Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 273 of 362
Found at i:92330423 original size:47 final size:47
Alignment explanation
Indices: 92330362--92330532 Score: 261
Period size: 47 Copynumber: 3.6 Consensus size: 47
92330352 TACATATATT
* * * *
92330362 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
92330409 TCACATTGGCCATTCGTCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
92330456 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
92330503 TCACATTGGCCATTCAGCCTTATCACATAT
1 TCACATTGGCCATTCGGCCTTATCACATAT
92330533 TCACATCACA
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:92341878 original size:47 final size:47
Alignment explanation
Indices: 92341805--92342033 Score: 200
Period size: 47 Copynumber: 4.9 Consensus size: 47
92341795 AGGGTAAGGT
* *
92341805 GCCGATGTCATGTCCTAGACACGGTCTTACATTGGCTCAT-ATCTC-AA
1 GCCGATG-CATGTCCTAGACATGGTCTTACACTGGCT-ATCATCTCGAA
* * *
92341852 GTCGATGCCATGTCTTAGACATGGTCTTACACTGGCTATCATCTCGTA
1 GCCGATG-CATGTCCTAGACATGGTCTTACACTGGCTATCATCTCGAA
* * * *
92341900 GCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTTAT-GTCTTGAG
1 GCCGATGCATGTCCTAGACATGGTCTTACACTGGC-TATCATCTCGAA
* * ** *
92341946 GCCAATGCATGTCCTAGACAT-GTCTTACACTAGCCCTCGTCTC-AA
1 GCCGATGCATGTCCTAGACATGGTCTTACACTGGCTATCATCTCGAA
* * * *
92341991 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
1 -GCCGATG-CATGTCCTAGACATGGTCTTACACTGGCTATCAT
92342034 AATGTGGCCG
Statistics
Matches: 152, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.01
46 61 0.40
47 65 0.43
48 24 0.16
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (47 bp):
GCCGATGCATGTCCTAGACATGGTCTTACACTGGCTATCATCTCGAA
Found at i:92341954 original size:46 final size:45
Alignment explanation
Indices: 92341813--92342024 Score: 176
Period size: 46 Copynumber: 4.6 Consensus size: 45
92341803 GTGCCGATGT
* * * * * * *
92341813 CATGTCCTAGACACGGTCTTACATTGGCTCATATCTCAAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-ATGTCTCGAGCCAATG
** * *
92341859 CCATGTCTTAGACATGGTCTTACACTGGCTATCATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTAT-GTCTCG-AGCCAATG
*
92341907 CATGTCCCAGACAT-GTCTTACACTGGCTTATGTCTTGAGGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGC-TATGTCTCGA-GCCAATG
* * ** *
92341953 CATGTCCTAGACAT-GTCTTACACTAGCCCTCGTCTCAATGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAT-GTCTCGA-GCCAATG
92341999 CCATGTCCCAGACATGGTCTTACACT
1 -CATGTCCCAGACATGGTCTTACACT
92342025 AGCTCTCATA
Statistics
Matches: 140, Mismatches: 18, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
45 2 0.01
46 62 0.44
47 59 0.42
48 17 0.12
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGGCTATGTCTCGAGCCAATG
Found at i:92343366 original size:40 final size:40
Alignment explanation
Indices: 92343319--92343412 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
92343309 CTTGGTATTG
92343319 CACACTTACTGCCT-CATATAGCCGAAGCTA-TTCCAATTCA
1 CACACTTACTG-CTGCATATAGCCGAAGCTATTTCCAA-TCA
* **
92343359 CACACTTAGTGCTGTTTATAGCCGAAGCTATTTCCAATCA
1 CACACTTACTGCTGCATATAGCCGAAGCTATTTCCAATCA
*
92343399 CACACTTAGTGCTG
1 CACACTTACTGCTG
92343413 AACATAGTCG
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
39 2 0.04
40 41 0.84
41 6 0.12
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (40 bp):
CACACTTACTGCTGCATATAGCCGAAGCTATTTCCAATCA
Found at i:92350753 original size:40 final size:40
Alignment explanation
Indices: 92350703--92350797 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
92350693 ATCTCGATAA
* * *
92350703 CGCACGCTTAGTGCCTCA-TATAGCCGAAGCTATTCCAAGT
1 CGCACACTTAGTGCCT-ATTATAGCCGAACCTATTCCAAAT
*
92350743 CGCACACTTAGTG-CTATTTATAGCCGAACCTATTTCAAAT
1 CGCACACTTAGTGCCTA-TTATAGCCGAACCTATTCCAAAT
92350783 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
92350798 GAACATAGTC
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 44 0.92
41 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (40 bp):
CGCACACTTAGTGCCTATTATAGCCGAACCTATTCCAAAT
Found at i:92363609 original size:101 final size:101
Alignment explanation
Indices: 92363465--92363651 Score: 295
Period size: 101 Copynumber: 1.9 Consensus size: 101
92363455 GCCCTTCCAT
* * * * * *
92363465 GGTCTTATAGTCGTAGTGCCATAACCTAGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTA
1 GGTCTTATAGTCATAGTACCATAACCCAATTACGGTCTGATCATCAGAATGCCATAGCCCAACTA
92363530 TAGTCTTACATATAAACACTGCCATGGTCTAACCAC
66 TAGTCTTACATATAAACACTGCCATGGTCTAACCAC
92363566 GGTCTTAT-GTCCATAGTACCATAACCCAATTACGGTCTGATCATCAGAATGCCATAGCCCAACT
1 GGTCTTATAGT-CATAGTACCATAACCCAATTACGGTCTGATCATCAGAATGCCATAGCCCAACT
*
92363630 ATAGTCTTACATATAAATACTG
65 ATAGTCTTACATATAAACACTG
92363652 TAACAGCCCA
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
100 2 0.03
101 76 0.97
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (101 bp):
GGTCTTATAGTCATAGTACCATAACCCAATTACGGTCTGATCATCAGAATGCCATAGCCCAACTA
TAGTCTTACATATAAACACTGCCATGGTCTAACCAC
Found at i:92367403 original size:42 final size:42
Alignment explanation
Indices: 92367356--92367499 Score: 132
Period size: 42 Copynumber: 3.4 Consensus size: 42
92367346 ATCTCGTACA
* *
92367356 ATGCCAATGTCCCAGACGTCGTCTTACATGTAATCAATATTG
1 ATGCCAATGTCCCAGACGTAGTCTTACACGTAATCAATATTG
* * *
92367398 ATGCCACTGTCCCAGACAG-AGTCTTACACGAAATC-ATATATC
1 ATGCCAATGTCCCAGAC-GTAGTCTTACACGTAATCAATAT-TG
* * * *
92367440 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATTACAA-ATCG
1 ATGCCAATGTCCCAGACGTAGTCTTACACGT-AA-T-CAATATTG
*
92367484 ATGCCAACGTCCCAGA
1 ATGCCAATGTCCCAGA
92367500 TGTGATCTTA
Statistics
Matches: 81, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
41 4 0.05
42 55 0.68
43 3 0.04
44 15 0.19
45 3 0.04
46 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTAGTCTTACACGTAATCAATATTG
Found at i:92370518 original size:13 final size:13
Alignment explanation
Indices: 92370495--92370534 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
92370485 GGAGTAATCG
*
92370495 CACATGGGCGTGT
1 CACACGGGCGTGT
*
92370508 CATACGGGCGTGT
1 CACACGGGCGTGT
92370521 CACACGGGCGTGT
1 CACACGGGCGTGT
92370534 C
1 C
92370535 CCTGCCGATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.15, C:0.28, G:0.38, T:0.20
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:92379710 original size:13 final size:13
Alignment explanation
Indices: 92379692--92379718 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
92379682 GGAGTAATCG
92379692 CACACGGGCGTGT
1 CACACGGGCGTGT
92379705 CACACGGGCGTGT
1 CACACGGGCGTGT
92379718 C
1 C
92379719 CCTGCTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:92380549 original size:18 final size:18
Alignment explanation
Indices: 92380522--92380562 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
92380512 CTGTGCATCC
*
92380522 TTAG-TTTAGTTAGTAGT
1 TTAGATTTAGTTAATAGT
92380539 TTAGATTTAGTTAATAGT
1 TTAGATTTAGTTAATAGT
92380557 TTAGAT
1 TTAGAT
92380563 AAACAAATCC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (18 bp):
TTAGATTTAGTTAATAGT
Found at i:92380652 original size:47 final size:47
Alignment explanation
Indices: 92380583--92380678 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
92380573 TTAATTTTTA
92380583 GGCTAGATAATAAAAAGAAAGTAATTACTAGTACTCTTGGTTCCTTT
1 GGCTAGATAATAAAAAGAAAGTAATTACTAGTACTCTTGGTTCCTTT
92380630 GGCTAGATAATAAAAAGAAAGTAATTACTAGTACTCTTGGTTCCTTT
1 GGCTAGATAATAAAAAGAAAGTAATTACTAGTACTCTTGGTTCCTTT
92380677 GG
1 GG
92380679 GTTCAACAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (47 bp):
GGCTAGATAATAAAAAGAAAGTAATTACTAGTACTCTTGGTTCCTTT
Found at i:92387548 original size:18 final size:20
Alignment explanation
Indices: 92387512--92387558 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
92387502 AGTTGTAAAT
92387512 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
92387532 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
92387551 ATGATATA
1 AT-ATATA
92387559 ACCTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:92387988 original size:50 final size:50
Alignment explanation
Indices: 92387913--92388301 Score: 349
Period size: 50 Copynumber: 7.7 Consensus size: 50
92387903 GTGAGTCACG
* *
92387913 TGTGTAGTACTAAGTGTAGGCTACTACGTGTGCCAGATTGATAGGTCTCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCTCA
* * * **
92387963 TGTGTAGTACTAAGTGCAGGTTACTATGTGTACCCG-TT-A-ACTTCAATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTC--TCA
* ** * * * *
92388012 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATGGTTAAGTCAT-G
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTC-TCA
* *
92388064 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCTCA
* * * * * * * * *
92388114 TGTGTAGTACTAAGTGAAGGATACTATGCGTACCCG-TTAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCTCA
* * * *
92388165 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTC-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCTCA
**
92388214 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGAA
1 -TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCTCA
* * **
92388265 TGTGTAGTACGAAGTGCAGGCTGCTACGCATACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
92388302 GAGGTTCGGT
Statistics
Matches: 268, Mismatches: 58, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
47 3 0.01
48 1 0.00
49 10 0.04
50 180 0.67
51 67 0.25
52 2 0.01
53 2 0.01
54 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCTCA
Found at i:92388089 original size:101 final size:101
Alignment explanation
Indices: 92387908--92388292 Score: 300
Period size: 101 Copynumber: 3.8 Consensus size: 101
92387898 TTGTTGTGAG
* * *
92387908 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTGCCAGATTGATAGGTCTCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTCTCATGTGTAGTAC
* * *
92387973 TAAGTGCAGGTTACTATGTGTACCCGTTAACTTCAA
66 TAAGTACAGGCTACTACGTGTACCCGTTAACTTCAA
** * *
92388009 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATGGTTAAGTCAT-GTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTC-TCATGTGTAGTA
* * *
92388073 CTAAGTACAGGCTACTACGTGTACCAGATTGA--T-AGG
65 CTAAGTACAGGCTACTACGTGTACCCG-TTAACTTCA-A
* * * * * * * ** ** *
92388109 TCGCATGTGTAGTACTAAGTGAAGGATACTATGCGTACCCG-TTAACTTCGATCACATGTGTAGT
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGA-TAAG-TCTCATGTGTAGT
* * * * **
92388173 ACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTT-AA
64 ACTAAGTACAGGCTACTACGTGTACCCGTTAACTTCAA
* * * **
92388209 GTC-CAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGAATGTGTAGT
1 -TCAC-GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTCTCATGTGTAGT
* * *
92388273 ACGAAGTGCAGGCTGCTACG
64 ACTAAGTACAGGCTACTACG
92388293 CATACCAGAG
Statistics
Matches: 226, Mismatches: 47, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
99 2 0.01
100 66 0.29
101 151 0.67
102 7 0.03
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTCTCATGTGTAGTAC
TAAGTACAGGCTACTACGTGTACCCGTTAACTTCAA
Found at i:92388180 original size:151 final size:150
Alignment explanation
Indices: 92387906--92388280 Score: 606
Period size: 151 Copynumber: 2.5 Consensus size: 150
92387896 ATTTGTTGTG
* * *
92387906 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTGCCAGATTGATAGGTCTCATGTGTAGT
1 AGTCA-GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * * *
92387971 ACTAAGTGCAGGTTACTATGTGTACCCGTTAACTTCAATCACGTGTGTAGTACTAAGTGTAGGCT
65 ACTAAGTGAAGGATACTATGCGTACCCGTTAACTTCAATCACATGTGTAGTACTAAGTGCAGGCT
*
92388036 ACTACGTGTATTAGATGGTTA
130 ACTACGTGTATCAGATGGTTA
*
92388057 AGTCATGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCA-GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
92388122 ACTAAGTGAAGGATACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCT
65 ACTAAGTGAAGGATACTATGCGTACCCGTTAACTTCAATCACATGTGTAGTACTAAGTGCAGGCT
92388187 ACTACGTGTATCAGATGGTTA
130 ACTACGTGTATCAGATGGTTA
*
92388208 AGTCCAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGAATGTGTAGT
1 AGT-CAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
92388273 ACGAAGTG
65 ACTAAGTG
92388281 CAGGCTGCTA
Statistics
Matches: 208, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
151 206 0.99
152 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (150 bp):
AGTCAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
CTAAGTGAAGGATACTATGCGTACCCGTTAACTTCAATCACATGTGTAGTACTAAGTGCAGGCTA
CTACGTGTATCAGATGGTTA
Found at i:92388501 original size:16 final size:16
Alignment explanation
Indices: 92388480--92388511 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92388470 AGAATGGAGT
92388480 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
92388496 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
92388512 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:92391202 original size:53 final size:53
Alignment explanation
Indices: 92391019--92391272 Score: 259
Period size: 55 Copynumber: 4.8 Consensus size: 53
92391009 ATTAGGGTTT
* *
92391019 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCATAAGGC
* * * * * *
92391074 AAGGAAATCGTGTAAGACCATGCCAAGACATGGAATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGG-C
* * *
92391130 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
92391182 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * * *
92391230 AAGGATACCACGTACGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
92391273 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 26, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
48 39 0.23
51 2 0.01
52 4 0.02
53 45 0.27
54 8 0.05
55 67 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:92391363 original size:23 final size:24
Alignment explanation
Indices: 92391337--92391381 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
92391327 AAGGTAAGGT
*
92391337 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
92391360 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
92391382 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:92394945 original size:93 final size:93
Alignment explanation
Indices: 92394786--92394956 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
92394776 ACCCATAAGT
***
92394786 GAACTCAGACTCAACTCAACGAGCTCGGGTGTTCAAATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCAAATCCATAAGTGAACTCAGACTCAACTCAA
92394851 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * ** * *
92394879 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTTAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCAAATCCATAAGTGAACTCAGACTCAACTCAA
*
92394944 CGAGTTCGGATGC
66 CGAGCTCGGATGC
92394957 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCAAATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:92394946 original size:46 final size:44
Alignment explanation
Indices: 92394778--92394953 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 44
92394768 TGTAACCCAC
** *
92394778 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCAAAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-GGAATTC-CAT
*
92394824 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGAATTCC-A--T
* *** * *
92394870 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGA-ATTC-CAT
* * *
92394917 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
92394954 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 67 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGAATTCCAT
Found at i:92401704 original size:53 final size:53
Alignment explanation
Indices: 92401521--92401774 Score: 250
Period size: 55 Copynumber: 4.8 Consensus size: 53
92401511 ATTAGGGTTT
* * * *
92401521 AAGGATACCATATAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTCATAAGGC
* * * * *
92401576 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGG-C
* * * *
92401632 AATG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
92401684 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
92401732 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
92401775 GTACTCGGGT
Statistics
Matches: 168, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
48 40 0.24
51 2 0.01
52 3 0.02
53 45 0.27
54 8 0.05
55 67 0.40
56 3 0.02
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:92401727 original size:108 final size:110
Alignment explanation
Indices: 92401528--92401728 Score: 316
Period size: 108 Copynumber: 1.8 Consensus size: 110
92401518 TTTAAGGATA
* *
92401528 CCATATAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTATAAGGCAAGGAAATCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
*
92401593 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAATGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAATGTC
* * * *
92401638 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-GTTCATAAGGCAAGGATACCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
*
92401701 CCATGTCAAGACATGGCAATGGTAAGTT
66 CCATGTCAAGACATGGCAATGATAAGTT
92401729 CAAAAGGATA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
108 51 0.61
109 7 0.08
110 25 0.30
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATATAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAATGTC
Found at i:92401865 original size:23 final size:24
Alignment explanation
Indices: 92401839--92401883 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
92401829 AAGGTAAGGT
*
92401839 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
92401862 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
92401884 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:92405910 original size:28 final size:29
Alignment explanation
Indices: 92405842--92405970 Score: 104
Period size: 29 Copynumber: 4.5 Consensus size: 29
92405832 CATGAGATTG
* * *
92405842 GCACTAAGTGTGCGGGTTTAAATTGTTCA
1 GCACTAAGTGTGCGAGTTTAAATTATTAA
*
92405871 GCACTAAGTGTGCGAGTTT-GATTA-TATA
1 GCACTAAGTGTGCGAGTTTAAATTATTA-A
* * * *
92405899 GCACTAAGTGTGTGAGTTTAAAGTA-CATG
1 GCACTAAGTGTGCGAGTTTAAATTATTA-A
* * *
92405928 GCACTAAGTGTGCGCGGTT-GATTATTAA
1 GCACTAAGTGTGCGAGTTTAAATTATTAA
*
92405956 GCACTATGTGTGCGA
1 GCACTAAGTGTGCGA
92405971 ACCCCATATA
Statistics
Matches: 79, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
27 1 0.01
28 38 0.48
29 40 0.51
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTATTAA
Found at i:92406189 original size:174 final size:174
Alignment explanation
Indices: 92405899--92406226 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
92405889 TGATTATATA
* * * *
92405899 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
* *
92405964 TGTGCGAACCCCATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
92406029 TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGTATG
131 TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGTATG
*
92406073 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
92406138 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
*
92406203 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGAAAAAGGTAAGT
92406227 ACCTTGGGTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGTATG
Found at i:92408306 original size:46 final size:46
Alignment explanation
Indices: 92408182--92408309 Score: 121
Period size: 46 Copynumber: 2.7 Consensus size: 46
92408172 GGGTTATTAT
* *
92408182 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATCGAGACAA
* * * ** * * **
92408230 GAGCTACTGTAAGACATGTTTTAGATATGCATCGACCTCGAGACGT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGACAA
* *
92408276 TATCCAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCG
92408310 GCTACAAGAT
Statistics
Matches: 61, Mismatches: 19, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
46 39 0.64
47 10 0.16
48 12 0.20
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGACAA
Found at i:92419051 original size:47 final size:47
Alignment explanation
Indices: 92418990--92419146 Score: 153
Period size: 47 Copynumber: 3.4 Consensus size: 47
92418980 GAATGCCCGT
92418990 ACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGA
1 ACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGA
* * * * *
92419037 ACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCTGA
* * * *
92419083 ACTCGTTGAGTTGAGTCCTAGTTAGTGAAATGTAAGTAGGCATCTGA
1 ACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGA
*
92419130 ACTTGTTGAGTTGAGTC
1 ACTCGTTGAGTTGAGTC
92419147 TAAGTTCACT
Statistics
Matches: 86, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 3 0.03
46 25 0.29
47 43 0.50
48 3 0.03
50 4 0.05
51 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (47 bp):
ACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGA
Found at i:92419094 original size:93 final size:93
Alignment explanation
Indices: 92418935--92419200 Score: 379
Period size: 93 Copynumber: 2.9 Consensus size: 93
92418925 AGGATATTTG
* * * * * *
92418935 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCTCTTATGGATGCGAATGCCCGTACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
92419000 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
*
92419028 GGCATCTGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* * *
92419093 TTGAGTCCTAGTTAGTGAAATGTAAGTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* ** *
92419121 GGCATCTGAACTTGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACGTCCGAGCTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
92419186 TCGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
92419201 CTTATGGGCG
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 153 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (93 bp):
GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:92419097 original size:46 final size:46
Alignment explanation
Indices: 92418939--92419207 Score: 190
Period size: 46 Copynumber: 5.8 Consensus size: 46
92418929 TATTTGGGCA
* * *
92418939 TCCGAACTCGTTGAGTTGAGTTCGAGTTCTCTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
92418985 CCCGTACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
92419030 CATCTGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * *
92419078 TCCGAACTCGTTGAGTTGAGTCCTAGTT-AGTGAAATGTAAG-TAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
* * **
92419125 TCTGAACTTGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
92419171 TCCGAGCTCGTTGAGTCGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92419208 GCGGGTTAGA
Statistics
Matches: 168, Mismatches: 41, Indels: 28
0.71 0.17 0.12
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
45 5 0.03
46 89 0.53
47 56 0.33
48 5 0.03
50 4 0.02
51 3 0.02
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:92427158 original size:43 final size:43
Alignment explanation
Indices: 92427097--92427178 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
92427087 AAATTTGATC
92427097 TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCTTCGATT
1 TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCTTCGATT
* * * *
92427140 TGAGATTTCGTGTAAGACCTTGTTTGGGACAGAGGCTTC
1 TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCTTC
92427179 AACATCGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (43 bp):
TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCTTCGATT
Found at i:92439719 original size:46 final size:46
Alignment explanation
Indices: 92439525--92439744 Score: 176
Period size: 46 Copynumber: 4.7 Consensus size: 46
92439515 TTTGTAAGCT
** * * ** *
92439525 AGTGTAAGACATGTCTAAGACATGCATCAGCCACATCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAACTACAAGACGAGAGCC
** *
92439571 AGTGTAAGACCATGTCTGGGACATGGCATCAAC-ATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACTA-CAAGACGAGAGCC
* ** *
92439619 AGTGTAAGACATGTCTGAGACATGCATCGGTCT-CGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-AACTACAAGACG-AGAGCC
* * * *
92439665 AGTATAAGACATGTCTGGGACATGCATCAACTACAAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAACTACAAGACGAGAGCC
* *
92439711 AGTGTAAGACCATATCTGGGACACGACATCAACT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCAACT
92439745 TGAGATGTGA
Statistics
Matches: 140, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
45 3 0.02
46 65 0.46
47 41 0.29
48 31 0.22
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACTACAAGACGAGAGCC
Found at i:92439772 original size:140 final size:141
Alignment explanation
Indices: 92439518--92439788 Score: 332
Period size: 140 Copynumber: 1.9 Consensus size: 141
92439508 TCATTTGTTT
* * * *
92439518 GTAAGCTAGTGTAAGACATGTCTAAGACATGCATCAGCCACATCATGAGAGCCAGTGTAAGACCA
1 GTAAGCCAGTATAAGACATGTCTAAGACATGCATCAACCACAACATGAGAGCCAGTGTAAGACCA
* * * * * * *
92439583 TGTCTGGGACATGGCATCAACATTGAGACGAGAGCTAGTGTAAGACATGTCT-GAGACAT-GCAT
66 TATCTGGGACACGACATCAACATTGAGACGAGAGCCAATATAAAACATGTCTAG-GACATGGCAT
92439646 CGGTCTCGAGAC
130 CGGTCTCGAGAC
** * * * *
92439658 GTAAGCCAGTATAAGACATGTCTGGGACATGCATCAACTACAAGATGATAGTCAGTGTAAGACCA
1 GTAAGCCAGTATAAGACATGTCTAAGACATGCATCAACCACAACATGAGAGCCAGTGTAAGACCA
* *
92439723 TATCTGGGACACGACATCAAC-TTGAGATGTGAGCCAATATAAAACCATGTCTAGGACATGGCAT
66 TATCTGGGACACGACATCAACATTGAGACGAGAGCCAATATAAAA-CATGTCTAGGACATGGCAT
92439787 CG
130 CG
92439789 ACACTTTACC
Statistics
Matches: 109, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
139 17 0.16
140 85 0.78
141 7 0.06
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (141 bp):
GTAAGCCAGTATAAGACATGTCTAAGACATGCATCAACCACAACATGAGAGCCAGTGTAAGACCA
TATCTGGGACACGACATCAACATTGAGACGAGAGCCAATATAAAACATGTCTAGGACATGGCATC
GGTCTCGAGAC
Found at i:92443364 original size:46 final size:48
Alignment explanation
Indices: 92443253--92443573 Score: 227
Period size: 46 Copynumber: 6.8 Consensus size: 48
92443243 GATTATTATC
* ** * * *
92443253 AGCCAATGTAAGACCATGTCTGGGACATGGCATTAGCATTGAGA-GGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGCA
* *
92443300 GAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGCA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGCA
* *
92443347 AGCCAGTGTAAGA-CATGTCTGGGACAT-CCATC-GACTACGAGATG--
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGCA
* * * * ** * * *
92443391 TGTCAATGTAAGACCATGTTTGGGACATGGCATTAGCAC-AGATATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATG-CA
* *
92443440 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTC-A-ATGACGA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-C-A
* * * * * *
92443489 TAGTCAGTGTAAGACCATGTTTGGGACATGACATC-GACTTGAGATACGA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGC-A
92443538 A-CCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
92443574 ATTCTACCCC
Statistics
Matches: 213, Mismatches: 45, Indels: 30
0.74 0.16 0.10
Matches are distributed among these distances:
44 10 0.05
45 16 0.08
46 55 0.26
47 45 0.21
48 20 0.09
49 36 0.17
50 31 0.15
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGCA
Found at i:92443564 original size:96 final size:94
Alignment explanation
Indices: 92443253--92443573 Score: 291
Period size: 96 Copynumber: 3.4 Consensus size: 94
92443243 GATTATTATC
* ** * * * *
92443253 AGCCAATGTAAGACCATGTCTGGGACATGGCATTAGCAT-TGAGAGGAGAGCTAGTGTAAGA-CA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTACGAGATGAG-TC-AGTGTAAGACCA
* *
92443316 TGTTTGGGACATGCATCGGCCTCGAGATGC-A
64 TGTTTGGGACATGCATC-GACTAGAGATGCGA
* * * *
92443347 AGCCAGTGTAAGA-CATGTCTGGGACAT-CCATC-GACTACGAGATGTGTCAATGTAAGACCATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTACGAGATGAGTCAGTGTAAGACCATG
* * *
92443409 TTTGGGACATGGCATTAGCAC-AGATATGTGA
66 TTTGGGACAT-GCA-TCG-ACTAGAGATGCGA
* * *
92443440 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATGACGAT-AGTCAGTGTAAGAC
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT--ACGA-GATGAGTCAGTGTAAGAC
* *
92443504 CATGTTTGGGACATGACATCGACTTGAGATACGA
62 CATGTTTGGGACATG-CATCGACTAGAGATGCGA
92443538 A-CCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
92443574 ATTCTACCCC
Statistics
Matches: 183, Mismatches: 29, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
90 8 0.04
91 17 0.09
92 18 0.10
93 17 0.09
94 24 0.13
95 14 0.08
96 36 0.20
97 6 0.03
98 9 0.05
99 31 0.17
100 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTACGAGATGAGTCAGTGTAAGACCATG
TTTGGGACATGCATCGACTAGAGATGCGA
Found at i:92444727 original size:21 final size:22
Alignment explanation
Indices: 92444688--92444728 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
92444678 TCGAATTGGT
*
92444688 CACACGGGCGTGTTGCCCCTTC
1 CACACGGGCGCGTTGCCCCTTC
92444710 CACACGGGCGCG-TGCCCCT
1 CACACGGGCGCGTTGCCCCT
92444729 GTGTCTAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.44, G:0.29, T:0.17
Consensus pattern (22 bp):
CACACGGGCGCGTTGCCCCTTC
Found at i:92460137 original size:14 final size:15
Alignment explanation
Indices: 92460118--92460146 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
92460108 GGTGGAAAAG
92460118 TATTTTTGAA-GTGT
1 TATTTTTGAATGTGT
92460132 TATTTTTGAATGTGT
1 TATTTTTGAATGTGT
92460147 GGTCTACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (15 bp):
TATTTTTGAATGTGT
Found at i:92461825 original size:36 final size:36
Alignment explanation
Indices: 92461778--92461847 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
92461768 ATGTTGAGTC
92461778 TATTAGGGTCGTCAATAAGAGTGAATAAACGGTTGT
1 TATTAGGGTCGTCAATAAGAGTGAATAAACGGTTGT
*
92461814 TATTAGGGTCGTCAATAAGAGTGAATAAATGGTT
1 TATTAGGGTCGTCAATAAGAGTGAATAAACGGTT
92461848 TAAGGATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (36 bp):
TATTAGGGTCGTCAATAAGAGTGAATAAACGGTTGT
Found at i:92469313 original size:40 final size:40
Alignment explanation
Indices: 92469229--92469453 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
92469219 TTGAATGATG
* * * *
92469229 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
92469269 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92469309 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
92469348 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
92469388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
92469429 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92469454 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 119 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:92469475 original size:119 final size:119
Alignment explanation
Indices: 92469236--92469486 Score: 260
Period size: 119 Copynumber: 2.1 Consensus size: 119
92469226 ATGTCCGGGC
* *
92469236 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCAAG
* ** * *
92469301 ATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCTGGGT
66 ATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAATCTCGGT
* * * **
92469355 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCA
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCA
* * * *
92469418 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATC-CGGT
64 AGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAATCTCGGT
* *
92469474 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
92469487 TACGTGATTT
Statistics
Matches: 109, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 76 0.70
120 30 0.28
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCAAG
ATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAATCTCGGT
Found at i:92472336 original size:47 final size:47
Alignment explanation
Indices: 92472219--92472456 Score: 370
Period size: 47 Copynumber: 5.1 Consensus size: 47
92472209 CCCTTCGGGA
* * * * * * *
92472219 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
92472266 C-CGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92472312 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92472359 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92472406 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92472453 CTTA
1 CTTA
92472457 CTATCATTTC
Statistics
Matches: 176, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 37 0.21
47 139 0.79
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:92472656 original size:47 final size:47
Alignment explanation
Indices: 92472620--92473044 Score: 724
Period size: 47 Copynumber: 9.0 Consensus size: 47
92472610 CTCGGCCCCG
92472620 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
92472667 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
92472714 TTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
92472761 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
92472808 TTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
92472855 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTG
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
92472902 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
92472949 TCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
92472998 TCACACATATACACTTTCACATTCATCTCATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
92473045 CTATCATTTC
Statistics
Matches: 360, Mismatches: 16, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 314 0.87
49 46 0.13
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.33
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:92476525 original size:41 final size:40
Alignment explanation
Indices: 92476429--92476637 Score: 149
Period size: 40 Copynumber: 5.2 Consensus size: 40
92476419 TAGGCACGAG
* * * * *
92476429 AGCCCGAATACACGTCACCAGCATGATTGCTCTTCGG-A-TC
1 AGCCCGGATACA--TCACTAGCACGAATGCTCTTCGGAACTT
* *
92476469 AGCACGGATATATCACTAGCACGAATGCTCTTCGGAAACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGG-AACTT
* *
92476510 AGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTT
** * * * *
92476550 AGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTT
1 AGCCCGGATACA-TCACTAGCACGAATGCTCTTCGGAACTT
* ** * *
92476590 AGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTT
1 AGCCCGGATA-CATCAC-TAGCACGAATGCTCTTCGGAACTT
92476630 AGCCCGGA
1 AGCCCGGA
92476638 CATCATTCGA
Statistics
Matches: 134, Mismatches: 29, Indels: 12
0.77 0.17 0.07
Matches are distributed among these distances:
38 20 0.15
40 64 0.48
41 50 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
AGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTT
Found at i:92476558 original size:81 final size:80
Alignment explanation
Indices: 92476429--92476637 Score: 194
Period size: 81 Copynumber: 2.6 Consensus size: 80
92476419 TAGGCACGAG
* * * * * *
92476429 AGCCCGAATACACGTCACCAGCATGATTGCTCTTC-GGA-TCAGCACGGATATA-TCACTAGCAC
1 AGCCCGGATACA--TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAGTAACTAGCAC
*
92476491 GAATGCTCTTCGGAAACTT
64 CAATGC-CTTCGG-AACTT
* *
92476510 AGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCA
1 AGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAGTAACTAGCACCA
*
92476575 ATGCCTTCGGATCTT
66 ATGCCTTCGGAACTT
* ** * *
92476590 AGTCCGGATATGGTCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 AGCCCGGATA-CATCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
92476638 CATCATTCGA
Statistics
Matches: 108, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
79 19 0.18
80 35 0.32
81 36 0.33
82 18 0.17
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAGTAACTAGCACCA
ATGCCTTCGGAACTT
Found at i:92476982 original size:30 final size:30
Alignment explanation
Indices: 92476942--92477022 Score: 117
Period size: 30 Copynumber: 2.7 Consensus size: 30
92476932 TTAATAATTC
*
92476942 AACCACGCACACTTAGTGCCATGTACTTTAA
1 AACC-CGCACACTTAGTGCCATGCACTTTAA
* *
92476973 AACTCGCACACTTAGTGCCATGCACTTTCA
1 AACCCGCACACTTAGTGCCATGCACTTTAA
*
92477003 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
92477023 ATCTCACAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 42 0.93
31 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.23
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGCACTTTAA
Found at i:92477057 original size:43 final size:43
Alignment explanation
Indices: 92477004--92477106 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
92476994 GCACTTTCAA
92477004 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
92477047 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
92477090 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
92477107 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:92479231 original size:47 final size:47
Alignment explanation
Indices: 92479114--92479351 Score: 361
Period size: 47 Copynumber: 5.1 Consensus size: 47
92479104 CCCTTCGGGA
* * * * * * *
92479114 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
92479161 C-CGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92479207 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92479254 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92479301 CTTATCACACATATACACATTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92479348 CTTA
1 CTTA
92479352 CTATCATTTC
Statistics
Matches: 175, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 37 0.21
47 138 0.79
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:92479634 original size:14 final size:14
Alignment explanation
Indices: 92479615--92479644 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
92479605 GGCCTTATTA
92479615 CATATATACACTTT
1 CATATATACACTTT
92479629 CATATATACACTTT
1 CATATATACACTTT
92479643 CA
1 CA
92479645 CATTCATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.23, G:0.00, T:0.40
Consensus pattern (14 bp):
CATATATACACTTT
Found at i:92479639 original size:61 final size:61
Alignment explanation
Indices: 92479568--92479691 Score: 212
Period size: 61 Copynumber: 2.0 Consensus size: 61
92479558 GGCCTTATCA
* *
92479568 CATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATTACATATATACACTTT
1 CATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACAAATATACACTTT
* *
92479629 CATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAAATATACACTTT
1 CATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACAAATATACACTTT
92479690 CA
1 CA
92479692 CATTCATCAC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.35
Consensus pattern (61 bp):
CATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACAAATATACACTTT
Found at i:92479813 original size:202 final size:190
Alignment explanation
Indices: 92479518--92479956 Score: 684
Period size: 202 Copynumber: 2.2 Consensus size: 190
92479508 CTCGGCCCCG
92479518 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
92479583 ACATTCATCACATCGACCATTAGGCCTTATTACATATATACACTTTCATATATACACTTTCACAT
66 ACATTCATCACATCGACCATTAGGCCTTA-T-C------ACA----C--ATATACACTTTCACAT
92479648 TCATCACATCGGCTATTAGGCCTTATCACA-A-ATATACACTTTCACATTCATCACATCGGCCAT
117 TCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
*
92479711 TAGGCCTTA
182 TAAGCCTTA
*
92479720 TTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
* *
92479785 ACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCT
66 ACATTCATCACATCGACCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCT
*
92479850 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAAGCCTTA
131 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
*
92479910 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
92479957 CTATCATTTC
Statistics
Matches: 228, Mismatches: 7, Indels: 16
0.91 0.03 0.06
Matches are distributed among these distances:
188 46 0.20
189 1 0.00
190 85 0.37
194 3 0.01
200 1 0.00
201 1 0.00
202 91 0.40
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (190 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGACCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCT
ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
Found at i:92479955 original size:47 final size:47
Alignment explanation
Indices: 92479467--92479956 Score: 638
Period size: 47 Copynumber: 10.1 Consensus size: 47
92479457 CCCTTCGGGA
* * * ** * * *
92479467 CTTATCACATTTATGCACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
92479514 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92479561 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92479608 CTTATTACATATATACACTTTCATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTC------ACA--TT--C----ATCACATCGGCCATTAGGC
*
92479669 CTTATCACAAATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92479716 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92479763 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92479810 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92479857 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92479906 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92479953 CTTA
1 CTTA
92479957 CTATCATTTC
Statistics
Matches: 396, Mismatches: 31, Indels: 32
0.86 0.07 0.07
Matches are distributed among these distances:
47 302 0.76
49 45 0.11
51 1 0.00
53 5 0.01
55 5 0.01
57 1 0.00
61 37 0.09
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:92499375 original size:24 final size:25
Alignment explanation
Indices: 92499347--92499394 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
92499337 TGATTAAATT
92499347 TTAATTAAATAAATATT-AATTAAG
1 TTAATTAAATAAATATTAAATTAAG
* *
92499371 TTAATTAAATTATTATTAAATTAA
1 TTAATTAAATAAATATTAAATTAA
92499395 TCAATGTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
TTAATTAAATAAATATTAAATTAAG
Found at i:92499379 original size:20 final size:19
Alignment explanation
Indices: 92499347--92499395 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
92499337 TGATTAAATT
*
92499347 TTAATTAAATAAA-TATTAA
1 TTAATTAATTAAATTATT-A
92499366 TTAAGTTAATTAAATTATTA
1 TTAA-TTAATTAAATTATTA
92499386 TTAAATTAAT
1 TT-AATTAAT
92499396 CAATGTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.15
20 16 0.62
21 6 0.23
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
TTAATTAATTAAATTATTA
Found at i:92502949 original size:31 final size:31
Alignment explanation
Indices: 92502906--92502977 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
92502896 TTAATTTAAA
* * * *
92502906 GGGATGAGGGTTGTTGTCA-TGGAGCACTTAG
1 GGGAGGAGGGTTGGTGTCAGTCGA-CACCTAG
*
92502937 GGGTGGAGGGTTGGTGTCAGTCGACACCTAG
1 GGGAGGAGGGTTGGTGTCAGTCGACACCTAG
92502968 GGGAGGAGGG
1 GGGAGGAGGG
92502978 CTGGGGAGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 31 0.91
32 3 0.09
ACGTcount: A:0.18, C:0.11, G:0.49, T:0.22
Consensus pattern (31 bp):
GGGAGGAGGGTTGGTGTCAGTCGACACCTAG
Found at i:92508556 original size:22 final size:22
Alignment explanation
Indices: 92508531--92508593 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
92508521 GTGGGAATGT
92508531 CACACAGGCGTGTTGCCCCTCC
1 CACACAGGCGTGTTGCCCCTCC
* *
92508553 CACACGGGCGTTTTGCCCCTCC
1 CACACAGGCGTGTTGCCCCTCC
*
92508575 CACATAGGCGTG-TGCCCCT
1 CACACAGGCGTGTTGCCCCT
92508594 ATGTTAAGAG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 7 0.19
22 29 0.81
ACGTcount: A:0.13, C:0.43, G:0.24, T:0.21
Consensus pattern (22 bp):
CACACAGGCGTGTTGCCCCTCC
Found at i:92517331 original size:42 final size:43
Alignment explanation
Indices: 92517285--92517377 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
92517275 CAGTTGATAA
92517285 ATGATCAATTTG-AAATGAGATGTAGATACTAGCAAGTAAACT
1 ATGATCAATTTGAAAATGAGATGTAGATACTAGCAAGTAAACT
* * * *
92517327 ATGATCAATTTGAAAATGAGTTGTTGATACTAGCTAGTTAACT
1 ATGATCAATTTGAAAATGAGATGTAGATACTAGCAAGTAAACT
*
92517370 ATAATCAA
1 ATGATCAA
92517378 ATGAATTATA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 12 0.27
43 33 0.73
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (43 bp):
ATGATCAATTTGAAAATGAGATGTAGATACTAGCAAGTAAACT
Found at i:92523153 original size:18 final size:18
Alignment explanation
Indices: 92523127--92523197 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
92523117 AATTGATCGG
*
92523127 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
92523145 TTATTCAGTAAAAATCAA
1 TTATTCAGTAACAGTCAA
* * *
92523163 ATATACAGTAAC-GATTATA
1 TTATTCAGTAACAG-TCA-A
92523182 TTATTCAGTAACAGTC
1 TTATTCAGTAACAGTC
92523198 GATCTTTCCA
Statistics
Matches: 39, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
18 26 0.67
19 12 0.31
20 1 0.03
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.32
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:92523381 original size:47 final size:47
Alignment explanation
Indices: 92523322--92523424 Score: 170
Period size: 47 Copynumber: 2.2 Consensus size: 47
92523312 CAGTAACAGT
* * *
92523322 AACAATAACAGTACAGTACACGGAGTACCTCATCGGAACAAATCCGG
1 AACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATCCGA
*
92523369 AACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
1 AACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATCCGA
92523416 AACAGTAAC
1 AACAGTAAC
92523425 TGTAACGGTA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.42, C:0.25, G:0.18, T:0.15
Consensus pattern (47 bp):
AACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATCCGA
Found at i:92523665 original size:19 final size:20
Alignment explanation
Indices: 92523618--92523665 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
92523608 CACTTTCTAG
*
92523618 TTTTCAATTAATTCATATTT
1 TTTTCAATTAACTCATATTT
*
92523638 TAATT-AATTAACT-ATATTT
1 T-TTTCAATTAACTCATATTT
92523657 TTTTCAATT
1 TTTTCAATT
92523666 CAATATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
18 2 0.09
19 11 0.48
20 8 0.35
21 2 0.09
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTTCAATTAACTCATATTT
Found at i:92527545 original size:43 final size:42
Alignment explanation
Indices: 92527497--92527621 Score: 121
Period size: 42 Copynumber: 2.9 Consensus size: 42
92527487 CCAGACGTGG
* *
92527497 TCTTACATGTAATCAAATATCGATGT-AACTGTCCCAGACAATT
1 TCTTACACGAAATCAAATA-CGATGTCAA-TGTCCCAGACAATT
* *
92527540 TCTTACACGAAATCAAATACGATGTCGATGTCCCAGAC-ATGG
1 TCTTACACGAAATCAAATACGATGTCAATGTCCCAGACAAT-T
* *
92527582 TCTTACACATAAATCATAAGT-CGATGCCAATGTCCCAGAC
1 TCTTACAC-GAAATCA-AA-TACGATGTCAATGTCCCAGAC
92527622 GTGGTCTTAC
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
41 2 0.03
42 24 0.34
43 24 0.34
44 19 0.27
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (42 bp):
TCTTACACGAAATCAAATACGATGTCAATGTCCCAGACAATT
Found at i:92527576 original size:42 final size:42
Alignment explanation
Indices: 92527484--92527637 Score: 161
Period size: 43 Copynumber: 3.6 Consensus size: 42
92527474 CAATGCCAAC
* * *
92527484 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGT-AACT
1 GTCCCAGACATGGTCTTACACGAAATCAAATA-CGATGTCAA-T
* *
92527527 GTCCCAGACAAT-TTCTTACACGAAATCAAATACGATGTCGAT
1 GTCCCAGAC-ATGGTCTTACACGAAATCAAATACGATGTCAAT
* *
92527569 GTCCCAGACATGGTCTTACACATAAATCATAAGT-CGATGCCAAT
1 GTCCCAGACATGGTCTTACAC-GAAATCA-AA-TACGATGTCAAT
*
92527613 GTCCCAGACGTGGTCTTACACGAAA
1 GTCCCAGACATGGTCTTACACGAAA
92527638 ACACATATCG
Statistics
Matches: 94, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
41 2 0.02
42 24 0.26
43 36 0.38
44 31 0.33
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATACGATGTCAAT
Found at i:92527620 original size:44 final size:41
Alignment explanation
Indices: 92527476--92527633 Score: 133
Period size: 44 Copynumber: 3.7 Consensus size: 41
92527466 AGATAGCACA
* * *
92527476 ATGCCAACGTCCCAGACGTGGTCTTACA-TGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACT-AAATC-AA-ATCG
* * *
92527519 ATG-TAACTGTCCCAGACAAT-TTCTTACACGAAATCAAATACG
1 ATGCCAA-TGTCCCAGAC-ATGGTCTTACACTAAATCAAAT-CG
* *
92527561 ATGTCGATGTCCCAGACATGGTCTTACACATAAATCATAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-TAAATCA-AA-TCG
*
92527605 ATGCCAATGTCCCAGACGTGGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
92527634 GAAAACACAT
Statistics
Matches: 93, Mismatches: 13, Indels: 17
0.76 0.11 0.14
Matches are distributed among these distances:
41 4 0.04
42 27 0.29
43 30 0.32
44 31 0.33
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACATGGTCTTACACTAAATCAAATCG
Found at i:92528510 original size:31 final size:32
Alignment explanation
Indices: 92528475--92528539 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
92528465 TGATAATTGC
92528475 CTAATTTCATACATT-TTTTATTTAATTATAA
1 CTAATTTCATACATTGTTTTATTTAATTATAA
* *
92528506 CTAATTTCATACTTTGTTTTATTTAATTTTAA
1 CTAATTTCATACATTGTTTTATTTAATTATAA
92528538 CT
1 CT
92528540 TATTAATCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 14 0.45
32 17 0.55
ACGTcount: A:0.31, C:0.11, G:0.02, T:0.57
Consensus pattern (32 bp):
CTAATTTCATACATTGTTTTATTTAATTATAA
Found at i:92528585 original size:26 final size:25
Alignment explanation
Indices: 92528534--92528585 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
92528524 TTATTTAATT
*
92528534 TTAACTTATTAATCCAATTACCAAA
1 TTAACTTATTAATCCAATTACAAAA
*
92528559 TTAACCTTATTTAATCC-ATTATAAAA
1 TTAA-CTTA-TTAATCCAATTACAAAA
92528585 T
1 T
92528586 CACATATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 4 0.17
26 12 0.52
27 7 0.30
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (25 bp):
TTAACTTATTAATCCAATTACAAAA
Found at i:92529615 original size:34 final size:34
Alignment explanation
Indices: 92529567--92529698 Score: 167
Period size: 34 Copynumber: 3.9 Consensus size: 34
92529557 GCGAATACAT
* * *
92529567 TCTGGGCCTAAGCCCATATCAATAACAGTAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
* *
92529601 TCTGGGCCTTAGCCCATTTCAGTAATAGTAACAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
* *
92529635 TCTGGGCTTTAGCCCATTTCAGTAACAGAAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
* *
92529669 TCT-GGCCTTTATCCCATTTCAGTAATAGTA
1 TCTGGGCC-TTAGCCCATTTCAGTAACAGTA
92529699 ATTAGTGCAG
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
33 3 0.04
34 81 0.96
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (34 bp):
TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
Found at i:92529685 original size:68 final size:68
Alignment explanation
Indices: 92529567--92529699 Score: 196
Period size: 68 Copynumber: 2.0 Consensus size: 68
92529557 GCGAATACAT
*
92529567 TCTGGGCCTAAGCCCATATCAATAACAGTAGCAGTCTGGGCCTTAGCCCATTTCAGTAATAGTAA
1 TCTGGGCCTAAGCCCATATCAATAACAGAAGCAGTCTGGGCCTTAGCCCATTTCAGTAATAGTAA
92529632 CAG
66 CAG
* * * * *
92529635 TCTGGGCTTTAGCCCATTTCAGTAACAGAAGCAGTCT-GGCCTTTATCCCATTTCAGTAATAGTA
1 TCTGGGCCTAAGCCCATATCAATAACAGAAGCAGTCTGGGCC-TTAGCCCATTTCAGTAATAGTA
92529699 A
65 A
92529700 TTAGTGCAGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 4 0.07
68 54 0.93
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (68 bp):
TCTGGGCCTAAGCCCATATCAATAACAGAAGCAGTCTGGGCCTTAGCCCATTTCAGTAATAGTAA
CAG
Found at i:92529743 original size:18 final size:18
Alignment explanation
Indices: 92529697--92529746 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
92529687 TCAGTAATAG
*
92529697 TAATTAGTGCAGTAACCA
1 TAATTAGTGCAGTAACAA
* * *
92529715 TCATCAATGCAGTAACAA
1 TAATTAGTGCAGTAACAA
92529733 TAATTAGTGCAGTA
1 TAATTAGTGCAGTA
92529747 TGCAAGCAGA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (18 bp):
TAATTAGTGCAGTAACAA
Found at i:92529874 original size:26 final size:26
Alignment explanation
Indices: 92529845--92529910 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
92529835 GCCAGACACA
*
92529845 CCAATATCAGTATCACAGCAAAGCTG
1 CCAATATCAGTATCACAGCAAACCTG
* *
92529871 CCAATAGCAGTATCGCAGCAAACCTG
1 CCAATATCAGTATCACAGCAAACCTG
92529897 CCAATAATCAGTAT
1 CCAAT-ATCAGTAT
92529911 AATGGCTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
26 28 0.80
27 7 0.20
ACGTcount: A:0.38, C:0.27, G:0.15, T:0.20
Consensus pattern (26 bp):
CCAATATCAGTATCACAGCAAACCTG
Found at i:92530102 original size:27 final size:25
Alignment explanation
Indices: 92530056--92530172 Score: 99
Period size: 27 Copynumber: 4.4 Consensus size: 25
92530046 GAACAAATCT
* *
92530056 GTCATTTTACCTTACCGGGGTATTATA
1 GTCATTTTACCCTA-TGGGGTATT-TA
* *
92530083 GTCATTTTACCCTACAGGGGTATTTCG
1 GTCATTTTACCCTA-TGGGGTATTT-A
* *
92530110 GTCATTCTACCTTATGGGCGTATTTA
1 GTCATTTTACCCTATGGG-GTATTTA
*
92530136 GGTTATTTTACCCTATGAGGGTATTTTA
1 -GTCATTTTACCCTATG-GGGTA-TTTA
92530164 GTCATTTTA
1 GTCATTTTA
92530173 TCACATAAGG
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
26 4 0.05
27 64 0.86
28 6 0.08
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.43
Consensus pattern (25 bp):
GTCATTTTACCCTATGGGGTATTTA
Found at i:92530168 original size:54 final size:54
Alignment explanation
Indices: 92530056--92530169 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 54
92530046 GAACAAATCT
* *
92530056 GTCATTTTACCTTACCGGGGTATTATAGTCATTTTACCCTACAGGGGTATTTCG
1 GTCATTCTACCTTACCGGGGTATTATAGTCATTTTACCCTACAGGGGTATTTCA
* * * *
92530110 GTCATTCTACCTTA-TGGGCGTATT-TAGGTTATTTTACCCTA-TGAGGGTATTTTA
1 GTCATTCTACCTTACCGGG-GTATTATA-GTCATTTTACCCTACAG-GGGTATTTCA
92530164 GTCATT
1 GTCATT
92530170 TTATCACATA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
53 6 0.12
54 45 0.88
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (54 bp):
GTCATTCTACCTTACCGGGGTATTATAGTCATTTTACCCTACAGGGGTATTTCA
Found at i:92530183 original size:27 final size:26
Alignment explanation
Indices: 92530164--92530345 Score: 247
Period size: 27 Copynumber: 6.8 Consensus size: 26
92530154 GGGTATTTTA
92530164 GTCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGC-AAATT
*
92530191 GTCATTTTATCACATGAGGGCAAAATT
1 GTCATTTTATCACATAAGGGC-AAATT
* **
92530218 GTCATTTCATCACATAAAGGTAAAATT
1 GTCATTTTATCACAT-AAGGGCAAATT
*
92530245 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGC-AAATT
*
92530272 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGC-AAATT
*
92530299 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGC-AAATT
92530326 GTCATTTTATCACATAAGGG
1 GTCATTTTATCACATAAGGG
92530346 TTCAAGTACG
Statistics
Matches: 144, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
26 4 0.03
27 137 0.95
28 3 0.02
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32
Consensus pattern (26 bp):
GTCATTTTATCACATAAGGGCAAATT
Found at i:92530267 original size:81 final size:81
Alignment explanation
Indices: 92530164--92530345 Score: 301
Period size: 81 Copynumber: 2.2 Consensus size: 81
92530154 GGGTATTTTA
* * *
92530164 GTCATTTTATCACATAAGGGCAAAATTGTCATTTTATCACATGAGGGCAAAATTGTCATTTCATC
1 GTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTCATC
* *
92530229 ACATAAAGGTAAAATT
66 ACATAAAGGCAAAATC
*
92530245 GTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATC
1 GTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTCATC
*
92530310 ACATAAGGGCAAAATC
66 ACATAAAGGCAAAATC
92530326 GTCATTTTATCACATAAGGG
1 GTCATTTTATCACATAAGGG
92530346 TTCAAGTACG
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 94 1.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32
Consensus pattern (81 bp):
GTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTCATC
ACATAAAGGCAAAATC
Found at i:92538670 original size:43 final size:42
Alignment explanation
Indices: 92538622--92538820 Score: 154
Period size: 43 Copynumber: 4.7 Consensus size: 42
92538612 ATATGATTTC
* *
92538622 GTGTAAGACCATGTCTGGGACGTTGGCATTGACTTGAGATATT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGAATTGA-ATATT
** * **
92538665 GTGTAAGATTATGTCTAGGACACTGGCATCG-ATT-AATGATTAT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGAATTGAAT-A-T-T
* ** * * *
92538708 GTGTAAGACCATGTCTGGGACATCAGCATCGTATTTAATTTT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGAATTGAATATT
* * * *
92538750 GTGTAAGACCCTGTCTGGAACAG-TGGCATCGAAATTGATTA-C
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATCG-AATTGAATATT
*
92538792 ATGTAAGACCATGTCTGGGACGTTGGCAT
1 GTGTAAGACCATGTCTGGGACGTTGGCAT
92538821 TGTACGAGCT
Statistics
Matches: 121, Mismatches: 27, Indels: 17
0.73 0.16 0.10
Matches are distributed among these distances:
40 2 0.02
41 3 0.02
42 53 0.44
43 57 0.47
44 3 0.02
45 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGAATTGAATATT
Found at i:92538819 original size:42 final size:42
Alignment explanation
Indices: 92538622--92538820 Score: 161
Period size: 42 Copynumber: 4.7 Consensus size: 42
92538612 ATATGATTTC
* * *
92538622 GTGTAAGACCATGTCTGGGACGTTGGCATTG-ACTTGAGATATT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGAAATTGA-TTA-T
** * **
92538665 GTGTAAGATTATGTCTAGGACACTGGCATCGATTAA-TGATTAT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGA--AATTGATTAT
* ** * * * *
92538708 GTGTAAGACCATGTCTGGGACATCAGCATCGTATTTAATTTT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGAAATTGATTAT
* * *
92538750 GTGTAAGACCCTGTCTGGAACAG-TGGCATCGAAATTGATTAC
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATCGAAATTGATTAT
*
92538792 ATGTAAGACCATGTCTGGGACGTTGGCAT
1 GTGTAAGACCATGTCTGGGACGTTGGCAT
92538821 TGTACGAGCT
Statistics
Matches: 119, Mismatches: 31, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
41 2 0.02
42 60 0.50
43 51 0.43
44 2 0.02
45 3 0.03
46 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGAAATTGATTAT
Found at i:92543203 original size:42 final size:43
Alignment explanation
Indices: 92543132--92543223 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 43
92543122 CCAAATATGA
* * * * * *
92543132 TCTTATACGAAAATCTTATTTCAATGCCATGTCCCAGACGTGG
1 TCTTACACGAAAATCTCATATCAACGCCATATCCCAGACATGG
*
92543175 TCTTACACG-AAATCTCATATCAACGCCATATCCCAGATATGG
1 TCTTACACGAAAATCTCATATCAACGCCATATCCCAGACATGG
92543217 TCTTACA
1 TCTTACA
92543224 TGATAACACA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 34 0.81
43 8 0.19
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (43 bp):
TCTTACACGAAAATCTCATATCAACGCCATATCCCAGACATGG
Found at i:92550637 original size:2 final size:2
Alignment explanation
Indices: 92550630--92550657 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
92550620 TATGAAAGGT
92550630 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92550658 AGTTTAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:92551348 original size:27 final size:27
Alignment explanation
Indices: 92551317--92551494 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
92551307 TAAATTGTAC
92551317 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
92551344 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
92551370 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
92551398 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
92551426 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
92551453 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
92551480 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
92551495 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:92551431 original size:82 final size:81
Alignment explanation
Indices: 92551318--92551473 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
92551308 AAATTGTACA
* *
92551318 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
92551382 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
92551399 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
92551464 TGCGAGTTGA
65 TGCGAATTGA
92551474 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:92551485 original size:82 final size:81
Alignment explanation
Indices: 92551314--92551494 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
92551304 GATTAAATTG
* *
92551314 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
92551379 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
92551395 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
92551459 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
92551477 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
92551495 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:92566794 original size:46 final size:47
Alignment explanation
Indices: 92566711--92566917 Score: 191
Period size: 47 Copynumber: 4.3 Consensus size: 47
92566701 TTGCACATAG
* **
92566711 TCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTATACGG-A
1 TCACATATCAC--ACCGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * * *
92566759 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTA
1 TCACATATCACACCGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * * *
92566806 GCACATATCACACCGATGCCATATCTCGGATATGGTCTTATACGGAA
1 TCACATATCACACCGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * * *
92566853 GCACAAATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAA
1 TCACATATCACA-----CCGATGCCATAGCCCAGATATGGTCTTATACGG-AA
*
92566906 TCACATTTCACA
1 TCACATATCACA
92566918 TGCTACCATG
Statistics
Matches: 131, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
46 28 0.21
47 53 0.40
48 11 0.08
52 28 0.21
53 11 0.08
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (47 bp):
TCACATATCACACCGATGCCATAGCCCAGATATGGTCTTATACGGAA
Found at i:92569261 original size:31 final size:31
Alignment explanation
Indices: 92569225--92569283 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
92569215 CAGGCCAGTA
92569225 ACTTAAAT-AAAAACTT-TCAAATAATTTAGTG
1 ACTTAAATGAAAAA-TTCT-AAATAATTTAGTG
92569256 ACTTAAATGAAAAATTCTAAATAATTTA
1 ACTTAAATGAAAAATTCTAAATAATTTA
92569284 ATGATTGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
31 20 0.77
32 6 0.23
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.36
Consensus pattern (31 bp):
ACTTAAATGAAAAATTCTAAATAATTTAGTG
Found at i:92570941 original size:23 final size:24
Alignment explanation
Indices: 92570891--92570942 Score: 58
Period size: 23 Copynumber: 2.2 Consensus size: 24
92570881 AACTAAAGTT
92570891 TAAATTTAAAAAATAGAAAAACTA
1 TAAATTTAAAAAATAGAAAAACTA
92570915 -AAATCTT-AAAAATA-AAAATA-TA
1 TAAAT-TTAAAAAATAGAAAA-ACTA
92570937 TAAATT
1 TAAATT
92570943 AAATTCCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
22 7 0.28
23 16 0.64
24 2 0.08
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (24 bp):
TAAATTTAAAAAATAGAAAAACTA
Found at i:92576847 original size:25 final size:25
Alignment explanation
Indices: 92576818--92576865 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
92576808 GTAAAACAGA
*
92576818 TATAACTGATAAAAAAATTTAAAAT
1 TATAACTGATAAAAAAAATTAAAAT
*
92576843 TATAACTGTTAAAAAAAATTAAA
1 TATAACTGATAAAAAAAATTAAA
92576866 TTTACTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (25 bp):
TATAACTGATAAAAAAAATTAAAAT
Found at i:92580932 original size:17 final size:17
Alignment explanation
Indices: 92580910--92580943 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
92580900 GAATCATGAA
92580910 TAACTATTGCTTGCTTG
1 TAACTATTGCTTGCTTG
92580927 TAACTATTGCTTGCTTG
1 TAACTATTGCTTGCTTG
92580944 ATCAATGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.47
Consensus pattern (17 bp):
TAACTATTGCTTGCTTG
Found at i:92581456 original size:16 final size:17
Alignment explanation
Indices: 92581427--92581461 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
92581417 TGAATAAAAA
92581427 AATAAAAAATTATAAAT
1 AATAAAAAATTATAAAT
92581444 AATAAAAAA-TATAAAT
1 AATAAAAAATTATAAAT
92581460 AA
1 AA
92581462 AAGTATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AATAAAAAATTATAAAT
Found at i:92582060 original size:23 final size:24
Alignment explanation
Indices: 92582034--92582083 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
92582024 TGATTTTTAC
*
92582034 ATTTTA-AATTATTTAATGATAAT
1 ATTTTAGAATTATTTAATAATAAT
* *
92582057 A-TTTAGGATTATTTAGTAATAAT
1 ATTTTAGAATTATTTAATAATAAT
92582080 ATTT
1 ATTT
92582084 AAAAAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
22 4 0.18
23 16 0.73
24 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (24 bp):
ATTTTAGAATTATTTAATAATAAT
Found at i:92582084 original size:23 final size:23
Alignment explanation
Indices: 92582041--92582084 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
92582031 TACATTTTAA
*
92582041 ATTATTTAATGATAATATTTAGG
1 ATTATTTAATAATAATATTTAGG
*
92582064 ATTATTTAGTAATAATATTTA
1 ATTATTTAATAATAATATTTA
92582085 AAAAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (23 bp):
ATTATTTAATAATAATATTTAGG
Found at i:92582104 original size:15 final size:16
Alignment explanation
Indices: 92582084--92582123 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 16
92582074 AATAATATTT
92582084 AAAAAATATTTGTTAA
1 AAAAAATATTTGTTAA
92582100 AAAAAGATTTATTTGTTAA
1 AAAAA-A--TATTTGTTAA
92582119 AAAAA
1 AAAAA
92582124 TGAATTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.24
17 1 0.05
19 15 0.71
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (16 bp):
AAAAAATATTTGTTAA
Found at i:92582186 original size:7 final size:7
Alignment explanation
Indices: 92582131--92582180 Score: 91
Period size: 7 Copynumber: 7.0 Consensus size: 7
92582121 AAATGAATTT
92582131 AATTAAA
1 AATTAAA
92582138 AATTAAA
1 AATTAAA
92582145 AATTAAA
1 AATTAAA
92582152 AATTAAA
1 AATTAAA
92582159 AATTAAA
1 AATTAAA
92582166 AATTAAA
1 AATTAAA
92582173 AATATAAA
1 AAT-TAAA
92582181 TTATAACTGG
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
7 38 0.90
8 4 0.10
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AATTAAA
Found at i:92582296 original size:19 final size:19
Alignment explanation
Indices: 92582268--92582320 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
92582258 ATTTCATTTT
92582268 TTTTTA-CTTTTTTATTAAA
1 TTTTTATCTTTTTT-TTAAA
92582287 -TTTTATCTTTTTCTTTAAA
1 TTTTTATCTTTTT-TTTAAA
*
92582306 TTTTTTTCTTTTTTT
1 TTTTTATCTTTTTTT
92582321 AAGTTTTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.17
19 13 0.43
20 12 0.40
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTATCTTTTTTTTAAA
Found at i:92582297 original size:18 final size:18
Alignment explanation
Indices: 92582276--92582338 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
92582266 TTTTTTTACT
92582276 TTTTTATTAAATTTTATC
1 TTTTTATTAAATTTTATC
* *
92582294 TTTTTCTTTAAATTTTTTTC
1 TTTTT-ATTAAA-TTTTATC
* * *
92582314 TTTTT-TTAAGTTTTCTT
1 TTTTTATTAAATTTTATC
92582331 TTTTTATT
1 TTTTTATT
92582339 TATTTTATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
17 10 0.27
18 11 0.30
19 5 0.14
20 11 0.30
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (18 bp):
TTTTTATTAAATTTTATC
Found at i:92582298 original size:20 final size:21
Alignment explanation
Indices: 92582268--92582321 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 21
92582258 ATTTCATTTT
92582268 TTTTTA-C-TTTTTTATTAAA
1 TTTTTATCTTTTTTTATTAAA
*
92582287 -TTTTATCTTTTTCT-TTAAA
1 TTTTTATCTTTTTTTATTAAA
*
92582306 TTTTTTTCTTTTTTTA
1 TTTTTATCTTTTTTTA
92582322 AGTTTTCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 5 0.18
19 6 0.21
20 17 0.61
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTTATCTTTTTTTATTAAA
Found at i:92582393 original size:21 final size:22
Alignment explanation
Indices: 92582363--92582411 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
92582353 TTGGTTATTA
* * *
92582363 ATTTCAAAATTTTAAAATGTAT
1 ATTTGAAAGTTTTAAAATATAT
*
92582385 ATTTGAAATGTTTTATAATATAT
1 ATTTGAAA-GTTTTAAAATATAT
92582408 ATTT
1 ATTT
92582412 TAAAAATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (22 bp):
ATTTGAAAGTTTTAAAATATAT
Found at i:92582521 original size:36 final size:35
Alignment explanation
Indices: 92582421--92582660 Score: 141
Period size: 36 Copynumber: 7.0 Consensus size: 35
92582411 TTAAAAATTT
92582421 AAATAT-TATTTTTAAATTATTTTTTAAATTTTAA
1 AAATATATATTTTTAAATTATTTTTTAAATTTTAA
** *
92582455 GTAT-TATATTTTTAAATTATGTCTTATAAATTTTAA
1 AAATATATATTTTTAAATTAT-T-TTTTAAATTTTAA
92582491 AAATATAT-TTTTTAAATTTATTTTTCTAAATTTT--
1 AAATATATATTTTTAAA-TTATTTTT-TAAATTTTAA
** * *
92582525 AAATAT-T-TTTAAAAAATA-TTTTTAAA----CA
1 AAATATATATTTTTAAATTATTTTTTAAATTTTAA
* * * *
92582553 AAATAAAATAATTTCAAATATATATATTT-AA-TTTAA
1 AAAT-ATATATTTTTAAAT-TAT-TTTTTAAATTTTAA
* * *
92582589 ATATATATATATTGAAATTATTTCTTATAAATTTTAA
1 AAATATATATTTTTAAATTATTT-TT-TAAATTTTAA
* * *
92582626 AAATA-AAATTTTGAAATTATTTTTTTAATTTTAA
1 AAATATATATTTTTAAATTATTTTTTAAATTTTAA
92582660 A
1 A
92582661 TATTAATTTT
Statistics
Matches: 159, Mismatches: 26, Indels: 42
0.70 0.11 0.19
Matches are distributed among these distances:
28 4 0.03
29 1 0.01
30 5 0.03
31 9 0.06
32 4 0.03
33 11 0.07
34 41 0.26
35 16 0.10
36 52 0.33
37 16 0.10
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (35 bp):
AAATATATATTTTTAAATTATTTTTTAAATTTTAA
Found at i:92582557 original size:15 final size:13
Alignment explanation
Indices: 92582525--92582550 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92582515 TCTAAATTTT
92582525 AAATATTTTTAAA
1 AAATATTTTTAAA
92582538 AAATATTTTTAAA
1 AAATATTTTTAAA
92582551 CAAAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATATTTTTAAA
Found at i:92582592 original size:19 final size:20
Alignment explanation
Indices: 92582561--92582598 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
92582551 CAAAATAAAA
92582561 TAATTTCAAATATATATATT
1 TAATTTCAAATATATATATT
92582581 TAATTT-AAATATATATAT
1 TAATTTCAAATATATATAT
92582599 ATTGAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTTCAAATATATATATT
Found at i:92582666 original size:13 final size:13
Alignment explanation
Indices: 92582650--92582679 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
92582640 AATTATTTTT
92582650 TTAATTTTAAATA
1 TTAATTTTAAATA
92582663 TTAATTTTAAATA
1 TTAATTTTAAATA
92582676 TTAA
1 TTAA
92582680 ATATATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTAATTTTAAATA
Found at i:92582701 original size:22 final size:21
Alignment explanation
Indices: 92582639--92582702 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 21
92582629 TAAAATTTTG
*
92582639 AAAT-TATTTTTTTAAT-TTT
1 AAATATATTTTTATAATATTT
*
92582658 AAATATTAATTTTA-AATA-TT
1 AAATA-TATTTTTATAATATTT
92582678 AAATATATTTTTAATAATATTT
1 AAATATATTTTT-ATAATATTT
92582700 AAA
1 AAA
92582703 CATTTAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
19 10 0.28
20 11 0.31
21 10 0.28
22 5 0.14
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
AAATATATTTTTATAATATTT
Found at i:92583117 original size:28 final size:28
Alignment explanation
Indices: 92583086--92583157 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
92583076 TTGAAAGTTT
*
92583086 AAAATATTTAAATATTTTATAATATC-AA
1 AAAATATTTAAATATTTAAT-ATATCAAA
*
92583114 AAAATATTT-AATATTTAATATTTCAAA
1 AAAATATTTAAATATTTAATATATCAAA
92583141 AATAATATTTAAA-ATTT
1 AA-AATATTTAAATATTT
92583158 GAAAAAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
26 4 0.10
27 13 0.33
28 20 0.51
29 2 0.05
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (28 bp):
AAAATATTTAAATATTTAATATATCAAA
Found at i:92583148 original size:21 final size:22
Alignment explanation
Indices: 92583122--92583176 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
92583112 AAAAAATATT
* *
92583122 TAATATTTAATATTT-CAAAAA
1 TAATATTTAAAATTTGAAAAAA
92583143 TAATATTTAAAATTTGAAAAAA
1 TAATATTTAAAATTTGAAAAAA
*
92583165 TAAT-TTCAAAAT
1 TAATATTTAAAAT
92583177 ATATATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 21 0.70
22 9 0.30
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (22 bp):
TAATATTTAAAATTTGAAAAAA
Found at i:92583173 original size:34 final size:34
Alignment explanation
Indices: 92583133--92583200 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
92583123 AATATTTAAT
92583133 ATTTCAAAA-ATAATATTTAAAATTTGAAAAAATA
1 ATTTCAAAATAT-ATATTTAAAATTTGAAAAAATA
*
92583167 ATTTCAAAATATATATTTAAAATTTTAAAAAATA
1 ATTTCAAAATATATATTTAAAATTTGAAAAAATA
92583201 TATATTAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 30 0.94
35 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (34 bp):
ATTTCAAAATATATATTTAAAATTTGAAAAAATA
Found at i:92583202 original size:23 final size:23
Alignment explanation
Indices: 92583172--92583240 Score: 86
Period size: 23 Copynumber: 2.9 Consensus size: 23
92583162 AAATAATTTC
92583172 AAAATATATATTTAAAATTTTAA
1 AAAATATATATTTAAAATTTTAA
*
92583195 AAAATATATATTAATAAAATATTTCA
1 AAAATATATATT--TAAAAT-TTTAA
*
92583221 AATATATAT-TTTAAAATTTT
1 AAAATATATATTTAAAATTTT
92583241 TAAAGTTAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
22 3 0.07
23 18 0.44
25 8 0.20
26 12 0.29
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAATATATATTTAAAATTTTAA
Found at i:92583228 original size:24 final size:22
Alignment explanation
Indices: 92583161--92583237 Score: 75
Period size: 23 Copynumber: 3.2 Consensus size: 22
92583151 AAAATTTGAA
92583161 AAAATAATTTCAAAATATATATTT
1 AAAAT-ATTTC-AAATATATATTT
*
92583185 AAAAT-TTTAAAAAATATATATTAAT
1 AAAATATTT--CAAATATATATT--T
92583210 AAAATATTTCAAATATATATTTT
1 AAAATATTTCAAATATATA-TTT
92583233 AAAAT
1 AAAAT
92583238 TTTTAAAGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
22 3 0.07
23 17 0.38
24 14 0.31
25 8 0.18
26 3 0.07
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATATTTCAAATATATATTT
Found at i:92583257 original size:47 final size:49
Alignment explanation
Indices: 92583161--92583259 Score: 132
Period size: 48 Copynumber: 2.1 Consensus size: 49
92583151 AAAATTTGAA
*
92583161 AAAATAATTTCAAAATATATATTTAAAATTTTAAAAAATATATATTAAT
1 AAAATAATTTCAAAATATATATTTAAAATTTTAAAAAATATATAATAAT
* **
92583210 AAAAT-ATTTC-AAATATATATTTTAAAATTTTTAAAGTTA-ATAATAAT
1 AAAATAATTTCAAAATATATA-TTTAAAATTTTAAAAAATATATAATAAT
92583257 AAA
1 AAA
92583260 TAAGTAAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
47 19 0.42
48 21 0.47
49 5 0.11
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (49 bp):
AAAATAATTTCAAAATATATATTTAAAATTTTAAAAAATATATAATAAT
Found at i:92583273 original size:4 final size:4
Alignment explanation
Indices: 92583254--92583292 Score: 60
Period size: 4 Copynumber: 9.5 Consensus size: 4
92583244 AGTTAATAAT
*
92583254 AATA AATA AGTAA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AA
92583293 AGTCAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 29 0.91
5 3 0.09
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:92589355 original size:16 final size:17
Alignment explanation
Indices: 92589322--92589361 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
92589312 TTACTGTGAA
92589322 AAAATAAAAAATAAAAT
1 AAAATAAAAAATAAAAT
*
92589339 AAAATAAATAA-AAAAT
1 AAAATAAAAAATAAAAT
92589355 AAAATAA
1 AAAATAA
92589362 CACACAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAATAAAAAATAAAAT
Found at i:92593810 original size:17 final size:17
Alignment explanation
Indices: 92593777--92593818 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
92593767 AATTTGTGAA
92593777 AAAACTAAAAAATAAAAT
1 AAAA-TAAAAAATAAAAT
92593795 AAAATAAAGAAA-AAAAT
1 AAAATAAA-AAATAAAAT
92593812 AAAATAA
1 AAAATAA
92593819 CACACAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (17 bp):
AAAATAAAAAATAAAAT
Found at i:92596667 original size:25 final size:26
Alignment explanation
Indices: 92596605--92596667 Score: 76
Period size: 25 Copynumber: 2.4 Consensus size: 26
92596595 TATTTTCTCA
*
92596605 AAAATTTAAAAATTATTAATGATTCAAT
1 AAAA-TTAAAAATTA-TAATGATTAAAT
92596633 -AAATTGAAAAATTA-AATGATTAAAT
1 AAAATT-AAAAATTATAATGATTAAAT
92596658 AAAATTAAAA
1 AAAATTAAAA
92596668 TTTAGGAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
25 14 0.44
26 7 0.22
27 11 0.34
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (26 bp):
AAAATTAAAAATTATAATGATTAAAT
Found at i:92598947 original size:21 final size:20
Alignment explanation
Indices: 92598919--92598960 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
92598909 CCGAAGTGTT
*
92598919 CCCCACTTGGAATTAAGTGA
1 CCCCACTTGGAACTAAGTGA
92598939 CCCCAACTTGGAACTAAGTGA
1 CCCC-ACTTGGAACTAAGTGA
92598960 C
1 C
92598961 AATGGTATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (20 bp):
CCCCACTTGGAACTAAGTGA
Found at i:92604986 original size:85 final size:85
Alignment explanation
Indices: 92604843--92605021 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
92604833 GGCCGGCCAT
92604843 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
92604908 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
92604928 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
92604993 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
92605013 GGGCATGGG
1 GAGCATGGG
92605022 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:92607231 original size:49 final size:47
Alignment explanation
Indices: 92607152--92607608 Score: 700
Period size: 47 Copynumber: 9.6 Consensus size: 47
92607142 TATTTGAATA
92607152 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
92607199 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
92607247 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
92607294 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
92607343 AATGTGAAAGTGCATATATATGTGATAAGCCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92607392 AATGTGAAAGTGTATATATATGTAATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
92607441 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
92607488 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
92607535 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92607582 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
92607609 TCCCGAAGGG
Statistics
Matches: 379, Mismatches: 26, Indels: 10
0.91 0.06 0.02
Matches are distributed among these distances:
46 23 0.06
47 176 0.46
48 22 0.06
49 158 0.42
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:92609081 original size:23 final size:23
Alignment explanation
Indices: 92609049--92609161 Score: 61
Period size: 23 Copynumber: 5.4 Consensus size: 23
92609039 AGAGTGATAT
92609049 ATTCGGGCTAAGTCCCGAAGAGC
1 ATTCGGGCTAAGTCCCGAAGAGC
* * *
92609072 ATTCGTGCT-AGT---G-ATA-T
1 ATTCGGGCTAAGTCCCGAAGAGC
*
92609089 ATCCGGGCTAAGTCCCGAAGAGC
1 ATTCGGGCTAAGTCCCGAAGAGC
* * *
92609112 ATTCGTGCT-AGT---G-ATA-T
1 ATTCGGGCTAAGTCCCGAAGAGC
*
92609129 ATCCGGGCTAAGTCCCGAAGAGC
1 ATTCGGGCTAAGTCCCGAAGAGC
*
92609152 ATTCGTGCTA
1 ATTCGGGCTA
92609162 GTGATATATC
Statistics
Matches: 61, Mismatches: 17, Indels: 24
0.60 0.17 0.24
Matches are distributed among these distances:
17 14 0.23
18 10 0.16
19 2 0.03
21 2 0.03
22 10 0.16
23 23 0.38
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (23 bp):
ATTCGGGCTAAGTCCCGAAGAGC
Found at i:92609364 original size:40 final size:40
Alignment explanation
Indices: 92609041--92609352 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
92609031 GAGAATTGAG
*
92609041 AGTGATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
92609081 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
92609121 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
92609161 AGTGATATATCCGGGCTAAGTCTCGAGGAGAATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
92609201 AGTGATATATCCGGGCTAAGTCTCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
92609241 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
92609281 AGTGATATATCTGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
92609321 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
92609353 ATCATGCTGG
Statistics
Matches: 254, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 254 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:92609633 original size:58 final size:57
Alignment explanation
Indices: 92609564--92609672 Score: 164
Period size: 57 Copynumber: 1.9 Consensus size: 57
92609554 CGAATGATTA
* *
92609564 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTC-TTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
* * *
92609622 GAGGCACTGTGTGTGCGAGTTCTTCAACCAAGCACTATGTGTGCGAGATCG
1 GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCG
92609673 ATCAGTGGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 26 0.57
58 20 0.43
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
Found at i:92612064 original size:28 final size:27
Alignment explanation
Indices: 92612001--92612234 Score: 362
Period size: 28 Copynumber: 8.6 Consensus size: 27
92611991 ATATTAAGTC
* * *
92612001 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
92612028 CGCACACTTAATGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
92612056 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
92612084 CGCACACTTAGTGCTACATAGTCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
92612110 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
92612138 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
92612165 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
92612193 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
92612220 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92612235 GCACAATTTA
Statistics
Matches: 195, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
26 24 0.12
27 68 0.35
28 103 0.53
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:92612192 original size:109 final size:110
Alignment explanation
Indices: 92612001--92612234 Score: 391
Period size: 109 Copynumber: 2.1 Consensus size: 110
92611991 ATATTAAGTC
* *
92612001 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAATGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAATGCTACATAATCAAACTCGCACACTTA
92612066 GTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAA-T
66 GTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
* * * *
92612110 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTC-AATTCGCACACTT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAATGCTACATAATCAAACTCGCACACTT
92612174 AGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
65 AGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
92612220 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92612235 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
109 76 0.65
110 41 0.35
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (110 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAATGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
Found at i:92612193 original size:55 final size:55
Alignment explanation
Indices: 92612001--92612234 Score: 391
Period size: 55 Copynumber: 4.3 Consensus size: 55
92611991 ATATTAAGTC
* * * * * *
92612001 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAATGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTC-AATT
92612056 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAA-T
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
92612110 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
92612165 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
92612220 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92612235 GCACAATTTA
Statistics
Matches: 172, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
54 54 0.31
55 93 0.54
56 25 0.15
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
Found at i:92620142 original size:27 final size:27
Alignment explanation
Indices: 92620112--92620373 Score: 425
Period size: 27 Copynumber: 9.6 Consensus size: 27
92620102 ATATTAAGTC
* * *
92620112 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
92620139 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
92620167 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
92620194 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
92620222 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
92620249 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
92620277 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
92620304 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
92620332 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
92620359 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92620374 GCACAATTTA
Statistics
Matches: 223, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
27 118 0.53
28 105 0.47
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:92620196 original size:55 final size:55
Alignment explanation
Indices: 92620112--92620373 Score: 470
Period size: 55 Copynumber: 4.8 Consensus size: 55
92620102 ATATTAAGTC
* * * * *
92620112 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
*
92620167 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
92620222 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
92620277 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
92620332 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
92620374 GCACAATTTA
Statistics
Matches: 202, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 202 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:92622731 original size:85 final size:85
Alignment explanation
Indices: 92622588--92622766 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
92622578 GGCCGGCCAT
92622588 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
92622653 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
92622673 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
92622738 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
92622758 GGGCATGGG
1 GAGCATGGG
92622767 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:92624986 original size:49 final size:47
Alignment explanation
Indices: 92624907--92625409 Score: 835
Period size: 47 Copynumber: 10.6 Consensus size: 47
92624897 TATTTGAATA
92624907 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
92624954 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
92625003 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
92625050 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92625099 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
92625146 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
92625195 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
92625242 AATTTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
92625289 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
92625336 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92625383 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
92625410 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 20, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 292 0.68
49 138 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Done.