Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 276 of 362
Found at i:93207873 original size:96 final size:96
Alignment explanation
Indices: 93207679--93208040 Score: 579
Period size: 96 Copynumber: 3.8 Consensus size: 96
93207669 CCCTTCGGGA
* * * ** *
93207679 CTTATCACATTTATACACTTTCACATCCATCACGTTC-GCCACTCGGCCC-TGTCAC--ATATAT
1 CTTATCACATATATACACTTTCACATTCATCAC-ATCGGCCA-TTAGCCCTTATCACATATATAT
* *
93207740 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATTGGCCATTCGGC
93207773 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCCTTATCACATATATATAC
93207838 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
93207869 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCCTTATCACATATATATAC
*
93207934 ACTTTCACATTCATCACATTGGCCATTCAGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
93207965 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCCTTATCACATATATATAC
93208030 ACTTTCACATT
66 ACTTTCACATT
93208041 TATTCAAATA
Statistics
Matches: 254, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
93 7 0.03
94 40 0.16
96 207 0.81
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:93207977 original size:143 final size:141
Alignment explanation
Indices: 93207679--93208040 Score: 564
Period size: 143 Copynumber: 2.5 Consensus size: 141
93207669 CCCTTCGGGA
* * * * * * *
93207679 CTTATCACATTTATACACTTTCACATCCATCACGTTCGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
93207744 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
93207809 GGCCATTAGCC
131 GGCCATTAGCC
93207820 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
93207885 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
*
93207950 CATTGGCCATTCAG-C
127 CATCGGCCATT-AGCC
* *
93207965 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
93208030 ACTTTCACATT
64 ACTTTCACATT
93208041 TATTCAAATA
Statistics
Matches: 204, Mismatches: 10, Indels: 10
0.91 0.04 0.04
Matches are distributed among these distances:
141 8 0.04
143 132 0.65
145 62 0.30
146 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGCC
Found at i:93215185 original size:63 final size:63
Alignment explanation
Indices: 93215105--93215287 Score: 174
Period size: 63 Copynumber: 2.8 Consensus size: 63
93215095 AGACATTATG
* *
93215105 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAACAAGAGAGCTACGAGATAA
* * * * *
93215168 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTA-ACAAGAGAGCTACGAGA
93215232 TAA
61 TAA
* * * * *
93215235 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGTGTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGT-AACAAGAGAGC
93215288 CGAACTATAT
Statistics
Matches: 96, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
63 41 0.43
64 3 0.03
65 4 0.04
66 27 0.28
67 21 0.22
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAACAAGAGAGCTACGAGATAA
Found at i:93219587 original size:68 final size:64
Alignment explanation
Indices: 93219471--93219729 Score: 231
Period size: 68 Copynumber: 3.9 Consensus size: 64
93219461 TGGATGATAC
** * * *
93219471 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTGTACAAGAGAGCTAC-
93219536 AG
64 -G
* * **
93219538 ACATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAAACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTGTACAAGAGAGCTA
93219602 CG
63 CG
* * * *
93219604 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAG-G-ACACCATGTAG-ACAAGAGAG
1 AGATATATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGT-GTACAAGAGAG
93219666 CTACG
60 CTACG
* * *
93219671 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGTGTACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTGTACAAGAGAGC
93219730 CGAACTATAT
Statistics
Matches: 156, Mismatches: 23, Indels: 30
0.75 0.11 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 20 0.13
65 5 0.03
66 19 0.12
67 34 0.22
68 51 0.33
69 1 0.01
70 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTGTACAAGAGAGCTACG
Found at i:93224072 original size:27 final size:27
Alignment explanation
Indices: 93224042--93224096 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
93224032 ATTTAAGGGG
93224042 TCATACTCTAGGGTTAAAACACATTTT
1 TCATACTCTAGGGTTAAAACACATTTT
*
93224069 TCATACTCTAGGGTTAAAGCACATTTT
1 TCATACTCTAGGGTTAAAACACATTTT
93224096 T
1 T
93224097 TGAAACTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (27 bp):
TCATACTCTAGGGTTAAAACACATTTT
Found at i:93233255 original size:21 final size:20
Alignment explanation
Indices: 93233231--93233271 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
93233221 ATATAATATA
*
93233231 TATTCCATTTATGCTTGTTTT
1 TATT-CATTTATACTTGTTTT
*
93233252 TATTCTTTTATACTTGTTTT
1 TATTCATTTATACTTGTTTT
93233272 ATTTATTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.15, C:0.12, G:0.07, T:0.66
Consensus pattern (20 bp):
TATTCATTTATACTTGTTTT
Found at i:93241960 original size:29 final size:29
Alignment explanation
Indices: 93241922--93241981 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
93241912 ATGAATATAT
*
93241922 TGTGATTTGGGCCGGATGGGCCATATAAA
1 TGTGAATTGGGCCGGATGGGCCATATAAA
* *
93241951 TGTGAATTGGGCCTGATGGGCCATATGAA
1 TGTGAATTGGGCCGGATGGGCCATATAAA
93241980 TG
1 TG
93241982 AGTTTGGGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.23, C:0.13, G:0.35, T:0.28
Consensus pattern (29 bp):
TGTGAATTGGGCCGGATGGGCCATATAAA
Found at i:93256510 original size:25 final size:26
Alignment explanation
Indices: 93256461--93256510 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
93256451 CTTTTCGTTT
** *
93256461 TCTTTTCATTTTTAGTTTAGGTTTTC
1 TCTTTTCATTTTTAGAGTAGATTTTC
93256487 TCTTTT-ATTTTTAGAGTAGATTTT
1 TCTTTTCATTTTTAGAGTAGATTTT
93256511 ATTATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.16, C:0.08, G:0.12, T:0.64
Consensus pattern (26 bp):
TCTTTTCATTTTTAGAGTAGATTTTC
Found at i:93262470 original size:55 final size:55
Alignment explanation
Indices: 93262362--93262473 Score: 138
Period size: 55 Copynumber: 2.0 Consensus size: 55
93262352 ATTAGGGTTT
* * * *
93262362 AAGGATACCATGTAAGACTATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGATAAGGTTTATAAGGC
* *
93262417 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGATAA-GTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGATAAGGTT--TATAAGGC
93262472 AA
1 AA
93262474 ATGTCCCATG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 3 0.06
54 7 0.14
55 39 0.80
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGATAAGGTTTATAAGGC
Found at i:93262555 original size:49 final size:49
Alignment explanation
Indices: 93262501--93262594 Score: 143
Period size: 49 Copynumber: 1.9 Consensus size: 49
93262491 TTCATAAGGC
* * * *
93262501 AAGGATACCATGTAAGGCCATGTCGAGACATGGCAATGGTAAGTTTCAA
1 AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTTTCAA
*
93262550 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGTT
1 AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTT
93262595 ACCCGTGTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (49 bp):
AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTTTCAA
Found at i:93262805 original size:16 final size:16
Alignment explanation
Indices: 93262784--93262814 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93262774 ATAAATTAAA
93262784 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
93262800 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
93262815 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:93268530 original size:17 final size:16
Alignment explanation
Indices: 93268495--93268555 Score: 61
Period size: 17 Copynumber: 3.7 Consensus size: 16
93268485 ATAGATACAA
*
93268495 TATTTTTATTTCT-TT
1 TATTTTTATTTTTGTT
93268510 TATTTTTAATTTTTGTT
1 TATTTTT-ATTTTTGTT
*
93268527 TATTTTTGTTTATTTGTT
1 TATTTTT-ATT-TTTGTT
*
93268545 TATTTTCATTT
1 TATTTTTATTT
93268556 CATTTTGTAG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
15 7 0.18
16 6 0.16
17 13 0.34
18 12 0.32
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (16 bp):
TATTTTTATTTTTGTT
Found at i:93268532 original size:22 final size:21
Alignment explanation
Indices: 93268495--93268555 Score: 56
Period size: 22 Copynumber: 3.0 Consensus size: 21
93268485 ATAGATACAA
* *
93268495 TATTTTTATTTCTTTTATTTT
1 TATTTTTGTTTATTTTATTTT
*
93268516 TAATTTTTGTTTATTTT-TGTT
1 T-ATTTTTGTTTATTTTATTTT
93268537 TA--TTTGTTTATTTTCATTT
1 TATTTTTGTTTATTTT-ATTT
93268556 CATTTTGTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
18 12 0.36
20 3 0.09
21 5 0.15
22 13 0.39
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (21 bp):
TATTTTTGTTTATTTTATTTT
Found at i:93268533 original size:11 final size:10
Alignment explanation
Indices: 93268495--93268550 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
93268485 ATAGATACAA
*
93268495 TATTTTTATT
1 TATTTTTGTT
* *
93268505 TCTTTTATTTT
1 TATTTT-TGTT
93268516 TAATTTTTGTT
1 T-ATTTTTGTT
93268527 TATTTTTGTT
1 TATTTTTGTT
93268537 TA--TTTGTT
1 TATTTTTGTT
93268545 TATTTT
1 TATTTT
93268551 CATTTCATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 8 0.21
10 18 0.47
11 8 0.21
12 4 0.11
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (10 bp):
TATTTTTGTT
Found at i:93268542 original size:18 final size:17
Alignment explanation
Indices: 93268495--93268550 Score: 62
Period size: 18 Copynumber: 3.4 Consensus size: 17
93268485 ATAGATACAA
*
93268495 TATTTTT-ATTTCT-TT
1 TATTTTTAATTTTTGTT
93268510 TATTTTTAATTTTTGTT
1 TATTTTTAATTTTTGTT
**
93268527 TATTTTTGTTTATTTGTT
1 TATTTTTAATT-TTTGTT
93268545 TATTTT
1 TATTTT
93268551 CATTTCATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
15 7 0.20
16 5 0.14
17 11 0.31
18 12 0.34
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (17 bp):
TATTTTTAATTTTTGTT
Found at i:93278951 original size:40 final size:40
Alignment explanation
Indices: 93278899--93279088 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
93278889 ATAACCACAA
* * * *
93278899 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
93278939 GCACGAATGCCTTCGGGTCTTAGCCTGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
93278979 GCACAAATGCCTTCGGGTCTTAGCCCGAATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
93279019 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
93279059 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
93279089 GTATTCAAAT
Statistics
Matches: 132, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
40 128 0.97
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:93282234 original size:18 final size:17
Alignment explanation
Indices: 93282210--93282252 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
93282200 CAATAAGGCG
* *
93282210 TATTTGGATTTTATTTT
1 TATTTGGATTTAAATTT
93282227 TCATTTGGGATTTAAATTT
1 T-ATTT-GGATTTAAATTT
93282246 TATTTGG
1 TATTTGG
93282253 TTATAACTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 3 0.14
18 8 0.36
19 11 0.50
ACGTcount: A:0.21, C:0.02, G:0.16, T:0.60
Consensus pattern (17 bp):
TATTTGGATTTAAATTT
Found at i:93290904 original size:27 final size:27
Alignment explanation
Indices: 93290870--93291080 Score: 192
Period size: 27 Copynumber: 7.8 Consensus size: 27
93290860 CCTCAATTTA
*
93290870 TAAAATTACCAAAATACCCCTGGTTTA
1 TAAAATTACCAAAATACCCCTGGTTTG
* **
93290897 TAAAATTACTAAAATACCCCCAGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* **
93290924 TAAAATTACAAAAATACCATTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * * *
93290951 TAAAATTATCGAAATACCCCCGATTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * * *
93290978 TAAAATTATCGAAATACCTCC-AGATTG
1 TAAAATTACCAAAATACC-CCTGGTTTG
* *
93291005 TAAAATTATCGAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
** ** *
93291032 TAAAATTACTGAAATA-CCCTTATAGTG
1 TAAAATTACCAAAATACCCCTGGT-TTG
93291059 TAAAATTACCAAAATACCCCTG
1 TAAAATTACCAAAATACCCCTG
93291081 TAGGGTAAAA
Statistics
Matches: 151, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
26 7 0.05
27 138 0.91
28 6 0.04
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGGTTTG
Found at i:93291061 original size:81 final size:81
Alignment explanation
Indices: 93290870--93291078 Score: 217
Period size: 81 Copynumber: 2.6 Consensus size: 81
93290860 CCTCAATTTA
* * * * * * * *
93290870 TAAAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCCCAGTTTGTAAAATTACAA
1 TAAAATTATCGAAATACCCCCGATGTGTAAAATTACCAAAATACCCCCAGATTGTAAAATTACAA
*
93290935 AAATACCATTGGTTTG
66 AAATACCACTGGTTTG
* * * *
93290951 TAAAATTATCGAAATACCCCCGATTTGTAAAATTATCGAAATACCTCCAGATTGTAAAATTATC-
1 TAAAATTATCGAAATACCCCCGATGTGTAAAATTACCAAAATACCCCCAGATTGTAAAATTA-CA
* *
93291015 GAAATACCCCTGGTTTG
65 AAAATACCACTGGTTTG
**
93291032 TAAAATTA-CTGAAATA-CCCTTATAGTGTAAAATTACCAAAATACCCC
1 TAAAATTATC-GAAATACCCCCGAT-GTGTAAAATTACCAAAATACCCC
93291079 TGTAGGGTAA
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
80 6 0.06
81 99 0.93
82 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (81 bp):
TAAAATTATCGAAATACCCCCGATGTGTAAAATTACCAAAATACCCCCAGATTGTAAAATTACAA
AAATACCACTGGTTTG
Found at i:93293980 original size:102 final size:102
Alignment explanation
Indices: 93293800--93294014 Score: 358
Period size: 102 Copynumber: 2.1 Consensus size: 102
93293790 ACCTTAGTGG
** * *
93293800 TGTTTTGAATGTGAAATTGGTATGTTTGATTTAGCATAATGAAATGTCATGAGCATGATAGATGT
1 TGTTTTGGTTGTGAAATTGGTATGTTTGATTTAGCATAATAAAATGTCATGAACATGATAGATGT
* *
93293865 TTGTATTGTATTGACATGTGTTGGCCATGATTGTAGA
66 TGGTATTGCATTGACATGTGTTGGCCATGATTGTAGA
* *
93293902 TGTTTTGGTTGTGCAATTGGTATGTTTGATTTGGCATAATAAAATGTCATGAACATGATAGATGT
1 TGTTTTGGTTGTGAAATTGGTATGTTTGATTTAGCATAATAAAATGTCATGAACATGATAGATGT
93293967 TGGTATTGCATTGACATGTGTTGGCCATGATTGTAGA
66 TGGTATTGCATTGACATGTGTTGGCCATGATTGTAGA
93294004 TGTTTTGGTTG
1 TGTTTTGGTTG
93294015 CCTAAGTGTA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 105 1.00
ACGTcount: A:0.25, C:0.07, G:0.27, T:0.42
Consensus pattern (102 bp):
TGTTTTGGTTGTGAAATTGGTATGTTTGATTTAGCATAATAAAATGTCATGAACATGATAGATGT
TGGTATTGCATTGACATGTGTTGGCCATGATTGTAGA
Found at i:93302030 original size:26 final size:26
Alignment explanation
Indices: 93302001--93302151 Score: 110
Period size: 27 Copynumber: 5.7 Consensus size: 26
93301991 TTAGTTTACC
*
93302001 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTACTCAAATACCCCCAGTTGTA
*
93302027 AAATTAC-CAAAGTACCCCCAGTTTATA
1 AAATTACTCAAA-TACCCCCAG-TTGTA
* * * *
93302054 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATA-CCCCCAGTTGTA
* *
93302081 AAATTA-TCGAAATACCCTCAGTTTGCA
1 AAATTACTC-AAATACCCCCAG-TTGTA
* * * *
93302108 AATTTACTAAAATACCCTCGACTTGTA
1 AAATTACTCAAATACCC-CCAGTTGTA
93302135 AAATTA-TCAAAGTACCC
1 AAATTACTCAAA-TACCC
93302152 TCGATTTATA
Statistics
Matches: 96, Mismatches: 20, Indels: 17
0.72 0.15 0.13
Matches are distributed among these distances:
25 3 0.03
26 24 0.25
27 59 0.61
28 10 0.10
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (26 bp):
AAATTACTCAAATACCCCCAGTTGTA
Found at i:93302103 original size:54 final size:54
Alignment explanation
Indices: 93302022--93302400 Score: 189
Period size: 54 Copynumber: 7.0 Consensus size: 54
93302012 ATACCCCCAG
* * * * *
93302022 TTGTAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTATCAAAGTACCCTCAGTTTATAAAATTACCAAAATACCCTCGAC
** * *
93302076 TTGTAAAATTATCGAAA-TACCCTCAGTTTGCAAATTTACTAAAATACCCTCGAC
1 TTGTAAAATTATC-AAAGTACCCTCAGTTTATAAAATTACCAAAATACCCTCGAC
* * **** *
93302130 TTGTAAAATTATCAAAGTACCCTC-GATTTATAGAATTATCGTTTTACCCTCGAT
1 TTGTAAAATTATCAAAGTACCCTCAG-TTTATAAAATTACCAAAATACCCTCGAC
** * *** * * * ****
93302184 TTAAAAAATTACCATTTTACCTTTAGTTTACAAAATTACCGTTTTACCCTCGA-
1 TTGTAAAATTATCAAAGTACCCTCAGTTTATAAAATTACCAAAATACCCTCGAC
* * * ** * * *
93302237 TTGTGAAATTACTGAAA-TACCC-CTGTAGGATAGAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTA-TCAAAGTACCCTCAGT-TTATAAAATTACCAAAATACCCTCGA-C
* * * * * *
93302291 TTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCGAAATACCCTCAAT
1 TTGTAAAATTATCAAAGTACCCTC-AGTTTATAAAATTACCAAAATACCCTCGAC
* * * * * * *
93302345 TTGTAAAATTACCAAAATACCC-CTGATTTACAAAATTACAAAAATTCCCTTGAC
1 TTGTAAAATTATCAAAGTACCCTCAG-TTTATAAAATTACCAAAATACCCTCGAC
93302399 TT
1 TT
93302401 TCTAAAAATT
Statistics
Matches: 244, Mismatches: 69, Indels: 24
0.72 0.20 0.07
Matches are distributed among these distances:
52 4 0.02
53 34 0.14
54 198 0.81
55 8 0.03
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (54 bp):
TTGTAAAATTATCAAAGTACCCTCAGTTTATAAAATTACCAAAATACCCTCGAC
Found at i:93302152 original size:27 final size:26
Alignment explanation
Indices: 93302022--93302169 Score: 120
Period size: 27 Copynumber: 5.5 Consensus size: 26
93302012 ATACCCCCAG
* *
93302022 TTGTAAAATTACCAAAGTACCC-CCAGT
1 TTGTAAAATTATCAAA-TACCCTCGA-T
* * *
93302049 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTA-TCAAATACCCTCGAT
93302076 TTGTAAAATTATCGAAATACCCTC-AGT
1 TTGTAAAATTATC-AAATACCCTCGA-T
* * * *
93302103 TTGCAAATTTACTAAAATACCCTCGAC
1 TTGTAAAATTA-TCAAATACCCTCGAT
93302130 TTGTAAAATTATCAAAGTACCCTCGAT
1 TTGTAAAATTATCAAA-TACCCTCGAT
* *
93302157 TTATAGAATTATC
1 TTGTAAAATTATC
93302170 GTTTTACCCT
Statistics
Matches: 98, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
26 6 0.06
27 83 0.85
28 9 0.09
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTATCAAATACCCTCGAT
Found at i:93302177 original size:27 final size:27
Alignment explanation
Indices: 93302147--93302238 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
93302137 ATTATCAAAG
* * *
93302147 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTAAAAAATTACCGTTT
*
93302174 TACCCTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTAAAAAATTACCGTTT
** *
93302201 TA-CCTTTAGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTAAAAAATTACCGTTT
93302228 TACCCTCGATT
1 TACCCTCGATT
93302239 GTGAAATTAC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.08
27 45 0.85
28 4 0.08
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTAAAAAATTACCGTTT
Found at i:93302357 original size:81 final size:81
Alignment explanation
Indices: 93302001--93302477 Score: 282
Period size: 81 Copynumber: 5.9 Consensus size: 81
93301991 TTAGTTTACC
* * * * * *
93302001 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCCAA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAA
*
93302065 ATATCCTCGATTTGTA
66 ATACCCTCGATTTGTA
* * * * * * * * *
93302081 AAATTATCGAAATACCCTCAGTTTGCAAATTTACTAAAATA-CCCTCGACTTGTAAAATTATCAA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAG-TTTATAAAATTACCAA
* *
93302145 AGTACCCTCGATTTATA
65 AATACCCTCGATTTGTA
* * *** * ** *** ** * ***
93302162 GAATTATCGTTTTACCCTCGATTTAAAAAATTACCATTTTACCTTTAGTTTACAAAATTACCGTT
1 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAA
* *
93302227 TTACCCTCGA-TTGTG
66 ATACCCTCGATTTGTA
* ** ** * *
93302242 AAATTACTGAAATACCC-CTGTAGGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAATTACCGAAATACCCTCAATTTG-TAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAA
*
93302306 AATACCC-CTAGTTTGTA
65 AATACCCTCGA-TTTGTA
* *
93302323 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTACAAA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAG-TTTATAAAATTACCAA
* * *
93302387 AATTCCCTTGACTTTCTAA
65 AATACCCTCGA-TTTGT-A
** ** *** ** * * * *
93302406 AAATTATAGAAATACTATTGGTTTACAAAATTACTAAAATACCCTTAGTTTATAGATTTACCAAA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAA
*
93302471 ACACCCT
66 ATACCCT
93302478 TGTAGGATGA
Statistics
Matches: 285, Mismatches: 101, Indels: 19
0.70 0.25 0.05
Matches are distributed among these distances:
79 4 0.01
80 67 0.24
81 148 0.52
82 11 0.04
83 54 0.19
84 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.32
Consensus pattern (81 bp):
AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAA
ATACCCTCGATTTGTA
Found at i:93302383 original size:27 final size:27
Alignment explanation
Indices: 93302270--93302368 Score: 164
Period size: 27 Copynumber: 3.7 Consensus size: 27
93302260 TGTAGGATAG
93302270 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
93302297 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
93302324 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
93302351 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
93302369 GATTTACAAA
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 4 0.06
27 59 0.88
28 4 0.06
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:93302388 original size:27 final size:28
Alignment explanation
Indices: 93302270--93302389 Score: 140
Period size: 27 Copynumber: 4.4 Consensus size: 28
93302260 TGTAGGATAG
*
93302270 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGAGTTTGCAA
*
93302297 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGAGTTTGCAA
* * * *
93302324 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCTGAGTTTGCAA
*
93302351 AATTACCAAAATACCCCTGA-TTTACAA
1 AATTACCAAAATACCCCTGAGTTTGCAA
*
93302378 AATTACAAAAAT
1 AATTACCAAAAT
93302390 TCCCTTGACT
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
26 4 0.05
27 75 0.89
28 5 0.06
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.28
Consensus pattern (28 bp):
AATTACCAAAATACCCCTGAGTTTGCAA
Found at i:93302456 original size:27 final size:27
Alignment explanation
Indices: 93302270--93302478 Score: 136
Period size: 27 Copynumber: 7.7 Consensus size: 27
93302260 TGTAGGATAG
* **
93302270 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTACAA
* **
93302297 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTACAA
* * * **
93302324 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTACAA
*
93302351 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCTTAG-TTTACAA
* * *
93302378 AATTACAAAAATTCCCTTGACTTT-CTAAA
1 AATTACCAAAATACCCTT-AGTTTAC--AA
* ** *
93302407 AATTA-TAGAAATACTATTGGTTTACAA
1 AATTACCA-AAATACCCTTAGTTTACAA
* * *
93302434 AATTACTAAAATACCCTTAGTTTATAG
1 AATTACCAAAATACCCTTAGTTTACAA
* *
93302461 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
93302479 GTAGGATGAA
Statistics
Matches: 146, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
27 122 0.84
28 9 0.06
29 15 0.10
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTACAA
Found at i:93302540 original size:27 final size:27
Alignment explanation
Indices: 93302497--93302570 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
93302487 AAATGACTAA
*
93302497 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
93302524 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
93302551 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
93302571 TGATGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:93303422 original size:25 final size:24
Alignment explanation
Indices: 93303384--93303453 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 24
93303374 AGGAAGTGCT
93303384 AAAAGGG-TTCTGCCCTAGTTTACC
1 AAAAGGGCTT-TGCCCTAGTTTACC
* *
93303408 GAAAAGGGCTTTGCCTTAGTTTATC
1 -AAAAGGGCTTTGCCCTAGTTTACC
*
93303433 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCTAGTT
93303454 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 36 0.92
26 2 0.05
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGTTTACC
Found at i:93303466 original size:24 final size:23
Alignment explanation
Indices: 93303409--93303480 Score: 63
Period size: 25 Copynumber: 3.0 Consensus size: 23
93303399 TAGTTTACCG
**
93303409 AAAAGGGCTTTGCCTTAGTTTATC
1 AAAAGGGCTTTGCCCCAG-TTATC
*
93303433 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
93303457 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
93303481 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
23 4 0.10
24 13 0.32
25 23 0.57
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:93303660 original size:42 final size:42
Alignment explanation
Indices: 93303601--93303730 Score: 233
Period size: 42 Copynumber: 3.1 Consensus size: 42
93303591 TAGTCTCCCC
93303601 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
93303643 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* * *
93303685 AAATGGGCTTGCATATATCCATTAACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
93303727 AAAT
1 AAAT
93303731 AGGCCTAAGG
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 85 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:93303794 original size:31 final size:31
Alignment explanation
Indices: 93303758--93303903 Score: 258
Period size: 31 Copynumber: 4.7 Consensus size: 31
93303748 CGTTTACAGT
*
93303758 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
93303789 AAAGGCTTCGGCCCAGTGATATGATTTATTA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
93303820 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
93303851 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
93303882 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
93303904 TCAAGACTAA
Statistics
Matches: 111, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 5 0.05
31 106 0.95
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:93305998 original size:75 final size:75
Alignment explanation
Indices: 93305889--93306053 Score: 224
Period size: 75 Copynumber: 2.2 Consensus size: 75
93305879 CTGACGGAAG
* * * * *
93305889 TTGCATCCATCGCTAGTCAGATAAACCGACGAAATAATTAGTGAGCGCAGCTCTGGCCGGATAAA
1 TTGCAGCCAACGCTAGTCAGATAAACCAACGAAATAATTAGTGAGCCCAGCTCTAGCCGGATAAA
93305954 CCAACGATAT
66 CCAACGATAT
* * **
93305964 TTG-AGCACAACGCTAGTCAGATAAACCAATGAAATAATTAGTGAGCCCGGCTCTAGTTGGATAA
1 TTGCAGC-CAACGCTAGTCAGATAAACCAACGAAATAATTAGTGAGCCCAGCTCTAGCCGGATAA
*
93306028 ACCAATGATAT
65 ACCAACGATAT
93306039 TTGCAGCCAACGCTA
1 TTGCAGCCAACGCTA
93306054 ATCGAATAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
74 2 0.03
75 73 0.94
76 3 0.04
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (75 bp):
TTGCAGCCAACGCTAGTCAGATAAACCAACGAAATAATTAGTGAGCCCAGCTCTAGCCGGATAAA
CCAACGATAT
Found at i:93306020 original size:40 final size:40
Alignment explanation
Indices: 93305901--93306032 Score: 121
Period size: 40 Copynumber: 3.4 Consensus size: 40
93305891 GCATCCATCG
* *
93305901 CTAGTCAGATAAACCGACGAAATAATTAGTGAGCGCAGCT
1 CTAGTCAGATAAACCAACGAAATAATTAGTGAGCACAGCT
* * * * *
93305941 CTGGCCGGATAAACCAACG--AT-ATT--TGAGCACAACG
1 CTAGTCAGATAAACCAACGAAATAATTAGTGAGCACAGCT
* * *
93305976 CTAGTCAGATAAACCAATGAAATAATTAGTGAGCCCGGCT
1 CTAGTCAGATAAACCAACGAAATAATTAGTGAGCACAGCT
**
93306016 CTAGTTGGATAAACCAA
1 CTAGTCAGATAAACCAA
93306033 TGATATTTGC
Statistics
Matches: 70, Mismatches: 17, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
35 23 0.33
37 5 0.07
38 5 0.07
40 37 0.53
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.20
Consensus pattern (40 bp):
CTAGTCAGATAAACCAACGAAATAATTAGTGAGCACAGCT
Found at i:93307017 original size:11 final size:11
Alignment explanation
Indices: 93307001--93307029 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
93306991 TTTCGAAAAG
93307001 AAGAAAATTAA
1 AAGAAAATTAA
93307012 AAG-AAATTAA
1 AAGAAAATTAA
93307022 AAGAAAAT
1 AAGAAAAT
93307030 ATGCTTGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.17
Consensus pattern (11 bp):
AAGAAAATTAA
Found at i:93313927 original size:75 final size:75
Alignment explanation
Indices: 93313768--93313927 Score: 205
Period size: 75 Copynumber: 2.1 Consensus size: 75
93313758 GGTGTTACAG
* * *
93313768 TTTGCACCCAGTGCTAATCAGATAAACTGACGAAATAATTAGTGAGTGCAACTCTAGTTCAATAA
1 TTTGCGCCCAGCGCTAATCAGATAAACTGACGAAATAATTAGTGAGTCCAACTCTAGTTCAATAA
* *
93313833 ACCAATGATG
66 ACCAACGATA
* * * **
93313843 TTTGTGCCCAGCGCTAGTCAGATAAACTGACGAAATAATTAGTGAG-CCTAGCTCTAGTTGGATA
1 TTTGCGCCCAGCGCTAATCAGATAAACTGACGAAATAATTAGTGAGTCC-AACTCTAGTTCAATA
*
93313907 ATCCAACGATA
65 AACCAACGATA
93313918 TTTGCGCCCA
1 TTTGCGCCCA
93313928 ATGTTAATAG
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
74 1 0.01
75 71 0.99
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (75 bp):
TTTGCGCCCAGCGCTAATCAGATAAACTGACGAAATAATTAGTGAGTCCAACTCTAGTTCAATAA
ACCAACGATA
Found at i:93317428 original size:39 final size:39
Alignment explanation
Indices: 93317321--93317455 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
93317311 GACCTCGAGT
* * *
93317321 CGATGAGACACTGGGTGTC-ACTAAATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAACT--ATTACTTCGGCTAG-TC
* ** ** *
93317362 CAATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
93317400 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
93317439 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
93317456 CCATATTGGT
Statistics
Matches: 74, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 3 0.04
41 14 0.19
42 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:93319051 original size:12 final size:12
Alignment explanation
Indices: 93319034--93319061 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
93319024 ACAGTTTTAG
93319034 CACGGCCTAGCA
1 CACGGCCTAGCA
93319046 CACGGCCTAGCA
1 CACGGCCTAGCA
93319058 CACG
1 CACG
93319062 AGCGTGTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.43, G:0.25, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:93321355 original size:36 final size:36
Alignment explanation
Indices: 93321307--93321937 Score: 649
Period size: 36 Copynumber: 17.3 Consensus size: 36
93321297 AGGAACACTA
*
93321307 ATTCTACT-AAAGTGCTCAATGAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
*
93321342 ATACTACTGAAAGTGCTCAACGAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* * * * * *
93321378 ATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATG
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* *
93321415 ATTCTACTGAAAGTGCTCAAAAGACCAATATCTACTG
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* * *
93321452 GTTCTATTGAAAGTGCTCAACAAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* * * * *
93321488 ATGCTACTGAATGTGCTTAAACGAGCAATGTCTATTG
1 ATTCTACTGAAAGTGC-TCAACGAGCAATATCTACTG
*
93321525 ATTCTACTG-AAGTGCTCAACCAAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAA-CGAGCAATATCTACTG
*
93321561 ATACTACTGAAAGTGCTCAACGAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* * * * * *
93321597 ATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATG
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* *
93321634 ATTCTACTGAAAGTGCTCAAAAGACCAATATCTACTG
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* * *
93321671 GTTCTATTGAAAGTGCTCAACAAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* * * * *
93321707 ATCCTACTGAATGTGCTTAAACGAGCAATGTCTATTG
1 ATTCTACTGAAAGTGC-TCAACGAGCAATATCTACTG
* *
93321744 ATTCTACTG-AAGTGCTTAACCAAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAA-CGAGCAATATCTACTG
* * *
93321780 ATTCTACTAAAAGTGCTCAACGATCAATATCAACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* * * * * *
93321816 ATCCTACTGAATGTCCTCAAACGAGAAATGTCTACTA
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* *
93321853 ATTCTACTG-AAGTGCTCAAACAAGCAATATCTACTA
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* *
93321889 ATTCTACTGAATAGTTGCTCAAATGAGCAATATCCACTG
1 ATTCTACTGAA-AG-TGCTC-AACGAGCAATATCTACTG
*
93321928 ATTATACTGA
1 ATTCTACTGA
93321938 TTGTTTGATT
Statistics
Matches: 488, Mismatches: 95, Indels: 22
0.81 0.16 0.04
Matches are distributed among these distances:
35 13 0.03
36 237 0.49
37 207 0.42
38 2 0.00
39 29 0.06
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (36 bp):
ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
Found at i:93321429 original size:73 final size:73
Alignment explanation
Indices: 93321307--93321937 Score: 691
Period size: 73 Copynumber: 8.6 Consensus size: 73
93321297 AGGAACACTA
* ** *
93321307 ATTCTACT-AAAGTGCTC-AATGAGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAAT
1 ATTCTACTGAATGTGCTCAAACAAGCAATATCTACTGATTCTACTGAAAGTGCTCAACGAGCAAT
93321370 ATCTACTG
66 ATCTACTG
* * * * * *
93321378 ATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAAAGACCAA
1 ATTCTACTGAATGTGCTCAAACAAGCAATATCTACTGATTCTACTGAAAGTGCTC-AACGAGCAA
93321443 TATCTACTG
65 TATCTACTG
* * * * * *
93321452 GTTCTATTGAAAGTGCTC-AACAAGCAATATCTACTGATGCTACTGAATGTGCTTAAACGAGCAA
1 ATTCTACTGAATGTGCTCAAACAAGCAATATCTACTGATTCTACTGAAAGTGC-TCAACGAGCAA
* *
93321516 TGTCTATTG
65 TATCTACTG
* *
93321525 ATTCTACTGAA-GTGCTCAACCAAGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAAT
1 ATTCTACTGAATGTGCTCAAACAAGCAATATCTACTGATTCTACTGAAAGTGCTCAACGAGCAAT
93321589 ATCTACTG
66 ATCTACTG
* * * * * *
93321597 ATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAAAGACCAA
1 ATTCTACTGAATGTGCTCAAACAAGCAATATCTACTGATTCTACTGAAAGTGCTC-AACGAGCAA
93321662 TATCTACTG
65 TATCTACTG
* * * * * *
93321671 GTTCTATTGAAAGTGCTC-AACAAGCAATATCTACTGATCCTACTGAATGTGCTTAAACGAGCAA
1 ATTCTACTGAATGTGCTCAAACAAGCAATATCTACTGATTCTACTGAAAGTGC-TCAACGAGCAA
* *
93321735 TGTCTATTG
65 TATCTACTG
* * * *
93321744 ATTCTACTGAA-GTGCTTAACCAAGCAATATCTACTGATTCTACTAAAAGTGCTCAACGATCAAT
1 ATTCTACTGAATGTGCTCAAACAAGCAATATCTACTGATTCTACTGAAAGTGCTCAACGAGCAAT
*
93321808 ATCAACTG
66 ATCTACTG
* * * * * * *
93321816 ATCCTACTGAATGTCCTCAAACGAGAAATGTCTACTAATTCTACTG-AAGTGCTCAAACAAGCAA
1 ATTCTACTGAATGTGCTCAAACAAGCAATATCTACTGATTCTACTGAAAGTGCTC-AACGAGCAA
*
93321880 TATCTACTA
65 TATCTACTG
** * *
93321889 ATTCTACTGAATAGTTGCTCAAATGAGCAATATCCACTGATTATACTGA
1 ATTCTACTGAAT-G-TGCTCAAACAAGCAATATCTACTGATTCTACTGA
93321938 TTGTTTGATT
Statistics
Matches: 459, Mismatches: 87, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
71 7 0.02
72 79 0.17
73 284 0.62
74 63 0.14
75 26 0.06
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (73 bp):
ATTCTACTGAATGTGCTCAAACAAGCAATATCTACTGATTCTACTGAAAGTGCTCAACGAGCAAT
ATCTACTG
Found at i:93321707 original size:219 final size:219
Alignment explanation
Indices: 93321307--93321929 Score: 1011
Period size: 219 Copynumber: 2.8 Consensus size: 219
93321297 AGGAACACTA
* **
93321307 ATTCTACTAAAGTGCTCAA-TGAGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATA
1 ATTCTACTGAAGTGCTCAACCAAGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATA
93321371 TCTACTGATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAA
66 TCTACTGATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAA
*
93321436 AGACCAATATCTACTGGTTCTATTGAAAGTGCTCAACAAGCAATATCTACTGATGCTACTGAATG
131 AGACCAATATCTACTGGTTCTATTGAAAGTGCTCAACAAGCAATATCTACTGATCCTACTGAATG
93321501 TGCTTAAACGAGCAATGTCTATTG
196 TGCTTAAACGAGCAATGTCTATTG
93321525 ATTCTACTGAAGTGCTCAACCAAGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATA
1 ATTCTACTGAAGTGCTCAACCAAGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATA
93321590 TCTACTGATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAA
66 TCTACTGATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAA
93321655 AGACCAATATCTACTGGTTCTATTGAAAGTGCTCAACAAGCAATATCTACTGATCCTACTGAATG
131 AGACCAATATCTACTGGTTCTATTGAAAGTGCTCAACAAGCAATATCTACTGATCCTACTGAATG
93321720 TGCTTAAACGAGCAATGTCTATTG
196 TGCTTAAACGAGCAATGTCTATTG
* * * *
93321744 ATTCTACTGAAGTGCTTAACCAAGCAATATCTACTGATTCTACTAAAAGTGCTCAACGATCAATA
1 ATTCTACTGAAGTGCTCAACCAAGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATA
* * * * *
93321809 TCAACTGATCCTACTGAATGTCCTCAAACGAGAAATGTCTACTAATTCTACTG-AAGTGCTCAAA
66 TCTACTGATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAA
* ** * *
93321873 CA-AGCAATATCTACTAATTCTACTGAATAGTTGCTCAA-ATGAGCAATATCCACTGAT
131 -AGACCAATATCTACTGGTTCTATTGAA-AG-TGCTCAACA--AGCAATATCTACTGAT
93321930 TATACTGATT
Statistics
Matches: 381, Mismatches: 18, Indels: 9
0.93 0.04 0.02
Matches are distributed among these distances:
218 50 0.13
219 309 0.81
220 7 0.02
221 15 0.04
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (219 bp):
ATTCTACTGAAGTGCTCAACCAAGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATA
TCTACTGATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAA
AGACCAATATCTACTGGTTCTATTGAAAGTGCTCAACAAGCAATATCTACTGATCCTACTGAATG
TGCTTAAACGAGCAATGTCTATTG
Found at i:93322008 original size:39 final size:39
Alignment explanation
Indices: 93321319--93322048 Score: 284
Period size: 36 Copynumber: 19.7 Consensus size: 39
93321309 TCTACTAAAG
* * *
93321319 TGCTC-AATGAGCAATATCTACTGA-TACTACTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTA-TACTGAATGTT
* **
93321355 TGCTC-AACGAGCAATATCTACTGATCCTACTGAATG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * * *
93321391 TGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * * *
93321428 TGCTCAAAAGACCAATATCTACTGGTTCTATTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * **
93321465 TGCTC-AACAAGCAATATCTACTGATGCTACTGAATG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * *
93321501 TGCTTAAACGAGCAATGTCTATTGATTCTACTGAA-G--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * *
93321537 TGCTCAACCAAGCAATATCTACTGA-TACTACTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTA-TACTGAATGTT
* **
93321574 TGCTC-AACGAGCAATATCTACTGATCCTACTGAATG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * * *
93321610 TGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * * *
93321647 TGCTCAAAAGACCAATATCTACTGGTTCTATTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * **
93321684 TGCTC-AACAAGCAATATCTACTGATCCTACTGAATG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * *
93321720 TGCTTAAACGAGCAATGTCTATTGATTCTACTGAA-G--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * * *
93321756 TGCTTAACCAAGCAATATCTACTGATTCTACTAAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * **
93321793 TGCTC-AACGATCAATATCAACTGATCCTACTGAATG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * *
93321829 TCCTCAAACGAGAAATGTCTACTAATTCTACTGAA-G--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * *
93321865 TGCTCAAACAAGCAATATCTACTAATTCTACTGAATAG-T
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAAT-GTT
* *
93321904 TGCTCAAATGAGCAATATCCACTGATTATACTGATTGTT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * *
93321943 TGATTAAATGAGCAATACCCACTGATTATACTAAATATT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * **
93321982 TTCTCAAACGAGCGATATCCATTGATTATACTGAATGCA
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* *
93322021 TGCTCAAACGAGCCATATCCATTGATTA
1 TGCTCAAACGAGCAATATCCACTGATTA
93322049 CGCGAAATGA
Statistics
Matches: 564, Mismatches: 116, Indels: 25
0.80 0.16 0.04
Matches are distributed among these distances:
35 1 0.00
36 241 0.43
37 202 0.36
38 2 0.00
39 118 0.21
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (39 bp):
TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
Found at i:93322047 original size:78 final size:78
Alignment explanation
Indices: 93321319--93322048 Score: 255
Period size: 73 Copynumber: 9.9 Consensus size: 78
93321309 TCTACTAAAG
* * * *
93321319 TGCTC-AATGAGCAATATCTACTGA-TACTACTGAAAG--TGCTC-AACGAGCAATATCTACTGA
1 TGCTCAAACGAGCAATATCCACTGATTA-TACTGAATGCATGCTCAAACGAGCAATATCCACTGA
** *
93321379 TCCTACTGAAT-G-
65 TTATACTAAATAGT
* * * * * * * * * * *
93321391 TGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAG--TGCTCAAAAGACCAATATCTACTGGT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACGAGCAATATCCACTGAT
* * *
93321454 TCTATTGAA-AG-
66 TATACTAAATAGT
* * ** * * * *
93321465 TGCTC-AACAAGCAATATCTACTGATGCTACTGAATG--TGCTTAAACGAGCAATGTCTATTGAT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACGAGCAATATCCACTGAT
* *
93321527 TCTACT-GA-AG-
66 TATACTAAATAGT
* * * * *
93321537 TGCTCAACCAAGCAATATCTACTGA-TACTACTGAAAG--TGCTC-AACGAGCAATATCTACTGA
1 TGCTCAAACGAGCAATATCCACTGATTA-TACTGAATGCATGCTCAAACGAGCAATATCCACTGA
** *
93321598 TCCTACTGAAT-G-
65 TTATACTAAATAGT
* * * * * * * * * * *
93321610 TGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAG--TGCTCAAAAGACCAATATCTACTGGT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACGAGCAATATCCACTGAT
* * *
93321673 TCTATTGAA-AG-
66 TATACTAAATAGT
* * ** * * * *
93321684 TGCTC-AACAAGCAATATCTACTGATCCTACTGAATG--TGCTTAAACGAGCAATGTCTATTGAT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACGAGCAATATCCACTGAT
* *
93321746 TCTACT-GA-AG-
66 TATACTAAATAGT
* * * * * * * * *
93321756 TGCTTAACCAAGCAATATCTACTGATTCTACTAAAAG--TGCTC-AACGATCAATATCAACTGAT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACGAGCAATATCCACTGAT
** *
93321818 CCTACTGAAT-G-
66 TATACTAAATAGT
* * * * * * * * *
93321829 TCCTCAAACGAGAAATGTCTACTAATTCTACTGAA-G--TGCTCAAACAAGCAATATCTACTAAT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACGAGCAATATCCACTGAT
* *
93321891 TCTACTGAATAGT
66 TATACTAAATAGT
* * ** * * * *
93321904 TGCTCAAATGAGCAATATCCACTGATTATACTGATTGTTTGATTAAATGAGCAATACCCACTGAT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACGAGCAATATCCACTGAT
*
93321969 TATACTAAATATT
66 TATACTAAATAGT
* * * * *
93321982 TTCTCAAACGAGCGATATCCATTGATTATACTGAATGCATGCTCAAACGAGCCATATCCATTGAT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACGAGCAATATCCACTGAT
93322047 TA
66 TA
93322049 CGCGAAATGA
Statistics
Matches: 526, Mismatches: 112, Indels: 34
0.78 0.17 0.05
Matches are distributed among these distances:
72 70 0.13
73 282 0.54
74 63 0.12
75 27 0.05
76 1 0.00
78 83 0.16
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (78 bp):
TGCTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACGAGCAATATCCACTGAT
TATACTAAATAGT
Found at i:93324589 original size:25 final size:25
Alignment explanation
Indices: 93324526--93324608 Score: 60
Period size: 25 Copynumber: 3.3 Consensus size: 25
93324516 AAACCAAACC
** *
93324526 AAGCCTTTGTGGTGAATTTTCTAAA
1 AAGCCTTTGTGGCAAATTATCTAAA
** *
93324551 AA-CCTCTTACGGCAAATTATGTAAA
1 AAGCCT-TTGTGGCAAATTATCTAAA
* * **
93324576 AAGCCTTTGTGGCATATTACCTGGA
1 AAGCCTTTGTGGCAAATTATCTAAA
93324601 AAGCCTTT
1 AAGCCTTT
93324609 TGAGGTGAAT
Statistics
Matches: 43, Mismatches: 13, Indels: 4
0.72 0.22 0.07
Matches are distributed among these distances:
24 3 0.07
25 37 0.86
26 3 0.07
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (25 bp):
AAGCCTTTGTGGCAAATTATCTAAA
Found at i:93341848 original size:46 final size:46
Alignment explanation
Indices: 93341781--93341874 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
93341771 AAAATGAGAG
*
93341781 TAAGATTTAGCATGTCTAGTTCTAGTTAGTGTAAGAATGTATATTA
1 TAAGATTGAGCATGTCTAGTTCTAGTTAGTGTAAGAATGTATATTA
*
93341827 TAAGATTGAGCATGTCTAGTTCTAGTTAGTGTACGAATGTATATTA
1 TAAGATTGAGCATGTCTAGTTCTAGTTAGTGTAAGAATGTATATTA
93341873 TA
1 TA
93341875 TACATGATGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.40
Consensus pattern (46 bp):
TAAGATTGAGCATGTCTAGTTCTAGTTAGTGTAAGAATGTATATTA
Found at i:93345179 original size:17 final size:16
Alignment explanation
Indices: 93345145--93345192 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
93345135 AAGATTTAAC
93345145 TTTTATATTTTAATTT
1 TTTTATATTTTAATTT
*
93345161 TTTTA-ATTTTCATATT
1 TTTTATATTTTAAT-TT
*
93345177 TTTT-TACTTTAATTT
1 TTTTATATTTTAATTT
93345192 T
1 T
93345193 CATATTTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 10 0.37
16 17 0.63
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTATATTTTAATTT
Found at i:93345821 original size:28 final size:28
Alignment explanation
Indices: 93345746--93345827 Score: 85
Period size: 28 Copynumber: 3.0 Consensus size: 28
93345736 TAAAAAAAAT
*
93345746 GTGGTGTGGGTGCCAGAGGAGGCACC-G
1 GTGGTGTGGGTGCCAGAGGCGGCACCGG
* **** *
93345773 GTTGTGCCTCTGGCAGAGGCGGCACCGG
1 GTGGTGTGGGTGCCAGAGGCGGCACCGG
*
93345801 GTGGTGTGGGTGCCAGAGGCGGTACCG
1 GTGGTGTGGGTGCCAGAGGCGGCACCG
93345828 ATTGTACCTC
Statistics
Matches: 40, Mismatches: 14, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
27 19 0.47
28 21 0.52
ACGTcount: A:0.12, C:0.22, G:0.49, T:0.17
Consensus pattern (28 bp):
GTGGTGTGGGTGCCAGAGGCGGCACCGG
Found at i:93345838 original size:55 final size:54
Alignment explanation
Indices: 93345746--93345880 Score: 198
Period size: 55 Copynumber: 2.5 Consensus size: 54
93345736 TAAAAAAAAT
* * * * *
93345746 GTGGTGTGGGTGCCAGAGGAGGCACCGGTTGTGCCTCTGGCAGAGGCGGCACCGG
1 GTGGTGTGGGTGCCAGAGGCGGCACCGATTGTACCTCTGGCAGAGGCAGCACC-A
*
93345801 GTGGTGTGGGTGCCAGAGGCGGTACCGATTGTACCTCTGGCAGAGGCAGCACCA
1 GTGGTGTGGGTGCCAGAGGCGGCACCGATTGTACCTCTGGCAGAGGCAGCACCA
*
93345855 GTGGTGTGGGTCCCAGAGGCGGCACC
1 GTGGTGTGGGTGCCAGAGGCGGCACC
93345881 TAAGCAGTAT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
54 24 0.33
55 48 0.67
ACGTcount: A:0.15, C:0.24, G:0.44, T:0.17
Consensus pattern (54 bp):
GTGGTGTGGGTGCCAGAGGCGGCACCGATTGTACCTCTGGCAGAGGCAGCACCA
Found at i:93345998 original size:19 final size:20
Alignment explanation
Indices: 93345963--93346000 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
93345953 GGAAAGAAAT
*
93345963 GAGAAGAGAAGAAAAAGAAG
1 GAGAAGAGAAAAAAAAGAAG
93345983 GAGAAG-GAAAAAAAAGAA
1 GAGAAGAGAAAAAAAAGAA
93346001 AAGAAAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (20 bp):
GAGAAGAGAAAAAAAAGAAG
Found at i:93346159 original size:26 final size:23
Alignment explanation
Indices: 93346106--93346159 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
93346096 TGTTGTTAGT
*
93346106 TATTATTATTGTTAGTAAAAAAC
1 TATTATTATTATTAGTAAAAAAC
*
93346129 CATTATTATTATTAGTAAAAAAC
1 TATTATTATTATTAGTAAAAAAC
*
93346152 TAGTATTA
1 TATTATTA
93346160 GGATTGTTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.43
Consensus pattern (23 bp):
TATTATTATTATTAGTAAAAAAC
Found at i:93350974 original size:17 final size:17
Alignment explanation
Indices: 93350952--93350990 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
93350942 CGGTAATAGT
*
93350952 ATGTTCCAATTTA-ATTA
1 ATGTTCC-AGTTAGATTA
93350969 ATGTTCCAGTTAGATTA
1 ATGTTCCAGTTAGATTA
93350986 ATGTT
1 ATGTT
93350991 GTAATGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (17 bp):
ATGTTCCAGTTAGATTA
Found at i:93353824 original size:138 final size:139
Alignment explanation
Indices: 93353570--93353885 Score: 553
Period size: 138 Copynumber: 2.3 Consensus size: 139
93353560 TATTTCTAAA
* * * *
93353570 ATTTTTAAAATATTCAGATTCTATTTTTTAAAATATACTATTTTTGTATTTTATTTTTTTATCTT
1 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATCTT
*
93353635 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTATCCC
66 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTATCAC
93353700 TTTGTTTGT
131 TTTGTTTGT
93353709 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA-TTTTTTATCTT
1 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATCTT
*
93353773 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTGTCAC
66 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTATCAC
93353838 TTTGTTTGT
131 TTTGTTTGT
* *
93353847 ATTTCTAAAATTTTCGAATTTTATTTTTTAAAATATACT
1 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACT
93353886 TTATTTTATT
Statistics
Matches: 169, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
138 120 0.71
139 49 0.29
ACGTcount: A:0.28, C:0.09, G:0.07, T:0.56
Consensus pattern (139 bp):
ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATCTT
ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTATCAC
TTTGTTTGT
Found at i:93353900 original size:12 final size:12
Alignment explanation
Indices: 93353885--93353987 Score: 66
Period size: 12 Copynumber: 8.2 Consensus size: 12
93353875 TAAAATATAC
93353885 TTTATTTTATTT
1 TTTATTTTATTT
*
93353897 TTTATATTATTT
1 TTTATTTTATTT
**
93353909 TTTATACTATTT
1 TTTATTTTATTT
*
93353921 TCGTATTTTATTGT
1 T-TTATTTTATT-T
* *
93353935 TTT-TTTCATAT
1 TTTATTTTATTT
93353946 TTTATTTCT-TTT
1 TTTATTT-TATTT
**
93353958 CGTATTTTATTTT
1 TTTATTTTA-TTT
93353971 TTCATATTTTATTT
1 TT--TATTTTATTT
93353985 TTT
1 TTT
93353988 TATATTTTCT
Statistics
Matches: 69, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
11 5 0.07
12 39 0.57
13 11 0.16
14 7 0.10
15 7 0.10
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:93353912 original size:24 final size:24
Alignment explanation
Indices: 93353864--93353995 Score: 74
Period size: 24 Copynumber: 5.5 Consensus size: 24
93353854 AAATTTTCGA
* * **
93353864 ATTTTATTTTTTAAAATATACTTT
1 ATTTTATTTTTTATATTATTTTTT
93353888 ATTTTATTTTTTATATTATTTTTT
1 ATTTTATTTTTTATATTATTTTTT
** * *
93353912 ATACTATTTTCGTATTTTATTGTTTT
1 ATTTTATTTT-TTATATTATT-TTTT
* * * *
93353938 -TTTCATATTTTAT-TTCTTTTCGT
1 ATTTTATTTTTTATATTATTTT-TT
*
93353961 ATTTTATTTTTTCATATT-TTATTT
1 ATTTTATTTTTT-ATATTATTTTTT
*
93353985 -TTTTATATTTT
1 ATTTTATTTTTT
93353996 CTTTTTCTAT
Statistics
Matches: 82, Mismatches: 20, Indels: 13
0.71 0.17 0.11
Matches are distributed among these distances:
22 2 0.02
23 15 0.18
24 41 0.50
25 18 0.22
26 6 0.07
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.71
Consensus pattern (24 bp):
ATTTTATTTTTTATATTATTTTTT
Found at i:93353928 original size:37 final size:36
Alignment explanation
Indices: 93353887--93353996 Score: 118
Period size: 37 Copynumber: 3.0 Consensus size: 36
93353877 AAATATACTT
93353887 TATTTTATTTTTTATATTATTTTTTATACTATTTTCG
1 TATTTTATTTTTTATATTATTTTTTATA-TATTTTCG
* * *
93353924 TATTTTATTGTTTT-T-TTCATATTTTATTTCTTTTCG
1 TATTTTATT-TTTTATATT-ATTTTTTATATATTTTCG
93353960 TATTTTATTTTTTCATATTTTATTTTTT-TATATTTTC
1 TATTTTATTTTTT-ATA--TTATTTTTTATATATTTTC
93353997 TTTTTCTATA
Statistics
Matches: 60, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
35 4 0.07
36 18 0.30
37 19 0.32
38 11 0.18
39 6 0.10
40 2 0.03
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.73
Consensus pattern (36 bp):
TATTTTATTTTTTATATTATTTTTTATATATTTTCG
Found at i:93353940 original size:19 final size:18
Alignment explanation
Indices: 93353918--93353988 Score: 78
Period size: 17 Copynumber: 4.1 Consensus size: 18
93353908 TTTTATACTA
93353918 TTTTCGTATTTTATTGTTT
1 TTTTCGTATTTTATT-TTT
* *
93353937 TTTTCATATTTTA-TTTC
1 TTTTCGTATTTTATTTTT
93353954 TTTTCGTATTTTA---TT
1 TTTTCGTATTTTATTTTT
*
93353969 TTTTCATATTTTATTTTT
1 TTTTCGTATTTTATTTTT
93353987 TT
1 TT
93353989 ATATTTTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
15 13 0.30
17 14 0.32
18 5 0.11
19 12 0.27
ACGTcount: A:0.14, C:0.07, G:0.04, T:0.75
Consensus pattern (18 bp):
TTTTCGTATTTTATTTTT
Found at i:93353952 original size:32 final size:32
Alignment explanation
Indices: 93353916--93353985 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
93353906 TTTTTTATAC
93353916 TATTTTCGTATTT-TATTGT-TTTTTTCATATTT
1 TATTTTC-T-TTTCTATTGTATTTTTTCATATTT
*
93353948 TA-TTTCTTTTCGTATTTTATTTTTTCATATTT
1 TATTTTCTTTTC-TATTGTATTTTTTCATATTT
93353980 TATTTT
1 TATTTT
93353986 TTTATATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
29 3 0.09
30 1 0.03
31 9 0.27
32 17 0.52
33 3 0.09
ACGTcount: A:0.16, C:0.07, G:0.04, T:0.73
Consensus pattern (32 bp):
TATTTTCTTTTCTATTGTATTTTTTCATATTT
Found at i:93353957 original size:17 final size:16
Alignment explanation
Indices: 93353934--93354001 Score: 95
Period size: 15 Copynumber: 4.3 Consensus size: 16
93353924 TATTTTATTG
93353934 TTTTTTTCATATTTTA
1 TTTTTTTCATATTTTA
*
93353950 TTTCTTTTCGTATTTTA
1 TTT-TTTTCATATTTTA
93353967 -TTTTTTCATATTTTA
1 TTTTTTTCATATTTTA
*
93353982 TTTTTTT-ATATTTTC
1 TTTTTTTCATATTTTA
93353997 TTTTT
1 TTTTT
93354002 CTATACTATT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
15 24 0.51
16 11 0.23
17 12 0.26
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (16 bp):
TTTTTTTCATATTTTA
Found at i:93353965 original size:36 final size:31
Alignment explanation
Indices: 93353935--93354001 Score: 100
Period size: 32 Copynumber: 2.2 Consensus size: 31
93353925 ATTTTATTGT
93353935 TTTTTTCATATTTTATTTCTTTTCGTATTTTA
1 TTTTTTCATATTTTATTT-TTTTCGTATTTTA
* *
93353967 TTTTTTCATATTTTATTTTTTT-ATATTTTC
1 TTTTTTCATATTTTATTTTTTTCGTATTTTA
93353997 TTTTT
1 TTTTT
93354002 CTATACTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 11 0.33
31 4 0.12
32 18 0.55
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (31 bp):
TTTTTTCATATTTTATTTTTTTCGTATTTTA
Found at i:93354338 original size:11 final size:11
Alignment explanation
Indices: 93354306--93354339 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
93354296 ATAAATTTAT
*
93354306 AAATTAAATCT
1 AAATTAAATCA
93354317 AAATTAAATCA
1 AAATTAAATCA
*
93354328 AAATCAAATCA
1 AAATTAAATCA
93354339 A
1 A
93354340 GAATAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.26
Consensus pattern (11 bp):
AAATTAAATCA
Found at i:93354508 original size:14 final size:15
Alignment explanation
Indices: 93354479--93354517 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
93354469 CGTCTGCTTG
93354479 CTCC-TTCTTCTTCT
1 CTCCTTTCTTCTTCT
*
93354493 CTTCTTTCTT-TTCT
1 CTCCTTTCTTCTTCT
93354507 CTCCTTTCTTC
1 CTCCTTTCTTC
93354518 CCCAAATGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (15 bp):
CTCCTTTCTTCTTCT
Found at i:93354707 original size:22 final size:22
Alignment explanation
Indices: 93354680--93354724 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
93354670 TTTTTCAGCA
93354680 TCTTTCTACTATTTCTTTTTTT
1 TCTTTCTACTATTTCTTTTTTT
*
93354702 TCTTTCTACTGTTTCTTTTTTT
1 TCTTTCTACTATTTCTTTTTTT
93354724 T
1 T
93354725 TACTGTTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.73
Consensus pattern (22 bp):
TCTTTCTACTATTTCTTTTTTT
Found at i:93354730 original size:17 final size:19
Alignment explanation
Indices: 93354698--93354733 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
93354688 CTATTTCTTT
93354698 TTTTTCTTTCTACTGTTTC
1 TTTTTCTTTCTACTGTTTC
93354717 TTTTT-TTT-TACTGTTTC
1 TTTTTCTTTCTACTGTTTC
93354734 ATGTCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 3 0.18
19 5 0.29
ACGTcount: A:0.06, C:0.17, G:0.06, T:0.72
Consensus pattern (19 bp):
TTTTTCTTTCTACTGTTTC
Found at i:93354898 original size:3 final size:3
Alignment explanation
Indices: 93354890--93354919 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
93354880 CAAAACAGTA
*
93354890 AAT AAT AAT AAT AAT AGT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
93354920 GATTTAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:93357951 original size:33 final size:33
Alignment explanation
Indices: 93357909--93357974 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
93357899 TGATAAAATT
93357909 GAAAATATGAAATTTATAATGTGTTTGGTTTTA
1 GAAAATATGAAATTTATAATGTGTTTGGTTTTA
*
93357942 GAAACTATGAAATTTATAATGTGTTTGGTTTTA
1 GAAAATATGAAATTTATAATGTGTTTGGTTTTA
93357975 CTTTTTAGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.45
Consensus pattern (33 bp):
GAAAATATGAAATTTATAATGTGTTTGGTTTTA
Found at i:93359539 original size:15 final size:15
Alignment explanation
Indices: 93359519--93359579 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 15
93359509 CAAGTTTAAC
93359519 ATGAATTAAACCTAA
1 ATGAATTAAACCTAA
**
93359534 ATGAATTTTACAAGTTTAA
1 ATGAA--TTA-AA-CCTAA
93359553 CATGAATTAAACCTAA
1 -ATGAATTAAACCTAA
*
93359569 ATGAATGAAAC
1 ATGAATTAAAC
93359580 AATCATTTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
15 15 0.42
16 3 0.08
17 5 0.14
18 5 0.14
19 3 0.08
20 5 0.14
ACGTcount: A:0.49, C:0.11, G:0.10, T:0.30
Consensus pattern (15 bp):
ATGAATTAAACCTAA
Found at i:93359544 original size:35 final size:35
Alignment explanation
Indices: 93359505--93359574 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
93359495 TGGCCTTAGA
93359505 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
1 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
93359540 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
1 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
93359575 GAAACAATCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (35 bp):
TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
Found at i:93359559 original size:20 final size:20
Alignment explanation
Indices: 93359505--93359560 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
93359495 TGGCCTTAGA
93359505 TTTACAAGTTTAACATGAA-
1 TTTACAAGTTTAACATGAAT
**
93359524 -TTA-AA-CCTAA-ATGAAT
1 TTTACAAGTTTAACATGAAT
93359540 TTTACAAGTTTAACATGAAT
1 TTTACAAGTTTAACATGAAT
93359560 T
1 T
93359561 AAACCTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 9
0.68 0.10 0.22
Matches are distributed among these distances:
15 5 0.18
16 3 0.11
17 5 0.18
18 5 0.18
19 3 0.11
20 7 0.25
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.38
Consensus pattern (20 bp):
TTTACAAGTTTAACATGAAT
Found at i:93360672 original size:22 final size:20
Alignment explanation
Indices: 93360642--93360681 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
93360632 TTCCCATGGA
93360642 AATTATAAAATACCACAAAATT
1 AATTAT-AAA-ACCACAAAATT
*
93360664 AATTGTAAAACCACAAAA
1 AATTATAAAACCACAAAA
93360682 AAATGTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 3 0.18
22 5 0.29
ACGTcount: A:0.60, C:0.15, G:0.03, T:0.23
Consensus pattern (20 bp):
AATTATAAAACCACAAAATT
Found at i:93364001 original size:45 final size:44
Alignment explanation
Indices: 93363916--93364001 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 44
93363906 TATGTAATCT
*
93363916 GAACTCATTGAGTTGTGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCC
* *
93363960 GAACTCATTGAGTTGTGGTCTGAGTTCGTGATATGTATGACA
1 GAACTCATTGAGTTGT-GTCTGAGTTCATGATATATATGACA
93364002 CATGTTTTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 16 0.42
45 22 0.58
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (44 bp):
GAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCC
Found at i:93365459 original size:20 final size:21
Alignment explanation
Indices: 93365434--93365472 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
93365424 TTCTTGAAAT
93365434 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
93365454 AGGGCAACACGCCTGTGTG
1 AGGGCAACACGCCCGTGTG
93365473 TTCATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.21, C:0.28, G:0.38, T:0.13
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:93367351 original size:20 final size:19
Alignment explanation
Indices: 93367315--93367356 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
93367305 AATAAATGTA
93367315 TTATATTTTATATTATTTAC
1 TTATATTTTATATTA-TTAC
93367335 TTATATTTTAT-TATATTAC
1 TTATATTTTATAT-TATTAC
93367354 TTA
1 TTA
93367357 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATATTTTATATTATTAC
Found at i:93367371 original size:23 final size:18
Alignment explanation
Indices: 93367315--93367356 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
93367305 AATAAATGTA
93367315 TTATATTTTATATTATTTAC
1 TTATA-TTT-TATTATTTAC
93367335 TTATATTTTATTATATTAC
1 TTATATTTTATTAT-TTAC
93367354 TTA
1 TTA
93367357 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 10 0.48
20 5 0.24
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATTTTATTATTTAC
Found at i:93367535 original size:41 final size:39
Alignment explanation
Indices: 93367467--93367576 Score: 109
Period size: 41 Copynumber: 2.7 Consensus size: 39
93367457 AACCATATAT
93367467 TTTTTCATATTATTATTATTTATTATATATTT-TTAAATTA
1 TTTTT-ATATTATTATTATTTATTATATATTTATT-AATTA
*
93367507 TTATTTATATTATT-TTACTTGTATTATATCTTTATTAATTA
1 TT-TTTATATTATTATTA-TT-TATTATATATTTATTAATTA
* * *
93367548 TTTATATATTATACATTATTT-TTACATAT
1 TTTTTATATTAT-TATTATTTATTATATAT
93367577 ATACTTTCAT
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
39 9 0.15
40 22 0.37
41 23 0.39
42 5 0.08
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.63
Consensus pattern (39 bp):
TTTTTATATTATTATTATTTATTATATATTTATTAATTA
Found at i:93367626 original size:16 final size:16
Alignment explanation
Indices: 93367542--93367614 Score: 56
Period size: 19 Copynumber: 4.1 Consensus size: 16
93367532 ATATCTTTAT
93367542 TAATTATTTATATATTA
1 TAATTATTT-TATATTA
*
93367559 TACATTATTTTTACATATA
1 TA-ATTA-TTTTATAT-TA
*
93367578 TACTTTCATATTATATATTA
1 TA-ATT-AT-TT-TATATTA
93367598 TAATTATTTTATATTA
1 TAATTATTTTATATTA
93367614 T
1 T
93367615 GTTATTTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
16 8 0.17
17 4 0.09
18 10 0.22
19 13 0.28
20 7 0.15
21 4 0.09
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTATTTTATATTA
Found at i:93390804 original size:20 final size:20
Alignment explanation
Indices: 93390779--93390826 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
93390769 TTTGGCCTCT
*
93390779 TCGACACTCCAGAGATGTTA
1 TCGACACTCCAGAGATGTCA
*
93390799 TCGACACTCCAGATATGTCA
1 TCGACACTCCAGAGATGTCA
93390819 TCGACACT
1 TCGACACT
93390827 TACACTAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (20 bp):
TCGACACTCCAGAGATGTCA
Found at i:93410264 original size:24 final size:24
Alignment explanation
Indices: 93410236--93410281 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
93410226 GCATGAATTG
*
93410236 CTTCGCTCTTTCTTTGATAATGCA
1 CTTCGCTCTTTCTTCGATAATGCA
93410260 CTTCGCTCTTTCTTCGATAATG
1 CTTCGCTCTTTCTTCGATAATG
93410282 GAGTCCATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.26, G:0.13, T:0.46
Consensus pattern (24 bp):
CTTCGCTCTTTCTTCGATAATGCA
Found at i:93419556 original size:43 final size:43
Alignment explanation
Indices: 93419502--93419630 Score: 152
Period size: 43 Copynumber: 3.0 Consensus size: 43
93419492 TATTTAAAAA
* * *
93419502 CATGGCTTTTAGCTACGTTTGTTTGCAAGGC-CCTGCTAAAAGT
1 CATGGCTTTTAGCGACGTTTGTTGGCAAAGCGCC-GCTAAAAGT
* *
93419545 CATGGCTTTTAGCGGCGTTTGTTGGTAAAGCGCCGCTAAAAGT
1 CATGGCTTTTAGCGACGTTTGTTGGCAAAGCGCCGCTAAAAGT
* * ** *
93419588 CATGGCTTTTAGTGGCGTTTGTACGAAAAGCGCCGCTAAAAGT
1 CATGGCTTTTAGCGACGTTTGTTGGCAAAGCGCCGCTAAAAGT
93419631 TCCACAAAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
43 74 0.97
44 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
CATGGCTTTTAGCGACGTTTGTTGGCAAAGCGCCGCTAAAAGT
Found at i:93419737 original size:31 final size:31
Alignment explanation
Indices: 93419702--93419784 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
93419692 CTTCCTGCAC
*
93419702 TAAAATCCAACCAAATACAACAAACATAGCA
1 TAAAATCCAACCAAAAACAACAAACATAGCA
* * * **
93419733 TAAAATGCAGCCAAAAACAGCAAATTTAGCA
1 TAAAATCCAACCAAAAACAACAAACATAGCA
*
93419764 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
93419785 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.59, C:0.22, G:0.06, T:0.13
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAACATAGCA
Found at i:93420043 original size:21 final size:21
Alignment explanation
Indices: 93420019--93420094 Score: 98
Period size: 21 Copynumber: 3.6 Consensus size: 21
93420009 GTTGTCATCG
93420019 CTGCTGCCTCTGCCTCCCTCA
1 CTGCTGCCTCTGCCTCCCTCA
* * * *
93420040 CTGCTACCGCTGCCTCCTTCG
1 CTGCTGCCTCTGCCTCCCTCA
* *
93420061 CTGCTGCCACTGCCTCCCTCT
1 CTGCTGCCTCTGCCTCCCTCA
93420082 CTGCTGCCTCTGC
1 CTGCTGCCTCTGC
93420095 TCTAAGTTGT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.04, C:0.50, G:0.17, T:0.29
Consensus pattern (21 bp):
CTGCTGCCTCTGCCTCCCTCA
Found at i:93425742 original size:9 final size:9
Alignment explanation
Indices: 93425728--93426138 Score: 424
Period size: 9 Copynumber: 46.4 Consensus size: 9
93425718 TATTTAAGTA
*
93425728 TTATGTAAG
1 TTATATAAG
*
93425737 TTATGTAAG
1 TTATATAAG
*
93425746 TTATGATATG
1 TTAT-ATAAG
* *
93425756 ATATAT-AT
1 TTATATAAG
*
93425764 TTATGTAAG
1 TTATATAAG
*
93425773 TTATAT-AT
1 TTATATAAG
*
93425781 TTATCTAAG
1 TTATATAAG
*
93425790 TTGTATAAG
1 TTATATAAG
*
93425799 TTATGTAAG
1 TTATATAAG
*
93425808 TTATGTAAG
1 TTATATAAG
* *
93425817 TTGTAT-AT
1 TTATATAAG
*
93425825 TTATCTAAG
1 TTATATAAG
93425834 TTATATAAG
1 TTATATAAG
93425843 TTATATAAG
1 TTATATAAG
*
93425852 TTATGTAAG
1 TTATATAAG
*
93425861 TTCTATAAG
1 TTATATAAG
93425870 TTATATAAG
1 TTATATAAG
*
93425879 TTATAT-AT
1 TTATATAAG
*
93425887 TTATCTAAG
1 TTATATAAG
93425896 TTATATAAG
1 TTATATAAG
*
93425905 TTATGTAAG
1 TTATATAAG
*
93425914 TTATAT-AT
1 TTATATAAG
*
93425922 TTATCTAAG
1 TTATATAAG
93425931 TTATATAAG
1 TTATATAAG
93425940 TTATATAAG
1 TTATATAAG
*
93425949 TTATGTAAG
1 TTATATAAG
*
93425958 TTATATAAT
1 TTATATAAG
93425967 TTATATAAG
1 TTATATAAG
*
93425976 TTATAT-AT
1 TTATATAAG
*
93425984 TTATCTAAG
1 TTATATAAG
*
93425993 TTATATAGG
1 TTATATAAG
*
93426002 TTATAT-AT
1 TTATATAAG
*
93426010 TTATCTAAG
1 TTATATAAG
*
93426019 TTATATAAA
1 TTATATAAG
*
93426028 TTATGTAAG
1 TTATATAAG
*
93426037 TTATGTAAG
1 TTATATAAG
*
93426046 TTATAT-AT
1 TTATATAAG
*
93426054 TTATCTAAG
1 TTATATAAG
93426063 TTATATAAG
1 TTATATAAG
93426072 TTATATAAG
1 TTATATAAG
*
93426081 TTATGTAAG
1 TTATATAAG
93426090 TTATATAAG
1 TTATATAAG
93426099 TTATATAAG
1 TTATATAAG
93426108 TTATATAAG
1 TTATATAAG
*
93426117 TTATGTAAG
1 TTATATAAG
* *
93426126 TTTTGTAAG
1 TTATATAAG
93426135 TTAT
1 TTAT
93426139 GCTAAATATT
Statistics
Matches: 329, Mismatches: 64, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
8 44 0.13
9 279 0.85
10 6 0.02
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATATAAG
Found at i:93425812 original size:44 final size:44
Alignment explanation
Indices: 93425737--93426138 Score: 493
Period size: 44 Copynumber: 8.9 Consensus size: 44
93425727 ATTATGTAAG
* * * *
93425737 TTATGTAAGTTATGATATGATATAT-ATTTATGTAAGTTATATAT
1 TTATCTAAGTTAT-ATAAGTTATATAAGTTATGTAAGTTATATAT
* * *
93425781 TTATCTAAGTTGTATAAGTTATGTAAGTTATGTAAGTTGTATAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
* *
93425825 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTCTATAAG
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT-AT
*
93425870 TTATATAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATATAT
1 TTATCTAAG---T-TA--TA--TAAGTTATATAAGTTATGTAAGTTATATAT
93425922 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT-AT
* * * * *
93425967 TTATATAAGTTATAT-ATTTATCTAAGTTATATAGGTTATATAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
* *
93426010 TTATCTAAGTTATATAAATTATGTAAGTTATGTAAGTTATATAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
*
93426054 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAAG
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT-AT
* * *
93426099 TTATATAAGTTATATAAGTTATGTAAGTTTTGTAAGTTAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTAT
93426139 GCTAAATATT
Statistics
Matches: 314, Mismatches: 31, Indels: 25
0.85 0.08 0.07
Matches are distributed among these distances:
43 24 0.08
44 181 0.58
45 63 0.20
46 2 0.01
48 3 0.01
49 3 0.01
51 2 0.01
52 9 0.03
53 27 0.09
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (44 bp):
TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
Found at i:93425845 original size:97 final size:99
Alignment explanation
Indices: 93425727--93426138 Score: 433
Period size: 97 Copynumber: 4.1 Consensus size: 99
93425717 ATATTTAAGT
* * *
93425727 ATTATGTAAGTTATGTAAGTTATGATATGATATAT-ATTTATGTAAGTTATATATTTATCTAAGT
1 ATTATGTAAGTTATATAAGTTATGATATGATATATAAGTTATATAAGTTATATATTTATCTAAGT
* * *
93425791 TGTATAAGTTATGTAAGTTATGTAAGTTGTATATTTATCTA
66 TATATAAGTTATATAAGTTATATAAG-T-TATA--TA---A
* * * *
93425832 AGTTATATAAGTTATATAAGTTATG-TAAGTTCTATAAGTTATATAAGTTATATATTTATCTAAG
1 A-TTATGTAAGTTATATAAGTTATGATATGATATATAAGTTATATAAGTTATATATTTATCTAAG
* * *
93425896 TTATATAAGTTATGTAAGTTATAT-ATTTATCTAA
65 TTATATAAGTTATATAAGTTATATAAGTTATATAA
* * * * *
93425930 GTTATATAAGTTATATAAGTTATG-TAAGTTATATAATTTATATAAGTTATATATTTATCTAAGT
1 ATTATGTAAGTTATATAAGTTATGATATGATATATAAGTTATATAAGTTATATATTTATCTAAGT
* * *
93425994 TATATAGGTTATAT-ATTTATCTAAGTTATATAA
66 TATATAAGTTATATAAGTTATATAAGTTATATAA
* * * * *
93426027 ATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTATATAAGTTATATAAGTTATGTAAG
1 ATTATGTAAGTTATATAAGTTATGATATGATATATAAGTTATATAAGTTATAT-ATTTATCTAAG
*
93426090 TTATATAAGTTATATAAGTTATATAAGTTATGTAA
65 TTATATAAGTTATATAAGTTATATAAGTTATATAA
* *
93426125 GTTTTGTAAGTTAT
1 ATTATGTAAGTTAT
93426139 GCTAAATATT
Statistics
Matches: 267, Mismatches: 34, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
96 28 0.10
97 126 0.47
98 29 0.11
101 2 0.01
103 3 0.01
104 1 0.00
105 9 0.03
106 69 0.26
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (99 bp):
ATTATGTAAGTTATATAAGTTATGATATGATATATAAGTTATATAAGTTATATATTTATCTAAGT
TATATAAGTTATATAAGTTATATAAGTTATATAA
Found at i:93426271 original size:15 final size:15
Alignment explanation
Indices: 93426251--93426335 Score: 83
Period size: 15 Copynumber: 5.8 Consensus size: 15
93426241 TAAGTTGCGG
93426251 ATTAAATAATATTTA
1 ATTAAATAATATTTA
93426266 ATTAAATAATATTT-
1 ATTAAATAATATTTA
93426280 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
93426295 ATTAAATAATATTGA
1 ATTAAATAATATTTA
93426310 A--AAA-AATTACTTTA
1 ATTAAATAA-TA-TTTA
93426324 ATTAAATAATAT
1 ATTAAATAATAT
93426336 ACATATCGTT
Statistics
Matches: 58, Mismatches: 2, Indels: 20
0.73 0.03 0.25
Matches are distributed among these distances:
12 4 0.07
13 11 0.19
14 8 0.14
15 20 0.34
16 11 0.19
17 4 0.07
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:93426299 original size:29 final size:29
Alignment explanation
Indices: 93426262--93426335 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
93426252 TTAAATAATA
* * *
93426262 TTTAATTAAATAATATTTATAAAAATTAT
1 TTTAATTAAATAATATTGAAAAAAATTAC
93426291 TTTAATTAAATAATATTGAAAAAAATTAC
1 TTTAATTAAATAATATTGAAAAAAATTAC
93426320 TTTAATTAAATAATAT
1 TTTAATTAAATAATAT
93426336 ACATATCGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (29 bp):
TTTAATTAAATAATATTGAAAAAAATTAC
Found at i:93426541 original size:24 final size:24
Alignment explanation
Indices: 93426509--93426579 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
93426499 TTAACTTAAA
93426509 TGATAAAACAGACGATAATATTTG
1 TGATAAAACAGACGATAATATTTG
*
93426533 TGATAAAACAGACAATAATATTTG
1 TGATAAAACAGACGATAATATTTG
* *
93426557 TGATAAAACGGACGAGAATATTT
1 TGATAAAACAGACGATAATATTT
93426580 CAATAATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.28
Consensus pattern (24 bp):
TGATAAAACAGACGATAATATTTG
Found at i:93426693 original size:62 final size:63
Alignment explanation
Indices: 93426627--93426758 Score: 239
Period size: 64 Copynumber: 2.1 Consensus size: 63
93426617 ATATTTTATT
*
93426627 AAATATTTGTATATTAGATGGGAC-ATTATATTAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACAATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
93426689 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACA-ATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
93426753 AAATAT
1 AAATAT
93426759 AGAAATATTA
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 24 0.36
64 43 0.64
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.38
Consensus pattern (63 bp):
AAATATTTGTATATTAGATGGGACAATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
Found at i:93429608 original size:23 final size:24
Alignment explanation
Indices: 93429564--93429611 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
93429554 TCAATATAAC
*
93429564 AAAAATTGTAATCACAAGATTGTA
1 AAAAATTGTAATCACAACATTGTA
93429588 AAAAATTGTAA-CATC-ACATTGTA
1 AAAAATTGTAATCA-CAACATTGTA
93429611 A
1 A
93429612 TCACAAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.29
Consensus pattern (24 bp):
AAAAATTGTAATCACAACATTGTA
Found at i:93429746 original size:6 final size:6
Alignment explanation
Indices: 93429735--93429761 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
93429725 GAGAGAAGAG
93429735 GCAGAC GCAGAC GCAGAC GCAGAC GCA
1 GCAGAC GCAGAC GCAGAC GCAGAC GCA
93429762 ATTAGGGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (6 bp):
GCAGAC
Found at i:93430630 original size:6 final size:6
Alignment explanation
Indices: 93430609--93430687 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
93430599 TAGCAGAACT
* * * *
93430609 AGAATC AAAATG AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
*
93430658 AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
93430688 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 3 0.05
6 47 0.82
7 5 0.09
8 2 0.04
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:93430654 original size:25 final size:25
Alignment explanation
Indices: 93430621--93430687 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
93430611 AATCAAAATG
* *
93430621 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
93430646 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
93430671 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
93430688 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:93430846 original size:27 final size:26
Alignment explanation
Indices: 93430805--93430912 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 26
93430795 AGCATGGCTG
* * *
93430805 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
93430831 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
93430858 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
93430885 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAGAGCCA
93430912 C
1 C
93430913 TTAACAAAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 12 0.16
27 55 0.75
28 6 0.08
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:93431506 original size:27 final size:27
Alignment explanation
Indices: 93431476--93431607 Score: 122
Period size: 27 Copynumber: 4.9 Consensus size: 27
93431466 GGGGCAAAAT
*
93431476 GGTAATTTTACCCCAC-GAGGGTATCTC
1 GGTAATTCTACCCCACAG-GGGTATCTC
* * *
93431503 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCCACAGGGGTATCTC
** *
93431530 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCCACAGGGGTATCTC
* * *
93431557 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAGGGGTATCTC
** * *
93431584 AATAATTCTACCCGACATGGGTAT
1 GGTAATTCTACCCCACAGGGGTAT
93431608 TTCAATAATT
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 92 0.99
28 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCCACAGGGGTATCTC
Found at i:93431608 original size:27 final size:27
Alignment explanation
Indices: 93431505--93431617 Score: 163
Period size: 27 Copynumber: 4.2 Consensus size: 27
93431495 GGTATCTCGG
***
93431505 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAA
* *
93431532 TAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAA
93431559 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
* *
93431586 TAATTCTACCCGACATGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
93431613 TAATT
1 TAATT
93431618 TTGTAAATCG
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:93431632 original size:27 final size:26
Alignment explanation
Indices: 93431602--93431726 Score: 90
Period size: 27 Copynumber: 4.6 Consensus size: 26
93431592 TACCCGACAT
*
93431602 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTT-AGTAATTTTGTAAATCGA
** * *
93431629 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGT-ATTTAGTAATTTTGTAAATCGA
* *
93431656 GGGTACTTTGGTAATTTT-TCTAATCGA
1 GGGTA-TTTAGTAATTTTGT-AAATCGA
** **
93431683 GGGTATTTTAGTAATTTTACAGCTCGA
1 GGGTA-TTTAGTAATTTTGTAAATCGA
93431710 GGGTATTTCAGTAATTT
1 GGGTATTT-AGTAATTT
93431727 CACAAATTAG
Statistics
Matches: 78, Mismatches: 15, Indels: 10
0.76 0.15 0.10
Matches are distributed among these distances:
26 5 0.06
27 71 0.91
28 2 0.03
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTGTAAATCGA
Found at i:93431740 original size:27 final size:27
Alignment explanation
Indices: 93431656--93431807 Score: 139
Period size: 27 Copynumber: 5.7 Consensus size: 27
93431646 TGTAAATCGA
* * * *
93431656 GGGTACTTTGGTAATTTTTCTAA-TCG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
93431682 AGGGTATTTTAGTAATTTTAC-AGCTCG
1 -GGGTATTTTGGTAATTTTACAAACTAG
** * *
93431709 AGGGTATTTCAGTAATTTCACAAATTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
93431737 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
93431764 GGATATTTTGGTAATTTTACAAACCA-
1 GGGTATTTTGGTAATTTTACAAACTAG
*
93431790 GGATATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
93431808 GCTAATCGAG
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 19 0.18
27 86 0.80
28 3 0.03
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:93431832 original size:53 final size:53
Alignment explanation
Indices: 93431682--93431833 Score: 155
Period size: 54 Copynumber: 2.8 Consensus size: 53
93431672 TTTCTAATCG
* * **
93431682 AGGG-TATTTTAGTAATTTTACAGCTCGAGGGTATTTCAGTAATTTCACAAATT
1 AGGGATATTTTGGTAATTTTACA-ATCGAGGGTATTTCAGTAATTTCACAAACC
* * * ** *
93431735 AGGGGTATTTTGGTAATTTTACAAACTAGGGATATTTTGGTAATTTTACAAACC
1 AGGGATATTTTGGTAATTTTACAATCGAGGG-TATTTCAGTAATTTCACAAACC
* *
93431789 A-GGATATTTTGGTAATTTTGCTAATCGAGGGTATTTCAATAATTT
1 AGGGATATTTTGGTAATTTTAC-AATCGAGGGTATTTCAGTAATTT
93431834 GGTAAACTAA
Statistics
Matches: 80, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
53 38 0.47
54 42 0.52
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (53 bp):
AGGGATATTTTGGTAATTTTACAATCGAGGGTATTTCAGTAATTTCACAAACC
Found at i:93433162 original size:187 final size:187
Alignment explanation
Indices: 93432900--93433366 Score: 763
Period size: 187 Copynumber: 2.5 Consensus size: 187
93432890 ATGACACAGT
* *
93432900 TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTTACACATTTT
1 TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
* * * *
93432965 GTGGCGTTTATAAAAGTGCCACTAATAATAGACTATAAAGCGACGACGTTTTGAAATCTCTTTAA
66 GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
* * *
93433030 ATGTTTTGTGGCATTTTTATAGAAAGCGCCACTAATAACAAGGTAATAACGATGTCG
131 ATGTTTTGTGGCATTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGCCG
* * * *
93433087 TTTTGCAATCTGTTAATCGATTTTTGTGGCATTTCTAGAGAAAACGCCAGTATTTCACACCTTTT
1 TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
93433152 GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
66 GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
*
93433217 ATGTTTTGTGGCGTTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGCCG
131 ATGTTTTGTGGCATTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGCCG
* * *
93433274 TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTATAGAAAATGCCGGTAATTCTCACCTTTT
1 TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
* *
93433339 GCGGCGTTTATAGAAGCGCCACTAATAA
66 GTGGCGTTTATAAAAGCGCCACTAATAA
93433367 GAAGGATGTA
Statistics
Matches: 257, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
187 257 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (187 bp):
TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
ATGTTTTGTGGCATTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGCCG
Found at i:93433299 original size:75 final size:74
Alignment explanation
Indices: 93433148--93433316 Score: 195
Period size: 75 Copynumber: 2.3 Consensus size: 74
93433138 ATTTCACACC
93433148 TTTTGTGGCG-TTTATA-AAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCT
1 TTTTGTGGCGTTTTATAGAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCT
93433211 CTTTAAATG
66 CTTTAAATG
* * ** *
93433220 TTTTGTGGCGTTTTAATAGAAAGCGCCACTAATAACAAG-GTA-ATAACGACGCCGTTTTGCAAT
1 TTTTGTGGCGTTTT-ATAGAAAGCGCCACTAATAA-AAGACTATAAAACGACAACGTTTTGAAAT
* *
93433283 CTGTTAATAGAT-
64 CTCTT--TAAATG
93433295 TTTTGTGGCGTTTCTATAGAAA
1 TTTTGTGGCGTTT-TATAGAAA
93433317 ATGCCGGTAA
Statistics
Matches: 83, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
72 10 0.12
73 3 0.04
74 24 0.29
75 38 0.46
76 8 0.10
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (74 bp):
TTTTGTGGCGTTTTATAGAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCT
CTTTAAATG
Found at i:93433667 original size:28 final size:27
Alignment explanation
Indices: 93433615--93433667 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
93433605 GGTCTCTCTA
*
93433615 ATATATTTAAATTTTAGATTTATTTGC
1 ATATATTTAAATTTTAGATTCATTTGC
*
93433642 ATATACTTTAATTTTTA-ATATCATTT
1 ATATA-TTTAAATTTTAGAT-TCATTT
93433668 AGTCTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (27 bp):
ATATATTTAAATTTTAGATTCATTTGC
Found at i:93433847 original size:14 final size:14
Alignment explanation
Indices: 93433824--93433853 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93433814 TTTTACATTA
*
93433824 ATATCTATATATAT
1 ATATCAATATATAT
93433838 ATATCAATATATAT
1 ATATCAATATATAT
93433852 AT
1 AT
93433854 CCATATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATCAATATATAT
Found at i:93433977 original size:22 final size:22
Alignment explanation
Indices: 93433908--93433970 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
93433898 TAATTAAGGG
* * *
93433908 TTTAAGGGTTTATTGTCTATAG-
1 TTTAAGGTTTTATAGT-TTTAGA
* *
93433930 TTTAAGGTTTTATGGTTTTGGA
1 TTTAAGGTTTTATAGTTTTAGA
93433952 TTTAAGG-TTTATAGTTTTA
1 TTTAAGGTTTTATAGTTTTA
93433971 AGTTTTATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 13 0.38
22 21 0.62
ACGTcount: A:0.22, C:0.02, G:0.22, T:0.54
Consensus pattern (22 bp):
TTTAAGGTTTTATAGTTTTAGA
Found at i:93433984 original size:14 final size:15
Alignment explanation
Indices: 93433950--93434013 Score: 62
Period size: 14 Copynumber: 4.4 Consensus size: 15
93433940 TATGGTTTTG
93433950 GATTTAAGGTTTATA
1 GATTTAAGGTTTATA
* *
93433965 GTTTTAAGTTTTATA
1 GATTTAAGGTTTATA
*
93433980 -ATTTAAGGTCTAGT-
1 GATTTAAGGTTTA-TA
93433994 GATTT-AGGTTTATA
1 GATTTAAGGTTTATA
*
93434008 GTTTTA
1 GATTTA
93434014 TGATTTAATT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
13 1 0.03
14 19 0.50
15 18 0.47
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.52
Consensus pattern (15 bp):
GATTTAAGGTTTATA
Found at i:93437672 original size:23 final size:22
Alignment explanation
Indices: 93437646--93437688 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
93437636 TTTTGAATCA
* *
93437646 TATGTTTTGGTATGACTTTGGCT
1 TATGATTTGGCATGA-TTTGGCT
93437669 TATGATTTGGCATGATTTGG
1 TATGATTTGGCATGATTTGG
93437689 TATGGATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.16, C:0.07, G:0.28, T:0.49
Consensus pattern (22 bp):
TATGATTTGGCATGATTTGGCT
Found at i:93440649 original size:22 final size:19
Alignment explanation
Indices: 93440624--93440671 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 19
93440614 TACCGTTTCG
93440624 ATTAAATTCTTGTCAAAAAATA
1 ATTAAATT-TT-T-AAAAAATA
*
93440646 ATT-AATTTTTATAAAATA
1 ATTAAATTTTTAAAAAATA
93440664 ATTAAATT
1 ATTAAATT
93440672 ATACTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 10 0.42
19 5 0.21
20 2 0.08
21 4 0.17
22 3 0.12
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (19 bp):
ATTAAATTTTTAAAAAATA
Found at i:93448596 original size:124 final size:123
Alignment explanation
Indices: 93448444--93448667 Score: 339
Period size: 126 Copynumber: 1.8 Consensus size: 123
93448434 ATGTTTTTAA
93448444 TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAA-TATATATTAA-TTAT
1 TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATTATATATTAACTT-T
*
93448507 TATCAATTTTAG-ATAGAGTTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAAGTT
65 TATCAA-TTTAGCATAGAATTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAAGTT
*
93448566 TTTAATAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATATTAAC
1 TTTAATAA-AA-AAGATGATAAT-TATTAATATATAATTATATCCATTATAA-TTATATATTAAC
*
93448630 TTTTATCAATTTAGCATAGAATTAGGATTAGTTTTAAT
62 TTTTATCAATTTAGCATAGAATTAGGATTAGTGTTAAT
93448668 CATATCTCGT
Statistics
Matches: 92, Mismatches: 3, Indels: 10
0.88 0.03 0.10
Matches are distributed among these distances:
122 8 0.09
123 2 0.02
124 36 0.39
125 6 0.07
126 38 0.41
127 2 0.02
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (123 bp):
TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATTATATATTAACTTTT
ATCAATTTAGCATAGAATTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAAGTT
Found at i:93448681 original size:124 final size:120
Alignment explanation
Indices: 93448444--93448672 Score: 317
Period size: 124 Copynumber: 1.9 Consensus size: 120
93448434 ATGTTTTTAA
93448444 TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTA
1 TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTA
*
93448509 TCAATTTTAGATAGAGTTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAAGTT
66 TCAATTTTAGATAGAATTAGGATTAG-GTT-ATTTAATCATATTTTTTTGATAAGTT
*
93448566 TTTAATAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATATTAAC
1 TTTAATAA-AA-AAGATGATAAT-TATTAATATATAATTATATCCATTATAA--TATATATTAA-
93448630 TT-TTATCAA-TTTAGCATAGAATTAGGATTA-G-T-TTTAATCATAT
60 TTATTATCAATTTTAG-ATAGAATTAGGATTAGGTTATTTAATCATAT
93448673 CTCGTTTTTG
Statistics
Matches: 98, Mismatches: 2, Indels: 15
0.85 0.02 0.13
Matches are distributed among these distances:
121 11 0.11
122 8 0.08
123 3 0.03
124 37 0.38
125 6 0.06
126 31 0.32
127 2 0.02
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (120 bp):
TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTA
TCAATTTTAGATAGAATTAGGATTAGGTTATTTAATCATATTTTTTTGATAAGTT
Found at i:93448713 original size:17 final size:18
Alignment explanation
Indices: 93448687--93448720 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
93448677 TTTTTGTTTA
93448687 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
93448704 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
93448721 ATAGTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:93450573 original size:54 final size:54
Alignment explanation
Indices: 93450489--93450598 Score: 184
Period size: 54 Copynumber: 2.0 Consensus size: 54
93450479 GCAAAGAAAG
** *
93450489 TTGGTGCATTGAGGGTGATTATTTTGAAGGTCTGATACAAGCTAAGTCTAGGGT
1 TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGGGT
*
93450543 TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTATGGT
1 TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGGGT
93450597 TT
1 TT
93450599 AAAAGCCTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.25, C:0.11, G:0.29, T:0.35
Consensus pattern (54 bp):
TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGGGT
Found at i:93464482 original size:31 final size:31
Alignment explanation
Indices: 93464444--93464508 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
93464434 CCTTTTCATA
*
93464444 TTTCATATTTCATAACACTGGGTCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
93464475 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
93464506 TTT
1 TTT
93464509 ACTATAAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:93464777 original size:23 final size:23
Alignment explanation
Indices: 93464723--93464865 Score: 250
Period size: 23 Copynumber: 6.1 Consensus size: 23
93464713 CCTAGCCTCT
* *
93464723 TTTAATAACTGGGGCAAAAGTCCT
1 TTTAATAACTGGGGCATAAG-CCC
93464747 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
93464770 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
93464793 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
93464816 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
93464840 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
93464863 TTT
1 TTT
93464866 TTCACTTTCT
Statistics
Matches: 116, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
23 74 0.64
24 42 0.36
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:93464806 original size:70 final size:70
Alignment explanation
Indices: 93464723--93464865 Score: 268
Period size: 70 Copynumber: 2.0 Consensus size: 70
93464713 CCTAGCCTCT
*
93464723 TTTAATAACTGGGGCAAAAGTCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
93464788 AGCCC
66 AGCCC
*
93464793 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
93464858 AGCCC
66 AGCCC
93464863 TTT
1 TTT
93464866 TTCACTTTCT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (70 bp):
TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
AGCCC
Found at i:93464866 original size:47 final size:47
Alignment explanation
Indices: 93464716--93464866 Score: 259
Period size: 47 Copynumber: 3.2 Consensus size: 47
93464706 TTGGAGGCCT
* *
93464716 AGCCTCTTTTAATAACTGGGGCAAAAGTCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAG-CCCTTTAATAACTGGGGCATA
93464765 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
93464811 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
93464858 AGCCCTTTT
1 AGCCCTTTT
93464867 TCACTTTCTC
Statistics
Matches: 99, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
46 25 0.25
47 69 0.70
48 1 0.01
49 4 0.04
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
Found at i:93464945 original size:20 final size:20
Alignment explanation
Indices: 93464920--93464982 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
93464910 GAATACAGCG
93464920 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
93464940 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
93464960 TGTGCATATCATACATACCA
1 TGTGCATATCATACATATCA
93464980 TGT
1 TGT
93464983 TTTTCAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:93468089 original size:23 final size:23
Alignment explanation
Indices: 93468059--93468105 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
93468049 TTAGAATTAG
93468059 ATAGTTTTGAAGCTAAGTTTAAT
1 ATAGTTTTGAAGCTAAGTTTAAT
*
93468082 ATAGTTTTGAAGTTAAGTTTAAT
1 ATAGTTTTGAAGCTAAGTTTAAT
93468105 A
1 A
93468106 AATTAAACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (23 bp):
ATAGTTTTGAAGCTAAGTTTAAT
Found at i:93469317 original size:13 final size:13
Alignment explanation
Indices: 93469301--93469335 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
93469291 TAAAACTAAA
93469301 AATTAACTAAATT
1 AATTAACTAAATT
93469314 AATTAACTAAATT
1 AATTAACTAAATT
93469327 AATTAACTA
1 AATTAACTA
93469336 TGAACATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (13 bp):
AATTAACTAAATT
Found at i:93469385 original size:23 final size:22
Alignment explanation
Indices: 93469358--93469400 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
93469348 ATAACAATTC
*
93469358 AAGAAAATAAACAATTACCAACT
1 AAGAAAAGAAACAA-TACCAACT
*
93469381 AAGAAACGAAACAATACCAA
1 AAGAAAAGAAACAATACCAA
93469401 GGAAAGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.63, C:0.19, G:0.07, T:0.12
Consensus pattern (22 bp):
AAGAAAAGAAACAATACCAACT
Found at i:93474273 original size:12 final size:12
Alignment explanation
Indices: 93474256--93474283 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
93474246 GGTAATCTAA
93474256 TATATATATATT
1 TATATATATATT
93474268 TATATATATATT
1 TATATATATATT
93474280 TATA
1 TATA
93474284 CTTAGCTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TATATATATATT
Found at i:93491114 original size:15 final size:14
Alignment explanation
Indices: 93491094--93491149 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 14
93491084 GATGTGGTAT
93491094 CTTGGATTTCTGTA
1 CTTGGATTTCTGTA
* *
93491108 CCTTGGATATCTTTA
1 -CTTGGATTTCTGTA
93491123 TCTTGGATTCCTCTGT-
1 -CTTGGATT--TCTGTA
93491139 CTTGGATTTCT
1 CTTGGATTTCT
93491150 TTATTATAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 3 0.09
15 27 0.79
17 4 0.12
ACGTcount: A:0.12, C:0.20, G:0.18, T:0.50
Consensus pattern (14 bp):
CTTGGATTTCTGTA
Done.