -GGCACTTAGTGTGCGAGA
1 TGGCACTTAGTGTGCGAGA
91334016 CAGCGAAGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGATATTAAGAA
Found at i:91336794 original size:48 final size:48
Alignment explanation
Indices: 91336722--91336819 Score: 128
Period size: 48 Copynumber: 2.0 Consensus size: 48
91336712 TGTGGGACAT
*
91336722 GGCATCGATATGAGATCCGATGTAAGACCATGTCA-GGGATATGGCATC
1 GGCATCGATATGAGATACGATGTAAGACCAT-TCATGGGATATGGCATC
* * *
91336770 GGCATCGATATGAGATTACG-TGTAAGACTATTTATGGGATATGGCTTC
1 GGCATCGATATGAGA-TACGATGTAAGACCATTCATGGGATATGGCATC
91336818 GG
1 GG
91336820 TATGAGATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
47 2 0.05
48 39 0.89
49 3 0.07
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (48 bp):
GGCATCGATATGAGATACGATGTAAGACCATTCATGGGATATGGCATC
Found at i:91346418 original size:48 final size:45
Alignment explanation
Indices: 91346320--91346428 Score: 132
Period size: 48 Copynumber: 2.3 Consensus size: 45
91346310 GGGTTATTGT
*
91346320 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGG-C-CATTACGA
*
91346366 GAGCTTGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCATT---ACGA
91346414 GAGCTAGTGTAAGAC
1 GAGCTAGTGTAAGAC
91346429 ATGCATCGTC
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
45 4 0.07
46 13 0.24
47 14 0.25
48 24 0.44
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCATTACGA
Found at i:91350404 original size:51 final size:51
Alignment explanation
Indices: 91350309--91350414 Score: 153
Period size: 51 Copynumber: 2.1 Consensus size: 51
91350299 TTTGTGAGAT
* * *
91350309 ATGTAGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATGGTGGATGTGATT-C
1 ATGTAACATCCGAGCTCGTTGAGAGGTCCAAGTTCATAGTGGATGTG-TTAC
91350360 ATGTAACATCCGAGCTCGTTGAGAGGTCCAAGTTCATTAG-GGATGTGTTAC
1 ATGTAACATCCGAGCTCGTTGAGAGGTCCAAGTTCA-TAGTGGATGTGTTAC
91350411 ATGT
1 ATGT
91350415 TATGTGGTAG
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
50 2 0.04
51 46 0.92
52 2 0.04
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (51 bp):
ATGTAACATCCGAGCTCGTTGAGAGGTCCAAGTTCATAGTGGATGTGTTAC
Found at i:91359322 original size:19 final size:20
Alignment explanation
Indices: 91359285--91359322 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
91359275 CTTCATTTAT
*
91359285 CTCCCCTCTCTCTCTCCCTC
1 CTCCCCTCTCTCTCACCCTC
91359305 CTCCCCTCT-TCTCACCCT
1 CTCCCCTCTCTCTCACCCT
91359323 TGCACACCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.03, C:0.63, G:0.00, T:0.34
Consensus pattern (20 bp):
CTCCCCTCTCTCTCACCCTC
Found at i:91361060 original size:23 final size:24
Alignment explanation
Indices: 91361008--91361061 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
91360998 TTTTTTCTTT
* *
91361008 ATTTATCCACTTTAAGTACTTTTT
1 ATTTTTCCACTTTAAGTACTTTTC
91361032 ATTTTTTCC-CTTTAA-TACTATTTC
1 A-TTTTTCCACTTTAAGTACT-TTTC
91361056 ATTTTT
1 ATTTTT
91361062 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 9 0.35
24 11 0.42
25 6 0.23
ACGTcount: A:0.22, C:0.17, G:0.02, T:0.59
Consensus pattern (24 bp):
ATTTTTCCACTTTAAGTACTTTTC
Found at i:91373170 original size:40 final size:40
Alignment explanation
Indices: 91373122--91373389 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
91373112 GCAAACACAT
* * *
91373122 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
91373162 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
91373202 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
91373242 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
91373282 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
91373322 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
91373362 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
91373390 TCCAATGCTC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:91382007 original size:40 final size:40
Alignment explanation
Indices: 91381959--91382226 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
91381949 GCAAACACAT
* * *
91381959 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
91381999 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
91382039 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
91382079 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
91382119 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
91382159 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
91382199 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
91382227 TCCAATGCTC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:91386468 original size:26 final size:26
Alignment explanation
Indices: 91386427--91386503 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
91386417 AGCCCCATGG
* *
91386427 GCGTGCTGTCTGGCCGTGTGTCCCTG
1 GCGTACTGTCTGGCCGTGTGTCCCTA
* *
91386453 GTGTACTGTCTGGCCGTGTGTCCCCA
1 GCGTACTGTCTGGCCGTGTGTCCCTA
*
91386479 GCGTGCTGTCTGGCCGTGTGTCCCT
1 GCGTACTGTCTGGCCGTGTGTCCCT
91386504 TGCACGTAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.03, C:0.31, G:0.35, T:0.31
Consensus pattern (26 bp):
GCGTACTGTCTGGCCGTGTGTCCCTA
Found at i:91392818 original size:11 final size:11
Alignment explanation
Indices: 91392804--91392830 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
91392794 GTAAACATCA
91392804 AAAATAATTTT
1 AAAATAATTTT
91392815 AAAATAATTTT
1 AAAATAATTTT
91392826 AAAAT
1 AAAAT
91392831 CTCAAATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AAAATAATTTT
Found at i:91394128 original size:10 final size:11
Alignment explanation
Indices: 91394105--91394129 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91394095 ACCAATAGTC
91394105 AAAATGAGCAA
1 AAAATGAGCAA
91394116 AAAATGAGCAA
1 AAAATGAGCAA
91394127 AAA
1 AAA
91394130 GGGGACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.08, G:0.16, T:0.08
Consensus pattern (11 bp):
AAAATGAGCAA
Found at i:91395178 original size:367 final size:367
Alignment explanation
Indices: 91394505--91395237 Score: 1360
Period size: 367 Copynumber: 2.0 Consensus size: 367
91394495 AGCAAGACGA
91394505 TCCATCCCAAAAGCCGGAACTACTCCAAGATCTAAGATCTCTCTCAGAATTCCTTCAGGGGTTTT
1 TCCATCCCAAAAGCCGGAACTACTCCAAGATCTAAGATCTCTCTCAGAATTCCTTCAGGGGTTTT
91394570 AGAGTTTTCTTCATGTTTTGTTATTTTTATACTTTTGAGATGTACTCTTATTTTATTATGAACTA
66 AGAGTTTTCTTCATGTTTTGTTATTTTTATACTTTTGAGATGTACTCTTATTTTATTATGAACTA
** *
91394635 AACCCCTTAGATACTTAAGGGGGATAAAACCTATGATGGATCTTGTTATTATTATCTGAACTGTA
131 AACCCCTTAGATACCAAACGGGGATAAAACCTATGATGGATCTTGTTATTATTATCTGAACTGTA
*
91394700 TGATAAATACTTGATTTGTTTTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCAGGTATTA
196 TGATAAATACTTGATTTGTTTTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCAAGTATTA
*
91394765 ATTCATGATTTGATGTGCTTATGTAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTGGGCATAA
261 ATTCATGATTTGATGTGCTTATGTAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTGGGAATAA
*
91394830 TTAGGCGGAGTTGATCGAACGCCTAGAAATAGGGTTACGAGT
326 TTAAGCGGAGTTGATCGAACGCCTAGAAATAGGGTTACGAGT
*
91394872 TCCATCCCAAAAGCCGGAACTATTCCAAGA-CTGAAGATCTCTCTCAGAATTCCTTCAGGGGTTT
1 TCCATCCCAAAAGCCGGAACTACTCCAAGATCT-AAGATCTCTCTCAGAATTCCTTCAGGGGTTT
91394936 TAGAGTTTTCTTCATGTTTTGTTATTTTTATACTTTTGAGATGTACTCTTATTTTATTATGAACT
65 TAGAGTTTTCTTCATGTTTTGTTATTTTTATACTTTTGAGATGTACTCTTATTTTATTATGAACT
*
91395001 AAACCCCTTAGATACCAAACGGGGATAAAACCTATGTTGGATCTTGTTATTATTATCTGAACTGT
130 AAACCCCTTAGATACCAAACGGGGATAAAACCTATGATGGATCTTGTTATTATTATCTGAACTGT
*
91395066 ATGATAAATATTTGATTTGTTTTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCAAGTATT
195 ATGATAAATACTTGATTTGTTTTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCAAGTATT
*
91395131 AATTCATGATTTGATGTGCTTATGTAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTTGGAATA
260 AATTCATGATTTGATGTGCTTATGTAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTGGGAATA
91395196 ATTAAGCGGAGTTGATCGAACGCCTAGAAATAGGGTTACGAG
325 ATTAAGCGGAGTTGATCGAACGCCTAGAAATAGGGTTACGAG
91395238 ATTTTCTCGG
Statistics
Matches: 355, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
366 2 0.01
367 353 0.99
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (367 bp):
TCCATCCCAAAAGCCGGAACTACTCCAAGATCTAAGATCTCTCTCAGAATTCCTTCAGGGGTTTT
AGAGTTTTCTTCATGTTTTGTTATTTTTATACTTTTGAGATGTACTCTTATTTTATTATGAACTA
AACCCCTTAGATACCAAACGGGGATAAAACCTATGATGGATCTTGTTATTATTATCTGAACTGTA
TGATAAATACTTGATTTGTTTTTAATTATGTGTTCTTAATGCTTGAGTTAATATTCCAAGTATTA
ATTCATGATTTGATGTGCTTATGTAGAGGAGGAATAGACCCTGCCTAAGAGTAGATTGGGAATAA
TTAAGCGGAGTTGATCGAACGCCTAGAAATAGGGTTACGAGT
Found at i:91395554 original size:13 final size:13
Alignment explanation
Indices: 91395538--91395583 Score: 76
Period size: 13 Copynumber: 3.6 Consensus size: 13
91395528 TTTAATTAAA
*
91395538 TTAGTTAATTAGT
1 TTAGATAATTAGT
91395551 TTAGATAATTAGT
1 TTAGATAATTAGT
91395564 TTAGATAATTAGT
1 TTAGATAATTAGT
91395577 TTA-ATAA
1 TTAGATAA
91395584 ACAAACCCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 4 0.12
13 28 0.88
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:91400982 original size:28 final size:29
Alignment explanation
Indices: 91400940--91400999 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
91400930 CCTCCTATCT
91400940 TTTTATTCTTATTTTT-TTACTTATTTT-A
1 TTTTATTCTTATTTTTATTAC-TATTTTCA
* *
91400968 TTTTATTTTTCTTTTTATTACTATTTTCA
1 TTTTATTCTTATTTTTATTACTATTTTCA
91400997 TTT
1 TTT
91401000 CAATTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 20 0.71
29 8 0.29
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (29 bp):
TTTTATTCTTATTTTTATTACTATTTTCA
Found at i:91401006 original size:29 final size:28
Alignment explanation
Indices: 91400951--91401015 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 28
91400941 TTTATTCTTA
* *
91400951 TTTTTTTACTTATTTTATTTTATTTTTC
1 TTTTTTTACTTATTTTATTTCAATTTTC
*
91400979 TTTTTATTAC-TATTTTCATTTCAATTTTA
1 TTTTT-TTACTTATTTT-ATTTCAATTTTC
*
91401008 TTATTTTA
1 TTTTTTTA
91401016 TTTTGAAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
28 14 0.45
29 17 0.55
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (28 bp):
TTTTTTTACTTATTTTATTTCAATTTTC
Found at i:91403905 original size:13 final size:13
Alignment explanation
Indices: 91403889--91403921 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
91403879 TTTAATTAAA
*
91403889 TTAGTTAATTAGT
1 TTAGATAATTAGT
91403902 TTAGATAATTAGT
1 TTAGATAATTAGT
91403915 TTA-ATAA
1 TTAGATAA
91403922 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:91406965 original size:14 final size:14
Alignment explanation
Indices: 91406942--91406975 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
91406932 ACACACGCCC
*
91406942 GTGCCTCTACCTAT
1 GTGCCACTACCTAT
*
91406956 GTGCCACTACCTGT
1 GTGCCACTACCTAT
91406970 GTGCCA
1 GTGCCA
91406976 AATTTTAAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.35, G:0.21, T:0.29
Consensus pattern (14 bp):
GTGCCACTACCTAT
Found at i:91414249 original size:48 final size:48
Alignment explanation
Indices: 91414182--91414408 Score: 165
Period size: 48 Copynumber: 4.7 Consensus size: 48
91414172 GTGAATTGCC
* * * *
91414182 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCT
* * * * * *
91414230 GATGCCCTGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCT
* * * *
91414278 GATGCCATGTCCCAGACATGGTCATACACCGGCTCTCA--T-AATGTGCCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA-G-G-CT
* * * * * * * *
91414326 AATGCCATGTCCTAGTCATGGTCTTACACTAG-TGCATATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-CACATCTCAAGGCT
* * *
91414374 GATGCCATGTCCCAAACATGGTCATACACTAGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
91414409 TCACAACATC
Statistics
Matches: 139, Mismatches: 32, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
45 2 0.01
46 1 0.01
47 2 0.01
48 129 0.93
49 2 0.01
50 1 0.01
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCT
Found at i:91414346 original size:96 final size:95
Alignment explanation
Indices: 91414231--91414451 Score: 250
Period size: 96 Copynumber: 2.3 Consensus size: 95
91414221 GTCGAGGCTG
* * * ** *
91414231 ATGCCCTGTCCCAGACATGGTCTTACACTAGCT-C-TCGTCTCAATGTTGATGCCATGTCCCAGA
1 ATGCCATGT-CCAGACATGGTCTTACACTAG-TGCAT-ATATCAATGCCGATGCCATGTCCCAAA
* * **
91414294 CATGGTCATACACCGGCTCTCATAATGTGC-CCA
63 CATGGTCATACACCAGCTCTCACAACAT-CACCA
*
91414327 ATGCCATGTCCTAGTCATGGTCTTACACTAGTGCATATATCAATGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCC-AGACATGGTCTTACACTAGTGCATATATCAATGCCGATGCCATGTCCCAAACA
*
91414392 TGGTCATACACTAGCTCTCACAACATCACCA
65 TGGTCATACACCAGCTCTCACAACATCACCA
*
91414423 ATGCCATGTTCCAAACATGGTCTTACACT
1 ATGCCATG-TCCAGACATGGTCTTACACT
91414452 GACTCCCATA
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
95 4 0.04
96 98 0.92
97 4 0.04
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (95 bp):
ATGCCATGTCCAGACATGGTCTTACACTAGTGCATATATCAATGCCGATGCCATGTCCCAAACAT
GGTCATACACCAGCTCTCACAACATCACCA
Found at i:91414427 original size:48 final size:47
Alignment explanation
Indices: 91414279--91414451 Score: 152
Period size: 48 Copynumber: 3.6 Consensus size: 47
91414269 CTCAATGTTG
* ** **
91414279 ATGCCATGTCCCAGACATGGTCATACACCGGCTCTCATAATGTGCCCA
1 ATGCCATGTCCCAAACATGGTCATACACTAGCTCTCATAACAT-CCCA
* ** * * * *
91414327 ATGCCATGTCCTAGTCATGGTCTTACACTAG-TGCAT-ATATCAATGCCG
1 ATGCCATGTCCCAAACATGGTCATACACTAGCT-C-TCATAAC-ATCCCA
*
91414375 ATGCCATGTCCCAAACATGGTCATACACTAGCTCTCACAACATCACCA
1 ATGCCATGTCCCAAACATGGTCATACACTAGCTCTCATAACATC-CCA
* *
91414423 ATGCCATGTTCCAAACATGGTCTTACACT
1 ATGCCATGTCCCAAACATGGTCATACACT
91414452 GACTCCCATA
Statistics
Matches: 99, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
47 4 0.04
48 92 0.93
49 3 0.03
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (47 bp):
ATGCCATGTCCCAAACATGGTCATACACTAGCTCTCATAACATCCCA
Found at i:91414477 original size:96 final size:95
Alignment explanation
Indices: 91414281--91414492 Score: 225
Period size: 96 Copynumber: 2.2 Consensus size: 95
91414271 CAATGTTGAT
* * * ** **
91414281 GCCATGTCCCAGACATGGTCATACACCGGCTCTCATAATGTGCCCAATGCCATGTCCTAGTCATG
1 GCCATGTCCCAAACATGGTCATACACCAGCTCTCACAACATGCCCAATGCCATGTCCTAAACATG
* * *
91414346 GTCTTACACTAGTGCATATATCAATGCCGAT
66 GTCTTACACTACTCCATATAT-AATGCCGAC
*
91414377 GCCATGTCCCAAACATGGTCATACACTAGCTCTCACAACAT-CACCAATGCCATGTTCC-AAACA
1 GCCATGTCCCAAACATGGTCATACACCAGCTCTCACAACATGC-CCAATGCCATG-TCCTAAACA
*
91414440 TGGTCTTACACTGACTCCCATAT-T-GTGCCTGAC
64 TGGTCTTACACT-ACT-CCATATATAATGCC-GAC
*
91414473 GCCATGTTCCAAACATGGTC
1 GCCATGTCCCAAACATGGTC
91414493 TTATGTTGGC
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
95 5 0.05
96 82 0.84
97 6 0.06
98 5 0.05
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (95 bp):
GCCATGTCCCAAACATGGTCATACACCAGCTCTCACAACATGCCCAATGCCATGTCCTAAACATG
GTCTTACACTACTCCATATATAATGCCGAC
Found at i:91414490 original size:144 final size:144
Alignment explanation
Indices: 91414185--91414495 Score: 315
Period size: 144 Copynumber: 2.2 Consensus size: 144
91414175 AATTGCCGAT
* * * * * *
91414185 GCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCCTGTCCCAGACATG
1 GCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAAACATG
* * * **** * * *
91414250 GTCTTACACTAGCTCTCGTCTCAATGTTGATGCCATGTCCCAGACATGGTCATACACCGGCTCTC
66 GTCATACACTAGCTCTCGACACAATACCAATGCCATGTCCCAAACATGGTCATACACCGACTCCC
*
91414315 ATAATGTGCCCAAT
131 ATAATGTGCCCAAC
** * *
91414329 GCCATG-TCCTAGTCATGGTCTTACACTAG-TGCATATATCAATGCCGATGCCATGTCCCAAACA
1 GCCATGTTCC-AAACATGGTCTTACACTAGCT-CACATATCAAGGCCGATGCCATGTCCCAAACA
* * *
91414392 TGGTCATACACTAGCTCTC-ACA-ACATCACCAATGCCATGTTCCAAACATGGTCTTACACTGAC
64 TGGTCATACACTAGCTCTCGACACA-AT-ACCAATGCCATGTCCCAAACATGGTCATACACCGAC
* **
91414455 TCCCATATTGTGCCTGAC
127 TCCCATAATGTGCCCAAC
91414473 GCCATGTTCCAAACATGGTCTTA
1 GCCATGTTCCAAACATGGTCTTA
91414496 TGTTGGCACA
Statistics
Matches: 133, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
142 1 0.01
143 7 0.05
144 122 0.92
145 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (144 bp):
GCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAAACATG
GTCATACACTAGCTCTCGACACAATACCAATGCCATGTCCCAAACATGGTCATACACCGACTCCC
ATAATGTGCCCAAC
Found at i:91457094 original size:21 final size:21
Alignment explanation
Indices: 91457040--91457097 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
91457030 ATTTTATTAC
91457040 TACCAGGATGAATAGTCATAT
1 TACCAGGATGAATAGTCATAT
* *
91457061 TACTAGGAAGAATAGTCATAT
1 TACCAGGATGAATAGTCATAT
**
91457082 TACCATTATGAATAGT
1 TACCAGGATGAATAGT
91457098 AAATGACATG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (21 bp):
TACCAGGATGAATAGTCATAT
Found at i:91466552 original size:40 final size:40
Alignment explanation
Indices: 91466409--91466653 Score: 349
Period size: 40 Copynumber: 6.3 Consensus size: 40
91466399 TCCTCGTTCA
* * * ** *
91466409 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
91466448 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
91466488 AATGCCTTC--GACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
91466526 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
91466566 AATGCCTTCGGGACTTAACCCGGATTT---AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
91466603 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
91466643 AAGGCCTTCGG
1 AATGCCTTCGG
91466654 ATCTTAGTCC
Statistics
Matches: 191, Mismatches: 9, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
37 37 0.19
38 38 0.20
39 33 0.17
40 83 0.43
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:91466618 original size:117 final size:115
Alignment explanation
Indices: 91466407--91466653 Score: 343
Period size: 117 Copynumber: 2.1 Consensus size: 115
91466397 GCTCCTCGTT
* * **
91466407 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTAACAACTCACACAATGCCTTCGGGACTTAACCCGGA
91466472 TTTAACAACTCGCACGAATGCCTTCGACTTAACCCGGATTTAACAACTCGCA
66 TTT-A-AACTCGCACGAATGCCTTCGACTTAACCCGGATTTAACAACTCGCA
* * *
91466524 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTTAACAACTCACAC-AATGCCTTCGGGACTTAACCCGG
** *
91466589 ATTT-AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
65 ATTTAAACTCGCACGAATGCCTTC--GACTTAACCCGGATTTAACAACTCGCA
*
91466641 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
91466654 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
115 19 0.17
117 69 0.60
118 27 0.23
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (115 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAACAACTCACACAATGCCTTCGGGACTTAACCCGGA
TTTAAACTCGCACGAATGCCTTCGACTTAACCCGGATTTAACAACTCGCA
Found at i:91466650 original size:77 final size:77
Alignment explanation
Indices: 91466409--91466653 Score: 334
Period size: 77 Copynumber: 3.1 Consensus size: 77
91466399 TCCTCGTTCA
* * * *
91466409 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGG-ATT--TAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
91466473 TTAACAACTCGCACG
63 TTAACAACTCGCACG
91466488 AATGCCTTC--GACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTT---AACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
91466551 TTAACAACTCGCACG
63 TTAACAACTCGCACG
91466566 AATGCCTTCGGGACTTAACCCGGATTTAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 AATGCCTTCGGGACTTAACCCGGATTTAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
** * *
91466631 GTATCTCGCACA
66 ACAACTCGCACG
*
91466643 AAGGCCTTCGG
1 AATGCCTTCGG
91466654 ATCTTAGTCC
Statistics
Matches: 151, Mismatches: 9, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
74 1 0.01
76 2 0.01
77 74 0.49
78 49 0.32
79 9 0.06
80 16 0.11
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (77 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
ACAACTCGCACG
Found at i:91466666 original size:117 final size:116
Alignment explanation
Indices: 91466439--91466706 Score: 328
Period size: 117 Copynumber: 2.3 Consensus size: 116
91466429 CGGTTTTAGT
*
91466439 AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGACTTAA
1 AACTCGCACAATGCCTTCGGGACTTAACCCGGATTT-A-AACTCGCACGAATGCCTTCGACTTAA
* * *
91466504 CCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA-AC
64 CCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATAC
91466556 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTT-AACTCGCACGAATGCCTTCGGGACTTA
1 AACTCGCAC-AATGCCTTCGGGACTTAACCCGGATTTAAACTCGCACGAATGCCTTC--GACTTA
** * ** *
91466620 ACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTC
63 ACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATATAC
* * *
91466674 -ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TCGCACAATGCCTTCGGGACTTAACCCGGA
91466707 CAGCATTCAA
Statistics
Matches: 132, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
115 19 0.14
116 3 0.02
117 77 0.58
118 33 0.25
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (116 bp):
AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAAACTCGCACGAATGCCTTCGACTTAACC
CGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATAC
Found at i:91466715 original size:41 final size:41
Alignment explanation
Indices: 91466638--91466715 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
91466628 TTAGTATCTC
* * *
91466638 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
91466679 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
91466716 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:91481404 original size:42 final size:41
Alignment explanation
Indices: 91481302--91481458 Score: 120
Period size: 43 Copynumber: 3.7 Consensus size: 41
91481292 TACAATGCTA
* *** *
91481302 ATGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCC
1 ATGTCCCAGAGATGGTCTTACACAAAATTAAATAT-GATGCC
* * *
91481344 ACTGTCCCAAATAGGGTCTTACACAAAATTAAATATGATGCC
1 A-TGTCCCAGAGATGGTCTTACACAAAATTAAATATGATGCC
* *
91481386 GATGTCCCAGAGATGGTCTTACACGTAAATCTCAAAT-CGATGCC
1 -ATGTCCCAGAGATGGTCTTACAC-AAAAT-T-AAATATGATGCC
**
91481430 AACATCCCAGACG-TGGTCTTACACAAAAT
1 -ATGTCCCAGA-GATGGTCTTACACAAAAT
91481459 CACATATCAA
Statistics
Matches: 93, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
42 26 0.28
43 36 0.39
44 26 0.28
45 5 0.05
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (41 bp):
ATGTCCCAGAGATGGTCTTACACAAAATTAAATATGATGCC
Found at i:91481449 original size:86 final size:85
Alignment explanation
Indices: 91481302--91481458 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 85
91481292 TACAATGCTA
* *
91481302 ATGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAATAGGGTCTTACA
1 ATGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTATCCCAAATAGGGTCTTACA
91481367 CAAAATTAAATATGATGCCG
66 CAAAATTAAATATGATGCCG
* * * *
91481387 ATGTCCCAGAGATGGTCTTACACGTAAATCTCAA-ATCGATGCCAAC-ATCCCAGA-CGTGGTCT
1 ATGTCCCAGACATGGTCTTACACGT-AATC-AAATATCGATGCC-ACTATCCCAAATAG-GGTCT
91481449 TACACAAAAT
62 TACACAAAAT
91481459 CACATATCAA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
85 24 0.39
86 34 0.55
87 4 0.06
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (85 bp):
ATGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTATCCCAAATAGGGTCTTACA
CAAAATTAAATATGATGCCG
Found at i:91487289 original size:53 final size:53
Alignment explanation
Indices: 91487113--91487318 Score: 216
Period size: 55 Copynumber: 3.8 Consensus size: 53
91487103 AAGGTTTAAT
* * * * *
91487113 GATACCATATAAGACCATGCCAAGGCATGGCAATTGGTGAGGTTTCTAAGGTAAG
1 GATACCATGTAAGACCATGCCAAGACATGGC-ATTGGT-AAGTTTATAAGGCAAG
* * * * *
91487168 GAAATCATGTAAGACCATGTCAAGACATGACATTGATAAGTTACTATAAGGCAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TATAAGGC-AAG
* * * *
91487224 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTTATAAGGCAGG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGCAAG
* *
91487276 GATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTT
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTT
91487319 CAAAAGGATA
Statistics
Matches: 123, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
52 3 0.02
53 48 0.39
54 5 0.04
55 63 0.51
56 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGCAAG
Found at i:91487316 original size:108 final size:110
Alignment explanation
Indices: 91487117--91487317 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
91487107 TTTAATGATA
* * *
91487117 CCATATAAGACCATGCCAAGGCATGGCAATTGGTGAGGTTTCTAAGGTAAGGAAATCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGCAATTGGTGAGGTTTATAAGGCAAGGAAACCATGTAAGA
*
91487182 CCATGTCAAGACATGACATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
* * *
91487227 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GTTTATAAGGCAGGGATACCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGCAATTGGTGAGGTTTATAAGGCAAGGAAACCATGTAAGA
* *
91487290 CCATGTCAAGACATGGCAATGGTAAGTT
66 CCATGTCAAGACATGACAATGATAAGTT
91487318 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 48 0.59
109 8 0.10
110 26 0.32
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATATAAGACCATGCCAAGGCATGGCAATTGGTGAGGTTTATAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:91491265 original size:46 final size:46
Alignment explanation
Indices: 91491198--91491322 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
91491188 TGTAACCCGC
** * *
91491198 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
91491244 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
91491290 CCATAAGTGAACTCGGACTCAACTCAACGAGCT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCT
91491323 TAGATGCCCA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:91495399 original size:49 final size:49
Alignment explanation
Indices: 91495343--91495525 Score: 206
Period size: 50 Copynumber: 3.7 Consensus size: 49
91495333 CTGGTACGCA
*
91495343 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
** **
91495392 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCAT-TTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCAG-TACACG
* * ** * *
91495442 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCAGTACACG
* *
91495493 TAGTAGCCTGCACTTAGTACTAAACATATGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
91495526 TCACAATAGA
Statistics
Matches: 112, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
49 33 0.29
50 43 0.38
51 35 0.31
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
Found at i:91495525 original size:101 final size:99
Alignment explanation
Indices: 91495343--91495526 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
91495333 CTGGTACGCA
* *
91495343 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
* *
91495408 GTACTACACATGTGACCTAACCATTTGATACACG
66 GTACTAAACATATGACCTAACCATTTGATACACG
* * ** *
91495442 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCAGTACACATAGTAGCCTGCACT
91495507 TAGTACTAAACATATGACCT
64 TAGTACTAAACATATGACCT
91495527 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 42 0.57
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
GTACTAAACATATGACCTAACCATTTGATACACG
Found at i:91510410 original size:28 final size:29
Alignment explanation
Indices: 91510378--91510438 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
91510368 GTGAGCATGA
*
91510378 ATAT-AAGGTGATTTGGGCCTAACGGGTC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
*
91510406 ATATAAAGGTGATTTGGGCCTAATGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
91510435 ATAT
1 ATAT
91510439 GAATATGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAACGGGCC
Found at i:91516002 original size:11 final size:10
Alignment explanation
Indices: 91515970--91516024 Score: 60
Period size: 11 Copynumber: 5.5 Consensus size: 10
91515960 CATGAGATTT
91515970 TGATAT-ACA
1 TGATATGACA
*
91515979 TGATTTGACA
1 TGATATGACA
91515989 TGATATGCACA
1 TGATATG-ACA
*
91516000 TGATATG-TA
1 TGATATGACA
91516009 TGATATGCACA
1 TGATATG-ACA
91516020 TGATA
1 TGATA
91516025 AATTCATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
9 13 0.34
10 9 0.24
11 16 0.42
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:91516106 original size:25 final size:25
Alignment explanation
Indices: 91516072--91516141 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
91516062 GAGGAAGTGC
*
91516072 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
91516097 AAAATGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
91516122 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
91516142 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:91516265 original size:38 final size:38
Alignment explanation
Indices: 91516193--91516271 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 38
91516183 ATTCTGCCAG
*
91516193 TGGAGAGTTCGGTTGGGTGGGTTGAGTCATTCCCCACA
1 TGGAGAGTTCGGTTGGGTGGGTTGAGTCATTCCCCAAA
91516231 TGGAGAGCTT-GGTT-GGTGGGTTGAGT-AGTCTCCCCAAA
1 TGGAGAG-TTCGGTTGGGTGGGTTGAGTCA-T-TCCCCAAA
91516269 TGG
1 TGG
91516272 GCTTGCATTG
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
36 1 0.03
37 13 0.35
38 21 0.57
39 2 0.05
ACGTcount: A:0.16, C:0.16, G:0.38, T:0.29
Consensus pattern (38 bp):
TGGAGAGTTCGGTTGGGTGGGTTGAGTCATTCCCCAAA
Found at i:91516381 original size:31 final size:31
Alignment explanation
Indices: 91516338--91516421 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
91516328 CGTTTACAGT
*
91516338 AAAGACTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
91516369 AAAGGCTTCGGCCCAGTGACATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
91516400 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
91516422 CTGAGATTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:91523946 original size:11 final size:10
Alignment explanation
Indices: 91523914--91523968 Score: 60
Period size: 11 Copynumber: 5.5 Consensus size: 10
91523904 CATGAGATTT
91523914 TGATAT-ACA
1 TGATATGACA
*
91523923 TGATTTGACA
1 TGATATGACA
91523933 TGATATGCACA
1 TGATATG-ACA
*
91523944 TGATATG-TA
1 TGATATGACA
91523953 TGATATGCACA
1 TGATATG-ACA
91523964 TGATA
1 TGATA
91523969 AATTCATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
9 13 0.34
10 9 0.24
11 16 0.42
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:91524086 original size:24 final size:25
Alignment explanation
Indices: 91524016--91524084 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
91524006 GAGGAAGTGC
* *
91524016 AAAAGGGC-TTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
* *
91524040 GAAATGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
91524065 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
91524085 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
24 6 0.16
25 32 0.84
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:91524339 original size:31 final size:31
Alignment explanation
Indices: 91524304--91524387 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
91524294 CGTTTACAGT
91524304 AAAGGCTTTGGCCCAGTGATATGAATAATGA
1 AAAGGCTTTGGCCCAGTGATATGAATAATGA
* *
91524335 AAAGGCTTTGGCCCAGTGACATGAATAATGT
1 AAAGGCTTTGGCCCAGTGATATGAATAATGA
*
91524366 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTTGGCCCAGTGATATG
91524388 CTAAGATTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAGTGATATGAATAATGA
Found at i:91525086 original size:13 final size:13
Alignment explanation
Indices: 91525068--91525101 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
91525058 TTACATACAA
91525068 GGCCGTATCACAC
1 GGCCGTATCACAC
**
91525081 GGCCGTATCGTAC
1 GGCCGTATCACAC
91525094 GGCCGTAT
1 GGCCGTAT
91525102 TTCCCTCTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.21
Consensus pattern (13 bp):
GGCCGTATCACAC
Found at i:91529584 original size:32 final size:32
Alignment explanation
Indices: 91529547--91529610 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
91529537 AGAAGTAAGA
91529547 AAACTGTCAATCTTTTTATTGAGAAGTTCTAC
1 AAACTGTCAATCTTTTTATTGAGAAGTTCTAC
91529579 AAACTGTCAATCTTTTTATTGAGAAGTTCTAC
1 AAACTGTCAATCTTTTTATTGAGAAGTTCTAC
91529611 CTGATTTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (32 bp):
AAACTGTCAATCTTTTTATTGAGAAGTTCTAC
Found at i:91536148 original size:25 final size:23
Alignment explanation
Indices: 91536111--91536156 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
91536101 TTTGTTTTAA
*
91536111 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
91536134 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
91536157 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:91536424 original size:16 final size:16
Alignment explanation
Indices: 91536403--91536441 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
91536393 GTAGATCGGC
*
91536403 AAAAGCCTAAATACCG
1 AAAAGCCGAAATACCG
*
91536419 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATACCG
91536435 AAAAGCC
1 AAAAGCC
91536442 AAAAGTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.26, G:0.18, T:0.08
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:91536705 original size:30 final size:30
Alignment explanation
Indices: 91536669--91536727 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
91536659 ATAAGGTGAT
* *
91536669 TTGGGTCTAATGGGTCATATGAATATGAAA
1 TTGGGTCTAATAGGCCATATGAATATGAAA
* *
91536699 TTGGGTCTGATAGGCCATATGAATGTGAA
1 TTGGGTCTAATAGGCCATATGAATATGAA
91536728 TCGGGCCGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (30 bp):
TTGGGTCTAATAGGCCATATGAATATGAAA
Found at i:91536751 original size:28 final size:28
Alignment explanation
Indices: 91536711--91536773 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
91536701 GGGTCTGATA
* * *
91536711 GGCCATATGAATGTGAATCGGGCCGA-TG
1 GGCCATATAAATGAG-ATCGGGCCAAGTG
*
91536739 GGCCATATAAATGAGATTGGGCCAAGTG
1 GGCCATATAAATGAGATCGGGCCAAGTG
91536767 GGCCATA
1 GGCCATA
91536774 CGCATGTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 8 0.27
28 22 0.73
ACGTcount: A:0.29, C:0.17, G:0.33, T:0.21
Consensus pattern (28 bp):
GGCCATATAAATGAGATCGGGCCAAGTG
Found at i:91539087 original size:44 final size:42
Alignment explanation
Indices: 91538927--91539097 Score: 132
Period size: 43 Copynumber: 4.0 Consensus size: 42
91538917 TCGGAAAGCT
* * * * *
91538927 AATACAATGCCAACGTCCCAGACGT-GATCTTACATGTAATCA
1 AATACGATACCAACGTCCCAGACATAG-TCTTACACGAAATCA
* * * **
91538969 AATATCAATGCC-ACTATCCCAGACAGGGTCTTACACGAAATCA
1 AATA-CGATACCAAC-GTCCCAGACATAGTCTTACACGAAATCA
* *
91539012 AATACGATACCAATGTCCCAGACATGGTCTTACACGTAAATACCA
1 AATACGATACCAACGTCCCAGACATAGTCTTACACG-AAAT--CA
* * *
91539057 AAT-CGATGCCAACGTCGCAGACGTAGTCTTACACGAAATCA
1 AATACGATACCAACGTCCCAGACATAGTCTTACACGAAATCA
91539098 CATATCGAAA
Statistics
Matches: 107, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
41 2 0.02
42 31 0.29
43 41 0.38
44 28 0.26
45 5 0.05
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (42 bp):
AATACGATACCAACGTCCCAGACATAGTCTTACACGAAATCA
Found at i:91542543 original size:48 final size:48
Alignment explanation
Indices: 91542427--91542591 Score: 194
Period size: 48 Copynumber: 3.5 Consensus size: 48
91542417 TATGTGTGCT
* * * *
91542427 AGTGTTAGACATGTCTGGGACATGCATCGG-CAC-A-TTATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-ACAAGCC
* *
91542472 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCC
* *
91542520 AGTGTAAGACATGTCTGGCACATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCC
* * *
91542568 ACTTTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
91542592 GTGTCAGCAT
Statistics
Matches: 103, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
45 29 0.28
46 1 0.01
47 2 0.02
48 71 0.69
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCC
Found at i:91554069 original size:27 final size:27
Alignment explanation
Indices: 91554039--91554194 Score: 179
Period size: 27 Copynumber: 5.7 Consensus size: 27
91554029 AAATTGTACA
* *
91554039 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
91554066 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
91554093 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
91554120 GCACTAAGTGTGCGAAATGGACTATGTA
1 GCACTAAGTGTGCG-AATTGACTATGTG
* * *
91554148 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
91554175 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
91554195 TTACATAGCA
Statistics
Matches: 109, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
27 85 0.78
28 24 0.22
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:91554099 original size:54 final size:55
Alignment explanation
Indices: 91554038--91554189 Score: 218
Period size: 55 Copynumber: 2.8 Consensus size: 55
91554028 TAAATTGTAC
*
91554038 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAAT-GAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGGAATATGT
* * * *
91554091 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAAATGGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGGAATATGT
* *
91554147 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGA
91554190 GTTGATTACA
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.01
54 41 0.48
55 43 0.50
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGGAATATGT
Found at i:91554154 original size:82 final size:81
Alignment explanation
Indices: 91554039--91554194 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
91554029 AAATTGTACA
* * * *
91554039 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAATGGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
91554103 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91554120 GCACTAAGTGTGCGAAATGGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCG-AATGGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
91554185 TGCGAGTTGA
65 TGCGAATTGA
91554195 TTACATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91554195 original size:27 final size:27
Alignment explanation
Indices: 91554038--91554215 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
91554028 TAAATTGTAC
*
91554038 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
91554065 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
91554091 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
91554119 GGCACTAAGTGTGCGAAATGGACTATGT
1 AGCACTAAGTGTGCG-AATTGACTATGT
* * *
91554147 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * **
91554174 GGCACTAAGTGTGCGAGTTGATTACAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
91554201 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91554216 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:91554206 original size:82 final size:80
Alignment explanation
Indices: 91554037--91554215 Score: 200
Period size: 82 Copynumber: 2.2 Consensus size: 80
91554027 TTAAATTGTA
* * * *
91554037 CAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGAATGGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
*
91554102 GTGCGAATTGACCAT
66 GTGCGAATTGAACAT
* ** *
91554117 GCGGCACTAAGTGTGCGAAATGGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTA
1 -CAGCACTAAGTGTGCG-AATGGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
*
91554181 AGTGTGCGAGTTGATTACAT
63 AGTGTGCGAATTGA--ACAT
*
91554201 -AGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCG
91554216 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
81 16 0.20
82 63 0.77
84 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (80 bp):
CAGCACTAAGTGTGCGAATGGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGAACAT
Found at i:91562193 original size:54 final size:55
Alignment explanation
Indices: 91562133--91562283 Score: 216
Period size: 55 Copynumber: 2.8 Consensus size: 55
91562123 AAATTGTACA
*
91562133 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAAT-GAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGGAATATG-TG
* * * *
91562187 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAAATGGACTATGTG
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGGAATATGTG
* *
91562242 GCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGA
91562284 GTTGATTACA
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
54 42 0.49
55 43 0.51
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (55 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGGAATATGTG
Found at i:91562248 original size:82 final size:81
Alignment explanation
Indices: 91562133--91562288 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
91562123 AAATTGTACA
* * * *
91562133 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
91562197 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91562214 GCACTAAGTGTGCGAAATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCG-AATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
91562279 TGCGAGTTGA
65 TGCGAATTGA
91562289 TTACATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91562292 original size:27 final size:27
Alignment explanation
Indices: 91562133--91562288 Score: 188
Period size: 27 Copynumber: 5.7 Consensus size: 27
91562123 AAATTGTACA
* *
91562133 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
91562160 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
91562187 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
91562214 GCACTAAGTGTGCGAAATGGACTATGTG
1 GCACTAAGTGTGCG-AATTGACTATGTG
* * *
91562242 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
91562269 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
91562289 TTACATAGCA
Statistics
Matches: 111, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
27 86 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:91562299 original size:27 final size:27
Alignment explanation
Indices: 91562133--91562309 Score: 144
Period size: 27 Copynumber: 6.5 Consensus size: 27
91562123 AAATTGTACA
* ** *
91562133 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTACATG
* * *
91562160 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTA-CATG
91562187 GCACTAAGTGTGCGAATTGAC--CATGCG
1 GCACTAAGTGTGCGAATTGACTACAT--G
* **
91562214 GCACTAAGTGTGCGAAATGGACTATGTG
1 GCACTAAGTGTGCG-AATTGACTACATG
* * *
91562242 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTACATG
* * *
91562269 GCACTAAGTGTGCGAGTTGATTACATA
1 GCACTAAGTGTGCGAATTGACTACATG
*
91562296 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
91562310 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
24 2 0.02
27 99 0.80
28 22 0.18
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTACATG
Found at i:91562300 original size:82 final size:80
Alignment explanation
Indices: 91562131--91562309 Score: 200
Period size: 82 Copynumber: 2.2 Consensus size: 80
91562121 TTAAATTGTA
* * * *
91562131 CAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
*
91562196 GTGCGAATTGACCAT
66 GTGCGAATTGAACAT
* ** *
91562211 GCGGCACTAAGTGTGCGAAATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TGGCACTA
1 -CAGCACTAAGTGTGCG-AATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
*
91562275 AGTGTGCGAGTTGATTACAT
63 AGTGTGCGAATTGA--ACAT
*
91562295 -AGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCG
91562310 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
81 16 0.20
82 63 0.77
84 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (80 bp):
CAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGAACAT
Found at i:91564533 original size:407 final size:408
Alignment explanation
Indices: 91563749--91564567 Score: 1514
Period size: 407 Copynumber: 2.0 Consensus size: 408
91563739 AATACTAAAC
*
91563749 TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACGGATTA
1 TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACAGATTA
91563814 TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAACTTACTTTGATTATAAGTTGAGGAT
66 TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAACTTACTTTGATTATAAGTTGAGGAT
91563879 TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
131 TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
*
91563944 TTTACCCTATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
196 TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
91564009 AATGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
261 AATGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
* *
91564074 GAAAAATAGAGAAAATGGGCCAAAGTATGAAATCGACACGGCCTGAACCTCCTCACACGGGCAGA
326 GAAAAACAGAGAAAATGGGCCAAAGTACGAAATCGACACGGCCTGAACCTCCTCACACGGGCAGA
91564139 CCACACGGCCCTACCAAT
391 CCACACGGCCCTACCAAT
91564157 TTGGAATGTTTGAAACTTTTATGTT-TTTTAGTTGAATTCTCAATGTATGATTACCTACAGATTA
1 TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACAGATTA
*
91564221 TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAATTTACTTTGATTATAAGTTGAGGAT
66 TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAACTTACTTTGATTATAAGTTGAGGAT
* **
91564286 TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCTTAAATTATATGTATT
131 TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
*
91564351 TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCGATGCTCCT
196 TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
91564416 AATGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
261 AATGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
* *
91564481 GAAAAACAGAGAAAATGGGCCAAAGTACGAAATTGACACGGCCTGGACCTCCTCACACGGGCAGA
326 GAAAAACAGAGAAAATGGGCCAAAGTACGAAATCGACACGGCCTGAACCTCCTCACACGGGCAGA
* *
91564546 CCACACGGCCGTGCCAAT
391 CCACACGGCCCTACCAAT
91564564 TTGG
1 TTGG
91564568 TAGGCTCGAA
Statistics
Matches: 398, Mismatches: 13, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
407 373 0.94
408 25 0.06
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.33
Consensus pattern (408 bp):
TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACAGATTA
TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAACTTACTTTGATTATAAGTTGAGGAT
TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
AATGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
GAAAAACAGAGAAAATGGGCCAAAGTACGAAATCGACACGGCCTGAACCTCCTCACACGGGCAGA
CCACACGGCCCTACCAAT
Found at i:91568378 original size:54 final size:54
Alignment explanation
Indices: 91568296--91568407 Score: 224
Period size: 54 Copynumber: 2.1 Consensus size: 54
91568286 ATTAATTAGG
91568296 GTTTGTTTCCACAGAACAGAATCTTACTACAGTTTTTAGTCTTCTATAGTCCCA
1 GTTTGTTTCCACAGAACAGAATCTTACTACAGTTTTTAGTCTTCTATAGTCCCA
91568350 GTTTGTTTCCACAGAACAGAATCTTACTACAGTTTTTAGTCTTCTATAGTCCCA
1 GTTTGTTTCCACAGAACAGAATCTTACTACAGTTTTTAGTCTTCTATAGTCCCA
91568404 GTTT
1 GTTT
91568408 ACTCTAACTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.40
Consensus pattern (54 bp):
GTTTGTTTCCACAGAACAGAATCTTACTACAGTTTTTAGTCTTCTATAGTCCCA
Found at i:91569255 original size:28 final size:28
Alignment explanation
Indices: 91569211--91569275 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 28
91569201 TATTTAGTAT
* * *
91569211 CAGT-ACAGTCTGGGCCTTAGCCCTATA
1 CAGTAACAGTCTGAGCCTAAGCCCAATA
* *
91569238 CAGTAACAGTGTGAGCCTAAGCCCAATT
1 CAGTAACAGTCTGAGCCTAAGCCCAATA
*
91569266 CAGTATCAGT
1 CAGTAACAGT
91569276 ACAGTGCAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (28 bp):
CAGTAACAGTCTGAGCCTAAGCCCAATA
Found at i:91569482 original size:28 final size:26
Alignment explanation
Indices: 91569417--91569482 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 26
91569407 AGCAATGCTG
91569417 CTAATAACAGTAAACGTGGCAAAGCCA
1 CTAAT-ACAGTAAACGTGGCAAAGCCA
*
91569444 CCAGAGT--AGTAATTACGTGGCAAAGCCA
1 CTA-A-TACAGTAA--ACGTGGCAAAGCCA
91569472 CTAATACAGTA
1 CTAATACAGTA
91569483 CTTCGTCCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 11
0.70 0.05 0.25
Matches are distributed among these distances:
26 6 0.19
27 3 0.10
28 21 0.68
29 1 0.03
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (26 bp):
CTAATACAGTAAACGTGGCAAAGCCA
Found at i:91582885 original size:16 final size:16
Alignment explanation
Indices: 91582866--91582897 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91582856 TCGGCAAATC
91582866 CCGAAATGTCAAAAAG
1 CCGAAATGTCAAAAAG
*
91582882 CCGAAATGTCGAAAAG
1 CCGAAATGTCAAAAAG
91582898 TCAAAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (16 bp):
CCGAAATGTCAAAAAG
Found at i:91594298 original size:23 final size:22
Alignment explanation
Indices: 91594262--91594304 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
91594252 TATATCCGTA
* *
91594262 CCAAATCATGCCAAATCATAAG
1 CCAAATCATACCAAAACATAAG
91594284 CCAAAGTCATACCAAAACATA
1 CCAAA-TCATACCAAAACATA
91594305 TGTTTCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.49, C:0.28, G:0.07, T:0.16
Consensus pattern (22 bp):
CCAAATCATACCAAAACATAAG
Found at i:91594817 original size:155 final size:155
Alignment explanation
Indices: 91594535--91594841 Score: 533
Period size: 155 Copynumber: 2.0 Consensus size: 155
91594525 AAACATATCA
*
91594535 CAATTTATCTAGACAATACATGCCATACTTTAATATTTACACTTTCAAAAAGTACCAAAGGTAAG
1 CAATTTATCTAGACAATACATGCCATACTTTAATATTTACACTTTCAAAAAGTACCAAAGATAAG
91594600 TTTGATAGTGTGGTGATGATCCTCAACAATCCTCGAGCCTACAGTAGCTTCGATATCTAAAACAC
66 TTTGATAGTGTGGTGATGATCCTCAACAATCCTCGAGCCTACAGTAGCTTCGATATCTAAAACAC
* *
91594665 AATGCAAACACATATAAAGTAATCT
131 AATGCAAACACACACAAAGTAATCT
* *
91594690 CAATTTATCTAGACTATACATGCCATACTTTAATATTTACACTTTCAAAAAGTATCAAAGATAAG
1 CAATTTATCTAGACAATACATGCCATACTTTAATATTTACACTTTCAAAAAGTACCAAAGATAAG
* * *
91594755 TTTGATAGTGTGGTGATGATCCTCGACAATCCTCGAGCTTCCAGTAGCTTCGATATCTAAAACAC
66 TTTGATAGTGTGGTGATGATCCTCAACAATCCTCGAGCCTACAGTAGCTTCGATATCTAAAACAC
*
91594820 AATGCAAGCACACACAAAGTAA
131 AATGCAAACACACACAAAGTAA
91594842 GCTTTCAAAA
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
155 143 1.00
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.29
Consensus pattern (155 bp):
CAATTTATCTAGACAATACATGCCATACTTTAATATTTACACTTTCAAAAAGTACCAAAGATAAG
TTTGATAGTGTGGTGATGATCCTCAACAATCCTCGAGCCTACAGTAGCTTCGATATCTAAAACAC
AATGCAAACACACACAAAGTAATCT
Found at i:91610066 original size:50 final size:50
Alignment explanation
Indices: 91609949--91610380 Score: 266
Period size: 50 Copynumber: 8.6 Consensus size: 50
91609939 TGTGAGAACA
* * * * ** *
91609949 CATGTGTAGTACTATGTGCGGGCTACTATGTGT-TTAAGATAGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGAT--TGCTAGGTCG
* *
91610001 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTCG
* * * * * * * *
91610051 CATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCG-TTAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATT-GC-TAGGTCG
* * * * ** *
91610102 CGTGTGTAGTATTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAACTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATTGCTAGGTCG
* * * *
91610152 CATGTTTAGTACTAATTGCTA-GCTACTACGTGTA-TCAAATTGATAGGTCG
1 CATGTGTAGTACTAAGTGC-AGGCTACTACGTGTACT-AGATTGCTAGGTCG
* * * * * * * *
91610202 CATATGTACTACTAAGTGCAGGCTACTATGCGTACCT-G-TTAACTTTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGATT-GC-TAGGTCG
* ** * * * * * *
91610253 CGTGTGTAGTACTAAGTGCAGGCTACTATATGTACCATATGGTTAAGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTCG
* * * *
91610303 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTCG
*
91610353 CATGTGTAGTTCTAAGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
91610381 TGCGTACCAG
Statistics
Matches: 292, Mismatches: 75, Indels: 28
0.74 0.19 0.07
Matches are distributed among these distances:
49 5 0.02
50 183 0.63
51 67 0.23
52 36 0.12
53 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTCG
Found at i:91610227 original size:151 final size:150
Alignment explanation
Indices: 91609998--91610388 Score: 570
Period size: 151 Copynumber: 2.6 Consensus size: 150
91609988 TAGTTTTAGG
* * *
91609998 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTTGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-AAATTGATAGGTCGCATGTGTAGTAC
* *
91610063 TAAGTACAGGCTACTATGCGTA-CTCGTTAACTTCGATCACGTGTGTAGTATTAAGTGCAGGCTA
65 TAAGTGCAGGCTACTATGCGTACCT-GTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
* *
91610127 CTACGTGTATCAGATGGTTAAC
129 CTACATGTACCAGATGGTTAAC
* * * * *
91610149 TCACATGTTTAGTACTAATTGCTA-GCTACTACGTGTATCAAATTGATAGGTCGCATATGTACTA
1 TCACGTGTGTAGTACTAAGTGC-AGGCTACTACGTGTA-CAAATTGATAGGTCGCATGTGTAGTA
*
91610213 CTAAGTGCAGGCTACTATGCGTACCTGTTAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCTA
64 CTAAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
* * *
91610278 CTATATGTACCATATGGTTAAG
129 CTACATGTACCAGATGGTTAAC
*
91610300 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTTC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAAATTGATAGGTCGCATGTGTAGTAC
91610365 TAAGTGCAGGCTACTATGCGTACC
65 TAAGTGCAGGCTACTATGCGTACC
91610389 AGAGAGCTTC
Statistics
Matches: 213, Mismatches: 23, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
150 1 0.00
151 208 0.98
152 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (150 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAATTGATAGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACT
ACATGTACCAGATGGTTAAC
Found at i:91610338 original size:101 final size:100
Alignment explanation
Indices: 91609951--91610338 Score: 265
Period size: 101 Copynumber: 3.8 Consensus size: 100
91609941 TGAGAACACA
* * *** * *
91609951 TGTGTAGTACTATGTGCGGGCTACTATGTGTTTAAGATAGTTTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCATATAG--TTAAGTCACGTGTGTAGTACTAA
* ** *
91610016 GTGCAGGCTACTACGTGTA-CTAGATT-GCTAGGTTGCA-
64 GTGCAGGCTACTACGTGTACCT-G-TTAACTTTGAT-CAC
* * * * * *
91610053 TGTGTAGTACTAAGTACAGGCTACTATGCGTACTCGT-TAACTT-CGATCACGTGTGTAGTATTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CATAT-AGTTAAG-TCACGTGTGTAGTACTA
* *
91610116 AGTGCAGGCTACTACGTGTATCAGATGGTTAAC--TCA-CA-
63 AGTGCAGGCTACTACGTGTA-C--CT-GTTAACTTTGATCAC
* * * * * * * * * * * *
91610154 TGTTTAGTACTAATTGCTA-GCTACTACGTGTATCAAATTGATAGGTCGCATATGTACTACTAAG
1 TGTGTAGTACTAAGTGC-AGGCTACTATGTGTACCATATAGTTAAGTCACGTGTGTAGTACTAAG
* *
91610218 TGCAGGCTACTATGCGTACCTGTTAACTTTGATCAC
65 TGCAGGCTACTACGTGTACCTGTTAACTTTGATCAC
* *
91610254 GTGTGTAGTACTAAGTGCAGGCTACTATATGTACCATATGGTTAAGTCACGTGTGTAGTACTAAG
1 -TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCATATAGTTAAGTCACGTGTGTAGTACTAAG
91610319 TGCAGGCTACTACGTGTACC
65 TGCAGGCTACTACGTGTACC
91610339 AAATTGATAG
Statistics
Matches: 215, Mismatches: 54, Indels: 35
0.71 0.18 0.12
Matches are distributed among these distances:
96 6 0.03
97 1 0.00
98 2 0.01
99 3 0.01
100 34 0.16
101 134 0.62
102 29 0.13
103 1 0.00
104 2 0.01
105 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCATATAGTTAAGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCTGTTAACTTTGATCAC
Found at i:91610388 original size:50 final size:50
Alignment explanation
Indices: 91609994--91610389 Score: 296
Period size: 50 Copynumber: 7.9 Consensus size: 50
91609984 AAGATAGTTT
* * * *
91609994 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGC
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
** * * * * *
91610044 TAGGTTGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTC--GTTAA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAAATTGA
* * * * * * * *
91610093 CTTCGATCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGT
1 --TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
** * * *
91610145 TAACTCACATGTTTAGTACTAATTGCTA-GCTACTACGTGTATCAAATTGA
1 TAGGTCACATGTGTAGTACTAAGTGC-AGGCTACTACGTGTACCAAATTGA
* * * * * ** *
91610195 TAGGTCGCATATGTACTACTAAGTGCAGGCTACTATGCGTACC-TGTTAA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* * * ** * * *
91610244 CTTTGATCACGTGTGTAGTACTAAGTGCAGGCTACTATATGTACCATATGGT
1 --TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* *
91610296 TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* * * *
91610346 TAGGTCGCATGTGTAGTTCTAAGTGCAGGCTACTATGCGTACCA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
91610390 GAGAGCTTCG
Statistics
Matches: 263, Mismatches: 73, Indels: 20
0.74 0.21 0.06
Matches are distributed among these distances:
49 6 0.02
50 186 0.71
51 68 0.26
52 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
Found at i:91614820 original size:17 final size:18
Alignment explanation
Indices: 91614789--91614822 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
91614779 CATATTACGA
91614789 GCCCATGTAGGCCCACAC
1 GCCCATGTAGGCCCACAC
91614807 GCCCATGT-GGCCCACA
1 GCCCATGTAGGCCCACA
91614823 TAGCCCAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.21, C:0.44, G:0.24, T:0.12
Consensus pattern (18 bp):
GCCCATGTAGGCCCACAC
Found at i:91614828 original size:18 final size:18
Alignment explanation
Indices: 91614788--91614829 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
91614778 CCATATTACG
91614788 AGCCCATGTAGGCCCACA
1 AGCCCATGTAGGCCCACA
*
91614806 CGCCCATGT-GGCCCACA
1 AGCCCATGTAGGCCCACA
91614823 TAGCCCA
1 -AGCCCA
91614830 GAAATGGCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.24, C:0.43, G:0.21, T:0.12
Consensus pattern (18 bp):
AGCCCATGTAGGCCCACA
Found at i:91625901 original size:17 final size:18
Alignment explanation
Indices: 91625879--91625913 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
91625869 ACCCATTCAT
*
91625879 ATGTCTA-TACGAATTTA
1 ATGTCTAGTAAGAATTTA
91625896 ATGTCTAGTAAGAATTTA
1 ATGTCTAGTAAGAATTTA
91625914 CCTATTGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (18 bp):
ATGTCTAGTAAGAATTTA
Found at i:91627416 original size:40 final size:40
Alignment explanation
Indices: 91627298--91627417 Score: 116
Period size: 40 Copynumber: 3.0 Consensus size: 40
91627288 CACATTAAAT
* * * *
91627298 CGAAGCTATCTCGATATTGTACACTTAGTGCCACATAAAGC
1 CGAAGCTATCTCGA-ATTGCACACTAAGTGCCAAATATAGC
* * ****
91627339 CGAAGGTAT-TCCAATTTGCACACTAAGTGTTGTATATAGC
1 CGAAGCTATCTCGAA-TTGCACACTAAGTGCCAAATATAGC
*
91627379 CGAAGCTATCTCGAAATGCACACTAAGTGCCAAATATAG
1 CGAAGCTATCTCGAATTGCACACTAAGTGCCAAATATAG
91627418 TAGATTTGTC
Statistics
Matches: 61, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
39 1 0.02
40 48 0.79
41 12 0.20
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (40 bp):
CGAAGCTATCTCGAATTGCACACTAAGTGCCAAATATAGC
Found at i:91628598 original size:9 final size:9
Alignment explanation
Indices: 91628559--91628583 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
91628549 AGAATGGCTC
91628559 TGAAAGAGT
1 TGAAAGAGT
91628568 TGAAAGAGT
1 TGAAAGAGT
91628577 TGAAAGA
1 TGAAAGA
91628584 TCAGTTGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.32, T:0.20
Consensus pattern (9 bp):
TGAAAGAGT
Found at i:91634021 original size:49 final size:50
Alignment explanation
Indices: 91633949--91634182 Score: 276
Period size: 49 Copynumber: 4.7 Consensus size: 50
91633939 TGAGGCCACG
* *
91633949 TGTGTAGTACTAATTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* * * * *
91633998 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACA
* * * ** *
91634049 TGTGTAGTACTAAGTGCAAGCTACTACGTATATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* *
91634099 TGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CATGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GATAATTAGGTCACA
* *
91634148 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
91634183 AATAGGTTTT
Statistics
Matches: 156, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
49 73 0.47
50 46 0.29
51 37 0.24
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
Found at i:91637308 original size:40 final size:40
Alignment explanation
Indices: 91637253--91637332 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
91637243 TTCAACATTA
91637253 GAAGTAAACTCACTTTGAACTCATTTAGATTACCATTCAT
1 GAAGTAAACTCACTTTGAACTCATTTAGATTACCATTCAT
91637293 GAAGTAAACTCACTTTGAACTCATTTAGATTACCATTCAT
1 GAAGTAAACTCACTTTGAACTCATTTAGATTACCATTCAT
91637333 TATCACATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (40 bp):
GAAGTAAACTCACTTTGAACTCATTTAGATTACCATTCAT
Found at i:91649958 original size:40 final size:40
Alignment explanation
Indices: 91649720--91649944 Score: 378
Period size: 40 Copynumber: 5.6 Consensus size: 40
91649710 GGATTGATAC
*
91649720 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
91649760 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
91649800 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
91649840 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
91649880 CCAGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
91649920 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
91649945 AGCTAGTAGC
Statistics
Matches: 173, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 173 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:91654963 original size:21 final size:21
Alignment explanation
Indices: 91654938--91655006 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
91654928 TAGCCTTCAG
*
91654938 GCTTCTGTTTAGCATTTGTGT
1 GCTTCAGTTTAGCATTTGTGT
* *
91654959 GCTTCAG-TTAGCCTTCG-G-
1 GCTTCAGTTTAGCATTTGTGT
* *
91654977 GCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTTAGCATTTGTGT
91654998 GCTTCAGTT
1 GCTTCAGTT
91655007 AGCCTTCGAG
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
18 6 0.16
19 8 0.22
20 9 0.24
21 14 0.38
ACGTcount: A:0.10, C:0.22, G:0.25, T:0.43
Consensus pattern (21 bp):
GCTTCAGTTTAGCATTTGTGT
Found at i:91654974 original size:39 final size:39
Alignment explanation
Indices: 91654920--91655058 Score: 215
Period size: 39 Copynumber: 3.6 Consensus size: 39
91654910 GCTCTGATGA
* * *
91654920 GCTTCAGTTAGCCTTCAGGCTTCTGTTTAGCATTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
91654959 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
91654998 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
91655037 GCTTCAGCTAGACTTCGGGCTT
1 GCTTCAGTTAGCCTTCGGGCTT
91655059 TAAATCGCGA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:91659795 original size:21 final size:21
Alignment explanation
Indices: 91659771--91659834 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
91659761 AGCCTTCAGG
*
91659771 CTTCCGTTTAGCACTTGTGTG
1 CTTCCGTTTAGCACTTGTGTA
* * *
91659792 CTTCAGTTT-GC-CTT-CGCA
1 CTTCCGTTTAGCACTTGTGTA
91659810 CTTCCGTTTAGCACTTGTGTA
1 CTTCCGTTTAGCACTTGTGTA
91659831 CTTC
1 CTTC
91659835 AGTTAGCCTT
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 9 0.27
19 5 0.15
20 5 0.15
21 14 0.42
ACGTcount: A:0.11, C:0.28, G:0.19, T:0.42
Consensus pattern (21 bp):
CTTCCGTTTAGCACTTGTGTA
Found at i:91659806 original size:39 final size:39
Alignment explanation
Indices: 91659752--91659875 Score: 153
Period size: 39 Copynumber: 3.2 Consensus size: 39
91659742 GCTCTGATGA
*
91659752 GCTTCTGTTAGCCTTC-AGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGA-GCTTCCGTTTAGCACTTGTGT
*
91659791 GCTTCAGTTTGCCTTCGCA-CTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCG-AGCTTCCGTTTAGCACTTGTGT
* ** * *
91659830 ACTTCAGTTAGCCTTCGAGCTTCCAATAAGCACTTATGT
1 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTGTGT
91659869 GCTTCAG
1 GCTTCAG
91659876 CTAGACTTTG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 71 0.97
41 1 0.01
ACGTcount: A:0.15, C:0.27, G:0.20, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTGTGT
Found at i:91660460 original size:12 final size:12
Alignment explanation
Indices: 91660443--91660472 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
91660433 CAAAAAAATC
91660443 TTATTTTATGAT
1 TTATTTTATGAT
91660455 TTATTTTATGAT
1 TTATTTTATGAT
*
91660467 ATATTT
1 TTATTT
91660473 GAATTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (12 bp):
TTATTTTATGAT
Found at i:91662330 original size:8 final size:8
Alignment explanation
Indices: 91662317--91662356 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
91662307 CTAGATCGGT
*
91662317 AAAAGCCA
1 AAAAGCCG
91662325 AAAAGCCG
1 AAAAGCCG
*
91662333 AAATGCCG
1 AAAAGCCG
*
91662341 AAATGCCG
1 AAAAGCCG
91662349 AAAAGCCG
1 AAAAGCCG
91662357 GTATTTTGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.47, C:0.25, G:0.23, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:91662801 original size:27 final size:26
Alignment explanation
Indices: 91662771--91662882 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
91662761 AGGAAGCGTC
* *
91662771 CTGGTGGCTATACCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* * *
91662798 CTGGTGACTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
91662825 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
91662853 CTGGTGACTTTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
91662879 CTGG
1 CTGG
91662883 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.10
27 47 0.67
28 16 0.23
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:91662879 original size:54 final size:54
Alignment explanation
Indices: 91662771--91662882 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
91662761 AGGAAGCGTC
*
91662771 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATTTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * * *
91662825 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTTTGTCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
91662879 CTGG
1 CTGG
91662883 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:91670369 original size:27 final size:26
Alignment explanation
Indices: 91670305--91670404 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 26
91670295 AGTGGCTACA
* *
91670305 CCACAATTATCTGATCTAGTGACTCTG
1 CCAC-ATTATCTGTTCTGGTGACTCTG
* *
91670332 CGACATATATCTGTTCTGGTGGCTCTG
1 CCACAT-TATCTGTTCTGGTGACTCTG
*
91670359 CCACGATTATCTGTGTCTGGTGACTTTG
1 CCAC-ATTATCTGT-TCTGGTGACTCTG
*
91670387 TCACATTATCTGTTCTGG
1 CCACATTATCTGTTCTGG
91670405 CAGCCATGCT
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
26 7 0.11
27 39 0.63
28 16 0.26
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
CCACATTATCTGTTCTGGTGACTCTG
Found at i:91698930 original size:106 final size:106
Alignment explanation
Indices: 91698745--91698955 Score: 395
Period size: 106 Copynumber: 2.0 Consensus size: 106
91698735 AGTATTACTA
91698745 GAGCATAACATCTTCTACTAAACATTTTATTATCATAAACAAATCACATCGTAAATCAGAGTATC
1 GAGCATAACATCTTCTACTAAACATTTTATTATCATAAACAAATCACATCGTAAATCAGAGTATC
91698810 ATCAACCAAAATCATACATATAGTCCCTTTTACAAGCCCTT
66 ATCAACCAAAATCATACATATAGTCCCTTTTACAAGCCCTT
* *
91698851 GAGCATAACATCTTCTACTGAACATTTTATTATCATAAACAAATCACATTGTAAATCAGAGTATC
1 GAGCATAACATCTTCTACTAAACATTTTATTATCATAAACAAATCACATCGTAAATCAGAGTATC
*
91698916 ATCAACCAAAATCATACATATAGTCCCTTTTTCAAGCCCT
66 ATCAACCAAAATCATACATATAGTCCCTTTTACAAGCCCT
91698956 CGAGGCCTTA
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 102 1.00
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.31
Consensus pattern (106 bp):
GAGCATAACATCTTCTACTAAACATTTTATTATCATAAACAAATCACATCGTAAATCAGAGTATC
ATCAACCAAAATCATACATATAGTCCCTTTTACAAGCCCTT
Found at i:91706101 original size:7 final size:8
Alignment explanation
Indices: 91706084--91706110 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
91706074 TCTGATTGGG
91706084 TTTATTTT
1 TTTATTTT
91706092 TTTATTTT
1 TTTATTTT
91706100 TTTATTTT
1 TTTATTTT
91706108 TTT
1 TTT
91706111 CGCATAGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTATTTT
Found at i:91712849 original size:56 final size:56
Alignment explanation
Indices: 91712787--91712922 Score: 193
Period size: 56 Copynumber: 2.4 Consensus size: 56
91712777 TCCCAGATAG
* * * * *
91712787 GGTCTTACTCGCAAACGTATAT-AGGAATCACATATTGATGTCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCA-GAATCACATATCGATGCCAACGTATTAAACAT
* *
91712843 GGTCTTACTCGCACACATATATCATAATCACATATCGATGCCAACGTGTTAAACAT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
91712899 GGTCTTACTCGCACACATATATCA
1 GGTCTTACTCGCACACATATATCA
91712923 ATGCCATGGT
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
56 71 0.99
57 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
Found at i:91718680 original size:27 final size:27
Alignment explanation
Indices: 91718650--91718799 Score: 178
Period size: 27 Copynumber: 5.5 Consensus size: 27
91718640 AAATTGTACA
*
91718650 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
91718677 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
91718704 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
91718731 GCACTAAGTGTGCGAAATGGACTATGTG
1 GCACTAAGTGTGCG-AATTGACTATGTG
* * *
91718759 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
91718786 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91718800 GTTGATTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
27 79 0.75
28 27 0.25
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:91718713 original size:54 final size:54
Alignment explanation
Indices: 91718650--91718799 Score: 196
Period size: 55 Copynumber: 2.7 Consensus size: 54
91718640 AAATTGTACA
*
91718650 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAAT-GAATATGAT-
1 GCACTAAGTGTGCGATT-GACTATGTGGCACTAAGTGTGCGAAATGGAATATG-TG
* * *
91718704 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAAATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACTATGTGGCACTAAGTGTGCGAAATGGAATATGTG
* *
91718759 GCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTGGCACTAAGTGTGCG
91718800 GTTGATTACA
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
54 40 0.48
55 44 0.52
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACTATGTGGCACTAAGTGTGCGAAATGGAATATGTG
Found at i:91718765 original size:82 final size:81
Alignment explanation
Indices: 91718650--91718799 Score: 212
Period size: 82 Copynumber: 1.8 Consensus size: 81
91718640 AAATTGTACA
* * *
91718650 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
91718714 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
91718731 GCACTAAGTGTGCGAAATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCG-AATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
91718796 TGCG
65 TGCG
91718800 GTTGATTACA
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 15 0.25
82 45 0.75
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91718815 original size:26 final size:26
Alignment explanation
Indices: 91718759--91718826 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
91718749 GGACTATGTG
* * *
91718759 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCG-GTTGATTACATA
91718786 GCACTAAGTGTGCGGTTGATTACATA
1 GCACTAAGTGTGCGGTTGATTACATA
*
91718812 GCACTGAGTGTGCGG
1 GCACTAAGTGTGCGG
91718827 GCTCAATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.62
27 14 0.38
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGGTTGATTACATA
Found at i:91726773 original size:82 final size:81
Alignment explanation
Indices: 91726658--91726813 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
91726648 AAATTGTACA
* * *
91726658 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
91726722 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
91726739 GCACTAAGTGTGCGAAATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCG-AATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
91726804 TGCGAGTTGA
65 TGCGAATTGA
91726814 TTACATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91726797 original size:55 final size:54
Alignment explanation
Indices: 91726658--91726808 Score: 205
Period size: 55 Copynumber: 2.8 Consensus size: 54
91726648 AAATTGTACA
* *
91726658 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT
* * * *
91726712 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAAATGGACTATG-T
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAAT-GAATATGAT
* *
91726766 GGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGA
91726809 GTTGATTACA
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
54 41 0.49
55 43 0.51
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT
Found at i:91726817 original size:27 final size:27
Alignment explanation
Indices: 91726658--91726813 Score: 181
Period size: 27 Copynumber: 5.7 Consensus size: 27
91726648 AAATTGTACA
*
91726658 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
91726685 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
91726712 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
91726739 GCACTAAGTGTGCGAAATGGACTATGTG
1 GCACTAAGTGTGCG-AATTGACTATGTG
* * *
91726767 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
91726794 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
91726814 TTACATAGCA
Statistics
Matches: 111, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
27 84 0.76
28 27 0.24
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:91726824 original size:27 final size:27
Alignment explanation
Indices: 91726767--91726834 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
91726757 GGACTATGTG
* * *
91726767 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGATTACATA
91726794 GCACTAAGTGTGCGAGTTGATTACATA
1 GCACTAAGTGTGCGAGTTGATTACATA
*
91726821 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
91726835 GGCTCAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGATTACATA
Found at i:91726825 original size:82 final size:80
Alignment explanation
Indices: 91726656--91726834 Score: 200
Period size: 82 Copynumber: 2.2 Consensus size: 80
91726646 TTAAATTGTA
* * *
91726656 CAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
*
91726721 GTGCGAATTGACCAT
66 GTGCGAATTGAACAT
* * ** *
91726736 GCGGCACTAAGTGTGCGAAATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TGGCACTA
1 -CAGCACTAAGTGTGCG-AATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
*
91726800 AGTGTGCGAGTTGATTACAT
63 AGTGTGCGAATTGA--ACAT
*
91726820 -AGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCG
91726835 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
81 16 0.20
82 63 0.77
84 3 0.04
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (80 bp):
CAGCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGAACAT
Found at i:91728565 original size:16 final size:16
Alignment explanation
Indices: 91728544--91728574 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91728534 ATATATTTTC
*
91728544 ATTTGCATCATATATA
1 ATTTGCATCAAATATA
91728560 ATTTGCATCAAATAT
1 ATTTGCATCAAATAT
91728575 TAAATAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATCAAATATA
Found at i:91728853 original size:56 final size:56
Alignment explanation
Indices: 91728761--91728925 Score: 192
Period size: 56 Copynumber: 2.9 Consensus size: 56
91728751 GTCTTACATG
* * * *
91728761 TAATCACATATCGGTGCC-AC-TATCCTAGACAGGGTCTTACTCGCAAACGTATATCGA
1 TAATCACATATCGATGCCAACATAT--TAAACATGGTCTTACTCGCAAACATATATC-A
* * *
91728818 -AATCACATATCGATGTCAACATATTAAACGTGGTCTTACTCGCAGACATATATCA
1 TAATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCAAACATATATCA
* * *
91728873 TAATCACATATCGATGCCAACGTGTTAAACATGGTCTTACTCGCACACATATA
1 TAATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCAAACATATA
91728926 CCGATGCCAT
Statistics
Matches: 93, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
55 1 0.01
56 87 0.94
57 2 0.02
58 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (56 bp):
TAATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCAAACATATATCA
Found at i:91734978 original size:42 final size:43
Alignment explanation
Indices: 91734868--91735024 Score: 151
Period size: 42 Copynumber: 3.7 Consensus size: 43
91734858 AATGAGTACA
* * * *
91734868 ATGCCGATGTCCCGGACGTGGTCTTACATGTAACTCAG-TATCG
1 ATGCCTATGTCCCAGACATGGTCTTACATGTAAATCAGATA-CG
* * *
91734911 ATGCCTCTATCCCAGACA-GGCTCTTAAATG-AAATCAGATACG
1 ATGCCTATGTCCCAGACATGG-TCTTACATGTAAATCAGATACG
* * *
91734953 ATGCCTATGTCCCAGACATGTTCTTACACGTAAATCTCAAAT-CG
1 ATGCCTATGTCCCAGACATGGTCTTACATGTAAA--TCAGATACG
*
91734997 AGGCCTATGTCCCAGACATGGTCTTACA
1 ATGCCTATGTCCCAGACATGGTCTTACA
91735025 CGATATCTCA
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 33 0.35
43 27 0.29
44 28 0.30
45 5 0.05
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCTATGTCCCAGACATGGTCTTACATGTAAATCAGATACG
Found at i:91738502 original size:40 final size:40
Alignment explanation
Indices: 91738458--91738679 Score: 222
Period size: 40 Copynumber: 5.6 Consensus size: 40
91738448 GCTCCTCGTT
*
91738458 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
91738498 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
91738538 CAAATGCCTTCAGGACATAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* * * *
91738578 CCAATGCCTTCGGG-CTTAGACCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
91738617 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
91738658 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
91738680 TGACATCATT
Statistics
Matches: 152, Mismatches: 21, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
38 3 0.02
39 26 0.17
40 108 0.71
41 15 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:91738570 original size:80 final size:79
Alignment explanation
Indices: 91738458--91738627 Score: 245
Period size: 80 Copynumber: 2.1 Consensus size: 79
91738448 GCTCCTCGTT
* * *
91738458 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA-ACCCG
1 CAAATGCCTTCAGGACATAACCCGATTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGA-CCG
*
91738522 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
*
91738538 CAAATGCCTTCAGGACATAACCCAGATT-TAGTAACTCGCACCAATGCCTTCGGGCTTAGACCGG
1 CAAATGCCTTCAGGACATAACCC-GATTATAGTAACTCGCACAAATGCCTTCGGGCTTAGACCGG
*
91738602 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
91738617 CAAATGCCTTC
1 CAAATGCCTTC
91738628 GGATCTTAGT
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
79 32 0.39
80 47 0.57
81 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCAGGACATAACCCGATTATAGTAACTCGCACAAATGCCTTCGGGCTTAGACCGGA
ATTAGTAACTCGCA
Found at i:91738666 original size:79 final size:80
Alignment explanation
Indices: 91738458--91738676 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 80
91738448 GCTCCTCGTT
* * * * *
91738458 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA-ACCCG
1 CAAATGCCTTCAGGACATAACCCAGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGACCCG
*
91738522 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* * *
91738538 CAAATGCCTTCAGGACATAACCCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGA-CCG
1 CAAATGCCTTCAGGACATAACCCAGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGACCCG
*
91738601 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* ** * * *
91738617 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAG
1 CAAATGCCTTCAGGA-CATAACCCAGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAG
91738677 CCCTGACATC
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.49
80 54 0.46
81 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCAGGACATAACCCAGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGACCCGG
AATTAGTAACTCGCA
Found at i:91743436 original size:40 final size:40
Alignment explanation
Indices: 91743392--91743663 Score: 420
Period size: 40 Copynumber: 6.8 Consensus size: 40
91743382 GGGTATAGCT
* *
91743392 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
91743432 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
91743472 ACTCGCAGAAATGCCTTCGGGACTTAGCCCAGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* **
91743512 ACTCGCTCAAATGCCTTCGAAACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
91743552 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
91743592 ACTCGCACAACTGCCTTCGGGACTTAGCCCGGA-ACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* *
91743632 ACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
91743664 TTATCATCCA
Statistics
Matches: 212, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.00
40 211 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Done.