Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 277 of 362
Found at i:93491127 original size:30 final size:29
Alignment explanation
Indices: 93491091--93491153 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 29
93491081 TATGATGTGG
93491091 TATCTTGGATT-TCTGTACCTTGGATATCTT
1 TATCTTGGATTCTCTGT--CTTGGATATCTT
*
93491121 TATCTTGGATTCCTCTGTCTTGGATTTCTT
1 TATCTTGGATT-CTCTGTCTTGGATATCTT
93491151 TAT
1 TAT
93491154 TATAGTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 25 0.83
32 5 0.17
ACGTcount: A:0.14, C:0.17, G:0.16, T:0.52
Consensus pattern (29 bp):
TATCTTGGATTCTCTGTCTTGGATATCTT
Found at i:93502346 original size:46 final size:46
Alignment explanation
Indices: 93501991--93502355 Score: 507
Period size: 46 Copynumber: 8.0 Consensus size: 46
93501981 ACTTTCTGAC
*
93501991 ATGAAATGTGTAAGACCATGGTTGAAGGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
93502037 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
93502083 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
93502129 ATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
93502175 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
93502221 ATAAAATGTGTAAGATCATGGTTGAAAGATACCATGGTAACATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** * *
93502266 CGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * * * * *
93502312 AAAAAATGGGAAAGACCATAGTTGAAAAACACCATGGCATCATG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
93502356 TCAAAGATAA
Statistics
Matches: 285, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 36 0.13
46 249 0.87
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:93502657 original size:16 final size:17
Alignment explanation
Indices: 93502636--93502668 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93502626 ATAATGGAGC
93502636 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
93502652 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
93502669 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:93515854 original size:18 final size:18
Alignment explanation
Indices: 93515814--93515866 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
93515804 TGGCCCATTA
*
93515814 CAGTAATAGTAAACACTG
1 CAGTAATAGTAAACAGTG
* *
93515832 TAGTAATAGTAATCAGTG
1 CAGTAATAGTAAACAGTG
* *
93515850 CAGTAACAGTAAGCAGT
1 CAGTAATAGTAAACAGT
93515867 ATGCAAGTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.25
Consensus pattern (18 bp):
CAGTAATAGTAAACAGTG
Found at i:93516219 original size:27 final size:27
Alignment explanation
Indices: 93516189--93516394 Score: 218
Period size: 27 Copynumber: 7.6 Consensus size: 27
93516179 ATATAGGGGA
** *
93516189 AAAACAGTCATCCTACCACATAAGGGT
1 AAAACAGTCATTTTACCACATAAGGGC
* *
93516216 AAAATAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
93516243 AAAACCGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
93516270 AAAATC-GTCATTTTAACACATAAGGGC
1 AAAA-CAGTCATTTTACCACATAAGGGC
* *
93516297 AAAACATTCATTTTATCACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
* * *
93516324 AAAACCGTCATTTTATCACATAAAGG-
1 AAAACAGTCATTTTACCACATAAGGGC
** * *
93516350 AAAATTTGTTATTTTAACACATAAGGGC
1 AAAA-CAGTCATTTTACCACATAAGGGC
* *
93516378 AAAATAATCATTTTACC
1 AAAACAGTCATTTTACC
93516395 TTATAGGGGT
Statistics
Matches: 152, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 5 0.03
27 142 0.93
28 5 0.03
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATAAGGGC
Found at i:93516415 original size:27 final size:27
Alignment explanation
Indices: 93516385--93516501 Score: 164
Period size: 27 Copynumber: 4.3 Consensus size: 27
93516375 GGCAAAATAA
* *
93516385 TCATTTTACCTTATAGGGGTATTAT-AG
1 TCATTTTACCCTATAGGGGTATT-TCGG
* *
93516412 TCATTTTACCCCATGGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGG
*
93516439 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGG
*
93516466 CCATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGG
93516493 TCATTTTAC
1 TCATTTTAC
93516502 AAGTAAATAA
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 80 0.99
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTTCGG
Found at i:93516419 original size:81 final size:81
Alignment explanation
Indices: 93516205--93516395 Score: 276
Period size: 81 Copynumber: 2.4 Consensus size: 81
93516195 GTCATCCTAC
* * *
93516205 CACATAAGGGTAAAATAGTCATTTTACCTCATAAGGGCAAAACCGTCATTTTACCACATAAGGGC
1 CACATAAGGGCAAAATAATCATTTTACCTCATAAGGGCAAAACCGTCATTTTACCACATAAAGGC
93516270 AAAATCGTCATTTTAA
66 AAAATCGTCATTTTAA
* * * * *
93516286 CACATAAGGGCAAAACATTCATTTTATCACATAAGGGCAAAACCGTCATTTTATCACATAAAGG-
1 CACATAAGGGCAAAATAATCATTTTACCTCATAAGGGCAAAACCGTCATTTTACCACATAAAGGC
* *
93516350 AAAATTTGTTATTTTAA
66 AAAA-TCGTCATTTTAA
93516367 CACATAAGGGCAAAATAATCATTTTACCT
1 CACATAAGGGCAAAATAATCATTTTACCT
93516396 TATAGGGGTA
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 4 0.04
81 92 0.96
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (81 bp):
CACATAAGGGCAAAATAATCATTTTACCTCATAAGGGCAAAACCGTCATTTTACCACATAAAGGC
AAAATCGTCATTTTAA
Found at i:93520189 original size:46 final size:47
Alignment explanation
Indices: 93520135--93520246 Score: 156
Period size: 46 Copynumber: 2.4 Consensus size: 47
93520125 TTTCGTGTTA
* *
93520135 ATGCCATGTCCCAGACATGTCTTACACT-GGCTTACGTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCCCT-CGTCTCGAGGCCG
* * *
93520182 ATG-CATGTCCCGGACATGTCTTACACTAGCCCTCGTCTCGATGCTG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCGAGGCCG
93520228 ATGCCATGTCCCAGACATG
1 ATGCCATGTCCCAGACATG
93520247 GTCATTGGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 37 0.65
47 20 0.35
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCGAGGCCG
Found at i:93526624 original size:3 final size:3
Alignment explanation
Indices: 93526616--93526645 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
93526606 TTCATTAAAT
*
93526616 AAG AAG AAG AAG AAG AAT AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
93526646 TTCTAAGCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:93528940 original size:25 final size:25
Alignment explanation
Indices: 93528910--93528960 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
93528900 TTTTACTGTA
93528910 TTAGTTTAACATCGAGTTTTTAAGC
1 TTAGTTTAACATCGAGTTTTTAAGC
93528935 TTAGTTTAACATCGAGTTTTTAAGC
1 TTAGTTTAACATCGAGTTTTTAAGC
93528960 T
1 T
93528961 AACTCAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (25 bp):
TTAGTTTAACATCGAGTTTTTAAGC
Found at i:93530734 original size:38 final size:38
Alignment explanation
Indices: 93530626--93530719 Score: 143
Period size: 38 Copynumber: 2.5 Consensus size: 38
93530616 ATTTCCAATT
* *
93530626 ACAGCTCTTATGAGTAAATTGGTGTATTATTGGATAAA
1 ACAGCTCTTATGAGTAAATTGGTCTATTATCGGATAAA
* * *
93530664 ATAGCTCTTATGAGCAAATTGGTCTATTATCGGATGAA
1 ACAGCTCTTATGAGTAAATTGGTCTATTATCGGATAAA
93530702 ACAGCTCTTATGAGTAAA
1 ACAGCTCTTATGAGTAAA
93530720 CTAGCTTGTT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (38 bp):
ACAGCTCTTATGAGTAAATTGGTCTATTATCGGATAAA
Found at i:93536894 original size:40 final size:40
Alignment explanation
Indices: 93536810--93537031 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
93536800 AAACCAAGTA
** * *
93536810 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
93536849 ACTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
93536889 CCTTCGGGACTTAGCCCGGTTAAAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
93536929 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
93536969 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
93537009 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
93537032 CAATCCGAAT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 155 0.93
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:93544164 original size:40 final size:40
Alignment explanation
Indices: 93544079--93544339 Score: 384
Period size: 40 Copynumber: 6.6 Consensus size: 40
93544069 AAACCAAGTA
** * *
93544079 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
93544118 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
93544158 CTTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
93544198 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
93544238 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
93544278 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
93544317 CCTTCGGGACTTAGCCTGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
93544340 CAATCCGAAT
Statistics
Matches: 206, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 50 0.24
40 156 0.76
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:93559397 original size:44 final size:42
Alignment explanation
Indices: 93559345--93559446 Score: 134
Period size: 44 Copynumber: 2.4 Consensus size: 42
93559335 CCGATATGTA
*
93559345 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT-TTGAG
1 ATTTCGTGTAAGACCATGTCTGGGACATCGGCATC-ATATT-AG
* *
93559388 ATTTACGTGTAAGACCATGTCTGGGGCATCGGCATCATATTTG
1 ATTT-CGTGTAAGACCATGTCTGGGACATCGGCATCATATTAG
93559431 ATTTTCGTGTAAGACC
1 A-TTTCGTGTAAGACC
93559447 CTATTTGGGA
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
43 19 0.36
44 34 0.64
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
ATTTCGTGTAAGACCATGTCTGGGACATCGGCATCATATTAG
Found at i:93567654 original size:22 final size:21
Alignment explanation
Indices: 93567624--93567666 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
93567614 TTATGAAACA
* *
93567624 TATGTTTTGGTATGACTTTGGT
1 TATGATTTGGCATGA-TTTGGT
93567646 TATGATTTGGCATGATTTGGT
1 TATGATTTGGCATGATTTGGT
93567667 ATGGATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.16, C:0.05, G:0.28, T:0.51
Consensus pattern (21 bp):
TATGATTTGGCATGATTTGGT
Found at i:93567673 original size:11 final size:10
Alignment explanation
Indices: 93567624--93567669 Score: 56
Period size: 10 Copynumber: 4.4 Consensus size: 10
93567614 TTATGAAACA
*
93567624 TATGTTTTGG
1 TATGATTTGG
93567634 TATGACTTTGG
1 TATGA-TTTGG
93567645 TTATGATTTGG
1 -TATGATTTGG
*
93567656 CATGATTTGG
1 TATGATTTGG
93567666 TATG
1 TATG
93567670 GATTATAAGC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
10 16 0.52
11 10 0.32
12 5 0.16
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.50
Consensus pattern (10 bp):
TATGATTTGG
Found at i:93570264 original size:21 final size:21
Alignment explanation
Indices: 93570204--93570264 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 21
93570194 ACCTAAACCT
* *
93570204 AAACTTGTAACCTGT-AACCCT
1 AAACTCGTAACCT-TAAACCCA
*
93570225 AAAC-CCTACACCTTTAAACCCA
1 AAACTCGTA-ACC-TTAAACCCA
93570247 AAACTCGTAACCTTAAAC
1 AAACTCGTAACCTTAAAC
93570265 GCTTGAACCC
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
20 2 0.06
21 14 0.44
22 13 0.41
23 3 0.09
ACGTcount: A:0.39, C:0.33, G:0.05, T:0.23
Consensus pattern (21 bp):
AAACTCGTAACCTTAAACCCA
Found at i:93572038 original size:40 final size:40
Alignment explanation
Indices: 93571971--93572257 Score: 355
Period size: 40 Copynumber: 7.2 Consensus size: 40
93571961 CCTTCGGAGT
** * * *
93571971 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGCAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
93572010 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
93572050 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * **
93572089 TTAGCCCGGATATAATAGCTCGCACAAACACCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * * *
93572129 TTAGCCTGGATAAAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
93572169 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
** * *
93572209 TTAGCCCGGA-ATAAGCCACTAGCACAAATGCTTTCGGGAC
1 TTAGCCCGGATAT-AGTAACTCGCACAAATGCCTTCGGGAC
93572249 TTAGCCCGG
1 TTAGCCCGG
93572258 TTATCATCCG
Statistics
Matches: 221, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
39 44 0.20
40 177 0.80
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:93580272 original size:40 final size:40
Alignment explanation
Indices: 93580205--93580491 Score: 373
Period size: 40 Copynumber: 7.2 Consensus size: 40
93580195 CCTTCGGAGT
** * * *
93580205 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGCAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
93580244 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
93580284 TTAGCCCGG-TATAATAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
93580323 TTAGCCCGGATATAATAGCTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
93580363 TTAGCCCGGATAAAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
93580403 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
** * *
93580443 TTAGCCCGGA-ATTAGCCACTAGCACAAATGCTTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
93580483 TTAGCCCGG
1 TTAGCCCGG
93580492 TTATCATCCG
Statistics
Matches: 225, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 42 0.19
40 183 0.81
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:93583249 original size:33 final size:34
Alignment explanation
Indices: 93583212--93583275 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 34
93583202 AAAAAAATCC
* *
93583212 TAAACCCTACTTTAAA-AAATAAAAACCTAACCT
1 TAAACCCTAATTTAAATAAACAAAAACCTAACCT
*
93583245 TAAACCCTAATTTAAATAAACAAAACCCTAA
1 TAAACCCTAATTTAAATAAACAAAAACCTAA
93583276 TCCTAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 15 0.56
34 12 0.44
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.23
Consensus pattern (34 bp):
TAAACCCTAATTTAAATAAACAAAAACCTAACCT
Found at i:93583286 original size:21 final size:21
Alignment explanation
Indices: 93583246--93583286 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
93583236 ACCTAACCTT
*
93583246 AAACCCTAATTTAAATAAACA
1 AAACCCTAATCTAAATAAACA
93583267 AAACCCTAATCCTAAA-AAAC
1 AAACCCTAAT-CTAAATAAAC
93583287 GACATTGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.20
Consensus pattern (21 bp):
AAACCCTAATCTAAATAAACA
Found at i:93586323 original size:42 final size:40
Alignment explanation
Indices: 93586260--93586391 Score: 122
Period size: 42 Copynumber: 3.1 Consensus size: 40
93586250 ATACATGTAG
93586260 TCAAATATCGATGCCATTGTCCCAGATAGGGTCTTACACGAAA
1 TCAAATA-CGATGCCA-TGTCCCAGA-AGGGTCTTACACGAAA
* * *
93586303 TCAAATACGATGCCGATGTCCCAGACATGGTATTACATGTAAA
1 TCAAATACGATGCC-ATGTCCCAGA-AGGGTCTTACACG-AAA
* *
93586346 TCTCAAAT-CGATGCCAACGTCCCAGACGTGGTCTTACACGAAA
1 --TCAAATACGATGCC-ATGTCCCAGAAG-GGTCTTACACGAAA
93586389 TCA
1 TCA
93586392 CATATCAAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
41 3 0.04
42 26 0.35
43 14 0.19
44 25 0.34
45 6 0.08
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (40 bp):
TCAAATACGATGCCATGTCCCAGAAGGGTCTTACACGAAA
Found at i:93587653 original size:18 final size:18
Alignment explanation
Indices: 93587630--93587667 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
93587620 AGGGATTTTT
93587630 GTCCTCGAAAATTTTACC
1 GTCCTCGAAAATTTTACC
93587648 GTCCTCGAAAATTTTACC
1 GTCCTCGAAAATTTTACC
93587666 GT
1 GT
93587668 TGAACAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (18 bp):
GTCCTCGAAAATTTTACC
Found at i:93592159 original size:18 final size:18
Alignment explanation
Indices: 93592109--93592176 Score: 73
Period size: 18 Copynumber: 3.8 Consensus size: 18
93592099 CTTGGCCCAT
* * *
93592109 TGCAATAACAGTAAACAA
1 TGCAGTAACAATAAACAG
* * *
93592127 TGCAGAAATAGTAAACAG
1 TGCAGTAACAATAAACAG
*
93592145 TGCAGTAACAATAAATAG
1 TGCAGTAACAATAAACAG
93592163 TGCAGTAACAATAA
1 TGCAGTAACAATAA
93592177 GTAGTATGCA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.19
Consensus pattern (18 bp):
TGCAGTAACAATAAACAG
Found at i:93592181 original size:18 final size:18
Alignment explanation
Indices: 93592138--93592181 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
93592128 GCAGAAATAG
*
93592138 TAAACAGTGCAGTAACAA
1 TAAATAGTGCAGTAACAA
93592156 TAAATAGTGCAGTAACAA
1 TAAATAGTGCAGTAACAA
*
93592174 TAAGTAGT
1 TAAATAGT
93592182 ATGCAAGTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (18 bp):
TAAATAGTGCAGTAACAA
Found at i:93592545 original size:27 final size:27
Alignment explanation
Indices: 93592512--93592645 Score: 196
Period size: 27 Copynumber: 5.0 Consensus size: 27
93592502 ATCGCATAGA
*
93592512 GGCAAAACAATCATTTTACCATATAAG
1 GGCAAAACAATCATTTTACCACATAAG
* *
93592539 GGTAAAACAGTCATTTTACCACATAAG
1 GGCAAAACAATCATTTTACCACATAAG
*
93592566 GGTAAAACAATCATTTTACCACATAAG
1 GGCAAAACAATCATTTTACCACATAAG
* * *
93592593 GGCAAAATAGTCATTTTATCACATAAG
1 GGCAAAACAATCATTTTACCACATAAG
*
93592620 GGCAAAACAATCATCTTACCACATAA
1 GGCAAAACAATCATTTTACCACATAA
93592646 AGGGGTCTAG
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.25
Consensus pattern (27 bp):
GGCAAAACAATCATTTTACCACATAAG
Found at i:93614957 original size:20 final size:20
Alignment explanation
Indices: 93614932--93614972 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
93614922 ATCTGTCACA
93614932 TAAAAAT-TGCGATCATATGT
1 TAAAAATATGCGATCA-ATGT
*
93614952 TAAAAATATGTGATCAATGT
1 TAAAAATATGCGATCAATGT
93614972 T
1 T
93614973 GGGAATGCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (20 bp):
TAAAAATATGCGATCAATGT
Found at i:93616616 original size:23 final size:23
Alignment explanation
Indices: 93616572--93616676 Score: 97
Period size: 23 Copynumber: 4.5 Consensus size: 23
93616562 CAAGTTGATG
93616572 AACAGTAAGCTCTATATTGAGCTGA
1 AACAGTAAGCTC--TATTGAGCTGA
*
93616597 AACGGTAAGCTCTATTGAGCTG-
1 AACAGTAAGCTCTATTGAGCTGA
*
93616619 AACAGTAAGCTC-ATACGAGCTGA
1 AACAGTAAGCTCTAT-TGAGCTGA
* * * * *
93616642 AACTGTAAGCTCCAATGAGTTTAA
1 AACAGTAAGCTCTATTGAG-CTGA
93616666 AACAGTAAGCT
1 AACAGTAAGCT
93616677 TTTACGAACT
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
21 2 0.03
22 17 0.25
23 24 0.36
24 13 0.19
25 11 0.16
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTGA
Found at i:93616638 original size:22 final size:24
Alignment explanation
Indices: 93616572--93616653 Score: 107
Period size: 23 Copynumber: 3.5 Consensus size: 24
93616562 CAAGTTGATG
93616572 AACAGTAAGCTCTATATTGAGCTGA
1 AACAGTAAGCTC-ATATTGAGCTGA
*
93616597 AACGGTAAGCTC-TATTGAGCTG-
1 AACAGTAAGCTCATATTGAGCTGA
*
93616619 AACAGTAAGCTCATA-CGAGCTGA
1 AACAGTAAGCTCATATTGAGCTGA
*
93616642 AACTGTAAGCTC
1 AACAGTAAGCTC
93616654 CAATGAGTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
22 17 0.33
23 23 0.45
25 11 0.22
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (24 bp):
AACAGTAAGCTCATATTGAGCTGA
Found at i:93616670 original size:47 final size:47
Alignment explanation
Indices: 93616572--93616676 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 47
93616562 CAAGTTGATG
* * * *
93616572 AACAGTAAGCTCTATATTGAGCTGAAACGGTAAGCTCTATTGAGCTG
1 AACAGTAAGCTCTATATCGAGCTGAAACGGTAAGCTCCAATGAGCTA
* *
93616619 AACAGTAAGCTC-ATA-CGAGCTGAAACTGTAAGCTCCAATGAGTTTAA
1 AACAGTAAGCTCTATATCGAGCTGAAACGGTAAGCTCCAATGAG-CT-A
93616666 AACAGTAAGCT
1 AACAGTAAGCT
93616677 TTTACGAACT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
45 23 0.46
46 4 0.08
47 23 0.46
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (47 bp):
AACAGTAAGCTCTATATCGAGCTGAAACGGTAAGCTCCAATGAGCTA
Found at i:93627153 original size:46 final size:46
Alignment explanation
Indices: 93627086--93627259 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
93627076 TGTAACCCGC
93627086 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
93627132 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * * *
93627182 CTC-T---CGAACTCGGACTC-ACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
93627224 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
93627260 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 6, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
41 3 0.03
42 5 0.05
43 1 0.01
45 12 0.11
46 65 0.59
47 12 0.11
48 1 0.01
49 1 0.01
50 6 0.05
51 4 0.04
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:93627225 original size:92 final size:93
Alignment explanation
Indices: 93627094--93627263 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
93627084 GCCCATAAGT
* *
93627094 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
93627159 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
93627187 GAACTCGGACTC-ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
93627251 CGAGTTCGGATGC
66 CGAGCTCGGATGC
93627264 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 60 0.83
93 12 0.17
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:93627279 original size:46 final size:45
Alignment explanation
Indices: 93627091--93627279 Score: 156
Period size: 46 Copynumber: 4.1 Consensus size: 45
93627081 CCCGCCCATA
** *
93627091 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-ACATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACATCC-T
93627136 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACATC-CT
* * *** *
93627186 --CGAACTCGGACTC-ACTCAACGAGTTCGGACATTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACATCC-T
*
93627228 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAA-CATCCT
93627275 AGTGA
1 AGTGA
93627280 CATGTCACTT
Statistics
Matches: 115, Mismatches: 14, Indels: 28
0.73 0.09 0.18
Matches are distributed among these distances:
41 1 0.01
42 5 0.04
45 13 0.11
46 70 0.61
47 14 0.12
48 5 0.04
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACATCCT
Found at i:93631130 original size:93 final size:93
Alignment explanation
Indices: 93631018--93631188 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
93631008 GCCCATAAGT
* *
93631018 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93631083 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
93631111 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
93631176 CGAGTTCGGATGC
66 CGAGCTCGGATGC
93631189 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:93631185 original size:46 final size:46
Alignment explanation
Indices: 93631010--93631185 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
93631000 TGTAACCCGC
* *
93631010 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
93631056 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
93631102 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
93631149 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
93631186 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:93632948 original size:39 final size:39
Alignment explanation
Indices: 93632894--93633137 Score: 281
Period size: 39 Copynumber: 6.0 Consensus size: 39
93632884 AAGACACTGA
* *
93632894 AAATGTATCCGGGCTAAAGTCTCGTAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
93632933 AAATGTATCCAGGCTAAAGTCCCGCAAGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
93632972 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
93633011 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGGGGACTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCA----------GG-CTTCGTGCTGG
* *
93633061 AAATGTATCCAGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
93633100 AAATGTATCCGGGCCAAAGTCCCACAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
93633138 ATAATATAAT
Statistics
Matches: 177, Mismatches: 17, Indels: 22
0.82 0.08 0.10
Matches are distributed among these distances:
39 140 0.79
40 2 0.01
49 2 0.01
50 33 0.19
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:93633080 original size:50 final size:50
Alignment explanation
Indices: 93633000--93633095 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
93632990 GTCCCGCAGG
* *
93633000 CTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGGGGA
1 CTTCGTGCTGGAAATATATCCAGACCAAAGTCCCGCAGGCTTCGTGGGGA
* *
93633050 CTTCGTGCTGGAAATGTATCCAGACTAAAGTCCCGCAGGCTTCGTG
1 CTTCGTGCTGGAAATATATCCAGACCAAAGTCCCGCAGGCTTCGTG
93633096 CTGGAAATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (50 bp):
CTTCGTGCTGGAAATATATCCAGACCAAAGTCCCGCAGGCTTCGTGGGGA
Found at i:93633112 original size:89 final size:89
Alignment explanation
Indices: 93632961--93633130 Score: 295
Period size: 89 Copynumber: 1.9 Consensus size: 89
93632951 GTCCCGCAAG
* *
93632961 CTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCC
1 CTTCGTGCTGGAAATATATCCAGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCC
*
93633026 AAAGTCCCGCAGGCTTCGTGGGGA
66 AAAGTCCCACAGGCTTCGTGGGGA
* *
93633050 CTTCGTGCTGGAAATGTATCCAGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCC
1 CTTCGTGCTGGAAATATATCCAGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCC
93633115 AAAGTCCCACAGGCTT
66 AAAGTCCCACAGGCTT
93633131 TGTGCTGATA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 76 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (89 bp):
CTTCGTGCTGGAAATATATCCAGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCC
AAAGTCCCACAGGCTTCGTGGGGA
Found at i:93637766 original size:13 final size:13
Alignment explanation
Indices: 93637748--93637783 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
93637738 TAAATCTTTG
93637748 ATGTTTGATTTTC
1 ATGTTTGATTTTC
93637761 ATGTTTGATTTTC
1 ATGTTTGATTTTC
93637774 ATGTTTGATT
1 ATGTTTGATT
93637784 AAGTGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.06, G:0.17, T:0.61
Consensus pattern (13 bp):
ATGTTTGATTTTC
Found at i:93638803 original size:39 final size:39
Alignment explanation
Indices: 93638728--93639037 Score: 489
Period size: 39 Copynumber: 8.0 Consensus size: 39
93638718 GCAAGACACT
93638728 GAAATGTATCC-GGCTAAAGT-CCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
93638765 GAAATGTATCCGGGCTAAAGTCCTGTAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
93638804 GAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* * *
93638843 GAAATATATTCGGGCCAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
93638882 GAAATGTATCTGGACTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
93638921 GAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
93638960 GAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
93638999 GAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
93639038 ATAATATAAT
Statistics
Matches: 251, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
37 11 0.04
38 9 0.04
39 231 0.92
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:93639467 original size:22 final size:22
Alignment explanation
Indices: 93639439--93639485 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
93639429 TCAATTGAAC
93639439 TAAAGCTGATAGTGAAGCATTT
1 TAAAGCTGATAGTGAAGCATTT
93639461 TAAAGCTGATAGTGAAGCATTT
1 TAAAGCTGATAGTGAAGCATTT
93639483 TAA
1 TAA
93639486 TGCCTATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (22 bp):
TAAAGCTGATAGTGAAGCATTT
Found at i:93643454 original size:15 final size:15
Alignment explanation
Indices: 93643430--93643460 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
93643420 TATTTTTCTT
93643430 TATATAAAATATTTA
1 TATATAAAATATTTA
*
93643445 TATATCAAATATTTA
1 TATATAAAATATTTA
93643460 T
1 T
93643461 TTTCTCCACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
TATATAAAATATTTA
Found at i:93645448 original size:31 final size:31
Alignment explanation
Indices: 93645405--93645474 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
93645395 GGTTTATCAG
* * *
93645405 TTTTCAAGGAAGACACGCCTTATAGGATGCA
1 TTTTCAATGAAGACACGCCCTATAGAATGCA
93645436 TTTTCAATGAAGACACGCCCTATAGAATGCA
1 TTTTCAATGAAGACACGCCCTATAGAATGCA
93645467 TTTTCAAT
1 TTTTCAAT
93645475 TTCTCTATCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (31 bp):
TTTTCAATGAAGACACGCCCTATAGAATGCA
Found at i:93657052 original size:21 final size:21
Alignment explanation
Indices: 93657023--93657071 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
93657013 AAAAACCCAG
*
93657023 TTTTCAAGTTCTGAGA-TCCTA
1 TTTTCAAGTTCCGAGACT-CTA
*
93657044 TTTTTAAGTTCCGAGACTCTA
1 TTTTCAAGTTCCGAGACTCTA
93657065 TTTTCAA
1 TTTTCAA
93657072 AACATATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.45
Consensus pattern (21 bp):
TTTTCAAGTTCCGAGACTCTA
Found at i:93657631 original size:49 final size:49
Alignment explanation
Indices: 93657558--93657690 Score: 140
Period size: 49 Copynumber: 2.7 Consensus size: 49
93657548 GTGTGGGCTT
* * * * *** **
93657558 GAAAATATCTTATGTTCCTTAGCCATTCTGATAAGTGTGTTAAGTGTGA
1 GAAAATATTTTATATTTCTCAGCCATTCTGATAAGCACGTTAAGTGCAA
* *
93657607 GAAAATTTTTTATATTTCTCAGCCATTCTAATAAGCACGTTAAGTGCAA
1 GAAAATATTTTATATTTCTCAGCCATTCTGATAAGCACGTTAAGTGCAA
* * *
93657656 GAACATATTTTATGTTTCTCAGCCATTTTGATAAG
1 GAAAATATTTTATATTTCTCAGCCATTCTGATAAG
93657691 ATAAGTATTT
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
49 68 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (49 bp):
GAAAATATTTTATATTTCTCAGCCATTCTGATAAGCACGTTAAGTGCAA
Found at i:93670553 original size:46 final size:45
Alignment explanation
Indices: 93670503--93670677 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
93670493 TGGTTGAGCA
93670503 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
93670549 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
93670595 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
93670641 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93670678 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:93670657 original size:92 final size:92
Alignment explanation
Indices: 93670500--93670670 Score: 315
Period size: 92 Copynumber: 1.9 Consensus size: 92
93670490 GGATGGTTGA
* *
93670500 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93670565 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
93670592 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93670657 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
93670671 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:93676674 original size:28 final size:29
Alignment explanation
Indices: 93676643--93676712 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
93676633 TAATAAGCCT
*
93676643 GCACACTTAGTGCT-TA-ATAATCGAACTC
1 GCACACTTAGTGCTATACA-AATCGAACCC
* *
93676671 GCACACTTAGTGCTATACAATTTGAACCC
1 GCACACTTAGTGCTATACAAATCGAACCC
93676700 GCACACTTAGTGC
1 GCACACTTAGTGC
93676713 CAATCTCATG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 14 0.38
29 22 0.59
30 1 0.03
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCTATACAAATCGAACCC
Found at i:93679926 original size:40 final size:40
Alignment explanation
Indices: 93679857--93679950 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
93679847 CTATCTCGGT
* *
93679857 ATCGCACACTTAGTGCCTCGTATAGCCAAAACTATTCCAT
1 ATCGCACACTTAGTGCCTCGTATAACCAAAACTATTCCAA
* * ** *
93679897 TTTGCACACTTAGTG-CTATTTATAACCAAAACTATTTCAA
1 ATCGCACACTTAGTGCCT-CGTATAACCAAAACTATTCCAA
93679937 ATCGCACACTTAGT
1 ATCGCACACTTAGT
93679951 ACCGAACATA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
39 2 0.05
40 42 0.95
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCTCGTATAACCAAAACTATTCCAA
Found at i:93681820 original size:21 final size:21
Alignment explanation
Indices: 93681794--93681842 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
93681784 CAAAACCCTG
93681794 TTTTCAAGTTCTGAGA-TCCTA
1 TTTTCAAGTTCTGAGACT-CTA
*
93681815 TTTTCAAGTTCTGATACTCTA
1 TTTTCAAGTTCTGAGACTCTA
93681836 TTTTCAA
1 TTTTCAA
93681843 AACATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.47
Consensus pattern (21 bp):
TTTTCAAGTTCTGAGACTCTA
Found at i:93687775 original size:22 final size:22
Alignment explanation
Indices: 93687750--93687805 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
93687740 CCCAAGGCCA
93687750 TAAACATGATAGCACATAG-CTG
1 TAAACATGATAGCACATAGTC-G
*
93687772 TAAACAGGATAGCACATAGTCG
1 TAAACATGATAGCACATAGTCG
*
93687794 TAAACATCATAG
1 TAAACATGATAG
93687806 AAATGTGCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 29 0.97
23 1 0.03
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (22 bp):
TAAACATGATAGCACATAGTCG
Found at i:93688266 original size:41 final size:41
Alignment explanation
Indices: 93688207--93688329 Score: 192
Period size: 41 Copynumber: 3.0 Consensus size: 41
93688197 TAAAAGCCAC
*
93688207 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
* * *
93688248 CGGTGGATCCACGATCGTCGAGCAACCATGTGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
**
93688289 TAGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
93688330 TTCTTCCTCC
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:93688639 original size:27 final size:27
Alignment explanation
Indices: 93688609--93688926 Score: 207
Period size: 27 Copynumber: 11.8 Consensus size: 27
93688599 GTATTTCGAA
* ** *
93688609 AATTTTGCAAACCAATAGTATTTCTGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
*
93688636 AATTTTTG-AAAGTCAAGGGTATTTTTAT
1 AA-TTTTGCAAA-TCAAGGGTATTTTTGT
*
93688664 AATTTTGTAAATCAAGGGTATTTTTGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
*
93688691 AATTTTCCAAATCAAGGGTATTTTTGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
* * * *
93688718 AATTTT-CTAAATTAGGGGTATTGTGGT
1 AATTTTGC-AAATCAAGGGTATTTTTGT
* * *
93688745 AATTTTACAAATCGAGGGTA-TTTCGAT
1 AATTTTGCAAATCAAGGGTATTTTTG-T
* * * * **
93688772 AATTTTACAAGTCGAGGGCATTTCAGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
** * *
93688799 AATTTCACAAATTAGGGGTA-TTTTGTT
1 AATTTTGCAAATCAAGGGTATTTTTG-T
* * * *
93688826 AATTTTACAAACCAGGGGTA-TTTTGG
1 AATTTTGCAAATCAAGGGTATTTTTGT
* * *
93688852 AATTTTACAAACCAAGGGTA-TTTGGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
* * ** *
93688878 AATTTTTCTAATTGAGGGTATTTTGGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
* *
93688905 AATTTTGTAAACCAAGGGTATT
1 AATTTTGCAAATCAAGGGTATT
93688927 CAGTAACTTT
Statistics
Matches: 235, Mismatches: 47, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
26 45 0.19
27 165 0.70
28 25 0.11
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.42
Consensus pattern (27 bp):
AATTTTGCAAATCAAGGGTATTTTTGT
Found at i:93688656 original size:55 final size:54
Alignment explanation
Indices: 93688593--93688713 Score: 143
Period size: 55 Copynumber: 2.2 Consensus size: 54
93688583 AATCTACAAC
* **
93688593 TCAAGGGTATTTCGAAAATTTTGCAAACCAATAGTATTTCTGTAATTTTTGAAA
1 TCAAGGGTATTTCGAAAATTTTGCAAACCAAGAGTATTTCTGTAATTTTCCAAA
** * * * * *
93688647 GTCAAGGGTATTTTTATAATTTTGTAAATCAAGGGTATTTTTGTAATTTTCCAAA
1 -TCAAGGGTATTTCGAAAATTTTGCAAACCAAGAGTATTTCTGTAATTTTCCAAA
93688702 TCAAGGGTATTT
1 TCAAGGGTATTT
93688714 TTGTAATTTT
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
54 12 0.21
55 44 0.79
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.42
Consensus pattern (54 bp):
TCAAGGGTATTTCGAAAATTTTGCAAACCAAGAGTATTTCTGTAATTTTCCAAA
Found at i:93688729 original size:54 final size:53
Alignment explanation
Indices: 93688568--93688953 Score: 226
Period size: 54 Copynumber: 7.2 Consensus size: 53
93688558 TTCACCCTAA
* * * * * * * *
93688568 AAGGGTGTTTTGGTAAATCTACAACTCAAGGGTATTTCGAAAATTTTGC-AAACC
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTG-TAATTTT-CTAAATC
** * ** * *
93688622 AATAGTATTTCTGTAATTTTTGAAAGTCAAGGGTATTTTTATAATTTTGTAAATC
1 AAGGGTATTTTTGTAATTTTACAAA-TCAAGGGTA-TTTTGTAATTTTCTAAATC
* *
93688677 AAGGGTATTTTTGTAATTTTCCAAATCAAGGGTATTTTTGTAATTTTCTAAATT
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTA-TTTTGTAATTTTCTAAATC
* * * * * *
93688731 AGGGGTATTGTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTAC-AAGTC
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTG-TAATTTT-CTAAATC
* * ** * * * *
93688785 GAGGGCATTTCAGTAATTTCACAAATTAGGGGTATTTTGTTAATTTTAC-AAACC
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTG-TAATTTT-CTAAATC
* * * * *
93688839 AGGGGTA-TTTTGGAATTTTACAAACCAAGGGTATTTGGTAATTTTTCT-AATT
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGTAA-TTTTCTAAATC
* * ** * ** *
93688891 GAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTCAGTAACTTTT-TAAACC
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGTAA-TTTTCTAAATC
*
93688944 AATGGTATTT
1 AAGGGTATTT
93688954 CAGTAATTCT
Statistics
Matches: 252, Mismatches: 71, Indels: 19
0.74 0.21 0.06
Matches are distributed among these distances:
52 12 0.05
53 73 0.29
54 124 0.49
55 40 0.16
56 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGTAATTTTCTAAATC
Found at i:93688775 original size:81 final size:80
Alignment explanation
Indices: 93688570--93688961 Score: 303
Period size: 81 Copynumber: 4.9 Consensus size: 80
93688560 CACCCTAAAA
* * * * * * **
93688570 GGGTGTTTTGGTAAATCTACAACTCAAGGGTATTTCGAAAATTTTGCAAACCAATAGTATTTCTG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCG-TAATTTTACAAACCAAGGGTATTTCTG
* *
93688635 TAATTTT-TGAAAGTCAA
65 TAATTTTCT-AAA-TTAG
** ** * * * *
93688652 GGGTATTTTTATAATTTTGTAAATCAAGGGTATTTTTGTAATTTTCCAAATCAAGGGTATTTTTG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTA-TTTCGTAATTTTACAAACCAAGGGTATTTCTG
93688717 TAATTTTCTAAATTAG
65 TAATTTTCTAAATTAG
* * ** * * *
93688733 GGGTATTGTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAGTCGAGGGCATTTCAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCG-TAATTTTACAAACCAAGGGTATTTCTG
*
93688798 TAA-TTTCACAAATTAG
65 TAATTTTC-TAAATTAG
* * * * * *
93688814 GGGTATTTTGTTAATTTTACAAACCAGGGGTATTTTGGAATTTTACAAACCAAGGGTATTT-GGT
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGTAATTTTACAAACCAAGGGTATTTCTGT
93688878 AATTTTTCT-AATT-G
66 AA-TTTTCTAAATTAG
** * * *
93688892 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTCAGTAACTTTT-TAAACCAATGGTATTTC
1 -GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTC-GTAA-TTTTACAAACCAAGGGTATTTC
*
93688955 AGTAATT
63 TGTAATT
93688962 CTACCCCACA
Statistics
Matches: 247, Mismatches: 53, Indels: 23
0.76 0.16 0.07
Matches are distributed among these distances:
78 3 0.01
79 55 0.22
80 35 0.14
81 94 0.38
82 55 0.22
83 5 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGTAATTTTACAAACCAAGGGTATTTCTGT
AATTTTCTAAATTAG
Found at i:93688937 original size:27 final size:26
Alignment explanation
Indices: 93688594--93688961 Score: 106
Period size: 27 Copynumber: 13.7 Consensus size: 26
93688584 ATCTACAACT
* *
93688594 CAAGGGTATTTC-GAAAATTTTGCAAAC
1 CAAGGGTATTTCAG-TAATTTT-TAAAC
** * *
93688621 CAATAGTATTTCTGTAATTTTTGAAAGT
1 CAAGGGTATTTCAGTAATTTTT-AAA-C
* *
93688649 CAAGGGTATTTTTA-TAATTTTGTAAAT
1 CAAGGGTA-TTTCAGTAATTTT-TAAAC
** * *
93688676 CAAGGGTATTTTTGTAATTTTCCAAAT
1 CAAGGGTATTTCAGTAATTTT-TAAAC
** *
93688703 CAAGGGTATTTTTGTAATTTTCTAAAT
1 CAAGGGTATTTCAGTAATTTT-TAAAC
* * * * *
93688730 TAGGGGTATTGT-GGTAATTTTACAAAT
1 CAAGGGTATT-TCAGTAATTTT-TAAAC
* *
93688757 CGAGGGTATTTC-GATAA-TTTTACAAGT
1 CAAGGGTATTTCAG-TAATTTTTA-AA-C
* * ** *
93688784 CGAGGGCATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTCAGTAATTT-TTAAAC
* * * *
93688811 TAGGGGTATTT-TGTTAATTTTACAAAC
1 CAAGGGTATTTCAG-TAATTTT-TAAAC
* * * *
93688838 CAGGGGTATTT-TGGAATTTTACAAAC
1 CAAGGGTATTTCAGTAATTTT-TAAAC
* * *
93688864 CAAGGGTATTT-GGTAATTTTTCTAAT
1 CAAGGGTATTTCAGTAATTTTT-AAAC
** **
93688890 TGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTT-TAAAC
93688917 CAAGGGTA-TTCAGTAACTTTTTAAAC
1 CAAGGGTATTTCAGTAA-TTTTTAAAC
*
93688943 CAATGGTATTTCAGTAATT
1 CAAGGGTATTTCAGTAATT
93688962 CTACCCCACA
Statistics
Matches: 271, Mismatches: 49, Indels: 43
0.75 0.13 0.12
Matches are distributed among these distances:
25 1 0.00
26 72 0.27
27 169 0.62
28 24 0.09
29 5 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (26 bp):
CAAGGGTATTTCAGTAATTTTTAAAC
Found at i:93688951 original size:53 final size:52
Alignment explanation
Indices: 93688825--93688953 Score: 134
Period size: 53 Copynumber: 2.5 Consensus size: 52
93688815 GGTATTTTGT
* * **
93688825 TAATTTTACAAACCAGGGGTATTTTGGAATTTTACAAACCAAGGGTATTTGG
1 TAATTTTTCAAACCAAGGGTATTTTGGAATTTTACAAACCAAGGGTATTCAG
* *** **
93688877 TAATTTTTCTAATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTCAG
1 TAATTTTTCAAACCAAGGGTATTTTGG-AATTTTACAAACCAAGGGTATTCAG
*
93688930 TAACTTTTT-AAACCAATGGTATTT
1 TAA-TTTTTCAAACCAAGGGTATTT
93688954 CAGTAATTCT
Statistics
Matches: 60, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
52 21 0.35
53 34 0.57
54 5 0.08
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (52 bp):
TAATTTTTCAAACCAAGGGTATTTTGGAATTTTACAAACCAAGGGTATTCAG
Found at i:93688978 original size:27 final size:27
Alignment explanation
Indices: 93688947--93689041 Score: 127
Period size: 27 Copynumber: 3.5 Consensus size: 27
93688937 TTAAACCAAT
*
93688947 GGTATTTCAGTAATTCTACCCCACAAG
1 GGTATTTCAGTAATTCTACCCTACAAG
* * *
93688974 AGTATTTCAGCAATTCTATCCTACAAG
1 GGTATTTCAGTAATTCTACCCTACAAG
* * *
93689001 GGCATTTCAGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTACAAG
93689028 GGTATTTCAGTAAT
1 GGTATTTCAGTAAT
93689042 ATTAGCCTAC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTACAAG
Found at i:93689051 original size:54 final size:54
Alignment explanation
Indices: 93688950--93689052 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
93688940 AACCAATGGT
*
93688950 ATTTCAGTAATTCTACCCCACAAGAGTATTTCAGCAATTCTATCCTACAAGGGC
1 ATTTCAGTAATTCTACCCCACAAGAGTATTTCAGCAATTCTAGCCTACAAGGGC
* * * * *
93689004 ATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATAT-TAGCCTACA
1 ATTTCAGTAATTCTACCCCACAAGAGTATTTCAGCAAT-TCTAGCCTACA
93689053 GATATGAGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 41 0.98
55 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (54 bp):
ATTTCAGTAATTCTACCCCACAAGAGTATTTCAGCAATTCTAGCCTACAAGGGC
Found at i:93696692 original size:55 final size:54
Alignment explanation
Indices: 93696632--93696740 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 54
93696622 TGTTAATTTG
* *
93696632 ACAGGTTCGACCACGAGTGT-TAGACACGGGCGTGTCGCACGCCCGTGCTGTTTTA
1 ACAGGTTCGACCACG-GT-TCTACACACGGGCGTGTCACACGCCCGTGCTGTTTTA
* * * *
93696687 ACAGGTTCGTCTACGGTTCCTCCACACGGGCGTGTCACACGCCCGTGTTGTTTT
1 ACAGGTTCGACCACGGTT-CTACACACGGGCGTGTCACACGCCCGTGCTGTTTT
93696741 TGTAGGCTCG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 1 0.02
54 2 0.04
55 43 0.93
ACGTcount: A:0.16, C:0.29, G:0.28, T:0.27
Consensus pattern (54 bp):
ACAGGTTCGACCACGGTTCTACACACGGGCGTGTCACACGCCCGTGCTGTTTTA
Found at i:93700473 original size:14 final size:13
Alignment explanation
Indices: 93700450--93700481 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
93700440 GGGATATCAA
93700450 AACAATAATTAAG
1 AACAATAATTAAG
93700463 AACACATAATTAAG
1 AACA-ATAATTAAG
93700477 AACAA
1 AACAA
93700482 GTTTAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:93705695 original size:11 final size:10
Alignment explanation
Indices: 93705667--93705706 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
93705657 TTGTTTTGTA
*
93705667 CATGATACGC
1 CATGATATGC
93705677 CATGATATGC
1 CATGATATGC
*
93705687 ACCTGATATGC
1 -CATGATATGC
93705698 CATGATATG
1 CATGATATG
93705707 TTCATATATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (10 bp):
CATGATATGC
Found at i:93705823 original size:24 final size:24
Alignment explanation
Indices: 93705750--93705834 Score: 109
Period size: 25 Copynumber: 3.5 Consensus size: 24
93705740 TGGAGGAAGT
93705750 TCAAAAGGGCTTTGCCCCAGTTTA
1 TCAAAAGGGCTTTGCCCCAGTTTA
*
93705774 CCGAAAAGGGCTTTGCCCCAGTTTA
1 TC-AAAAGGGCTTTGCCCCAGTTTA
*
93705799 TCAAAACGGGCTTTGCCCTAG-TTA
1 TCAAAA-GGGCTTTGCCCCAGTTTA
*
93705823 TTAAAAGAGGCT
1 TCAAAAG-GGCT
93705835 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
23 1 0.02
24 17 0.31
25 36 0.67
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (24 bp):
TCAAAAGGGCTTTGCCCCAGTTTA
Found at i:93706077 original size:31 final size:31
Alignment explanation
Indices: 93706042--93706125 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
93706032 CGTTTACAGT
93706042 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
93706073 AAAGGCTTTGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
93706104 AAAGGCCTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
93706126 TTGAGACTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:93713610 original size:10 final size:10
Alignment explanation
Indices: 93713595--93713634 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
93713585 CTGTTTTGTA
93713595 CATGATATGC
1 CATGATATGC
93713605 CATGATATGC
1 CATGATATGC
*
93713615 ACCTGATATGC
1 -CATGATATGC
93713626 CATGATATG
1 CATGATATG
93713635 TTCATATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (10 bp):
CATGATATGC
Found at i:93713711 original size:25 final size:25
Alignment explanation
Indices: 93713680--93713749 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
93713670 AAGGAAGTGC
93713680 AAAAGGGCTTTGCCCTAGTTTA-CAA
1 AAAAGGGCTTTGCCCTAGTTTATC-A
93713705 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTATCA
* * *
93713730 AAACGGGCTTTACCCCAGTT
1 AAAAGGGCTTTGCCCTAGTT
93713750 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 40 0.98
26 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTATCA
Found at i:93713751 original size:24 final size:23
Alignment explanation
Indices: 93713679--93713762 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 23
93713669 GAAGGAAGTG
93713679 CAAAAGGGCTTTGCCCTAGTT-T
1 CAAAAGGGCTTTGCCCTAGTTAT
93713701 ACAAAAAAGGGCTTTGCCCTAGTTTAT
1 -C--AAAAGGGCTTTGCCCTAG-TTAT
* *
93713728 CAAAACGGGCTTTACCCCAGTTAT
1 CAAAA-GGGCTTTGCCCTAGTTAT
*
93713752 TAAAAGAGGCT
1 CAAAAG-GGCT
93713763 AGGCCTTCAG
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
23 2 0.04
24 16 0.31
25 30 0.58
26 3 0.06
27 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (23 bp):
CAAAAGGGCTTTGCCCTAGTTAT
Found at i:93717502 original size:17 final size:15
Alignment explanation
Indices: 93717465--93717495 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
93717455 GCCACCTCAT
*
93717465 TTATATATCTTTTAC
1 TTATATATCTTTGAC
93717480 TTATATATCTTTGAC
1 TTATATATCTTTGAC
93717495 T
1 T
93717496 GTAATATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.13, G:0.03, T:0.58
Consensus pattern (15 bp):
TTATATATCTTTGAC
Found at i:93730884 original size:27 final size:27
Alignment explanation
Indices: 93730854--93731058 Score: 205
Period size: 27 Copynumber: 7.6 Consensus size: 27
93730844 ATATTAAGTC
* *
93730854 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
93730881 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
93730909 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
93730936 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
93730963 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
93730990 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** *
93731017 CGCACACTTAGTGCTACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
93731044 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93731059 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.83
28 26 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:93730993 original size:54 final size:54
Alignment explanation
Indices: 93730854--93731057 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
93730844 ATATTAAGTC
* * * **
93730854 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
93730909 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
93730963 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
* *
93731017 CGCACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
93731058 TGTACAATTT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:93731023 original size:81 final size:81
Alignment explanation
Indices: 93730908--93731057 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
93730898 ATAATCAAAC
* * * * * *
93730908 TCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
93730973 GTGCATCATTTTCATT
66 GTGCATCATTTTCATT
* *
93730989 TCGCACACTTAGTGCAACATGGTCAAATCGCACACTTAGTGCTACATAGCCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
93731054 GTGC
66 GTGC
93731058 TGTACAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
GTGCATCATTTTCATT
Found at i:93739026 original size:27 final size:27
Alignment explanation
Indices: 93738996--93739200 Score: 205
Period size: 27 Copynumber: 7.6 Consensus size: 27
93738986 ATATTAAGTC
* *
93738996 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
93739023 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
93739051 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
93739078 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
93739105 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
93739132 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** *
93739159 CGCACACTTAGTGCTACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
93739186 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93739201 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.83
28 26 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:93739135 original size:54 final size:54
Alignment explanation
Indices: 93738996--93739199 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
93738986 ATATTAAGTC
* * * **
93738996 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
93739051 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
93739105 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
* *
93739159 CGCACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
93739200 TGTACAATTT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:93739165 original size:81 final size:81
Alignment explanation
Indices: 93739050--93739199 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
93739040 ATAATCAAAC
* * * * * *
93739050 TCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
93739115 GTGCATCATTTTCATT
66 GTGCATCATTTTCATT
* *
93739131 TCGCACACTTAGTGCAACATGGTCAAATCGCACACTTAGTGCTACATAGCCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
93739196 GTGC
66 GTGC
93739200 TGTACAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
GTGCATCATTTTCATT
Found at i:93742455 original size:48 final size:48
Alignment explanation
Indices: 93742332--93742467 Score: 157
Period size: 48 Copynumber: 2.8 Consensus size: 48
93742322 TGAGGTCGAT
* ** * *
93742332 GCCATGTCCTAGACATGGTCTTACACTAGCTCTTGTCTCAATGCCGAT
1 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCAATGCCGAC
* * *
93742380 GCCATATCCCAGACATGGTCTTACACTGGCTCTCATATC-GTGGCCGAC
1 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCAAT-GCCGAC
* * *
93742428 GCTATGTCCTAGACATGGTCTTACACTGGCACACATATCA
1 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCA
93742468 CCCAAATGTC
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
47 1 0.01
48 72 0.99
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCAATGCCGAC
Found at i:93754738 original size:33 final size:33
Alignment explanation
Indices: 93754676--93754741 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
93754666 ATGCAATAAC
* **
93754676 AGTCTGGGCCAGAGCCCTATTCAGTAACAGTAT
1 AGTCTGGGCCAGAGCCCTATACAAAAACAGTAT
**
93754709 AGTCTGGGCCTTAGCCCTATACAAAAACAGTAT
1 AGTCTGGGCCAGAGCCCTATACAAAAACAGTAT
93754742 GGGCCTAAGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (33 bp):
AGTCTGGGCCAGAGCCCTATACAAAAACAGTAT
Found at i:93761661 original size:19 final size:19
Alignment explanation
Indices: 93761637--93761674 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
93761627 TGGGCCACGT
93761637 TGGGCCAAAATGGG-TCGTG
1 TGGGCC-AAATGGGCTCGTG
*
93761656 TGGGCCCAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
93761675 GGCCCTATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.16, C:0.21, G:0.42, T:0.21
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:93764974 original size:78 final size:78
Alignment explanation
Indices: 93764874--93765068 Score: 257
Period size: 78 Copynumber: 2.5 Consensus size: 78
93764864 TATTCCGTGT
* * * * *
93764874 AATCAGTGAATATTGCTCGTTTGAGCAAACATTCAGTATAATCAATGGATATCGCTCATTTGAGC
1 AATCAGTGGATATCGCTCGTTTGAGCAAACATTCAGTATAACCAATGGATATAGCTCATTTGAGA
93764939 AAACATTCAGTAA
66 AAACATTCAGTAA
* * * *
93764952 AATCAGTGGATATCACTTGTTTGAGCAAGCATTCAGTATAACCAATGGATATAGCTCGTTTGAGA
1 AATCAGTGGATATCGCTCGTTTGAGCAAACATTCAGTATAACCAATGGATATAGCTCATTTGAGA
* *
93765017 AAACATTTAGTAT
66 AAACATTCAGTAA
* * *
93765030 AATCAGTGGGTATCGCTCGTTTGAG-AAACTTTCAATATA
1 AATCAGTGGATATCGCTCGTTTGAGCAAACATTCAGTATA
93765069 TTCAGGTTGC
Statistics
Matches: 100, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
77 11 0.11
78 89 0.89
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.32
Consensus pattern (78 bp):
AATCAGTGGATATCGCTCGTTTGAGCAAACATTCAGTATAACCAATGGATATAGCTCATTTGAGA
AAACATTCAGTAA
Found at i:93765117 original size:37 final size:37
Alignment explanation
Indices: 93764884--93765318 Score: 271
Period size: 37 Copynumber: 11.6 Consensus size: 37
93764874 AATCAGTGAA
* *
93764884 TATTGCTCGTTTGAGCAAACATTCAGTATAATCAAT-GG
1 TATTGCTCTTTTGAGC--ACATTCAGTATAATCAGTAGG
* * *
93764922 ATATCGCTCATTTGAGCAAACATTCAGTAAAATCAGT-GG
1 -TATTGCTCTTTTGAGC--ACATTCAGTATAATCAGTAGG
** * *
93764961 ATATCACT-TGTTTGAGCAAGCATTCAGTATAACCAAT-GG
1 -TATTGCTCT-TTTGAGC-A-CATTCAGTATAATCAGTAGG
* * * * *
93765000 ATATAGCTCGTTTGAGAAAACATTTAGTATAATCAGTGGG
1 -TATTGCTCTTTTGAG--CACATTCAGTATAATCAGTAGG
* * * * * *
93765040 TATCGCTCGTTTGAGAAACTTTCAATATATTC---AGG
1 TATTGCTCTTTTGAG-CACATTCAGTATAATCAGTAGG
* * *
93765075 --TTGCTCTTTTGAGCACGTTCAGTATAACCAGTAGA
1 TATTGCTCTTTTGAGCACATTCAGTATAATCAGTAGG
* * * *
93765110 TATTGCTCATTTGAGCAACTTTTAGTACAATCAGTAGG
1 TATTGCTCTTTTGAGC-ACATTCAGTATAATCAGTAGG
* * ** * *
93765148 CATTGTTCTTTTGAGCATGTTTAGTATAATCAGTAGA
1 TATTGCTCTTTTGAGCACATTCAGTATAATCAGTAGG
* * * *
93765185 TATTGCT-TGTATGAGCACATTTAGCATAATCAATAGG
1 TATTGCTCT-TTTGAGCACATTCAGTATAATCAGTAGG
* *
93765222 TATTGCTCGTTTGAGCACATAT-AGTATAATTAGTAGG
1 TATTGCTCTTTTGAGCACAT-TCAGTATAATCAGTAGG
* *
93765259 TATTGCTCATTTGTGCACATTCAGTATAATCAGTAGG
1 TATTGCTCTTTTGAGCACATTCAGTATAATCAGTAGG
*
93765296 TATTGCTCGTTTGAGCACATTCA
1 TATTGCTCTTTTGAGCACATTCA
93765319 ACATTTAACT
Statistics
Matches: 319, Mismatches: 61, Indels: 34
0.77 0.15 0.08
Matches are distributed among these distances:
32 11 0.03
33 11 0.03
35 4 0.01
36 2 0.01
37 139 0.44
38 45 0.14
39 104 0.33
40 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (37 bp):
TATTGCTCTTTTGAGCACATTCAGTATAATCAGTAGG
Found at i:93765130 original size:70 final size:72
Alignment explanation
Indices: 93765025--93765191 Score: 176
Period size: 75 Copynumber: 2.3 Consensus size: 72
93765015 GAAAACATTT
* * * * * *
93765025 AGTATAATCAGTGGGTATCGCTCGTTTGAGAAACTTTCAATATATTC-AGG-TTGCTCTTTTGAG
1 AGTATAATCAGTAGATATTGCTCATTTGAGAAACTTTCAATACAATCAAGGATTGCTCTTTTGAG
93765088 CACGTTC
66 CACGTTC
* * * * *
93765095 AGTATAACCAGTAGATATTGCTCATTTGAGCAACTTTTAGTACAATCAGTAGGCATTGTTCTTTT
1 AGTATAATCAGTAGATATTGCTCATTTGAGAAACTTTCAATACAATCA--AGG-ATTGCTCTTTT
* *
93765160 GAGCATGTTT
63 GAGCACGTTC
93765170 AGTATAATCAGTAGATATTGCT
1 AGTATAATCAGTAGATATTGCT
93765192 TGTATGAGCA
Statistics
Matches: 78, Mismatches: 14, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
70 37 0.47
73 3 0.04
75 38 0.49
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (72 bp):
AGTATAATCAGTAGATATTGCTCATTTGAGAAACTTTCAATACAATCAAGGATTGCTCTTTTGAG
CACGTTC
Found at i:93777338 original size:25 final size:25
Alignment explanation
Indices: 93777286--93777342 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
93777276 GTTATCAATT
* *
93777286 TCAGCTCGTATGAGCTTAACGATTC
1 TCAGCTCGCATGAGCTTAACGATAC
*
93777311 TCAGCTCGCATGAGCTTATC-ATCAC
1 TCAGCTCGCATGAGCTTAACGAT-AC
93777336 TCAGCTC
1 TCAGCTC
93777343 AGAGGAGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 2 0.07
25 26 0.93
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.30
Consensus pattern (25 bp):
TCAGCTCGCATGAGCTTAACGATAC
Found at i:93782854 original size:42 final size:42
Alignment explanation
Indices: 93782798--93782881 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
93782788 CAAAAGTAGC
*
93782798 ATGCTATATGTTAAAGATGCTTGATTGCTATGAAATTAAAAG
1 ATGCTATATATTAAAGATGCTTGATTGCTATGAAATTAAAAG
93782840 ATGCTATATATTAAAGATGCTTGATTGCTATGAAATTAAAAG
1 ATGCTATATATTAAAGATGCTTGATTGCTATGAAATTAAAAG
93782882 CTGAAAATCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (42 bp):
ATGCTATATATTAAAGATGCTTGATTGCTATGAAATTAAAAG
Found at i:93783971 original size:42 final size:43
Alignment explanation
Indices: 93783859--93784035 Score: 130
Period size: 43 Copynumber: 4.1 Consensus size: 43
93783849 AGGATTACGG
* * * * *
93783859 TATGTGATTTCGTGTAAGACCAC-ATCTGGGACGTTGGCATCGA
1 TATGAGATTTCATGTAAGACC-CTGTCTAGGACATTGGCATCGA
* * *
93783902 TTTGAGATTTACATGTAAGAACATGTCTAGGACATTGGCATCG-
1 TATGAGATTT-CATGTAAGACCCTGTCTAGGACATTGGCATCGA
*
93783945 TAT-ACGATTTCATGTAAGACCCTGTCTAGGACAGTGGCATCGA
1 TATGA-GATTTCATGTAAGACCCTGTCTAGGACATTGGCATCGA
* ** ** * * *
93783988 CATTTGATAACATGTAAGACCAC-GTCTTGGACGTTGGCATTG-
1 TATGAGATTTCATGTAAGACC-CTGTCTAGGACATTGGCATCGA
93784030 TATGAG
1 TATGAG
93784036 TTTACAAGCT
Statistics
Matches: 105, Mismatches: 23, Indels: 13
0.74 0.16 0.09
Matches are distributed among these distances:
42 33 0.31
43 46 0.44
44 26 0.25
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TATGAGATTTCATGTAAGACCCTGTCTAGGACATTGGCATCGA
Found at i:93784026 original size:43 final size:41
Alignment explanation
Indices: 93783871--93784027 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 41
93783861 TGTGATTTCG
* *
93783871 TGTAAGACCACATCTGGGACGTTGGCATCGATTTGAGATTTACA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATTT--GA-TTACA
* * * ** *
93783915 TGTAAGAACATGTCTAGGACATTGGCATCGTATACGATTTCA
1 TGTAAGACCACGTCTAGGACGTTGGCATCG-ATTTGATTACA
*
93783957 TGTAAGACC-CTGTCTAGGACAG-TGGCATCGACATTTGATAACA
1 TGTAAGACCAC-GTCTAGGAC-GTTGGCATCG--ATTTGATTACA
*
93784000 TGTAAGACCACGTCTTGGACGTTGGCAT
1 TGTAAGACCACGTCTAGGACGTTGGCAT
93784028 TGTATGAGTT
Statistics
Matches: 90, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 30 0.33
43 32 0.36
44 26 0.29
45 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (41 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCGATTTGATTACA
Found at i:93784617 original size:91 final size:91
Alignment explanation
Indices: 93784499--93784697 Score: 326
Period size: 91 Copynumber: 2.2 Consensus size: 91
93784489 TATATGGCAT
* *
93784499 GTATGGGCTAGTGATGTTATGATATGTGTTATGTGAATTTCTTGCCATGTTATATGGTACGCATA
1 GTATAGGCTAGTGATGTTATGATATGTGTTATGTGAATTTCTTGCCATGTTATATGGTACGAATA
**
93784564 TGATTGAGACTATGGGGTTGGTTTTG
66 TGATTGAGACTATGGAATTGGTTTTG
*
93784590 GTATAGGCTAGTGATGTTATGATATGTGTTATGTGAATTTCTTGCCATGTTATATGGTATGAATA
1 GTATAGGCTAGTGATGTTATGATATGTGTTATGTGAATTTCTTGCCATGTTATATGGTACGAATA
*
93784655 TGATTGATACTATGGAATTGGTTTTG
66 TGATTGAGACTATGGAATTGGTTTTG
*
93784681 GTATAGACTATGTGATG
1 GTATAGGCTA-GTGATG
93784698 GAAAAAGGTT
Statistics
Matches: 100, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 94 0.94
92 6 0.06
ACGTcount: A:0.24, C:0.07, G:0.28, T:0.42
Consensus pattern (91 bp):
GTATAGGCTAGTGATGTTATGATATGTGTTATGTGAATTTCTTGCCATGTTATATGGTACGAATA
TGATTGAGACTATGGAATTGGTTTTG
Found at i:93792884 original size:40 final size:40
Alignment explanation
Indices: 93792839--93793030 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
93792829 ATAACCACAA
* * *
93792839 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
93792879 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
93792919 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
93792959 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
93792999 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
93793031 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:93792923 original size:80 final size:80
Alignment explanation
Indices: 93792810--93793029 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
93792800 ACCCAAGTTT
* * * * * * * * *
93792810 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
93792873 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
93792889 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
93792953 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
93792969 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
93793030 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:93799641 original size:40 final size:40
Alignment explanation
Indices: 93799596--93799747 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
93799586 ATAACCACAA
* * *
93799596 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
93799636 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
93799676 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
93799716 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
93799748 CATTCAAATG
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:93815325 original size:15 final size:14
Alignment explanation
Indices: 93815303--93815370 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 14
93815293 GAAAAACCGA
93815303 ATAAAGAAATCCAAG
1 ATAAAGAAATCC-AG
* *
93815318 ATAGAGAAACCCAG
1 ATAAAGAAATCCAG
93815332 AATAAAGAAATCCAG
1 -ATAAAGAAATCCAG
93815347 AATAAAGAAGATCCAG
1 -ATAAAGAA-ATCCAG
93815363 AT-AAGAAA
1 ATAAAGAAA
93815371 CCCAAGATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
13 1 0.02
14 7 0.15
15 33 0.70
16 6 0.13
ACGTcount: A:0.59, C:0.13, G:0.16, T:0.12
Consensus pattern (14 bp):
ATAAAGAAATCCAG
Found at i:93815335 original size:30 final size:31
Alignment explanation
Indices: 93815301--93815379 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
93815291 AAGAAAAACC
*
93815301 GAATAAAGAAATCCAAGATAGAGAA-ACCCA
1 GAATAAAGAAATCCAAGATAAAGAAGACCCA
*
93815331 GAATAAAGAAATCC-AGAATAAAGAAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAGACCCA
*
93815362 G-AT-AAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
93815380 TGATACTATG
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
29 13 0.30
30 25 0.58
31 5 0.12
ACGTcount: A:0.57, C:0.15, G:0.16, T:0.11
Consensus pattern (31 bp):
GAATAAAGAAATCCAAGATAAAGAAGACCCA
Found at i:93821432 original size:58 final size:58
Alignment explanation
Indices: 93821342--93821458 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
93821332 AATCATCGAT
*
93821342 CCTTTTCAAGGGATACTTGTTCTTCACAGTCGCTTTGTTGAGCTGTCGATAGTCTATG
1 CCTTTGCAAGGGATACTTGTTCTTCACAGTCGCTTTGTTGAGCTGTCGATAGTCTATG
*
93821400 CCTTTGCAAGGGATACTTGTTCTTCACAGTCGCTTTGTTGAGCTGTCGGTAGTCTATG
1 CCTTTGCAAGGGATACTTGTTCTTCACAGTCGCTTTGTTGAGCTGTCGATAGTCTATG
93821458 C
1 C
93821459 ACAATCTCAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.16, C:0.21, G:0.24, T:0.38
Consensus pattern (58 bp):
CCTTTGCAAGGGATACTTGTTCTTCACAGTCGCTTTGTTGAGCTGTCGATAGTCTATG
Found at i:93823722 original size:39 final size:39
Alignment explanation
Indices: 93823677--93823855 Score: 283
Period size: 39 Copynumber: 4.6 Consensus size: 39
93823667 ATAGCCGTTA
93823677 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATT
*
93823716 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATT
93823755 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGGATT
* * *
93823795 T-GTAACTCGCACCAATGCCTTCGGGCTT-AGCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATT
*
93823832 TAGTATCTCGCAC-AATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
93823856 ATCTTAGTCC
Statistics
Matches: 132, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
37 19 0.14
38 13 0.10
39 86 0.65
40 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATT
Found at i:93823772 original size:78 final size:77
Alignment explanation
Indices: 93823677--93823906 Score: 288
Period size: 78 Copynumber: 3.0 Consensus size: 77
93823667 ATAGCCGTTA
93823677 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGA
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATTT-GTAACTCGCACAAATGCCTTCGGA
*
93823742 CTTAACCCGGATT
65 CTTAACCCGGAAT
* *
93823755 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGTAACTCGCACCAATGCCTTCGGG
1 TAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGGATTTGTAACTCGCACAAATGCCTTCGGA
*
93823820 CTT-AGCCGGAAT
65 CTTAACCCGGAAT
* * ** * *
93823832 TAGTATCTCGCAC-AATGCCTTCGGATCTTAGTCCGGATATGGT-ACTTAGCACAAA-GCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGG-GCTTAACCCGGAT-TTGTAAC-TCGCACAAATGCCTTCG
*
93823894 GACTTAGCCCGGA
63 GACTTAACCCGGA
93823907 CATCATTCGA
Statistics
Matches: 133, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
76 34 0.26
77 34 0.26
78 51 0.38
79 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (77 bp):
TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGATTTGTAACTCGCACAAATGCCTTCGGAC
TTAACCCGGAAT
Found at i:93830036 original size:15 final size:15
Alignment explanation
Indices: 93830016--93830084 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
93830006 GTATCTTGGG
93830016 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
93830031 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
93830046 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
93830061 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
93830076 TTTCTTTAT
1 TTTCTTTAT
93830085 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:93830085 original size:30 final size:30
Alignment explanation
Indices: 93830007--93830094 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
93829997 CATAGTATCG
* * * *
93830007 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
93830037 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
93830067 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
93830095 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:93832525 original size:46 final size:45
Alignment explanation
Indices: 93832472--93832647 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
93832462 TATTTGGGCA
93832472 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
93832518 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
93832565 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
93832611 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93832648 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:93832627 original size:93 final size:93
Alignment explanation
Indices: 93832468--93832639 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
93832458 AGGATATTTG
* *
93832468 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
93832533 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
93832561 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
93832626 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
93832640 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:93836393 original size:49 final size:50
Alignment explanation
Indices: 93836271--93836407 Score: 145
Period size: 49 Copynumber: 2.8 Consensus size: 50
93836261 TACGAGATGG
* * *
93836271 GTCAGTGTAAGACCCTGTCTGGGGCATGGTATCAGCATGGATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGTATCAGCATCGATATGTGAGA
** * * *
93836321 G-CTAGTGTAAGATTATGTCTGGGACATGGTGTCAGCCTCGAT-T-TCGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGTATCAGCATCGATATGT-GAGA
* *
93836370 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 GTCAGTGTAAGACCATGTCTGGGACATGGTATCAGCAT
93836408 TATACTCTGT
Statistics
Matches: 70, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
48 1 0.01
49 35 0.50
50 34 0.49
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGTATCAGCATCGATATGTGAGA
Found at i:93843373 original size:68 final size:67
Alignment explanation
Indices: 93843301--93843450 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
93843291 CATCATGTGT
* * * *
93843301 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
93843363 ATGTAG
62 ATGTAG
** * *
93843369 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
93843434 AG
66 AG
93843436 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
93843451 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:93843406 original size:64 final size:64
Alignment explanation
Indices: 93843325--93843508 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
93843315 AGACATTATG
* *
93843325 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
93843389 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
93843454 AA
63 AA
* * * *
93843456 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
93843509 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:93864606 original size:7 final size:7
Alignment explanation
Indices: 93864570--93864632 Score: 54
Period size: 7 Copynumber: 9.0 Consensus size: 7
93864560 TAATTATTTT
93864570 ACCTTGA
1 ACCTTGA
* *
93864577 AACTCGA
1 ACCTTGA
* *
93864584 ACCCTAA
1 ACCTTGA
*
93864591 ACGTTGA
1 ACCTTGA
93864598 ACCTTGA
1 ACCTTGA
*
93864605 ACCTTAA
1 ACCTTGA
*
93864612 ACCTTAA
1 ACCTTGA
*
93864619 ATCTTGA
1 ACCTTGA
93864626 ACCTTGA
1 ACCTTGA
93864633 GGTTTGAGAT
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (7 bp):
ACCTTGA
Found at i:93864606 original size:21 final size:21
Alignment explanation
Indices: 93864570--93864628 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
93864560 TAATTATTTT
*
93864570 ACCTTGAAACTCGAACCCTAA
1 ACCTTGAAACTTGAACCCTAA
* * *
93864591 ACGTTGAACCTTGAACCTTAA
1 ACCTTGAAACTTGAACCCTAA
93864612 ACCTT-AAATCTTGAACC
1 ACCTTGAAA-CTTGAACC
93864629 TTGAGGTTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
20 2 0.06
21 29 0.94
ACGTcount: A:0.36, C:0.29, G:0.10, T:0.25
Consensus pattern (21 bp):
ACCTTGAAACTTGAACCCTAA
Found at i:93868117 original size:16 final size:16
Alignment explanation
Indices: 93868098--93868136 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
93868088 GTTATCATAT
* *
93868098 TTTTTATTTTTCATTCT
1 TTTTTATTGTT-ATTCA
93868115 TTTTTATTGTTATTCA
1 TTTTTATTGTTATTCA
93868131 TTTTTA
1 TTTTTA
93868137 AAATTTCGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTTATTGTTATTCA
Found at i:93868119 original size:17 final size:16
Alignment explanation
Indices: 93868097--93868136 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
93868087 CGTTATCATA
*
93868097 TTTTTTATTTTTCATTC
1 TTTTTTATTGTT-ATTC
93868114 TTTTTTATTGTTATTC
1 TTTTTTATTGTTATTC
*
93868130 ATTTTTA
1 TTTTTTA
93868137 AAATTTCGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.15, C:0.07, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTTTTATTGTTATTC
Found at i:93871823 original size:27 final size:27
Alignment explanation
Indices: 93871783--93871836 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
93871773 CTCATACAGC
* *
93871783 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
93871810 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
93871837 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:93874301 original size:15 final size:15
Alignment explanation
Indices: 93874226--93874298 Score: 69
Period size: 15 Copynumber: 4.9 Consensus size: 15
93874216 AAAAAAAAAC
*
93874226 CCAAGATAGAGAAAT
1 CCAAGATAAAGAAAT
* * *
93874241 CTAAGATAGAG-AAG
1 CCAAGATAAAGAAAT
*
93874255 CCCAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
93874271 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
93874286 CCATGAT-AAGAAA
1 CCAAGATAAAGAAA
93874299 ATCGAATTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
14 11 0.23
15 31 0.65
16 6 0.12
ACGTcount: A:0.55, C:0.14, G:0.18, T:0.14
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:93878442 original size:27 final size:27
Alignment explanation
Indices: 93878412--93878465 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
93878402 TCATACAACC
* *
93878412 CATGTAAGAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
93878439 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
93878466 TCACATGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:93883299 original size:44 final size:42
Alignment explanation
Indices: 93883251--93883367 Score: 155
Period size: 44 Copynumber: 2.7 Consensus size: 42
93883241 TATGTGTTTG
93883251 CGTGTAAGACCATGTCTGGGACATTGGCATC-CACTTATGATTT
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGCA-TT-TGATTT
** *
93883294 ACGTGTAAGACCATGTCTGGGACATCAGCATCGTATTTGATTT
1 -CGTGTAAGACCATGTCTGGGACATTGGCATCGCATTTGATTT
* *
93883337 CGTGTAAGACCTTGTCTGGGACAGTGGCATC
1 CGTGTAAGACCATGTCTGGGACATTGGCATC
93883368 AATATTTGGT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 27 0.42
43 6 0.09
44 31 0.48
45 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGCATTTGATTT
Found at i:93890957 original size:44 final size:42
Alignment explanation
Indices: 93890907--93891042 Score: 139
Period size: 44 Copynumber: 3.2 Consensus size: 42
93890897 TGTGTTTGCG
* *
93890907 TGTAAGACCACGTCTAGGACATTGGCATCG-ACTTATGATTTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGTA-TT-TGATTT-CA
** *
93890951 TGTAAGACCATGTCTGGGACATCAGCATCGTATTTGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTCA
* * * * *
93890993 TGTAAGACCTTGTCTGGGACAGTGGCATCAATATTTGGTTACA
1 TGTAAGACCATGTCTGGGACATTGGCATC-GTATTTGATTTCA
93891036 TGTAAGA
1 TGTAAGA
93891043 TCACGTCAGG
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
42 26 0.34
43 22 0.29
44 28 0.36
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTCA
Found at i:93891042 original size:43 final size:42
Alignment explanation
Indices: 93890946--93891042 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
93890936 GACTTATGAT
*
93890946 TTACATGTAAGACCATGTCTGGGACATCAGCATCGTATTTGA
1 TTACATGTAAGACCATGTCTGGGACATCAGCATCATATTTGA
* * * * *
93890988 TTTCGTGTAAGACCTTGTCTGGGACAGT-GGCATCAATATTTGG
1 TTACATGTAAGACCATGTCTGGGACA-TCAGCATC-ATATTTGA
93891031 TTACATGTAAGA
1 TTACATGTAAGA
93891043 TCACGTCAGG
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
42 28 0.62
43 17 0.38
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACATCAGCATCATATTTGA
Found at i:93893218 original size:40 final size:39
Alignment explanation
Indices: 93893167--93893432 Score: 437
Period size: 40 Copynumber: 6.8 Consensus size: 39
93893157 AAATATAGCT
*
93893167 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATAGTA
**
93893207 GTTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATAGTA
93893247 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTA
93893286 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTA
93893324 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-TAGTA
*
93893364 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-TAGTA
*
93893404 ACTAGCACAAATGCCTT-GGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
93893433 CGTTATCATC
Statistics
Matches: 217, Mismatches: 7, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
38 38 0.18
39 51 0.24
40 128 0.59
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTA
Found at i:93893363 original size:117 final size:120
Alignment explanation
Indices: 93893167--93893432 Score: 443
Period size: 117 Copynumber: 2.2 Consensus size: 120
93893157 AAATATAGCT
* **
93893167 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
93893232 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-TAGTA
66 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
93893286 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GA-ATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
*
93893349 AGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
66 AGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
93893404 ACTAGCACAAATGCCTT-GGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
93893433 CGTTATCATC
Statistics
Matches: 140, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
116 1 0.01
117 88 0.63
118 22 0.16
119 29 0.21
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (120 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:93901291 original size:40 final size:39
Alignment explanation
Indices: 93901229--93901482 Score: 363
Period size: 40 Copynumber: 6.5 Consensus size: 39
93901219 AAACCAAGTA
* * *
93901229 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAG-TAACTCGCACAAATG
**
93901268 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
93901308 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
93901348 CCTTCGGGACTTAGCCC-GAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
93901386 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
* *
93901426 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
93901466 CCTTC-GGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
93901483 TTACATCCGA
Statistics
Matches: 202, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
38 36 0.18
39 30 0.15
40 136 0.67
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
Found at i:93901412 original size:78 final size:79
Alignment explanation
Indices: 93901229--93901482 Score: 374
Period size: 78 Copynumber: 3.2 Consensus size: 79
93901219 AAACCAAGTA
* * *
93901229 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATA
**
93901292 GTAGTTCGCACAAATG
64 GTAACTCGCACAAATG
93901308 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GAATAGT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGT
93901372 AACTCGCACAAATG
66 AACTCGCACAAATG
93901386 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-TA
* *
93901450 GTCACTAGCACAAATG
64 GTAACTCGCACAAATG
93901466 CCTTC-GGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
93901483 TTACATCCGA
Statistics
Matches: 163, Mismatches: 7, Indels: 10
0.91 0.04 0.06
Matches are distributed among these distances:
77 1 0.01
78 72 0.44
79 30 0.18
80 60 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGT
AACTCGCACAAATG
Found at i:93901463 original size:118 final size:119
Alignment explanation
Indices: 93901229--93901482 Score: 374
Period size: 118 Copynumber: 2.2 Consensus size: 119
93901219 AAACCAAGTA
* * * *
93901229 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
** *
93901294 AGTTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
93901348 CCTTCGGGACTTAGCCCGA-ATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAGCCCGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
*
93901410 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
64 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
93901466 CCTTC-GGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
93901483 TTACATCCGA
Statistics
Matches: 124, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
117 15 0.12
118 93 0.75
119 16 0.13
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:93909778 original size:39 final size:39
Alignment explanation
Indices: 93909712--93909935 Score: 237
Period size: 39 Copynumber: 5.7 Consensus size: 39
93909702 TATTCGATGA
* ** * *
93909712 TAATTCGGGCTAAGTCCATAAGTCATTTGTGCTAGTGAC
1 TAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC
* *
93909751 TAATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC
*
93909790 TAATTCCGGGCTAAGT-CCGAAGGCATTTGGTGCGACGTTATC
1 TAA-TCCGGGCTAAGTCCCGAAGGCATTT-GTGCGA-GTGA-C
*
93909832 T-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTGT-A-
1 TAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC
*
93909868 TATAT-CGGGCTAAGT-CCGAAGGCATTGTGTGCGACT-AC
1 TA-ATCCGGGCTAAGTCCCGAAGGCATT-TGTGCGAGTGAC
*
93909906 TATATCCGGGCTAAGTCCTGAAGGCATTTG
1 TA-ATCCGGGCTAAGTCCCGAAGGCATTTG
93909936 GAGCGAGTAT
Statistics
Matches: 162, Mismatches: 12, Indels: 22
0.83 0.06 0.11
Matches are distributed among these distances:
36 12 0.07
37 18 0.11
38 8 0.05
39 61 0.38
40 44 0.27
41 17 0.10
42 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
TAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC
Found at i:93909848 original size:80 final size:76
Alignment explanation
Indices: 93909716--93909946 Score: 256
Period size: 77 Copynumber: 3.0 Consensus size: 76
93909706 CGATGATAAT
* * * * *
93909716 TCGGGCTAAGTCCATAAGTCATT-TGTGCTAGTGACTA-ATCTGGGCTAAGTCCCGAAGGCATTT
1 TCGGGCTAAGTCC-GAAGGCATTGTGTGCGACT-ACTATATCCGGGCTAAGTCCCGAAGGCATTT
93909779 GTGCGAGT-TACTAA
64 GTGCGAGTATA-T-A
*
93909793 TTCCGGGCTAAGTCCGAAGGCATT-TGGTGCGACGTTA-TCTATCCGGGCTAAGTCCCGAAGGCA
1 -T-CGGGCTAAGTCCGAAGGCATTGT-GTGCGAC--TACTATATCCGGGCTAAGTCCCGAAGGCA
*
93909856 TTTGTGCGTGTATATA
61 TTTGTGCGAGTATATA
*
93909872 TCGGGCTAAGTCCGAAGGCATTGTGTGCGACTACTATATCCGGGCTAAGTCCTGAAGGCATTTGG
1 TCGGGCTAAGTCCGAAGGCATTGTGTGCGACTACTATATCCGGGCTAAGTCCCGAAGGCATTT-G
*
93909937 AGCGAGTATA
65 TGCGAGTATA
93909947 GTAACCGGTG
Statistics
Matches: 133, Mismatches: 11, Indels: 19
0.82 0.07 0.12
Matches are distributed among these distances:
75 2 0.02
76 27 0.20
77 37 0.28
78 11 0.08
79 19 0.14
80 34 0.26
81 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (76 bp):
TCGGGCTAAGTCCGAAGGCATTGTGTGCGACTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTATATA
Found at i:93909968 original size:117 final size:117
Alignment explanation
Indices: 93909757--93909970 Score: 278
Period size: 117 Copynumber: 1.8 Consensus size: 117
93909747 TGACTAATCT
* *
93909757 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCGAAGGCATTTGGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTCCGGGCTAAGTCCGAAGGCATTTGGAG
* * *
93909822 CGACGTTATCTATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTGTATATATC
66 CGACGTTATCTAACCGGGATAAATCCCGAAGGCATTTGTGCGTGTATATATC
93909874 GGGCTAAGT-CCGAAGGCATTGTGTGCGA-CTACT-ATATCCGGGCTAAGTCCTGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATT-TGTGCGAGCTACTAAT-TCCGGGCTAAGTCC-GAAGGCATTTG
*
93909936 GAGCGA-G-TATAGTAACCGGTGTATAAAT-CCGAAGG
63 GAGCGACGTTAT-CTAACCGG-G-ATAAATCCCGAAGG
93909971 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 6, Indels: 12
0.83 0.06 0.12
Matches are distributed among these distances:
115 5 0.06
116 36 0.42
117 40 0.47
118 4 0.05
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (117 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTCCGGGCTAAGTCCGAAGGCATTTGGAG
CGACGTTATCTAACCGGGATAAATCCCGAAGGCATTTGTGCGTGTATATATC
Found at i:93917844 original size:27 final size:27
Alignment explanation
Indices: 93917814--93917991 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
93917804 ATATTGAGTC
* * * *
93917814 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
93917841 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
93917868 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
93917896 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
93917923 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
93917950 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
93917977 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93917992 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Done.