Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 274 of 362
Found at i:92625015 original size:96 final size:96
Alignment explanation
Indices: 92624907--92625409 Score: 861
Period size: 96 Copynumber: 5.3 Consensus size: 96
92624897 TATTTGAATA
92624907 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
92624972 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
92625003 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
92625068 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92625099 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
92625164 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92625195 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATTTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
92625258 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
92625289 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
92625352 TATGTGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92625383 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
92625410 TCCCGAAGGG
Statistics
Matches: 389, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
94 146 0.38
96 243 0.62
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:92627893 original size:107 final size:107
Alignment explanation
Indices: 92627707--92627908 Score: 359
Period size: 107 Copynumber: 1.9 Consensus size: 107
92627697 TCTCTCTCTC
* *
92627707 TTTTTCAAATTCGAGCATTTTGCTGAATGGACTACAATTTAAGAGCATTCGATACTTCCTTTCAA
1 TTTTTCAAATTCGAGCATTTTGCTAAATGGACTACAATTTAAGAGCATTAGATACTTCCTTTCAA
*
92627772 GTCCCCCAAACTTATTTTTAAAGAATACTTCGAGTAGTTTTT
66 CTCCCCCAAACTTATTTTTAAAGAATACTTCGAGTAGTTTTT
* *
92627814 TTTTTCAAATTCGAGCATTTTGCTAAATGTACTACAATTTTAGAGCATTAGATACTTCCTTTCAA
1 TTTTTCAAATTCGAGCATTTTGCTAAATGGACTACAATTTAAGAGCATTAGATACTTCCTTTCAA
92627879 CTCCCCCAAACTTATTTTTAAAGAATACTT
66 CTCCCCCAAACTTATTTTTAAAGAATACTT
92627909 TGAATAGTAC
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
107 90 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (107 bp):
TTTTTCAAATTCGAGCATTTTGCTAAATGGACTACAATTTAAGAGCATTAGATACTTCCTTTCAA
CTCCCCCAAACTTATTTTTAAAGAATACTTCGAGTAGTTTTT
Found at i:92630028 original size:25 final size:27
Alignment explanation
Indices: 92629985--92630045 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
92629975 TTTTCTGAAA
*
92629985 AATTT-AAAAATTATTAATGATTCAAT-
1 AATTTAAAAAATTA-TAATGATTAAATG
92630011 AATTTAAAAAATTA-AATGATTAAATG
1 AATTTAAAAAATTATAATGATTAAATG
*
92630037 AAATTAAAA
1 AATTTAAAA
92630046 GTTAGGGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 10 0.32
26 13 0.42
27 8 0.26
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (27 bp):
AATTTAAAAAATTATAATGATTAAATG
Found at i:92630608 original size:17 final size:18
Alignment explanation
Indices: 92630581--92630614 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
92630571 AATTAAATAT
92630581 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
92630599 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
92630615 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:92633321 original size:22 final size:22
Alignment explanation
Indices: 92633277--92633321 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
92633267 TAGCTTTTTC
*
92633277 AGTAAAAAAAGTTAGTGAACAT
1 AGTAAAAAAAGTTAGTCAACAT
*
92633299 AGTAAAAAAAGTTAGTCAGCAT
1 AGTAAAAAAAGTTAGTCAACAT
92633321 A
1 A
92633322 TGCAAGCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.53, C:0.07, G:0.18, T:0.22
Consensus pattern (22 bp):
AGTAAAAAAAGTTAGTCAACAT
Found at i:92635650 original size:29 final size:29
Alignment explanation
Indices: 92635616--92635747 Score: 203
Period size: 29 Copynumber: 4.6 Consensus size: 29
92635606 TAATCAACCG
* * *
92635616 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTCAGTGCCATGCA-TTTCAAGCT
*
92635645 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
*
92635674 CGTACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92635703 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92635732 CGCACACTCAGTGCCA
1 CGCACACTCAGTGCCA
92635748 ATCTCTCAAC
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
28 3 0.03
29 94 0.97
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTCAGTGCCATGCATTTCAAGCT
Found at i:92643623 original size:29 final size:29
Alignment explanation
Indices: 92643589--92643691 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
92643579 TAATCAACCG
* * *
92643589 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTCAGTGCCATGCA-TTTCAAGCT
*
92643618 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92643647 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92643676 CGCACACTCAGTGCCA
1 CGCACACTCAGTGCCA
92643692 ATCTCTCAAC
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
28 3 0.04
29 67 0.96
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTCAGTGCCATGCATTTCAAGCT
Found at i:92649515 original size:36 final size:36
Alignment explanation
Indices: 92649434--92649559 Score: 109
Period size: 36 Copynumber: 3.5 Consensus size: 36
92649424 CTCCCTATTT
*
92649434 TGGTGTGTTTT-GATTGGACTAGCTCTT-TGGAGCCAT-
1 TGGTGTGTTTTGGA-TGGATTAGCTCTTAT-GAG-CATC
92649470 TGGTGTGTTTTGGATGGATTAGCTCTTATGAGCATC
1 TGGTGTGTTTTGGATGGATTAGCTCTTATGAGCATC
* * **
92649506 TGGTTTGTTTCGAGCAT--ATTAGCTCTTATGAAAATC
1 TGGTGTGTTTTG-G-ATGGATTAGCTCTTATGAGCATC
* *
92649542 TGATGTGTTTTGGTTGGA
1 TGGTGTGTTTTGGATGGA
92649560 ATATCGATGA
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
34 1 0.01
35 4 0.05
36 63 0.85
37 4 0.05
38 2 0.03
ACGTcount: A:0.17, C:0.11, G:0.29, T:0.43
Consensus pattern (36 bp):
TGGTGTGTTTTGGATGGATTAGCTCTTATGAGCATC
Found at i:92652767 original size:16 final size:16
Alignment explanation
Indices: 92652746--92652794 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
92652736 TTAATTAAAA
*
92652746 AAGGTAGAAATAACAC
1 AAGGTAAAAATAACAC
92652762 AAGGTAAAAATAACAC
1 AAGGTAAAAATAACAC
* *
92652778 GACGTTAAAAATAACAC
1 -AAGGTAAAAATAACAC
92652795 GACGTTAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (16 bp):
AAGGTAAAAATAACAC
Found at i:92652788 original size:17 final size:17
Alignment explanation
Indices: 92652753--92652802 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
92652743 AAAAAGGTAG
* *
92652753 AAATAACAC-AAGGTAA
1 AAATAACACGACGTTAA
92652769 AAATAACACGACGTTAA
1 AAATAACACGACGTTAA
92652786 AAATAACACGACGTTAA
1 AAATAACACGACGTTAA
92652803 CGATTAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 9 0.29
17 22 0.71
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (17 bp):
AAATAACACGACGTTAA
Found at i:92653770 original size:29 final size:29
Alignment explanation
Indices: 92653731--92653927 Score: 193
Period size: 29 Copynumber: 6.8 Consensus size: 29
92653721 CAAATTTTAG
* *
92653731 TAAAAGGATGCCTTTGTGGCTATCTTTTT
1 TAAAAGGATGCCTTTGTGGCAATCTTTGT
* *
92653760 TAAAAGGATGCTTTTGTGGCTATCTTTGT
1 TAAAAGGATGCCTTTGTGGCAATCTTTGT
* *
92653789 TAAAAGGAAGCCTTTGTGGCAATCTTAGT
1 TAAAAGGATGCCTTTGTGGCAATCTTTGT
* *
92653818 TAAAAGG-TAGCCTTTGTGGCGATCTCTGT
1 TAAAAGGAT-GCCTTTGTGGCAATCTTTGT
* *
92653847 TAAAAGGA-ACCTTTTGTGGCAATCTCTGT
1 TAAAAGGATGCC-TTTGTGGCAATCTTTGT
** * *
92653876 TAAAAAAAAT-CGTTTGTGGCAATATTTGT
1 T-AAAAGGATGCCTTTGTGGCAATCTTTGT
* *
92653905 TAAAAAAGATGTCTTTGTGGCAA
1 T-AAAAGGATGCCTTTGTGGCAA
92653928 GACTCTGAAG
Statistics
Matches: 142, Mismatches: 20, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
28 2 0.01
29 124 0.87
30 16 0.11
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (29 bp):
TAAAAGGATGCCTTTGTGGCAATCTTTGT
Found at i:92653877 original size:87 final size:87
Alignment explanation
Indices: 92653727--92653925 Score: 231
Period size: 87 Copynumber: 2.3 Consensus size: 87
92653717 AACACAAATT
* * * ** * *
92653727 TTAG-TAAAAGGATGCCTTTGTGGCTATCTTTTTTAAAAGGATGCTTTTGTGGCTATCTTTGTTA
1 TTAGTTAAAAGGATGCCTTTGTGGCGATCTCTGTTAAAAGGAACCTTTTGTGGCAATCTCTGTTA
** *
92653791 AAAGGAAGCCTTTGTGGCAATC
66 AAAAAAAGCCTTTGTGGCAATA
92653813 TTAGTTAAAAGG-TAGCCTTTGTGGCGATCTCTGTTAAAAGGAACCTTTTGTGGCAATCTCTGTT
1 TTAGTTAAAAGGAT-GCCTTTGTGGCGATCTCTGTTAAAAGGAACCTTTTGTGGCAATCTCTGTT
* *
92653877 AAAAAAAATCGTTTGTGGCAATA
65 AAAAAAAAGCCTTTGTGGCAATA
* * *
92653900 TTTGTTAAAAAAGATGTCTTTGTGGC
1 TTAGTT-AAAAGGATGCCTTTGTGGC
92653926 AAGACTCTGA
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
86 5 0.05
87 73 0.78
88 15 0.16
89 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.38
Consensus pattern (87 bp):
TTAGTTAAAAGGATGCCTTTGTGGCGATCTCTGTTAAAAGGAACCTTTTGTGGCAATCTCTGTTA
AAAAAAAGCCTTTGTGGCAATA
Found at i:92656236 original size:46 final size:47
Alignment explanation
Indices: 92656089--92656302 Score: 217
Period size: 46 Copynumber: 4.5 Consensus size: 47
92656079 TTTGTGTTCT
* *
92656089 AGTGTAAGACATGTCTGGGACATGCATTGGCTAT--ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATCGA-GATGAGAGCC
* * *
92656135 AGTGTAAGACAATGTCTGGGACATGGCAACGG-TATTGAGATGAGAGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCTATCGAGATGAGAGCC
92656183 AGTGTAAGACATGTCTGGGACATGCATCGGCT-TCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATCGAGATG-AGAGCC
* * * *
92656229 AGTGTAAGACAAGTATGGGACATGGCATCGGC-A-CGGATATGTGAGAGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTATC-GAGA--TGAGAGCC
92656278 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
92656303 GCGTCAGCCT
Statistics
Matches: 142, Mismatches: 13, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
46 48 0.34
47 42 0.30
48 24 0.17
49 16 0.11
50 12 0.08
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTATCGAGATGAGAGCC
Found at i:92656379 original size:96 final size:98
Alignment explanation
Indices: 92656131--92656403 Score: 289
Period size: 96 Copynumber: 2.9 Consensus size: 98
92656121 ATATTATGAG
* * *
92656131 AGCCAGTGTAAGACAATGTCTGGGACATGGCAACGGTATTG--AGATGAGAGCTAGTGTAAGA-C
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGAATTGATAGATGAGAGCTAGTGTAAGACC
* *
92656193 ATGTCTGGGACAT-GCATCGGCTTCGAGATGTA
66 ATGTCTGGGACATGGCATCAGCCTCGAGATGTA
* * * **
92656225 AGCCAGTGTAAGA-CAAGTATGGGACATGGCATCGGCACGGATATG-TGAGAGCTAGTGTAAGAC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGAATTGATA-GATGAGAGCTAGTGTAAGAC
* *
92656288 CATGTCTGGGACATGGCGTCAGCCTC-A-ATTTCAA
65 CATGTCTGGGACATGGCATCAGCCTCGAGATGT--A
* *
92656322 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATC-GAATTGATAGATGAG-CCT-GTGTAAGAC
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGAATTGATAGATGAGAGCTAGTGTAAGAC
* *
92656384 CATGCCTAGGACATGGCATC
65 CATGTCTGGGACATGGCATC
92656404 GGTATTATAC
Statistics
Matches: 148, Mismatches: 21, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
93 20 0.14
94 13 0.09
95 21 0.14
96 42 0.28
97 12 0.08
98 22 0.15
99 18 0.12
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (98 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGAATTGATAGATGAGAGCTAGTGTAAGACC
ATGTCTGGGACATGGCATCAGCCTCGAGATGTA
Found at i:92664988 original size:47 final size:47
Alignment explanation
Indices: 92664934--92665338 Score: 632
Period size: 47 Copynumber: 8.6 Consensus size: 47
92664924 TATTTGAATA
*
92664934 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
92664981 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
92665028 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
92665077 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
92665124 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
92665171 AGTGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
92665218 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGACG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * *
92665265 AATGTGAAAGTGTATATATGTGAT-AGGTCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGG-CCGAATGGCCGATGTGATG
*
92665312 GATGTGAAAGTGTATATATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
92665339 TCCCGAAGGG
Statistics
Matches: 333, Mismatches: 21, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
46 3 0.01
47 284 0.85
48 2 0.01
49 44 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:92667113 original size:40 final size:40
Alignment explanation
Indices: 92666750--92667101 Score: 506
Period size: 40 Copynumber: 8.8 Consensus size: 40
92666740 GAGAATTGAG
92666750 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
92666790 AGTGATGTATCTGGGCTAATTCCCGGAGAGTATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
92666830 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
92666870 AATGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
92666910 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
92666950 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCCTTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
92666990 AGTGATGTATTCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
92667030 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
92667070 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
92667102 ATCATGCTGG
Statistics
Matches: 278, Mismatches: 34, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 278 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:92671994 original size:39 final size:39
Alignment explanation
Indices: 92671906--92672077 Score: 197
Period size: 39 Copynumber: 4.4 Consensus size: 39
92671896 ATATCCGGAC
* * *
92671906 TAAGATCCGAAGGCCTTTGTGCGAGATACTAAAT-CGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
*
92671945 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
**
92671984 TAAGTCCGAA-GCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
* * * *
92672022 TACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
*
92672061 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
92672078 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 56 0.47
39 57 0.48
40 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
Found at i:92680090 original size:38 final size:38
Alignment explanation
Indices: 92680039--92680114 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
92680029 AAATTGGCTT
*
92680039 TTAATTTTGTTTTTAATTCATTTTAACTACTAAATGAC
1 TTAATTTTGTTTTTAATTCATTTTAACAACTAAATGAC
92680077 TTAATTTTGTTTTTAATTCATTTTAACAACTAAATGAC
1 TTAATTTTGTTTTTAATTCATTTTAACAACTAAATGAC
92680115 CAAAATGTCC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.05, T:0.51
Consensus pattern (38 bp):
TTAATTTTGTTTTTAATTCATTTTAACAACTAAATGAC
Found at i:92684845 original size:14 final size:16
Alignment explanation
Indices: 92684821--92684852 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
92684811 AGTAGAAACC
92684821 TAGAGATATATGA-AT
1 TAGAGATATATGATAT
92684836 TAGA-ATATATGATAT
1 TAGAGATATATGATAT
92684851 TA
1 TA
92684853 TGTTAATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.38
Consensus pattern (16 bp):
TAGAGATATATGATAT
Found at i:92688047 original size:343 final size:343
Alignment explanation
Indices: 92687421--92688106 Score: 1176
Period size: 343 Copynumber: 2.0 Consensus size: 343
92687411 ATAAGTCCTT
*
92687421 TTCACCGATTGTGCTACTGAGGTAAGTTTGCATGTAAATAAGATATCGTTTTTACTTATGTTATA
1 TTCACCGATTGTGCTACCGAGGTAAGTTTGCATGTAAATAAGATATCGTTTTTACTTATGTTATA
*
92687486 ATATTTTGTTATTATATGAAAGGTGGTTGCATATTGAATGATCACTTGATGTAAATTATGAATTG
66 ATATTTTGTTATTATATAAAAGGTGGTTGCATATTGAATGATCACTTGATGTAAATTATGAATTG
*
92687551 AAATTGATTATGGATGAATTGATATAATGTTGAACAGTGAGGAATTTCCCGGTTGGACCATCGGA
131 AAATTGATTATGGATGAATTGATAAAATGTTGAACAGTGAGGAATTTCCCGGTTGGACCATCGGA
*
92687616 ATAGAAAAGATACGGATGATCCATTGCGAAAACACATGTGTAGTACTATGTGCAGGCTACTATGT
196 ATAGAAAAGATACGAATGATCCATTGCGAAAACACATGTGTAGTACTATGTGCAGGCTACTATGT
* * * *
92687681 GTTTAAAATTGTTTTAGGTCACGTGTGTCGTCCTAAGTGCAGGCTACTATGCGTACTCGATAGCT
261 GTTTAAAATGGTTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCT
*
92687746 TCGATCACATGTGTGGTA
326 TCAATCACATGTGTGGTA
* * *
92687764 TTCACCGATTGTTCTACCGAGGTAATTTTGTATGTAAATAAGATATCGTTTTTACTTATGTTATA
1 TTCACCGATTGTGCTACCGAGGTAAGTTTGCATGTAAATAAGATATCGTTTTTACTTATGTTATA
92687829 ATATTTTGTTATTATATAAAAGGTGGTTGCATATTGAATGATCACTTGATGTAAATTATGAATTG
66 ATATTTTGTTATTATATAAAAGGTGGTTGCATATTGAATGATCACTTGATGTAAATTATGAATTG
* *
92687894 AAATTGATTATGGATGAATTGATAAAATGTTGAACAGTGAGGAATTTTCTGGTTGGACC-TCCGG
131 AAATTGATTATGGATGAATTGATAAAATGTTGAACAGTGAGGAATTTCCCGGTTGGACCAT-CGG
* * *
92687958 AATAGAAAAGATACGAATGATCCGTTGTGAAAACATATGTGTAGTACTATGTGCAGGCTACTATG
195 AATAGAAAAGATACGAATGATCCATTGCGAAAACACATGTGTAGTACTATGTGCAGGCTACTATG
* *
92688023 TGTTTAAAATGGTTTTAGGTCACGTGTGTAGTACTAAGTGTATGCTACTATGCGTACCCGATAGC
260 TGTTTAAAATGGTTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGC
*
92688088 TTCAATCACATGTTTGGTA
325 TTCAATCACATGTGTGGTA
92688107 AGTGTAAGCC
Statistics
Matches: 322, Mismatches: 20, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
342 1 0.00
343 321 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (343 bp):
TTCACCGATTGTGCTACCGAGGTAAGTTTGCATGTAAATAAGATATCGTTTTTACTTATGTTATA
ATATTTTGTTATTATATAAAAGGTGGTTGCATATTGAATGATCACTTGATGTAAATTATGAATTG
AAATTGATTATGGATGAATTGATAAAATGTTGAACAGTGAGGAATTTCCCGGTTGGACCATCGGA
ATAGAAAAGATACGAATGATCCATTGCGAAAACACATGTGTAGTACTATGTGCAGGCTACTATGT
GTTTAAAATGGTTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCT
TCAATCACATGTGTGGTA
Found at i:92694369 original size:46 final size:46
Alignment explanation
Indices: 92694306--92694430 Score: 137
Period size: 47 Copynumber: 2.7 Consensus size: 46
92694296 AACTCGTAGT
* ** *
92694306 CGATGCATGTCCTAGGCATGTCTTACACTAGCT-TACATCTTG-AGGC
1 CGATGCATGTCCCAGGCATGTCTTACACTAGCTCT-CATAATGTA-CC
* * *
92694352 TGATGCATGTCCCAGGCATGGTCTTACACTGGCTCTCGTAATGTACC
1 CGATGCATGTCCCAGGCAT-GTCTTACACTAGCTCTCATAATGTACC
*
92694399 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGGCATGTCTTACACTAGC
92694431 ACACAATAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
46 29 0.44
47 35 0.53
48 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGGCATGTCTTACACTAGCTCTCATAATGTACC
Found at i:92696390 original size:17 final size:18
Alignment explanation
Indices: 92696368--92696401 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92696358 TAAGAGTTGA
*
92696368 TAAA-TTTATTTTTCTAT
1 TAAATTTTATTATTCTAT
92696385 TAAATTTTATTATTCTA
1 TAAATTTTATTATTCTA
92696402 GAAAGTAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (18 bp):
TAAATTTTATTATTCTAT
Found at i:92699907 original size:49 final size:49
Alignment explanation
Indices: 92699835--92700059 Score: 198
Period size: 49 Copynumber: 4.7 Consensus size: 49
92699825 TGATATATGT
* *
92699835 GCTAGTGCAAAACCTGTCTGGGACATGGCATCGGCATCGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCATCGATAGATGAGA
* * * * * *
92699884 GCTAGTGTAAGACCTGTCTGGGACACGGCATCAGCCTCAAGATATGCA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCATCGATAGATG-AGA
* * * * * *
92699933 GCTAGTGTAAGATCTGTCTGGGACATGGCATTGGC-TTG--GGGTGTG-
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCATCGATAGATGAGA
* *
92699978 TC-AGTGTAAGACCTGTCTGGGACATGGCATCGACA-CAGATA-AGTGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCATC-GATAGA-TGAGA
* *
92700026 GCTAGTGTAAGACTTGTCTGGGACAAGG-ATCGGC
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGC
92700060 CTTAGTGTAA
Statistics
Matches: 137, Mismatches: 30, Indels: 19
0.74 0.16 0.10
Matches are distributed among these distances:
44 29 0.21
45 2 0.01
46 2 0.01
47 3 0.02
48 7 0.05
49 93 0.68
50 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (49 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCATCGATAGATGAGA
Found at i:92700098 original size:34 final size:34
Alignment explanation
Indices: 92700028--92700098 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 34
92700018 AAGTGAGAGC
* * **
92700028 TAGTGTAAGACTTGTCTGGGACAAGGATCGGCCT
1 TAGTGTAAGACCTGACTGGGACAAGGATCGAACT
*
92700062 TAGTGTAAGACCTGACTGGGACATGGCATC-AACT
1 TAGTGTAAGACCTGACTGGGACAAGG-ATCGAACT
92700096 TAG
1 TAG
92700099 ATGTGAGATC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
34 28 0.90
35 3 0.10
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (34 bp):
TAGTGTAAGACCTGACTGGGACAAGGATCGAACT
Found at i:92700142 original size:83 final size:82
Alignment explanation
Indices: 92699980--92700132 Score: 191
Period size: 83 Copynumber: 1.9 Consensus size: 82
92699970 GGGGTGTGTC
* * * * *
92699980 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCTAGTGTAAGACTTGTCT
1 AGTGTAAGACCTGACTGGGACATGGCATCAACACAGAT-AGTGAGAGCCAATGTAAGACATGTCT
*
92700045 GGGACAAGGATCGGCCTT
65 GGAACAAGGATCGGCCTT
** * *
92700063 AGTGTAAGACCTGACTGGGACATGGCATCAACTTAGAT-GTGAGATCCAATGTAAGACCATGTTT
1 AGTGTAAGACCTGACTGGGACATGGCATCAACACAGATAGTGAGAGCCAATGTAAGA-CATGTCT
92700127 GGAACA
65 GGAACA
92700133 TGGCGTCGGC
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
81 15 0.25
82 10 0.17
83 34 0.58
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (82 bp):
AGTGTAAGACCTGACTGGGACATGGCATCAACACAGATAGTGAGAGCCAATGTAAGACATGTCTG
GAACAAGGATCGGCCTT
Found at i:92701232 original size:40 final size:41
Alignment explanation
Indices: 92701188--92701283 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 41
92701178 TCAAGGTTTT
*
92701188 TGGACACGGGCGTGTCACGGTCGTGTGAAGGACACGAG-CA
1 TGGACACGGGCGTGTCACGGCCGTGTGAAGGACACGAGCCA
* * * *
92701228 TGGACACGGGCGTGTCATGGCCGTGTGAGGGACATGGGCCA
1 TGGACACGGGCGTGTCACGGCCGTGTGAAGGACACGAGCCA
92701269 TGGACACGGGCGTGT
1 TGGACACGGGCGTGT
92701284 GCCAGAGCGT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.19, C:0.22, G:0.43, T:0.17
Consensus pattern (41 bp):
TGGACACGGGCGTGTCACGGCCGTGTGAAGGACACGAGCCA
Found at i:92705763 original size:16 final size:16
Alignment explanation
Indices: 92705742--92705773 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92705732 GCCCAATAAC
*
92705742 CTAAACTACCAGCCCA
1 CTAAACTAACAGCCCA
92705758 CTAAACTAACAGCCCA
1 CTAAACTAACAGCCCA
92705774 TTACACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.41, G:0.06, T:0.12
Consensus pattern (16 bp):
CTAAACTAACAGCCCA
Found at i:92706329 original size:20 final size:20
Alignment explanation
Indices: 92706295--92706341 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
92706285 ATATTGTTAC
92706295 TATTATTTTTATTAATA-TAT
1 TATTATTTTTATTAA-AGTAT
92706315 TAATTATTTTT-TTAAAGTAT
1 T-ATTATTTTTATTAAAGTAT
92706335 TATTATT
1 TATTATT
92706342 ACTAATGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.28
20 9 0.36
21 9 0.36
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TATTATTTTTATTAAAGTAT
Found at i:92706338 original size:23 final size:21
Alignment explanation
Indices: 92706296--92706341 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
92706286 TATTGTTACT
92706296 ATTATTTTTATTAATATATTA
1 ATTATTTTTATTAATATATTA
92706317 ATTATTTTT-TTAA-AGTATT-
1 ATTATTTTTATTAATA-TATTA
92706336 ATTATT
1 ATTATT
92706342 ACTAATGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.29
20 8 0.33
21 9 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTATTTTTATTAATATATTA
Found at i:92706404 original size:13 final size:14
Alignment explanation
Indices: 92706380--92706410 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
92706370 ATTATTATCA
92706380 ATATTAATATATGT
1 ATATTAATATATGT
92706394 ATATT-ATATATGT
1 ATATTAATATATGT
92706407 ATAT
1 ATAT
92706411 ATTCATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:92706507 original size:12 final size:12
Alignment explanation
Indices: 92706492--92706523 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
92706482 TATATTTCAT
*
92706492 TATTATTTTTAA
1 TATTATTATTAA
92706504 TATTATTATTAA
1 TATTATTATTAA
92706516 TATTATTA
1 TATTATTA
92706524 GATGTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTATTATTAA
Found at i:92706595 original size:26 final size:24
Alignment explanation
Indices: 92706539--92706658 Score: 89
Period size: 26 Copynumber: 4.7 Consensus size: 24
92706529 TATTTATTCC
* * * *
92706539 TAATATGTATATTATGTAAATGTCT
1 TAATAT-TATATTATATAATTTTTT
*
92706564 TAATATTATATTATATGTATTTTTT
1 TAATATTATATTATAT-AATTTTTT
*
92706589 TATATATGT-TATGTATATAAGTTTTT
1 TA-ATAT-TATAT-TATATAATTTTTT
*
92706615 TAATATTATATTTTATACATATTTTT
1 TAATATTATATTATATA-AT-TTTTT
92706641 TAATATTATTAGTTATAT
1 TAATATTA-TA-TTATAT
92706659 TTTTTATATA
Statistics
Matches: 76, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
24 15 0.20
25 20 0.26
26 28 0.37
27 8 0.11
28 5 0.07
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (24 bp):
TAATATTATATTATATAATTTTTT
Found at i:92719248 original size:73 final size:70
Alignment explanation
Indices: 92719065--92719558 Score: 438
Period size: 73 Copynumber: 6.9 Consensus size: 70
92719055 CTTTCCAAGG
* *
92719065 AAAATTAACTCATATTGTGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTA-TTTTAATTCAT
1 AAAATTAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTTAT
92719129 GTTTTC
66 G-TTTC
* * ** ** *
92719135 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAGT
1 --AAAATTAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGT--CACGCTGAGGTATTTTTAAT
92719200 TTATGTTTC
62 TTATGTTTC
* *
92719209 AAATATTTACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTAAGGTA-TTTTAATTCC
1 AAA-ATTAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAA-T--
*
92719273 TTTTGTTTC
62 TTATGTTTC
* * * ** * * * *
92719282 AAAAATCAGCTCATATTGCGAGGGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAGTTTA
1 -AAAATTAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTTA
92719347 TGTTT-
65 TGTTTC
* * *
92719352 AGAAAAT-ACTCATATTGCGAAAAGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTCC
1 A-AAATTAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATT--
*
92719416 TGTTGTTTC
63 T-ATGTTTC
* * ** * * * * *
92719425 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTA
1 -AAAATTAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTTA
*
92719490 TGTTCC
65 TGTTTC
* * ** * * * *
92719496 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAAGTATTTTCAATTT
1 AAAATTAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTT
92719559 CTGCTTTTCA
Statistics
Matches: 342, Mismatches: 64, Indels: 34
0.78 0.15 0.08
Matches are distributed among these distances:
69 46 0.13
70 63 0.18
71 25 0.07
72 45 0.13
73 84 0.25
74 69 0.20
75 10 0.03
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (70 bp):
AAAATTAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTTAT
GTTTC
Found at i:92719454 original size:143 final size:142
Alignment explanation
Indices: 92719072--92719908 Score: 643
Period size: 145 Copynumber: 5.7 Consensus size: 142
92719062 AGGAAAATTA
* *
92719072 ACTCATATTGTGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCATG-T-TTTC
1 ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCCTGTTGTTTC
* * ** * *
92719135 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAGT
66 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAAT
*
92719200 TTATGTTTCAAATATTT
129 TTATGTTT-AAA-A-AT
* *
92719217 ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTAAGGTATTTTAATTCCTTTTGTTTC
1 ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCCTGTTGTTTC
* * * *
92719282 -AAAAATCAGCTCATATTGCGAGGGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAGTTT
66 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
92719346 ATGTTTAGAAAAT
131 ATGTTTA-AAAAT
* *
92719359 ACTCATATTGCGAAAAGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTCCTGTTGTTT
1 ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTA-TTTTAATTCCTGTTGTTT
* * *
92719424 C-AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
65 CAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
**
92719488 TATGTTCCAAAAT
130 TATGTTTAAAAAT
* ** * * *
92719501 CAACTCACATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAAGTATTTTCAATTTCTGCTTT
1 --ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTT-AA-TTC--C---
* * *
92719566 TCAATTCCTACTTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
57 T---GT--T--GTTTC-AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* **
92719631 TGAGGTATTTTCAATTCATGTTT-TCAAT
114 TGAGGTATTTTCAATTTATGTTTAAAAAT
* * * ** * *
92719659 --TTATGTTGTTC-A-A---GAATCAA--CTCATATTGCGAGAGATG-GGTTGAACCTTTTAATT
1 ACTCATATTG--CGAGAGGTGAGTCAAGCCTCA-GGT-C-A-CGCTGAGG-T--A--TTTTAATT
* * * *
92719714 TCTACTT-TTTC--AAAATCAGCTCATATTGCTAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
55 CCT-GTTGTTTCAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* * **
92719776 TATTTTCAATTTTTGTGTTTTAATTT
119 TATTTTCAA--TTTATGTTTAAAAAT
* ** * * *
92719802 CAACTCATATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG-
1 --ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGT-ATTTTAATTCCTGTTGT
* * *
92719866 -TCAAAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAG
63 TTCAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAG
92719909 TTCACATGCT
Statistics
Matches: 557, Mismatches: 84, Indels: 102
0.75 0.11 0.14
Matches are distributed among these distances:
140 58 0.10
142 56 0.10
143 93 0.17
144 71 0.13
145 103 0.18
146 38 0.07
147 13 0.02
148 6 0.01
149 6 0.01
150 7 0.01
151 5 0.01
152 6 0.01
153 6 0.01
154 6 0.01
155 5 0.01
156 3 0.01
157 8 0.01
158 3 0.01
159 64 0.11
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (142 bp):
ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCCTGTTGTTTC
AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
ATGTTTAAAAAT
Found at i:92719524 original size:213 final size:216
Alignment explanation
Indices: 92719065--92719557 Score: 574
Period size: 213 Copynumber: 2.3 Consensus size: 216
92719055 CTTTCCAAGG
* * ** * *
92719065 AAAATTAACTCATATTGTGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTT-AATTCAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTCAT
* **
92719129 GTTTTCAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTATT
66 GTTTTCAAAAAAT-AACTCATATTGCGAGAAATGAGTCAAGCCTCAGGT-ACACGCTGAGGTATT
* * * * *
92719194 TTTAGTTTATGTTTCAAATATTTACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTAA
129 TTTAATTTATGTTTCAAATAATCACTCATATTGCGAGAGGTGAGTCAAGCCTCAAGACACGCTAA
* *
92719259 GGTATTTTAATTCCTTTTGTTTCA
194 GGTATTTCAATT-CTTATGTTTCA
* * * *
92719283 AAAATCAGCTCATATTGCGAGGGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAGTTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTCAT
*
92719348 G-TTT-AGAAAAT-ACTCATATTGCGA-AAAGTGAGTCAAGCCTCAGGT-CACGCTGAGGTATTT
66 GTTTTCAAAAAATAACTCATATTGCGAGAAA-TGAGTCAAGCCTCAGGTACACGCTGAGGTATTT
* ** *
92719408 TTAATTCCTGTTGTTTCAAA-AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
130 TTAATT--T-ATGTTTCAAATAATCA-CTCATATTGCGAGAGGTGAGTCAAGCCTCAAGACACGC
* *
92719472 TGAGGTAATTTCAA-T-TTATG-TTCC
191 TAAGGT-ATTTCAATTCTTATGTTTCA
* *
92719496 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAAGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATT
92719558 TCTGCTTTTC
Statistics
Matches: 236, Mismatches: 32, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
213 80 0.34
214 7 0.03
215 31 0.13
216 48 0.20
217 12 0.05
218 52 0.22
219 6 0.03
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (216 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTCAT
GTTTTCAAAAAATAACTCATATTGCGAGAAATGAGTCAAGCCTCAGGTACACGCTGAGGTATTTT
TAATTTATGTTTCAAATAATCACTCATATTGCGAGAGGTGAGTCAAGCCTCAAGACACGCTAAGG
TATTTCAATTCTTATGTTTCA
Found at i:92719568 original size:14 final size:14
Alignment explanation
Indices: 92719549--92719583 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
92719539 CGCTGAAGTA
* *
92719549 TTTTCAATTTCTGC
1 TTTTCAATTCCTAC
92719563 TTTTCAATTCCTAC
1 TTTTCAATTCCTAC
92719577 TTTTCAA
1 TTTTCAA
92719584 AAAAATCAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.03, T:0.54
Consensus pattern (14 bp):
TTTTCAATTCCTAC
Found at i:92719656 original size:13 final size:13
Alignment explanation
Indices: 92719638--92719671 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
92719628 CGCTGAGGTA
92719638 TTTTCAATTCATG
1 TTTTCAATTCATG
*
92719651 TTTTCAATTTATG
1 TTTTCAATTCATG
92719664 TTGTTCAA
1 TT-TTCAA
92719672 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (13 bp):
TTTTCAATTCATG
Found at i:92719855 original size:72 final size:73
Alignment explanation
Indices: 92719725--92719908 Score: 244
Period size: 72 Copynumber: 2.5 Consensus size: 73
92719715 CTACTTTTTC
* * * * *
92719725 AAAATCAGCTCATATTGCTAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
***
92719790 G-TGTTTT
66 GTTGTCAA
** *
92719797 AATTTCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
92719862 GTTGTCAA
66 GTTGTCAA
* *
92719870 AAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
92719909 TTCACATGCT
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
72 58 0.61
73 37 0.39
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTGTCAA
Found at i:92721917 original size:20 final size:20
Alignment explanation
Indices: 92721883--92721929 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
92721873 ATATTGTTAC
92721883 TATTATTTTTATTAATA-TAT
1 TATTATTTTTATTAA-AGTAT
92721903 TAATTATTTTT-TTAAAGTAT
1 T-ATTATTTTTATTAAAGTAT
92721923 TATTATT
1 TATTATT
92721930 ACTAATGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.28
20 9 0.36
21 9 0.36
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TATTATTTTTATTAAAGTAT
Found at i:92721926 original size:23 final size:21
Alignment explanation
Indices: 92721884--92721929 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
92721874 TATTGTTACT
92721884 ATTATTTTTATTAATATATTA
1 ATTATTTTTATTAATATATTA
92721905 ATTATTTTT-TTAA-AGTATT-
1 ATTATTTTTATTAATA-TATTA
92721924 ATTATT
1 ATTATT
92721930 ACTAATGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.29
20 8 0.33
21 9 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTATTTTTATTAATATATTA
Found at i:92721992 original size:13 final size:14
Alignment explanation
Indices: 92721968--92721998 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
92721958 ATTATTATCA
92721968 ATATTAATATATGT
1 ATATTAATATATGT
92721982 ATATT-ATATATGT
1 ATATTAATATATGT
92721995 ATAT
1 ATAT
92721999 ATTCATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:92722014 original size:24 final size:24
Alignment explanation
Indices: 92721985--92722036 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
92721975 TATATGTATA
92721985 TTATATATGTA-TATATTCA-TACAT
1 TTATATA-GTACTATATTCATTAC-T
*
92722009 TTATATAGTACTATTTTCATTACT
1 TTATATAGTACTATATTCATTACT
92722033 TTAT
1 TTAT
92722037 TTTAATATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 3 0.12
24 19 0.76
25 3 0.12
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.54
Consensus pattern (24 bp):
TTATATAGTACTATATTCATTACT
Found at i:92722095 original size:12 final size:12
Alignment explanation
Indices: 92722080--92722111 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
92722070 TATATTTCAT
*
92722080 TATTATTTTTAA
1 TATTATTATTAA
92722092 TATTATTATTAA
1 TATTATTATTAA
92722104 TATTATTA
1 TATTATTA
92722112 GATGTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTATTATTAA
Found at i:92722183 original size:26 final size:24
Alignment explanation
Indices: 92722127--92722246 Score: 89
Period size: 26 Copynumber: 4.7 Consensus size: 24
92722117 TATTTATTCC
* * * *
92722127 TAATATGTATATTATGTAAATGTCT
1 TAATAT-TATATTATATAATTTTTT
*
92722152 TAATATTATATTATATGTATTTTTT
1 TAATATTATATTATAT-AATTTTTT
*
92722177 TATATATGT-TATGTATATAAGTTTTT
1 TA-ATAT-TATAT-TATATAATTTTTT
*
92722203 TAATATTATATTTTATACATATTTTT
1 TAATATTATATTATATA-AT-TTTTT
92722229 TAATATTATTAGTTATAT
1 TAATATTA-TA-TTATAT
92722247 TTTTTATATA
Statistics
Matches: 76, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
24 15 0.20
25 20 0.26
26 28 0.37
27 8 0.11
28 5 0.07
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (24 bp):
TAATATTATATTATATAATTTTTT
Found at i:92722291 original size:21 final size:20
Alignment explanation
Indices: 92722258--92722300 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
92722248 TTTTATATAC
92722258 TATTACATGTATACTTCTAA
1 TATTACATGTATACTTCTAA
* *
92722278 TATTATATCGTATATTTCTAA
1 TATTACAT-GTATACTTCTAA
92722299 TA
1 TA
92722301 CCATCATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.49
Consensus pattern (20 bp):
TATTACATGTATACTTCTAA
Found at i:92723596 original size:38 final size:38
Alignment explanation
Indices: 92723545--92723706 Score: 252
Period size: 38 Copynumber: 4.3 Consensus size: 38
92723535 ATATTCGATG
92723545 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
92723583 TATATCCGAGTTAAATCCAGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
92723621 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
92723659 TATATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
92723697 TATATTCGGG
1 TATATCCGGG
92723707 CCTTCATGCC
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 112 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:92723820 original size:43 final size:43
Alignment explanation
Indices: 92723699--92723823 Score: 196
Period size: 43 Copynumber: 2.9 Consensus size: 43
92723689 GCTGGTATTA
* * *
92723699 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
92723742 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* * *
92723785 TATTCAGGCCTTCGTGCCTAGCAGGCATAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGA
92723824 AATGATATGT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 76 1.00
ACGTcount: A:0.15, C:0.26, G:0.30, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
Found at i:92727955 original size:42 final size:42
Alignment explanation
Indices: 92727891--92728045 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 42
92727881 CTAAAACTAT
*
92727891 GTGTAAGACCATATCTGGGATATGGCATCAATGTAAGATTTC
1 GTGTAAGACCATATCTGAGATATGGCATCAATGTAAGATTTC
* *
92727933 GTGTAAGACCATATTTGAGATATGGCATCAATGTGAGATTTC
1 GTGTAAGACCATATCTGAGATATGGCATCAATGTAAGATTTC
* * * *** **
92727975 GTGTAAGACCATAGT-TGGGCTATTGGCATCGATACGAGATCCC
1 GTGTAAGACCATA-TCTGAGATA-TGGCATCAATGTAAGATTTC
* *
92728018 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGAGATATGGCAT
92728046 TGGTATGGTA
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
42 64 0.65
43 34 0.35
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGAGATATGGCATCAATGTAAGATTTC
Found at i:92728243 original size:15 final size:16
Alignment explanation
Indices: 92728217--92728246 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
92728207 ATGAACCCTC
92728217 AGTAAGGTTATGATTG
1 AGTAAGGTTATGATTG
92728233 AGTAA-GTTATGATT
1 AGTAAGGTTATGATT
92728247 ATAAGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (16 bp):
AGTAAGGTTATGATTG
Found at i:92734375 original size:6 final size:6
Alignment explanation
Indices: 92734357--92734400 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
92734347 TGCAAATGAA
* * *
92734357 TCATTT CTCATTT TCATTT TCATTT CCATTT CCATTT CCATTT T
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
92734401 GAGAAAACCA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.16, C:0.25, G:0.00, T:0.59
Consensus pattern (6 bp):
TCATTT
Found at i:92734381 original size:12 final size:12
Alignment explanation
Indices: 92734358--92734400 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
92734348 GCAAATGAAT
*
92734358 CATTTCTCATTTT
1 CATTT-TCATTTC
92734371 CATTTTCATTTC
1 CATTTTCATTTC
*
92734383 CATTTCCATTTC
1 CATTTTCATTTC
92734395 CATTTT
1 CATTTT
92734401 GAGAAAACCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (12 bp):
CATTTTCATTTC
Found at i:92734392 original size:18 final size:19
Alignment explanation
Indices: 92734357--92734399 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
92734347 TGCAAATGAA
*
92734357 TCATTTCTCATTTTCATTT
1 TCATTTCTCATTTCCATTT
92734376 TCATTTC-CATTTCCATTT
1 TCATTTCTCATTTCCATTT
*
92734394 CCATTT
1 TCATTT
92734400 TGAGAAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (19 bp):
TCATTTCTCATTTCCATTT
Found at i:92738784 original size:29 final size:29
Alignment explanation
Indices: 92738751--92738852 Score: 152
Period size: 29 Copynumber: 3.5 Consensus size: 29
92738741 AATCAACCGG
* * * *
92738751 GCACACTTAGTACCATGTACTTT-AAACTC
1 GCACACTCAGTGCCATGCA-TTTCAAGCTC
92738780 GCACACTCAGTGCCATGCATTTCAAGCTC
1 GCACACTCAGTGCCATGCATTTCAAGCTC
92738809 GCACACTCAGTGCCATGCATTTCAAGCTC
1 GCACACTCAGTGCCATGCATTTCAAGCTC
92738838 GCACACTCAGTGCCA
1 GCACACTCAGTGCCA
92738853 ATCTCTCAAC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 65 0.96
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
GCACACTCAGTGCCATGCATTTCAAGCTC
Found at i:92748000 original size:28 final size:29
Alignment explanation
Indices: 92747967--92748067 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
92747957 TATAGTAAGT
* * *
92747967 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
92747995 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
92748024 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
92748053 CCACACACTTAGTGC
1 CCGCACACTTAGTGC
92748068 CAATTTCATG
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:92755128 original size:29 final size:29
Alignment explanation
Indices: 92755091--92755193 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
92755081 GTTGAGAGAT
*
92755091 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
*
92755120 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* * *
92755149 TGGCGCTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
92755178 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
92755194 CGGTTGATTA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
28 5 0.07
29 63 0.93
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:92763040 original size:29 final size:29
Alignment explanation
Indices: 92763003--92763134 Score: 203
Period size: 29 Copynumber: 4.6 Consensus size: 29
92762993 GTTGAGAGAT
92763003 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTGAGTGTGCGAGCTTGAAATGCA
92763032 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTGAGTGTGCGAGCTTGAAATGCA
92763061 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTGAGTGTGCGAGCTTGAAATGCA
* * * *
92763090 TGGCGCTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTGAGTGTGCGAGCTTGAAA-TGCA
*
92763119 TGGCACTAAGTGTGCG
1 TGGCACTGAGTGTGCG
92763135 CGGTTGATTA
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
28 5 0.05
29 92 0.95
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTGAGTGTGCGAGCTTGAAATGCA
Found at i:92767386 original size:29 final size:29
Alignment explanation
Indices: 92767342--92767502 Score: 243
Period size: 29 Copynumber: 5.6 Consensus size: 29
92767332 TAATCAACCC
* * *
92767342 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTCAGTGCCATGCA-TTTCAAGCT
* *
92767371 CGCACACTTAGCGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
* *
92767400 CGCACACTCAGCGCCATCCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92767429 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92767458 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92767487 CGCACACTCAGTGCCA
1 CGCACACTCAGTGCCA
92767503 ATCTCTCAAC
Statistics
Matches: 124, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
28 3 0.02
29 121 0.98
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.24
Consensus pattern (29 bp):
CGCACACTCAGTGCCATGCATTTCAAGCT
Found at i:92769637 original size:22 final size:22
Alignment explanation
Indices: 92769611--92769656 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
92769601 GCAAGGTAGT
* *
92769611 ATGTGTTAAATGCTTTAATATA
1 ATGTGATAAATGATTTAATATA
*
92769633 ATGTGATAAATGATTTATTATA
1 ATGTGATAAATGATTTAATATA
92769655 AT
1 AT
92769657 TATGAGTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.02, G:0.13, T:0.46
Consensus pattern (22 bp):
ATGTGATAAATGATTTAATATA
Found at i:92776539 original size:32 final size:32
Alignment explanation
Indices: 92776503--92776596 Score: 98
Period size: 32 Copynumber: 2.9 Consensus size: 32
92776493 TTTTTGAGTG
**
92776503 GTACACACAAAGTATACCTTTCCTTTTCAAGT
1 GTACACACAAAGTATACCTAACCTTTTCAAGT
* * * * *
92776535 GTACATATAAAGTGTACATAACCTTTTCATGT
1 GTACACACAAAGTATACCTAACCTTTTCAAGT
* *
92776567 GATATACACAAAGTATACCCAACCTTTTCA
1 G-TACACACAAAGTATACCTAACCTTTTCA
92776597 CATTTGATAG
Statistics
Matches: 48, Mismatches: 13, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
32 26 0.54
33 22 0.46
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (32 bp):
GTACACACAAAGTATACCTAACCTTTTCAAGT
Found at i:92776631 original size:29 final size:29
Alignment explanation
Indices: 92776589--92776684 Score: 129
Period size: 29 Copynumber: 3.3 Consensus size: 29
92776579 GTATACCCAA
92776589 CCTTTTCACATTTGATAGCCAAAGCTATC
1 CCTTTTCACATTTGATAGCCAAAGCTATC
**
92776618 CCTTTTCACATTTGATAGCTGAAGCTATC
1 CCTTTTCACATTTGATAGCCAAAGCTATC
** *
92776647 CCTTTTCACATTCAATAGCCTAAGCTATC
1 CCTTTTCACATTTGATAGCCAAAGCTATC
* *
92776676 ACTATTCAC
1 CCTTTTCAC
92776685 TGATTAGGTA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.35
Consensus pattern (29 bp):
CCTTTTCACATTTGATAGCCAAAGCTATC
Found at i:92776656 original size:58 final size:58
Alignment explanation
Indices: 92776589--92776842 Score: 163
Period size: 62 Copynumber: 4.2 Consensus size: 58
92776579 GTATACCCAA
** * * *
92776589 CCTTTTCACATTTGATAGCCAAAGCTATCCCTTTTCAC-ATTTGATAGCTGAAGCTATC
1 CCTTTTCACATTCAATAGCCAAAGCTATCACTATTCACGATTAGATAGCTGAAGCTA-C
* * *
92776647 CCTTTTCACATTCAATAGCCTAAGCTATCACTATTCACTGATTAGGTAGCTGGAGCTAC
1 CCTTTTCACATTCAATAGCCAAAGCTATCACTATTCAC-GATTAGATAGCTGAAGCTAC
* * * * * *
92776706 CACTTTTCACTAATCAAGTAGCCGAAGCTA-CTACTTTTCACTGATCAGGTAGCCGAAGCTAAC
1 C-CTTTTCAC-ATTCAA-TAGCCAAAGCTATC-ACTATTCAC-GATTAGATAGCTGAAGCT-AC
* * * * * * * * *
92776769 ACTTTTCAC-TGATCAGGTAGCCGAAGTTACCACTTTTCACTGATCAGGTAGCCGAAGCTAC
1 CCTTTTCACAT--TCA-ATAGCCAAAGCTATCACTATTCAC-GATTAGATAGCTGAAGCTAC
92776830 CACTTTTCACATT
1 C-CTTTTCACATT
92776843 GTACGCACAA
Statistics
Matches: 164, Mismatches: 19, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
58 33 0.20
59 2 0.01
60 23 0.14
61 9 0.05
62 93 0.57
63 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (58 bp):
CCTTTTCACATTCAATAGCCAAAGCTATCACTATTCACGATTAGATAGCTGAAGCTAC
Found at i:92776704 original size:31 final size:31
Alignment explanation
Indices: 92776662--92776839 Score: 257
Period size: 31 Copynumber: 5.7 Consensus size: 31
92776652 TCACATTCAA
* * * *
92776662 TAGCCTAAGCTATCACTATTCACTGATTAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
* * * *
92776693 TAGCTGGAGCTACCACTTTTCACTAATCAAG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
*
92776724 TAGCCGAAGCTACTACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
*
92776755 TAGCCGAAGCTAACACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
*
92776786 TAGCCGAAGTTACCACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
92776817 TAGCCGAAGCTACCACTTTTCAC
1 TAGCCGAAGCTACCACTTTTCAC
92776840 ATTGTACGCA
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 129 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
TAGCCGAAGCTACCACTTTTCACTGATCAGG
Found at i:92776749 original size:62 final size:62
Alignment explanation
Indices: 92776633--92776839 Score: 260
Period size: 62 Copynumber: 3.4 Consensus size: 62
92776623 TCACATTTGA
* * * * *
92776633 TAGCTGAAGCTATCC-CTTTTCAC-ATTCAA-TAGCCTAAGCTA-TCACTATTCACTGATTAGG
1 TAGCCGAAGCTA-CCACTTTTCACTAATCAAGTAGCCGAAGCTACT-ACTTTTCACTGATCAGG
* *
92776693 TAGCTGGAGCTACCACTTTTCACTAATCAAGTAGCCGAAGCTACTACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGAAGCTACTACTTTTCACTGATCAGG
* * * * *
92776755 TAGCCGAAGCTAACACTTTTCACTGATCAGGTAGCCGAAGTTACCACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGAAGCTACTACTTTTCACTGATCAGG
92776817 TAGCCGAAGCTACCACTTTTCAC
1 TAGCCGAAGCTACCACTTTTCAC
92776840 ATTGTACGCA
Statistics
Matches: 130, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
59 2 0.02
60 19 0.15
61 5 0.04
62 103 0.79
63 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (62 bp):
TAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGAAGCTACTACTTTTCACTGATCAGG
Found at i:92783236 original size:18 final size:17
Alignment explanation
Indices: 92783193--92783237 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
92783183 TATTTATTAT
92783193 AATATTTATT--TTTTA
1 AATATTTATTAATTTTA
*
92783208 AA-ATTTTTTAATATTTA
1 AATATTTATTAAT-TTTA
92783225 AATATTTATTAAT
1 AATATTTATTAAT
92783238 GTGACACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 6 0.25
15 2 0.08
16 1 0.04
17 6 0.25
18 9 0.38
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
AATATTTATTAATTTTA
Found at i:92786087 original size:16 final size:18
Alignment explanation
Indices: 92786058--92786092 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
92786048 GTAACTTTTC
92786058 TTTCTTCTTCTTTTTATT
1 TTTCTTCTTCTTTTTATT
92786076 TTTCTT-TT-TTTTTATT
1 TTTCTTCTTCTTTTTATT
92786092 T
1 T
92786093 CTCTGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 2 0.12
18 6 0.35
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTCTTCTTCTTTTTATT
Found at i:92790404 original size:86 final size:86
Alignment explanation
Indices: 92790259--92790466 Score: 353
Period size: 86 Copynumber: 2.4 Consensus size: 86
92790249 TTAAGGTATG
* * *
92790259 GATTTTGTTCGGTTCTTGATAATTTCTAGGTTTTTGTAATTGTTGCTTCGTATACTATCTTCGGC
1 GATTTTGTTCGGTTTTTGATAATTTCTACGTTTTTGTAATGGTTGCTTCGTATACTATCTTCGGC
92790324 TATATAAGGCACTAAATGTGC
66 TATATAAGGCACTAAATGTGC
* *
92790345 GATTTTGTTCAGTTTTTGATAATTTCTACGTTTTTGTAATGGTTGCTTTGTATACTATCTTCGGC
1 GATTTTGTTCGGTTTTTGATAATTTCTACGTTTTTGTAATGGTTGCTTCGTATACTATCTTCGGC
92790410 TATATAAGGCACTAAATGTGC
66 TATATAAGGCACTAAATGTGC
* *
92790431 GATTTTGTTCGGTTTTTGATCATTTCTACGTATTTG
1 GATTTTGTTCGGTTTTTGATAATTTCTACGTTTTTG
92790467 GCACTAAGTG
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 114 1.00
ACGTcount: A:0.20, C:0.13, G:0.19, T:0.48
Consensus pattern (86 bp):
GATTTTGTTCGGTTTTTGATAATTTCTACGTTTTTGTAATGGTTGCTTCGTATACTATCTTCGGC
TATATAAGGCACTAAATGTGC
Found at i:92790596 original size:44 final size:44
Alignment explanation
Indices: 92790548--92790654 Score: 153
Period size: 44 Copynumber: 2.4 Consensus size: 44
92790538 GTTAATTGAG
*
92790548 AAAGCACTAAGTGTGCGGAATTATTAAGGCTTC-AGCTAATCTTT
1 AAAGCATTAAGTGTGCGGAATTATTAAGGCTTCGAG-TAATCTTT
* * **
92790592 AAAGCATTAAGTATACAAAATTATTAAGGCTTCGAGTAATCTTT
1 AAAGCATTAAGTGTGCGGAATTATTAAGGCTTCGAGTAATCTTT
92790636 AAAGCATTAAGTGTGCGGA
1 AAAGCATTAAGTGTGCGGA
92790655 TGTTTAAAGC
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 51 0.96
45 2 0.04
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (44 bp):
AAAGCATTAAGTGTGCGGAATTATTAAGGCTTCGAGTAATCTTT
Found at i:92805546 original size:12 final size:12
Alignment explanation
Indices: 92805529--92805554 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
92805519 ATCGGGCTGT
92805529 TACAGGTATCGA
1 TACAGGTATCGA
92805541 TACAGGTATCGA
1 TACAGGTATCGA
92805553 TA
1 TA
92805555 TTCGTGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (12 bp):
TACAGGTATCGA
Found at i:92806422 original size:15 final size:15
Alignment explanation
Indices: 92806390--92806418 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
92806380 ATTTTATGTG
92806390 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
92806405 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
92806419 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:92807656 original size:56 final size:56
Alignment explanation
Indices: 92807557--92807665 Score: 132
Period size: 56 Copynumber: 1.9 Consensus size: 56
92807547 CATGGCATCA
* * * *
92807557 ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGATTCTG
1 ATATATGTGTGCGAGTAAGACCACGTCTGAGACGTTGGCATCGATATGCGATTCTG
* *
92807613 ATATATGTGTGCGAGTAAGACC-CTGTCTGGGACAG-TGGTATCGATATGCGATT
1 ATATATGTGTGCGAGTAAGACCAC-GTCTGAGAC-GTTGGCATCGATATGCGATT
92807666 ACATGTAAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
55 1 0.02
56 43 0.96
57 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.33
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTCTGAGACGTTGGCATCGATATGCGATTCTG
Found at i:92825661 original size:21 final size:21
Alignment explanation
Indices: 92825632--92825699 Score: 118
Period size: 21 Copynumber: 3.2 Consensus size: 21
92825622 TTCAAGGGTA
*
92825632 TGTCATGACACCCTCAGTCTG
1 TGTCGTGACACCCTCAGTCTG
92825653 TGTCGTGACACCCTCAGTCTG
1 TGTCGTGACACCCTCAGTCTG
*
92825674 TGTCGTGACACCCTCAATCTG
1 TGTCGTGACACCCTCAGTCTG
92825695 TGTCG
1 TGTCG
92825700 CAACATCAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.16, C:0.32, G:0.22, T:0.29
Consensus pattern (21 bp):
TGTCGTGACACCCTCAGTCTG
Found at i:92826750 original size:17 final size:17
Alignment explanation
Indices: 92826730--92826765 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
92826720 GTTTTAAGAG
*
92826730 AAAAAATATATTAATGT
1 AAAAAATAGATTAATGT
92826747 AAAAAATAGATTAATGT
1 AAAAAATAGATTAATGT
92826764 AA
1 AA
92826766 CACCTGGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (17 bp):
AAAAAATAGATTAATGT
Found at i:92833520 original size:3 final size:3
Alignment explanation
Indices: 92833512--92833543 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
92833502 AATACTAGCG
92833512 ATA ATA ATA ATA ATA ATA ATA ATA ATTA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA A
92833544 ACAAATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:92833641 original size:21 final size:22
Alignment explanation
Indices: 92833617--92833663 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
92833607 AAAACGAGGT
*
92833617 AATAAAT-AAGAAT-ATATTAAA
1 AATAAATAAAG-ATGATAGTAAA
92833638 AAT-AATAAAGATGATAGTAAA
1 AATAAATAAAGATGATAGTAAA
92833659 AATAA
1 AATAA
92833664 TAATATACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 5 0.23
21 16 0.73
22 1 0.05
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (22 bp):
AATAAATAAAGATGATAGTAAA
Found at i:92835513 original size:44 final size:43
Alignment explanation
Indices: 92835451--92835535 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 43
92835441 CTTCATAGAT
*
92835451 AAGACTTGCAGCTTTGACCCGC-TCTACTGCAACTTTAGGGAGAC
1 AAGACTTGCAGCTTTGACCCGCTTC-ACTGC-ACTTCAGGGAGAC
* * *
92835495 AAGATTTGTAGCTTTGACCTGCTTCACTGCACTTCAGGGAG
1 AAGACTTGCAGCTTTGACCCGCTTCACTGCACTTCAGGGAG
92835536 TCCAAATCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 10 0.28
44 24 0.67
45 2 0.06
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.28
Consensus pattern (43 bp):
AAGACTTGCAGCTTTGACCCGCTTCACTGCACTTCAGGGAGAC
Found at i:92835751 original size:87 final size:82
Alignment explanation
Indices: 92835645--92835843 Score: 231
Period size: 83 Copynumber: 2.3 Consensus size: 82
92835635 ATAACATGAA
* * * **
92835645 CTCTCGCAATATGAGTTGATTTTTGAAAC-TTATCTTGAAAAGTAGATTTTGAAAATACCTC-GA
1 CTCTCGCAATATGAGTTGATTTTTGAAACATGA-ATT-AAAA-CAGAAATTGAAAATACCTCAG-
*
92835708 CATGTGACCCGAGGCTCAACTCAC
62 CATG-G--CCAAGGCTCAACTCAC
*
92835732 CTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGGAAATACCTCAGCAT
1 CTCTCGCAATATGAGTTGATTTTTG-AAACATGAATTAAAACAGAAATTGAAAATACCTCAGCAT
92835797 GGCCAAGGCTCAACTCAC
65 GGCCAAGGCTCAACTCAC
*
92835815 CTCTCTCAATATGAGTTGATTTTTTGAAA
1 CTCTCGCAATATGAGTTGA-TTTTTGAAA
92835844 AACAAAAATT
Statistics
Matches: 100, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
83 36 0.36
84 6 0.06
85 1 0.01
86 19 0.19
87 30 0.30
88 6 0.06
89 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (82 bp):
CTCTCGCAATATGAGTTGATTTTTGAAACATGAATTAAAACAGAAATTGAAAATACCTCAGCATG
GCCAAGGCTCAACTCAC
Found at i:92835988 original size:141 final size:138
Alignment explanation
Indices: 92835719--92836008 Score: 442
Period size: 141 Copynumber: 2.1 Consensus size: 138
92835709 ATGTGACCCG
* *
92835719 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATGAAAACAGAAATTGAA
*
92835784 AATACCTCAGCATGGCCAAGGCTCAACTCACCTCTCTCAATATGAGTTGATTTTTTGAAAAACAA
66 AATACCTCAGCATGCCCAAGGCTCAACTCACCTCTCTCAATATGAGTTGATTTTTTGAAAAACAA
92835849 AAATTAAA
131 AAATTAAA
*
92835857 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACA-GAAACTGAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AAAACATG-AA-TGAAAACAGAAAT
* *
92835921 TTAAAATACCTCAGCGTGCCGCAAGGCTCAACTCACCTCTCGT-AATATGAGTTGA-TTTTTGAA
62 TGAAAATACCTCAGCATGCC-CAAGGCTCAACTCACCTCTC-TCAATATGAGTTGATTTTTTGAA
*
92835984 AAACAGAAATTAAA
125 AAACAAAAATTAAA
92835998 AGGCTCAACTC
1 AGGCTCAACTC
92836009 TAATATGAGT
Statistics
Matches: 138, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
138 31 0.22
139 7 0.05
140 8 0.06
141 59 0.43
142 32 0.23
143 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (138 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATGAAAACAGAAATTGAA
AATACCTCAGCATGCCCAAGGCTCAACTCACCTCTCTCAATATGAGTTGATTTTTTGAAAAACAA
AAATTAAA
Found at i:92836030 original size:46 final size:50
Alignment explanation
Indices: 92835959--92836099 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 50
92835949 CAACTCACCT
92835959 CTCGTAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTC-A-A-
1 CTCGTAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACAC
*
92836006 CTC-TAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAAGCTCAACTCACC
1 CTCGTAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAA--CA-C
*
92836058 TCTCGTAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAG
1 -CTCGTAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
92836100 TACCTCAGCG
Statistics
Matches: 83, Mismatches: 3, Indels: 9
0.87 0.03 0.09
Matches are distributed among these distances:
46 40 0.48
47 4 0.05
50 1 0.01
53 3 0.04
54 35 0.42
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (50 bp):
CTCGTAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACAC
Found at i:92836225 original size:87 final size:87
Alignment explanation
Indices: 92836079--92836258 Score: 281
Period size: 87 Copynumber: 2.1 Consensus size: 87
92836069 GAGTTGATTT
* *
92836079 TTGAAAAACAGAAATTGAAAGTACCTCAGCGTGTATTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTACTGAGGCTCAACTCACCTCTCGCAATATGA
* *
92836144 GTTGATTTTTTTG-AAACATAAA
66 GTTGA-TTTTTGGCAAACAAAAA
** *
92836166 TTGAAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTACTGAGGCTCAACTCACCTCTCGCAATATGA
92836231 GTTGATTTTTGGCAAACAAAAA
66 GTTGATTTTTGGCAAACAAAAA
92836253 TTGAAA
1 TTGAAA
92836259 TTACCTCAGC
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
86 6 0.07
87 79 0.93
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (87 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTACTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGGCAAACAAAAA
Found at i:92836294 original size:73 final size:74
Alignment explanation
Indices: 92836177--92836327 Score: 259
Period size: 73 Copynumber: 2.1 Consensus size: 74
92836167 TGAAAAATGG
*
92836177 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
92836241 GGCAAACAA
66 GGAAAACAA
*
92836250 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
92836315 TGAAAACAA
66 GGAAAACAA
92836324 AAAT
1 AAAT
92836328 AAAAACATCA
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
73 57 0.78
74 16 0.22
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GGAAAACAA
Found at i:92837934 original size:20 final size:20
Alignment explanation
Indices: 92837896--92837933 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
92837886 ACCTCTCCAT
92837896 TTTCTTTTCTTCCTTTTTTC
1 TTTCTTTTCTTCCTTTTTTC
*
92837916 TTTC-TTTCTTTCTTTTTT
1 TTTCTTTTCTTCCTTTTTT
92837934 TTTTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTCTTTTCTTCCTTTTTTC
Found at i:92837943 original size:8 final size:8
Alignment explanation
Indices: 92837895--92837946 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
92837885 GACCTCTCCA
92837895 TTTTCTTT
1 TTTTCTTT
* *
92837903 TCTTCCTT
1 TTTTCTTT
92837911 TTTTCTTT
1 TTTTCTTT
*
92837919 CTTTCTTT
1 TTTTCTTT
92837927 CTTTT-TTT
1 -TTTTCTTT
*
92837935 TTTTATTT
1 TTTTCTTT
92837943 TTTT
1 TTTT
92837947 TTTGCTTTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 4 0.11
8 29 0.81
9 3 0.08
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTCTTT
Found at i:92837943 original size:12 final size:12
Alignment explanation
Indices: 92837909--92837955 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
92837899 CTTTTCTTCC
*
92837909 TTTTTTCTTTCT
1 TTTTTTCTTTTT
*
92837921 TTCTTTCTTTTT
1 TTTTTTCTTTTT
*
92837933 TTTTTTATTTTT
1 TTTTTTCTTTTT
*
92837945 TTTTTGCTTTT
1 TTTTTTCTTTT
92837956 GAATGAATGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.85
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:92838550 original size:9 final size:9
Alignment explanation
Indices: 92838536--92838566 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
92838526 ATTGATTTCT
92838536 TTTTTTTTG
1 TTTTTTTTG
92838545 TTTTTTTTG
1 TTTTTTTTG
*
92838554 TTTTTTTTC
1 TTTTTTTTG
92838563 TTTT
1 TTTT
92838567 CATGACTGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.00, C:0.03, G:0.06, T:0.90
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:92840932 original size:15 final size:17
Alignment explanation
Indices: 92840896--92840932 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
92840886 CCTATTTAGG
92840896 CATTTCATTCATCAAAA
1 CATTTCATTCATCAAAA
*
92840913 GATTTCATT-A-CAAAA
1 CATTTCATTCATCAAAA
92840928 CATTT
1 CATTT
92840933 TTCCATTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
15 9 0.50
16 1 0.06
17 8 0.44
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.38
Consensus pattern (17 bp):
CATTTCATTCATCAAAA
Found at i:92845162 original size:3 final size:3
Alignment explanation
Indices: 92845148--92845197 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
92845138 AATACTAGCG
* *
92845148 ATA ATG ATA ATA ATA ATT ATA ATA ATA ATA ATA ATA ATAA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
92845193 ATA AT
1 ATA AT
92845198 GGTAACAGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 36 0.88
4 3 0.07
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:92846264 original size:26 final size:26
Alignment explanation
Indices: 92846235--92846316 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
92846225 TGATACAAAT
92846235 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
92846261 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92846287 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92846313 TGAT
1 TGAT
92846317 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:92852764 original size:35 final size:35
Alignment explanation
Indices: 92852725--92852796 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
92852715 GTTTTTAAGG
*
92852725 TTAGGGTTTTGCCAAAATAAGTTAAGGTTTAGTGT
1 TTAGGGTTTTGCCAAAATAAGTTAAGGTTTAGAGT
* ** *
92852760 TTAGGTTTTTGTTAAAATAAGTTAGGGTTTAGAGT
1 TTAGGGTTTTGCCAAAATAAGTTAAGGTTTAGAGT
92852795 TT
1 TT
92852797 TAGTAGATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.28, C:0.03, G:0.25, T:0.44
Consensus pattern (35 bp):
TTAGGGTTTTGCCAAAATAAGTTAAGGTTTAGAGT
Found at i:92852906 original size:34 final size:33
Alignment explanation
Indices: 92852846--92853001 Score: 146
Period size: 34 Copynumber: 4.8 Consensus size: 33
92852836 AAATTTATTC
* *
92852846 AAATTAGGGTTTAGGATTTTTTAATAAATTAAGT
1 AAATTAGGGTTTAGG-GTTTTAAATAAATTAAGT
* *
92852880 AAATTAGGATTCTAGGGTTTTAAATAAATTAGGGT
1 AAATTAGGGTT-TAGGGTTTTAAATAAATTA-AGT
* *
92852915 ---TTAGGGTTTATAGTTTTTAAATAAATTAAGT
1 AAATTAGGGTTTA-GGGTTTTAAATAAATTAAGT
92852946 AAATTAGGGTTTTAGGGTTTTAAATAAA-T---T
1 AAATTAGGG-TTTAGGGTTTTAAATAAATTAAGT
**
92852976 AAATTAGGGTTTAGTTTTTTAAATAA
1 AAATTAGGGTTTAGGGTTTTAAATAA
92853002 CATTGTGTTT
Statistics
Matches: 103, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
29 15 0.15
30 10 0.10
31 4 0.04
32 22 0.21
33 1 0.01
34 41 0.40
35 10 0.10
ACGTcount: A:0.37, C:0.01, G:0.19, T:0.44
Consensus pattern (33 bp):
AAATTAGGGTTTAGGGTTTTAAATAAATTAAGT
Found at i:92852907 original size:25 final size:24
Alignment explanation
Indices: 92852874--92852923 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 24
92852864 TTTTAATAAA
*
92852874 TTAAGTAAATTAGGATTCTAGGGTT
1 TTAAATAAATTAGGATT-TAGGGTT
*
92852899 TTAAATAAATTAGGGTTTAGGGTT
1 TTAAATAAATTAGGATTTAGGGTT
92852923 T
1 T
92852924 ATAGTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.32, C:0.02, G:0.24, T:0.42
Consensus pattern (24 bp):
TTAAATAAATTAGGATTTAGGGTT
Found at i:92852932 original size:66 final size:66
Alignment explanation
Indices: 92852849--92853001 Score: 206
Period size: 66 Copynumber: 2.4 Consensus size: 66
92852839 TTTATTCAAA
* *
92852849 TTAGGGTTTAGGATTTTTTAATAAATTAAGTAAATTAGGATTCTAGGGTTTTAAATAAATTAGGG
1 TTAGGGTTTAAGATTTTTAAATAAATTAAGTAAATTAGGATTCTAGGGTTTTAAATAAATTAGGG
92852914 T
66 T
* *
92852915 TTAGGGTTTATAG-TTTTTAAATAAATTAAGTAAATTAGGGTTTTAGGGTTTTAAATAAATTA--
1 TTAGGGTTTA-AGATTTTTAAATAAATTAAGTAAATTAGGATTCTAGGGTTTTAAATAAATTAGG
**
92852977 AA
65 GT
*
92852979 TTAGGGTTT-AGTTTTTTAAATAA
1 TTAGGGTTTAAGATTTTTAAATAA
92853002 CATTGTGTTT
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
62 2 0.03
63 11 0.14
64 9 0.11
66 56 0.71
67 1 0.01
ACGTcount: A:0.36, C:0.01, G:0.19, T:0.44
Consensus pattern (66 bp):
TTAGGGTTTAAGATTTTTAAATAAATTAAGTAAATTAGGATTCTAGGGTTTTAAATAAATTAGGG
T
Found at i:92853030 original size:24 final size:24
Alignment explanation
Indices: 92852984--92853030 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
92852974 TTAAATTAGG
* *
92852984 GTTTAGTTTTTTAAATAACATTGT
1 GTTTAGTTTTTTAAACAAAATTGT
* *
92853008 GTTTATTTTTTTTAACAAAATTG
1 GTTTAGTTTTTTAAACAAAATTG
92853031 ACTATTTGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.55
Consensus pattern (24 bp):
GTTTAGTTTTTTAAACAAAATTGT
Found at i:92855727 original size:15 final size:14
Alignment explanation
Indices: 92855703--92855736 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
92855693 CTATTTTAAT
*
92855703 GTTTATGGATTATGG
1 GTTTAGGGATTAT-G
92855718 GTTTAGGGATTATG
1 GTTTAGGGATTATG
92855732 GTTTA
1 GTTTA
92855737 AGGGTTGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (14 bp):
GTTTAGGGATTATG
Found at i:92855776 original size:7 final size:7
Alignment explanation
Indices: 92855716--92855836 Score: 57
Period size: 7 Copynumber: 17.0 Consensus size: 7
92855706 TATGGATTAT
92855716 GGGTTTA
1 GGGTTTA
*
92855723 GGGATTA
1 GGGTTTA
*
92855730 TGGTTTAA
1 GGGTTT-A
92855738 GGG-TT-
1 GGGTTTA
*
92855743 GTGATTTA
1 G-GGTTTA
*
92855751 AGGTTTA
1 GGGTTTA
*
92855758 GGGGTTA
1 GGGTTTA
92855765 TGGGTTTA
1 -GGGTTTA
92855773 GGGTTTA
1 GGGTTTA
***
92855780 AATTTTA
1 GGGTTTA
*
92855787 GGATTTA
1 GGGTTTA
**
92855794 ATGTTTA
1 GGGTTTA
*
92855801 TGGTTTA
1 GGGTTTA
*
92855808 GGGATTA
1 GGGTTTA
* *
92855815 AGGATTA
1 GGGTTTA
92855822 GGAGTTTA
1 GG-GTTTA
92855830 GGGTTTA
1 GGGTTTA
92855837 AATTAATTAA
Statistics
Matches: 82, Mismatches: 26, Indels: 12
0.68 0.22 0.10
Matches are distributed among these distances:
5 1 0.01
6 1 0.01
7 65 0.79
8 15 0.18
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Found at i:92856484 original size:15 final size:16
Alignment explanation
Indices: 92856466--92856504 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
92856456 AAAAAAATTT
92856466 AAAATTTAAA-AATAA
1 AAAATTTAAACAATAA
*
92856481 AAAA-TAAAACAATAA
1 AAAATTTAAACAATAA
92856496 AAAATTTAA
1 AAAATTTAA
92856505 TATTTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 4 0.20
15 13 0.65
16 3 0.15
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATTTAAACAATAA
Found at i:92860918 original size:46 final size:46
Alignment explanation
Indices: 92860856--92860987 Score: 176
Period size: 46 Copynumber: 2.9 Consensus size: 46
92860846 CAACTCATGT
* * * *
92860856 AATTGAGGTGTATAAATGTTGTTAATTG-AGATGTTAAAGTGCTGCA
1 AATTGAAGTGTTTAAATGCTGTAAATTGAAG-TGTTAAAGTGCTGCA
92860902 AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCA
* * * *
92860948 AATTGAAGTGTTTGAATGCAGTAAATTGGAGTGTTTAAGT
1 AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGT
92860988 ACTTATTTTG
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 75 0.97
47 2 0.03
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (46 bp):
AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCA
Found at i:92860983 original size:23 final size:23
Alignment explanation
Indices: 92860856--92860985 Score: 131
Period size: 23 Copynumber: 5.7 Consensus size: 23
92860846 CAACTCATGT
* * * *
92860856 AATTGAGGTGTATAAATGTTGTT
1 AATTGAAGTGTTTAAATGCTGTA
*
92860879 AATTG-AGATG-TTAAAGTGCTGCA
1 AATTGAAG-TGTTTAAA-TGCTGTA
92860902 AATTGAAGTGTTTAAATGCTGTA
1 AATTGAAGTGTTTAAATGCTGTA
*
92860925 AATTGAAGTG-TTAAAGTGCTGCA
1 AATTGAAGTGTTTAAA-TGCTGTA
* *
92860948 AATTGAAGTGTTTGAATGCAGTA
1 AATTGAAGTGTTTAAATGCTGTA
*
92860971 AATTGGAGTGTTTAA
1 AATTGAAGTGTTTAA
92860986 GTACTTATTT
Statistics
Matches: 89, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.11
23 68 0.76
24 11 0.12
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (23 bp):
AATTGAAGTGTTTAAATGCTGTA
Found at i:92862181 original size:56 final size:56
Alignment explanation
Indices: 92862120--92862296 Score: 147
Period size: 56 Copynumber: 3.2 Consensus size: 56
92862110 TAAATTAGTT
92862120 AATTATTTAGTAAGTTAAAATGTGTAAAAAATTATCTCTCATCAATAAAAAAATTA
1 AATTATTTAGTAAGTTAAAATGTGTAAAAAATTATCTCTCATCAATAAAAAAATTA
* * * * * **
92862176 AATTATTTA--AACG---AGA--T-TAATAAAA-TAACATATAATAAATACTATGTAAATTA
1 AATTATTTAGTAA-GTTAAAATGTGTAA-AAAATTATC-TCTCATCAATA--A-AAAAATTA
92862229 GTTAATTATTTAGTAAGTTAAAATGTGTAAAAAATTATCTCTCATCAATAAAAAAATTA
1 ---AATTATTTAGTAAGTTAAAATGTGTAAAAAATTATCTCTCATCAATAAAAAAATTA
92862288 AATTATTTA
1 AATTATTTA
92862297 AACGAGATTA
Statistics
Matches: 89, Mismatches: 14, Indels: 36
0.64 0.10 0.26
Matches are distributed among these distances:
49 6 0.07
50 13 0.15
52 3 0.03
53 6 0.07
54 2 0.02
55 1 0.01
56 27 0.30
57 1 0.01
58 2 0.02
59 6 0.07
60 3 0.03
62 13 0.15
63 6 0.07
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.37
Consensus pattern (56 bp):
AATTATTTAGTAAGTTAAAATGTGTAAAAAATTATCTCTCATCAATAAAAAAATTA
Found at i:92862228 original size:112 final size:112
Alignment explanation
Indices: 92862094--92862323 Score: 451
Period size: 112 Copynumber: 2.1 Consensus size: 112
92862084 ATACATAATT
92862094 TATAATAAATACTATGTAAATTAGTTAATTATTTAGTAAGTTAAAATGTGTAAAAAATTATCTCT
1 TATAATAAATACTATGTAAATTAGTTAATTATTTAGTAAGTTAAAATGTGTAAAAAATTATCTCT
92862159 CATCAATAAAAAAATTAAATTATTTAAACGAGATTAATAAAATAACA
66 CATCAATAAAAAAATTAAATTATTTAAACGAGATTAATAAAATAACA
92862206 TATAATAAATACTATGTAAATTAGTTAATTATTTAGTAAGTTAAAATGTGTAAAAAATTATCTCT
1 TATAATAAATACTATGTAAATTAGTTAATTATTTAGTAAGTTAAAATGTGTAAAAAATTATCTCT
*
92862271 CATCAATAAAAAAATTAAATTATTTAAACGAGATTAATAAAATAATA
66 CATCAATAAAAAAATTAAATTATTTAAACGAGATTAATAAAATAACA
92862318 TATAAT
1 TATAAT
92862324 CATATTTTAA
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
112 117 1.00
ACGTcount: A:0.51, C:0.06, G:0.07, T:0.37
Consensus pattern (112 bp):
TATAATAAATACTATGTAAATTAGTTAATTATTTAGTAAGTTAAAATGTGTAAAAAATTATCTCT
CATCAATAAAAAAATTAAATTATTTAAACGAGATTAATAAAATAACA
Found at i:92864534 original size:24 final size:25
Alignment explanation
Indices: 92864493--92864548 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
92864483 TATGTATATC
*
92864493 TATATATTTTTCGTATATAT-TATG-
1 TATATATTTTTCGAATAT-TGTATGT
92864517 TATATATGTTTTC-AATATTGTATGT
1 TATATAT-TTTTCGAATATTGTATGT
92864542 TATATAT
1 TATATAT
92864549 ATTATTGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 15 0.54
25 12 0.43
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (25 bp):
TATATATTTTTCGAATATTGTATGT
Found at i:92864629 original size:19 final size:19
Alignment explanation
Indices: 92864605--92864641 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
92864595 CTATTTTATA
*
92864605 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
92864624 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
92864642 ATTATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:92864831 original size:24 final size:24
Alignment explanation
Indices: 92864804--92864849 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
92864794 ATATATTTTT
*
92864804 ATATCATCTTATGTACATATATAA
1 ATATCATCTTATATACATATATAA
* *
92864828 ATATTATGTTATATACATATAT
1 ATATCATCTTATATACATATAT
92864850 GCAATATGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (24 bp):
ATATCATCTTATATACATATATAA
Found at i:92865016 original size:36 final size:36
Alignment explanation
Indices: 92864975--92865043 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
92864965 TTATATATAG
92864975 TATTATTTTCA-TA-TATCATCATATTATTATTATACC
1 TATTATTTTCACTATTATCA-CATATTATT-TTATACC
*
92865011 TATTATTTTCACTATTATCACTTATTATTTTAT
1 TATTATTTTCACTATTATCACATATTATTTTAT
92865044 TTTAATATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 15 0.50
37 10 0.33
38 5 0.17
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (36 bp):
TATTATTTTCACTATTATCACATATTATTTTATACC
Found at i:92865178 original size:25 final size:24
Alignment explanation
Indices: 92865150--92865205 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
92865140 GTTATATTTT
*
92865150 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
92865175 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
92865198 CACTATTA
1 CACTATTA
92865206 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:92875425 original size:72 final size:72
Alignment explanation
Indices: 92875339--92875855 Score: 493
Period size: 72 Copynumber: 7.0 Consensus size: 72
92875329 TATTTTGATG
* * * *
92875339 TTTTTATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
1 TTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCT
92875404 GAGGTAA
66 GAGGTAA
* * * * *
92875411 TTTTTATTTCTATTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
1 TTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCT
92875476 GAGGTAA
66 GAGGTAA
* * * * *
92875483 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGATATGCT
1 TTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCT
92875548 GAGGT-A
66 GAGGTAA
** * ** * *
92875554 TTTTCAATTTCTGTTTTTCAAAAAAAAATCGGCTCATATTACGAGAGGTGAGTTGAGCTTCAGGA
1 TTTT-AATTTCTG-TTTTC----AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
92875619 CACGCTGAGGTAA
60 CACGCTGAGGTAA
* * * * *
92875632 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACCTCAAGACACGTT
1 TTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCT
92875697 GAGGT-A
66 GAGGTAA
* * ** *
92875703 TTTTCAATTTATGTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGTTCACA
1 TTTT-AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACA
*
92875767 TGCTGAGGT-A
62 CGCTGAGGTAA
* * ** **
92875777 TTTTCAATTTCTATCTTTCAAAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGG
1 TTTT-AATTTCTGT-TTTC------AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
*
92875842 GGCACGCTGAGGTA
58 GACACGCTGAGGTA
92875856 TTGGAAATTT
Statistics
Matches: 375, Mismatches: 50, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
71 9 0.02
72 227 0.61
73 5 0.01
74 23 0.06
75 4 0.01
76 5 0.01
77 50 0.13
78 4 0.01
79 10 0.03
81 36 0.10
82 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCT
GAGGTAA
Found at i:92875656 original size:149 final size:146
Alignment explanation
Indices: 92875344--92876186 Score: 834
Period size: 149 Copynumber: 5.6 Consensus size: 146
92875334 TGATGTTTTT
* * *
92875344 ATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
* * * * ** *
92875409 AATTTT-TATTTCT-ATTTTC-AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGAC
66 -ATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
*
92875471 ACGTTGAGGTAATTTCA
130 ACGCTGAGGTAATTTCA
* * * *
92875488 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGATATGCTGAGGT
1 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
** * *
92875553 ATTTTCAATTTCTGTTTTTCAAAAAAAAATCGGCTCATATTACGAGAGGTGAGTTGAGCTTCAGG
66 ATTTTCAATTTCTGTTTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
92875618 ACACGCTGAGGTAATTTCA
128 ACACGCTGAGGTAATTTCA
* * * *
92875637 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
* *
92875702 ATTTTCAATTTATG-TTTTC-AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGTTC
66 ATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---
* *
92875764 ACATGCTGAGGTATTTTCA
128 ACACGCTGAGGTAATTTCA
* * ** ** *
92875783 ATTTCTATCTTTCAAAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 ATTTCTGT-TTTC------AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*** * * **
92875848 CTGAGGTATTGGAAATTTTTGTTTCTTAATTTATGTTTCAAAATTCAACTCATATTGCGAGAAAT
59 CTGAGGTATTTTCAATTTCTGTTT-TTCA---A------AAAA-TCAACTCATATTGCGAGAGGT
* *
92875913 GAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
113 GAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
*
92875947 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAG
1 ATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
* *
92876012 GTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
64 GTATTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* *
92876077 ACACGCTGTGGTAACTTCA
128 ACACGCTGAGGTAATTTCA
* ** *** * * *
92876096 ATTTTTGTTGTAAAAAAAATCAACTCATATTGCGAGAGGCGACTTGAGCCTTAGGTCACACGCTG
1 ATTTCTGTT-T-TCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCTG
*
92876161 AGGTATTTTCAATTTCCGTTTTTCAA
62 AGGTATTTTCAATTTCTGTTTTTCAA
92876187 TTTCTGCCTT
Statistics
Matches: 578, Mismatches: 86, Indels: 64
0.79 0.12 0.09
Matches are distributed among these distances:
143 7 0.01
144 99 0.17
145 5 0.01
146 24 0.04
147 4 0.01
148 5 0.01
149 214 0.37
150 7 0.01
151 28 0.05
153 53 0.09
154 2 0.00
155 2 0.00
156 1 0.00
158 2 0.00
159 63 0.11
163 4 0.01
164 23 0.04
165 4 0.01
166 30 0.05
167 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (146 bp):
ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
ATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTAATTTCA
Found at i:92875752 original size:221 final size:221
Alignment explanation
Indices: 92875356--92876182 Score: 996
Period size: 221 Copynumber: 3.6 Consensus size: 221
92875346 TTCTATTTTC
* ** * * **
92875356 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTTATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* *
92875421 TATTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
66 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
* *
92875486 CAATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGATATGCTGAG
131 CAATTTCTGTTTTCAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAG
*
92875551 GTATTTTCAATTTCTGTTTTTCAAAA
196 GTATTTTCAATTTCTGTCTTTCAAAA
** * *
92875577 AAAAATCGGCTCATATTACGAGAGGTGAGTTGAGCTTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * *
92875642 TGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACCTCAAGACACGTTGAGGTATTTT
66 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
* ** *
92875707 CAATTTATGTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGTTCACATGCT
131 CAATTTCTGTTTTCAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG---ACATGCT
*
92875771 GAGGTATTTTCAATTTCTATCTTTCAAAAAA
193 GAGGTATTTTCAATTTCTGTCTTTC--AAAA
* * *
92875802 AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGGAAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG---T---AA----
*
92875867 TGTTTCTTAATTTATG-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
56 --TTTC--AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
92875931 CGTTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
117 CGTTGAGGTAATTTCAATTTCTGTTTTC--AAAAATCAACTCATATTGTGAGAAATGAGTTGAGC
*
92875996 CTCAAGACATGCTGAGGTATTTTCAATTTTTGTCTTTC--AA
180 CTCAAGACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAA
* * *
92876036 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGTGGTAACTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
** * *** * * * *
92876101 TGTTGTAAAAAAAATCAACTCATATTGCGAGAGGCGACTTGAGCCTTAGGTCACACGCTGAGGTA
66 TGTT-T-TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTA
* *
92876166 TTTTCAATTTCCGTTTT
127 ATTTCAATTTCTGTTTT
92876183 TCAATTTCTG
Statistics
Matches: 519, Mismatches: 60, Indels: 50
0.83 0.10 0.08
Matches are distributed among these distances:
220 8 0.02
221 163 0.31
222 4 0.01
223 63 0.12
225 76 0.15
228 3 0.01
231 3 0.01
234 50 0.10
237 4 0.01
238 102 0.20
239 7 0.01
240 35 0.07
241 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (221 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
CAATTTCTGTTTTCAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAG
GTATTTTCAATTTCTGTCTTTCAAAA
Found at i:92875987 original size:74 final size:74
Alignment explanation
Indices: 92875887--92876182 Score: 376
Period size: 74 Copynumber: 4.0 Consensus size: 74
92875877 TTTATGTTTC
* *
92875887 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
92875952 TGTTTTCAA
66 TGTTTTCAA
* * *
92875961 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
92876026 TGTCTTTCAA
66 TGT-TTTCAA
** * * * *
92876036 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGTGGTAACTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
* *
92876101 TGTTGTAAA
66 TGTTTTCAA
*** * * * *
92876110 AAAAATCAACTCATATTGCGAGAGGCGACTTGAGCCTTAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAATT
*
92876175 TCCGTTTT
64 TCTGTTTT
92876183 TCAATTTCTG
Statistics
Matches: 196, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
74 105 0.54
75 67 0.34
76 24 0.12
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
TGTTTTCAA
Found at i:92876248 original size:93 final size:89
Alignment explanation
Indices: 92876107--92876363 Score: 281
Period size: 93 Copynumber: 2.9 Consensus size: 89
92876097 TTTTTGTTGT
* * *
92876107 AAAAAAAATCAACTCATATTGCGAGAGGCGACTTGAGCCTTAGGTCACACGCTGAGGTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTGA-GTCACACGCTGAGGTATTTTCA
* * **
92876172 ATTTCCGTTTTTCAATTTCTGCCTTTC
65 ATTTCTGTTTTTCAAGTTAAG--TTTC
* **
92876199 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACA-TATCGAGGTATTTT
1 -AAAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCT-GAGTCACACGCT-GAGGTATTTT
** *
92876263 CAAAATCTGCTTTTCAAGTTAAGTTTC
63 CAATTTCTGTTTTTCAAGTTAAGTTTC
*
92876290 ---AAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTTG-GCTCACACGCTGAGCTATTTTC
1 AAAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCC-TGAG-TCACACGCTGAGGTATTTTC
92876351 AATTTCTGTTTTT
64 AATTTCTGTTTTT
92876364 AGAGAGTCAA
Statistics
Matches: 140, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
86 1 0.01
87 61 0.44
88 2 0.01
91 4 0.03
92 1 0.01
93 70 0.50
94 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (89 bp):
AAAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTGAGTCACACGCTGAGGTATTTTCAA
TTTCTGTTTTTCAAGTTAAGTTTC
Found at i:92878158 original size:14 final size:13
Alignment explanation
Indices: 92878139--92878205 Score: 54
Period size: 14 Copynumber: 5.3 Consensus size: 13
92878129 TCATGATTAC
92878139 TATATATTAGTGTA
1 TATATATTA-TGTA
*
92878153 TATATATT-TTTA
1 TATATATTATGTA
92878165 TATATATATATGTA
1 TATATAT-TATGTA
*
92878179 TATGT-TT-T-TA
1 TATATATTATGTA
92878189 -ATATATTTATGTA
1 TATATA-TTATGTA
92878202 TATA
1 TATA
92878206 CTTATGTAGC
Statistics
Matches: 42, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
9 3 0.07
10 2 0.05
11 3 0.07
12 12 0.29
13 4 0.10
14 18 0.43
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (13 bp):
TATATATTATGTA
Found at i:92878192 original size:23 final size:24
Alignment explanation
Indices: 92878153--92878205 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
92878143 TATTAGTGTA
92878153 TATATATTTTTATATATATATATG
1 TATATATTTTTATATATATATATG
* *
92878177 TATATGTTTTTA-ATATATTTATG
1 TATATATTTTTATATATATATATG
92878200 TATATA
1 TATATA
92878206 CTTATGTAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 15 0.58
24 11 0.42
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (24 bp):
TATATATTTTTATATATATATATG
Found at i:92878520 original size:9 final size:9
Alignment explanation
Indices: 92878502--92878541 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
92878492 ATTTCTAATA
92878502 TATATATTT
1 TATATATTT
*
92878511 TATGTATTT
1 TATATATTT
92878520 TATATATTAT
1 TATATATT-T
92878530 GTATATATTT
1 -TATATATTT
92878540 TA
1 TA
92878542 ATGTTATTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 17 0.63
10 2 0.07
11 8 0.30
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (9 bp):
TATATATTT
Found at i:92878538 original size:20 final size:20
Alignment explanation
Indices: 92878436--92878541 Score: 62
Period size: 20 Copynumber: 5.2 Consensus size: 20
92878426 ATCATTATTA
*
92878436 TTTATATATATATGTATGTA-
1 TTTATATAT-TATGTATATAT
*
92878456 TTTATATAGCGTATG-A-ATAGT
1 TTTATATA--TTATGTATATA-T
92878477 TTT-TATATTAT-TATA-AT
1 TTTATATATTATGTATATAT
* *
92878494 TTCTAATATATATATTTTATGTAT
1 TT-T-ATATAT-TA-TGTATATAT
92878518 TTTATATATTATGTATATAT
1 TTTATATATTATGTATATAT
92878538 TTTA
1 TTTA
92878542 ATGTTATTAG
Statistics
Matches: 67, Mismatches: 6, Indels: 26
0.68 0.06 0.26
Matches are distributed among these distances:
17 3 0.04
18 6 0.09
19 3 0.04
20 29 0.43
21 11 0.16
22 7 0.10
23 4 0.06
24 4 0.06
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.57
Consensus pattern (20 bp):
TTTATATATTATGTATATAT
Found at i:92878965 original size:25 final size:24
Alignment explanation
Indices: 92878937--92878992 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
92878927 GTTATATTTT
*
92878937 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
92878962 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
92878985 CACTATTA
1 CACTATTA
92878993 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:92881899 original size:14 final size:12
Alignment explanation
Indices: 92881872--92881896 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92881862 CACAACATGC
92881872 ATGGTATTAAAA
1 ATGGTATTAAAA
92881884 ATGGTATTAAAA
1 ATGGTATTAAAA
92881896 A
1 A
92881897 AATATAATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGGTATTAAAA
Found at i:92882256 original size:12 final size:12
Alignment explanation
Indices: 92882193--92882258 Score: 50
Period size: 12 Copynumber: 5.6 Consensus size: 12
92882183 ATATACACTA
*
92882193 ATATACAATAAT
1 ATATATAATAAT
92882205 A-ATAGTAATAAT
1 ATATA-TAATAAT
*
92882217 A-ATATTAA-AAG
1 ATATA-TAATAAT
*
92882228 CTAT-TAATAAT
1 ATATATAATAAT
92882239 ACTATATAATAAT
1 A-TATATAATAAT
92882252 ATATATA
1 ATATATA
92882259 TAAGCATCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
10 3 0.07
11 7 0.16
12 25 0.58
13 8 0.19
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (12 bp):
ATATATAATAAT
Found at i:92883697 original size:41 final size:42
Alignment explanation
Indices: 92883636--92883763 Score: 195
Period size: 42 Copynumber: 3.1 Consensus size: 42
92883626 AGACACGTGA
*
92883636 CTTCAATCAATTCCACTGAAACTTCAAGGAGATCTATTGTAG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTATTGTAG
* * **
92883678 CTTCGCTTAA-TCCACTGAAACTTCAAGGAGATCTGCTGTAG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTATTGTAG
*
92883719 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTATTGTGG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTATTGTAG
92883761 CTT
1 CTT
92883764 TTAGCTGCCC
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
41 37 0.49
42 38 0.51
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (42 bp):
CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTATTGTAG
Found at i:92884494 original size:43 final size:43
Alignment explanation
Indices: 92884409--92884490 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 43
92884399 AGGAGACAAA
* *
92884409 ATCTGTAATTTTCAGCCTATTACCCTACGGCTTAGGGGTTAAG
1 ATCTGTAAATTTCAACCTATTACCCTACGGCTTAGGGGTTAAG
* * * *
92884452 ATCTGTAAATTT-AACCTGTTACCCTCCTGCTTATGGGTT
1 ATCTGTAAATTTCAACCTATTACCCTACGGCTTAGGGGTT
92884491 TAAGGCTTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 22 0.67
43 11 0.33
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (43 bp):
ATCTGTAAATTTCAACCTATTACCCTACGGCTTAGGGGTTAAG
Found at i:92894845 original size:12 final size:12
Alignment explanation
Indices: 92894828--92894852 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92894818 CACAACATGC
92894828 ATGGTATTAAAA
1 ATGGTATTAAAA
92894840 ATGGTATTAAAA
1 ATGGTATTAAAA
92894852 A
1 A
92894853 AACATAATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGGTATTAAAA
Found at i:92895022 original size:3 final size:3
Alignment explanation
Indices: 92895016--92895057 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
92895006 ACACTACTAT
* *
92895016 ATA ATA ATA ATA ATA ATA GTG ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
92895058 TAGAAATACA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Done.