Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 28 of 362
Found at i:8179645 original size:69 final size:71
Alignment explanation
Indices: 8179548--8179954 Score: 272
Period size: 72 Copynumber: 5.5 Consensus size: 71
8179538 TTTATGTTTA
* * *
8179548 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-AGACGCTGAGTAATTTCAATTTTTG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGTAATTTCAATTTATG
**
8179612 TTTGTC
66 TTCATC
** *
8179618 AAAAATCAACTC-TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTGGTTTTAATTTAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGTAATTTCAATTTAT
8179682 GTTCATC
65 GTTCATC
* * * ** *
8179689 AAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAGACACGCTGA-GTAATTTCAATT
* *
8179754 CTGGTTTTCAATTTC
62 -T-ATGTTC-A--TC
***** *
8179769 TGTTTTTCAAAAAATCGACTCATTGC--GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 -AAAAATC---AACTC-A-T-ATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGA-GTAATTT
* * *
8179832 CAATTTCTGTT-TTAA
57 CAATTTATGTTCAT-C
* * *
8179847 AAAAATCAAATCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGA-GTA-ATTTCAATTT
* *
8179911 CTGTT-TTC
63 ATGTTCATC
*
8179919 AAAAATCAACTCATATTGCGAGATGTGAGTT-AGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
8179955 TGGGTTCACA
Statistics
Matches: 270, Mismatches: 42, Indels: 48
0.75 0.12 0.13
Matches are distributed among these distances:
69 25 0.09
70 12 0.04
71 39 0.14
72 80 0.30
73 26 0.10
74 14 0.05
75 10 0.04
76 1 0.00
77 7 0.03
78 1 0.00
80 2 0.01
81 4 0.01
82 2 0.01
83 21 0.08
84 4 0.01
85 16 0.06
86 1 0.00
87 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.33
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGTAATTTCAATTTATG
TTCATC
Found at i:8179763 original size:13 final size:14
Alignment explanation
Indices: 8179745--8179778 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8179735 CGCTGAGGTA
8179745 TTTTCAA-TTCTGG
1 TTTTCAATTTCTGG
*
8179758 TTTTCAATTTCTGT
1 TTTTCAATTTCTGG
8179772 TTTTCAA
1 TTTTCAA
8179779 AAAATCGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:8179913 original size:157 final size:155
Alignment explanation
Indices: 8179600--8179920 Score: 382
Period size: 157 Copynumber: 2.0 Consensus size: 155
8179590 CGCTGAGTAA
*
8179600 TTTCAATTTTTGTTTGTCAAAAATCAACTCTATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCTATTGC-AGAGGTGAGTTGAGCCTCAGGACACGCT
** * * * ** *
8179665 GAGTGGTTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGC
65 GAGTAATTTCAATTTATGTTCATAAAAAATCAAATCATATTGCAAGAGGTGAGTTGAGCCTAGG-
*
8179730 TCACACGCTGAGGTATTTTCAATTCTGGT
129 -CACACGCTGAGGTATTTTAAATTCT-GT
* *
8179759 TTTCAATTTCTGTTTTTCAAAAAATCGACTC-ATTGC-GAGGTGAGTTGAGCCTCAGGACACGCT
1 TTTCAATTTCTGTTTGTC-AAAAATCAACTCTATTGCAGAGGTGAGTTGAGCCTCAGGACACGCT
* * *
8179822 GAGGTAATTTCAATTTCTGTT-TTAAAAAAATCAAATCATATTGCGAGA-GTGAGTTGAGCCTCA
65 GA-GTAATTTCAATTTATGTTCAT-AAAAAATCAAATCATATTGCAAGAGGTGAGTTGAGCCT-A
8179885 GG-ACACGCTGAGGTATTTTTAAATTTCTGT
127 GGCACACGCTGAGGTA-TTTTAAA-TTCTGT
8179915 TTTCAA
1 TTTCAA
8179921 AAATCAACTC
Statistics
Matches: 141, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
155 13 0.09
156 14 0.10
157 47 0.33
158 35 0.25
159 21 0.15
160 11 0.08
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (155 bp):
TTTCAATTTCTGTTTGTCAAAAATCAACTCTATTGCAGAGGTGAGTTGAGCCTCAGGACACGCTG
AGTAATTTCAATTTATGTTCATAAAAAATCAAATCATATTGCAAGAGGTGAGTTGAGCCTAGGCA
CACGCTGAGGTATTTTAAATTCTGT
Found at i:8179914 original size:73 final size:71
Alignment explanation
Indices: 8179758--8179954 Score: 276
Period size: 72 Copynumber: 2.8 Consensus size: 71
8179748 TCAATTCTGG
*
8179758 TTTTCAATTTCTGTTTTTCAAAAAATCGACTC--ATTGCGAG-GTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTG-TTTT-AAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGACACG
8179820 CTGAGGTA
64 CTGAGGTA
* *
8179828 ATTTCAATTTCTGTTTTAAAAAAATCAAATCATATTGCGAGAGTGAGTTGAGCCTCAGGACACGC
1 TTTTCAATTTCTGTTTT-AAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGACACGC
8179893 TGAGGTA
65 TGAGGTA
* *
8179900 TTTTTAAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTT-AGCCT
1 -TTTTCAATTTCTGTTTTAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCT
8179955 TGGGTTCACA
Statistics
Matches: 114, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
69 15 0.13
70 12 0.11
71 8 0.07
72 57 0.50
73 22 0.19
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (71 bp):
TTTTCAATTTCTGTTTTAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGACACGCT
GAGGTA
Found at i:8179981 original size:230 final size:223
Alignment explanation
Indices: 8179448--8179981 Score: 640
Period size: 230 Copynumber: 2.4 Consensus size: 223
8179438 GGGTTGAACC
*
8179448 TTTTAATTTACT-TTTTC-AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACAC
1 TTTTAATTT-CTGTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTCACAC
* **
8179509 GCTGAGGTATTTTCAATTTCGTTTTTTTATTTATGTTTAAAAAATCAACTCATATTGCGAGAAGT
64 GCTGAGGTATTTTCAATTTCGGTTTTCAATTTATGTTTAAAAAATCAACTCA-ATTGCGAG-AGT
* * * *
8179574 GAGTTGAGCCTCAAGACGCTGAGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCTATTGCGAG
127 GAGTTGAGCCTCAACACGCTGAGTAATTTCAATTTCTGTTTGTAAAAAATCAAATCTATTGCGAG
*
8179639 AGGTGAGTTGAGCCTCAGGACACGCTGAGTGG
192 AGGTGAGTTGAGCCTCAGGACACGCTGAGTAG
* * * *
8179671 TTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACAC
1 TTTTAATTTCTGTT-TTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACAC
* *
8179736 GCTGAGGTATTTTCAA-TTCTGGTTTTCAATTTCTGTTTTTCAAAAAATCGACTC-ATTGCGAG-
64 GCTGAGGTATTTTCAATTTC-GGTTTTCAATTTATG--TTT-AAAAAATCAACTCAATTGCGAGA
8179798 GTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTT-TAAAAAAATCAAATCATA
125 GTGAGTTGAGCCTCA--ACACGCTGA-GTAATTTCAATTTCTGTTTGT-AAAAAATCAAATC-TA
*
8179862 TTGCGAGA-GTGAGTTGAGCCTCAGGACACGCTGAGGTAT
185 TTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA-GTAG
* *
8179901 TTTTAAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTT-AGCCTTGGGTTCACA
1 TTTT-AATTTCTGTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTT-GG-TCACA
*
8179965 TG-TCGAGGTATTTTCAA
63 CGCT-GAGGTATTTTCAA
8179982 AATCTACTTT
Statistics
Matches: 268, Mismatches: 24, Indels: 31
0.83 0.07 0.10
Matches are distributed among these distances:
222 1 0.00
223 11 0.04
224 4 0.01
225 34 0.13
226 18 0.07
227 31 0.12
228 17 0.06
229 65 0.24
230 78 0.29
231 9 0.03
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (223 bp):
TTTTAATTTCTGTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACACGC
TGAGGTATTTTCAATTTCGGTTTTCAATTTATGTTTAAAAAATCAACTCAATTGCGAGAGTGAGT
TGAGCCTCAACACGCTGAGTAATTTCAATTTCTGTTTGTAAAAAATCAAATCTATTGCGAGAGGT
GAGTTGAGCCTCAGGACACGCTGAGTAG
Found at i:8180689 original size:30 final size:30
Alignment explanation
Indices: 8180653--8180846 Score: 266
Period size: 30 Copynumber: 6.8 Consensus size: 30
8180643 ACTTTTCTCA
8180653 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
8180683 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
8180713 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
8180743 ACTAGCCACT-CTTTT-CACCA-C-A--CC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
8180767 ACTAG-CACT-CTTTTCCACCACCAACT-C
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
8180794 ACTAGCCACT-CTTTTTCA-CACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
8180822 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCCTTTTCCACCACCA
8180847 CTTGTACCTA
Statistics
Matches: 147, Mismatches: 8, Indels: 18
0.85 0.05 0.10
Matches are distributed among these distances:
23 9 0.06
24 12 0.08
25 1 0.01
26 2 0.01
27 15 0.10
28 26 0.18
29 10 0.07
30 72 0.49
ACGTcount: A:0.25, C:0.47, G:0.04, T:0.24
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:8180796 original size:21 final size:22
Alignment explanation
Indices: 8180749--8180796 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
8180739 CTCCACTAGC
*
8180749 CACTCTTTTCACCACACCACTA
1 CACTCTTTTCACCACACAACTA
8180771 GCACTCTTTTCCACCAC-CAACT-
1 -CACTCTTTT-CACCACACAACTA
8180793 CACT
1 CACT
8180797 AGCCACTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 4 0.17
23 13 0.57
24 6 0.26
ACGTcount: A:0.25, C:0.46, G:0.02, T:0.27
Consensus pattern (22 bp):
CACTCTTTTCACCACACAACTA
Found at i:8180846 original size:79 final size:82
Alignment explanation
Indices: 8180694--8180848 Score: 246
Period size: 79 Copynumber: 1.9 Consensus size: 82
8180684 CTAGCCACAC
* *
8180694 CTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACTCTTTTC
1 CTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACTCTTC
8180759 ACCACACCACTAGCACT
66 ACCACACCACTAGCACT
8180776 CTTTTCCACCACCAACT-CACTAGCCACTCTTTTT-CA-CACCAACTCCACTAGCCACAC-CTTC
1 CTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACTCTTC
*
8180837 TCCACCACCACT
66 ACCA-CACCACT
8180849 TGTACCTACA
Statistics
Matches: 69, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
78 6 0.09
79 27 0.39
80 2 0.03
81 17 0.25
82 17 0.25
ACGTcount: A:0.25, C:0.47, G:0.03, T:0.25
Consensus pattern (82 bp):
CTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACTCTTC
ACCACACCACTAGCACT
Found at i:8181524 original size:22 final size:24
Alignment explanation
Indices: 8181347--8181554 Score: 74
Period size: 25 Copynumber: 8.6 Consensus size: 24
8181337 CCTTTTTTGT
* * *
8181347 TATTAT-TATATTTCTTAATATTA
1 TATTATGTATATATCTTAACACTA
* *
8181370 TATTATATATAT-TCTTTA-A-TA
1 TATTATGTATATATCTTAACACTA
*
8181391 TATTAGGTATAT-T-TTAA-ATTCTA
1 TATTATGTATATATCTTAACA--CTA
* * * *
8181414 TATTACGTATATATATATTTATACTA
1 TATTA--TGTATATATCTTAACACTA
* * *
8181440 TTTTATGTATATATCTCTAATATTA
1 TATTATGTATATATCT-TAACACTA
* * *
8181465 TATTATTTATATATATATATTACATGTTA
1 TATTATGTATATATCT-TA--ACA--CTA
*
8181494 TCTTATGTATATATCTT-A-ACTA
1 TATTATGTATATATCTTAACACTA
* *
8181516 TATTATGTATGTATTTTTAACACTA
1 TATTATGTATATA-TCTTAACACTA
*
8181541 TATTATGTACATAT
1 TATTATGTATATAT
8181555 TTTTAATATT
Statistics
Matches: 142, Mismatches: 26, Indels: 33
0.71 0.13 0.16
Matches are distributed among these distances:
20 4 0.03
21 13 0.09
22 14 0.10
23 21 0.15
24 17 0.12
25 42 0.30
26 8 0.06
27 5 0.04
28 2 0.01
29 16 0.11
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (24 bp):
TATTATGTATATATCTTAACACTA
Found at i:8181544 original size:25 final size:25
Alignment explanation
Indices: 8181512--8181560 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
8181502 ATATATCTTA
**
8181512 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
8181537 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
8181561 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:8181565 original size:20 final size:20
Alignment explanation
Indices: 8181540--8181595 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
8181530 TTTTAACACT
8181540 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* * *
8181560 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
8181579 TTATATATGTACATATT
1 ATAT-TATGTACATATT
8181596 GATGTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:8181743 original size:24 final size:24
Alignment explanation
Indices: 8181711--8181770 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
8181701 TAATTATTAT
*
8181711 TATTCTAATATTTTGATATTTT-GA
1 TATTTTAATATTTT-ATATTTTAGA
*
8181735 TATTTTAATATTTTATATTTTATA
1 TATTTTAATATTTTATATTTTAGA
*
8181759 TATTTTATTATT
1 TATTTTAATATT
8181771 CACATCATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 7 0.22
24 25 0.78
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (24 bp):
TATTTTAATATTTTATATTTTAGA
Found at i:8181754 original size:7 final size:8
Alignment explanation
Indices: 8181718--8181759 Score: 61
Period size: 8 Copynumber: 5.5 Consensus size: 8
8181708 TATTATTCTA
8181718 ATATTTTG
1 ATATTTTG
8181726 ATATTTTG
1 ATATTTTG
*
8181734 ATATTTTA
1 ATATTTTG
8181742 ATATTTT-
1 ATATTTTG
8181749 ATATTTT-
1 ATATTTTG
8181756 ATAT
1 ATAT
8181760 ATTTTATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
7 11 0.33
8 22 0.67
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (8 bp):
ATATTTTG
Found at i:8181761 original size:16 final size:16
Alignment explanation
Indices: 8181718--8181766 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
8181708 TATTATTCTA
*
8181718 ATATTTTGATAT-TTTG
1 ATATTTT-ATATATTTT
8181734 ATATTTTA-ATATTTT
1 ATATTTTATATATTTT
8181749 ATATTTTATATATTTT
1 ATATTTTATATATTTT
8181765 AT
1 AT
8181767 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 2 0.07
15 12 0.40
16 16 0.53
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (16 bp):
ATATTTTATATATTTT
Found at i:8187474 original size:67 final size:67
Alignment explanation
Indices: 8187364--8187494 Score: 158
Period size: 67 Copynumber: 2.0 Consensus size: 67
8187354 ATGAGGGGAC
* *
8187364 GATATGAAAGGAAGAAGAATGGCAGCTCATAGTGACTATATAAACGAATGATTAACTGTGTACCA
1 GATATGAAAGGAAGAAGAATGGCAGCTCATACTGACTACATAAACGAATGATTAACTGTGTACCA
8187429 AT
66 AT
** * * * *
8187431 GATATGAAA-GAAGGAAGAATGGTGGCTCATACTGAC-AGCATAAAGGACTGATTGATTGTGTAC
1 GATATGAAAGGAA-GAAGAATGGCAGCTCATACTGACTA-CATAAACGAATGATTAACTGTGTAC
8187494 C
64 C
8187495 CATAGAACGA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
66 4 0.07
67 50 0.93
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (67 bp):
GATATGAAAGGAAGAAGAATGGCAGCTCATACTGACTACATAAACGAATGATTAACTGTGTACCA
AT
Found at i:8188856 original size:13 final size:13
Alignment explanation
Indices: 8188838--8188864 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8188828 ACAAGATTAA
8188838 AAAAAATAATTTT
1 AAAAAATAATTTT
8188851 AAAAAATAATTTT
1 AAAAAATAATTTT
8188864 A
1 A
8188865 TTACCAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
AAAAAATAATTTT
Found at i:8189246 original size:42 final size:42
Alignment explanation
Indices: 8189187--8189272 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
8189177 CAATTATTGG
8189187 TAAGTTTCTTTTTTAGTTATTCAACTATGAAAAGTTGCAAAA
1 TAAGTTTCTTTTTTAGTTATTCAACTATGAAAAGTTGCAAAA
8189229 TAAGTTTCTTTTTTAGTTATTCAACTATGAAAAGTTGCAAAA
1 TAAGTTTCTTTTTTAGTTATTCAACTATGAAAAGTTGCAAAA
8189271 TA
1 TA
8189273 GTAATCTAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (42 bp):
TAAGTTTCTTTTTTAGTTATTCAACTATGAAAAGTTGCAAAA
Found at i:8192408 original size:36 final size:37
Alignment explanation
Indices: 8192314--8192410 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 37
8192304 GTTATACTCT
**
8192314 CTATCTGGTGTGTTTCAGTTGGACTAGCTCTTATGAG
1 CTATCTGGTGTGTTTTGGTTGGACTAGCTCTTATGAG
*
8192351 CTTTTGTCTGGTGTGTTTTGGTTGGACTAGCTCTTATGAG
1 C---TATCTGGTGTGTTTTGGTTGGACTAGCTCTTATGAG
*
8192391 C-ATCTAGTGTGTTTTGGTTG
1 CTATCTGGTGTGTTTTGGTTG
8192411 ATCTGACGAT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
36 17 0.33
37 1 0.02
40 34 0.65
ACGTcount: A:0.12, C:0.13, G:0.29, T:0.45
Consensus pattern (37 bp):
CTATCTGGTGTGTTTTGGTTGGACTAGCTCTTATGAG
Found at i:8199522 original size:40 final size:40
Alignment explanation
Indices: 8199405--8199523 Score: 175
Period size: 40 Copynumber: 3.0 Consensus size: 40
8199395 ATGCTCTCTA
* * *
8199405 TCTGGTGTGTTTCGGTTGGACTAGCTCTTATAAGCTTATG
1 TCTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCATCTG
* *
8199445 TTTGGTGTATTTCGGTTGGACTAGCTCTTATGAGCATCTG
1 TCTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCATCTG
* *
8199485 TCTGGTGTGTTTCGATTAGACTAGCTCTTATGAGCATCT
1 TCTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCATCT
8199524 AGTGTGTTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.16, C:0.16, G:0.26, T:0.42
Consensus pattern (40 bp):
TCTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCATCTG
Found at i:8201636 original size:21 final size:21
Alignment explanation
Indices: 8201605--8201654 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
8201595 CTATCCCAAA
8201605 GCACATA-ATTCATATACATTT
1 GCACATATATTCA-ATACATTT
* *
8201626 -CCCATATATTCAATTCATTT
1 GCACATATATTCAATACATTT
8201646 GCACATATA
1 GCACATATA
8201655 GCATACTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.36, C:0.22, G:0.04, T:0.38
Consensus pattern (21 bp):
GCACATATATTCAATACATTT
Found at i:8201985 original size:46 final size:42
Alignment explanation
Indices: 8201844--8202002 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
8201834 AACTCATACA
* * * *
8201844 ATGCCAATGTCCCAAACGTGGTCTTATATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAATAT-G
8201887 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAATCAAATATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATCAAATATG
* * * *
8201929 ATGCCTACGTCCTAGCCGTGGTCTTACATGTAAATCATATAAGTTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATG-AAATCAAAT-A--TG
*
8201975 ATGCCAACGTCCCAGATGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
8202003 CAATAACACA
Statistics
Matches: 97, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.01
42 25 0.26
43 43 0.44
44 2 0.02
46 26 0.27
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAATATG
Found at i:8206357 original size:16 final size:17
Alignment explanation
Indices: 8206326--8206358 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8206316 TTCATAAGTA
8206326 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
8206343 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
8206359 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:8206704 original size:46 final size:46
Alignment explanation
Indices: 8206644--8206963 Score: 426
Period size: 46 Copynumber: 7.0 Consensus size: 46
8206634 TTTGACATGA
* * * * *
8206644 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * *
8206690 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * *** *
8206736 TGCAATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
8206782 TGCCATGGCATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
8206828 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
8206874 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * *
8206920 TGCCGTGGTATCTTTCAACCATGGTCATACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
8206964 AGAGCACACT
Statistics
Matches: 251, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 247 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:8214637 original size:26 final size:26
Alignment explanation
Indices: 8214599--8214663 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
8214589 TGGCTATCTA
* *
8214599 GAGC-TCCCGATTAAAGGCTC-TTCGT
1 GAGCTTCCTGATTAAAAGCTCGTT-GT
*
8214624 GAGCTTCCTGATTAAAAGTTCGTTGT
1 GAGCTTCCTGATTAAAAGCTCGTTGT
*
8214650 GAACTTCCTGATTA
1 GAGCTTCCTGATTA
8214664 TATCTCTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.12
26 28 0.82
27 2 0.06
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.34
Consensus pattern (26 bp):
GAGCTTCCTGATTAAAAGCTCGTTGT
Found at i:8214743 original size:26 final size:26
Alignment explanation
Indices: 8214712--8214768 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
8214702 CTTCTTGAAA
8214712 GGCTCTTTGTGAGCTTCCCGATTA-AT
1 GGCTCTTTGTGAGCTTCCCG-TTATAT
* *
8214738 GGCTCTTTGTGAGTTTCCTGTTATAT
1 GGCTCTTTGTGAGCTTCCCGTTATAT
8214764 GGCTC
1 GGCTC
8214769 AACAGAAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 3 0.11
26 25 0.89
ACGTcount: A:0.12, C:0.21, G:0.25, T:0.42
Consensus pattern (26 bp):
GGCTCTTTGTGAGCTTCCCGTTATAT
Found at i:8237010 original size:23 final size:25
Alignment explanation
Indices: 8236984--8237040 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 25
8236974 TACCTTGTTT
*
8236984 AAATTTTAAATTTGATT-AATAA-A
1 AAATTTTAAAGTTGATTAAATAATA
* *
8237007 AAATATTAAAGTTGGTTAAATAATA
1 AAATTTTAAAGTTGATTAAATAATA
8237032 ATAATTTTA
1 A-AATTTTA
8237041 TCTATTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 14 0.52
24 5 0.19
25 2 0.07
26 6 0.22
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (25 bp):
AAATTTTAAAGTTGATTAAATAATA
Found at i:8245394 original size:31 final size:31
Alignment explanation
Indices: 8245356--8245418 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
8245346 TACCACCATG
8245356 ATGTTATGTTAATATTATTTGGGTATCAATA
1 ATGTTATGTTAATATTATTTGGGTATCAATA
*
8245387 ATGTTATGTTAATATTATTTTGGTATCAATA
1 ATGTTATGTTAATATTATTTGGGTATCAATA
8245418 A
1 A
8245419 ATATTCAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.49
Consensus pattern (31 bp):
ATGTTATGTTAATATTATTTGGGTATCAATA
Found at i:8245531 original size:23 final size:21
Alignment explanation
Indices: 8245505--8245557 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 21
8245495 ATATAAATTT
8245505 TAAATATTTTAAAATAATTAATA
1 TAAATATTTTAAAAT--TTAATA
*
8245528 TAAATTATTTTTAAAATTTAATT
1 TAAA-TA-TTTTAAAATTTAATA
8245551 TAAATAT
1 TAAATAT
8245558 AAAAATCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 1 0.04
22 2 0.07
23 13 0.48
24 2 0.07
25 9 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TAAATATTTTAAAATTTAATA
Found at i:8246104 original size:23 final size:23
Alignment explanation
Indices: 8246052--8246104 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
8246042 TACATTTCTT
* * *
8246052 TAAA-TATATTTAAATTTATTAA
1 TAAATTATATGTAAACTTAATAA
* *
8246074 TTAGTTATATGTAAACTTAATAA
1 TAAATTATATGTAAACTTAATAA
8246097 TAAATTAT
1 TAAATTAT
8246105 TGTCATACAT
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (23 bp):
TAAATTATATGTAAACTTAATAA
Found at i:8247521 original size:46 final size:46
Alignment explanation
Indices: 8247462--8247585 Score: 151
Period size: 46 Copynumber: 2.7 Consensus size: 46
8247452 ATCGCGAGGT
* * *
8247462 CGATGCATGTCCCAGACATGTCTTACACTAGTTCTCGTCTCAAT-GC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTATCATCT-AATGGC
* * * **
8247508 CGATGCATGTCCCAGACATCTCTTACACTGGCTATCATGTTGTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTAATGGC
*
8247554 TGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
8247586 GCACATATTG
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
45 1 0.02
46 65 0.98
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTAATGGC
Found at i:8248479 original size:25 final size:23
Alignment explanation
Indices: 8248427--8248481 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
8248417 TATAAATAGT
8248427 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
8248450 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
8248475 AATAGTG
1 AATAGTG
8248482 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:8248586 original size:25 final size:25
Alignment explanation
Indices: 8248533--8248748 Score: 108
Period size: 25 Copynumber: 8.7 Consensus size: 25
8248523 TATGTATGAA
*
8248533 ATAGATATAAAAAAATATGTACATAAT
1 ATAG-TAT-AAAAAATATATACATAAT
*
8248560 ATAGTATAAAAAATACATACATAAT
1 ATAGTATAAAAAATATATACATAAT
* *
8248585 ATA--AT-TAAAATATATACATAAG
1 ATAGTATAAAAAATATATACATAAT
* * * * *
8248607 ATAACATGTAAAATATATATATAAAAT
1 AT-A-GTATAAAAAATATATACATAAT
* * *
8248634 ATAGTATTAAAGATATATACATAAA
1 ATAGTATAAAAAATATATACATAAT
** *
8248659 ATAGTATAATATTTATATATACGTAAT
1 ATAGTATAA-A-AAATATATACATAAT
* ** * *
8248686 ATAGAAT-TTAGA-ATATACCTAAT
1 ATAGTATAAAAAATATATACATAAT
8248709 ATA-T-TAAAAGAATATAT--ATAAT
1 ATAGTATAAAA-AATATATACATAAT
*
8248731 ATAATATTAAAAAATATA
1 ATAGTA-TAAAAAATATA
8248749 ATAATAACAA
Statistics
Matches: 142, Mismatches: 34, Indels: 29
0.69 0.17 0.14
Matches are distributed among these distances:
21 1 0.01
22 24 0.17
23 18 0.13
24 11 0.08
25 47 0.33
26 6 0.04
27 35 0.25
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
ATAGTATAAAAAATATATACATAAT
Found at i:8248603 original size:47 final size:48
Alignment explanation
Indices: 8248544--8248667 Score: 124
Period size: 49 Copynumber: 2.5 Consensus size: 48
8248534 TAGATATAAA
* * *
8248544 AAAATATGTACATAATATAGTATAAAAAATACATACATAATATA-ATT
1 AAAATATATACATAAAATAGTATAAAAAATACATACAAAATATAGATT
* * * * * *
8248591 AAAATATATACATAAGATAACATGTAAAATATATATATAAAATATAGTATT
1 AAAATATATACATAAAAT-A-GTATAAAAAATACATACAAAATATAG-ATT
8248642 AAAGATATATACATAAAATAGTATAA
1 AAA-ATATATACATAAAATAGTATAA
8248668 TATTTATATA
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
47 16 0.26
48 1 0.02
49 19 0.31
50 4 0.07
51 7 0.11
52 14 0.23
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (48 bp):
AAAATATATACATAAAATAGTATAAAAAATACATACAAAATATAGATT
Found at i:8249077 original size:16 final size:16
Alignment explanation
Indices: 8249039--8249077 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8249029 CCAAAAAAAA
*
8249039 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
8249055 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
8249071 AATAACT
1 AAAAACT
8249078 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:8249271 original size:30 final size:30
Alignment explanation
Indices: 8249234--8249332 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
8249224 TAGGTACAAG
*
8249234 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
8249264 AGGTGGTGGAGCAAGTGTGGCCAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
8249294 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
8249324 TGGTGGTGG
1 TGGTGGTGG
8249333 CAAAGGCTAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.17, C:0.07, G:0.51, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:8250115 original size:87 final size:88
Alignment explanation
Indices: 8249951--8250556 Score: 511
Period size: 87 Copynumber: 6.8 Consensus size: 88
8249941 TCTTTACTCG
* * ** * * * *
8249951 GCATGTGATCCTGA-GCTTAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAACTAACATT-
1 GCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAC-AAAATTG
*
8250013 AAAAACAGAAATTGAAAATAGCTCA
64 AAAAACAGAAATTGAAAATACCTCA
* * * *
8250038 GCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTT-AAAACAAAATTTGT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAA-TTGA
** *
8250101 AAAACAGATTTTGAAAATACCTCG
65 AAAACAGAAATTGAAAATACCTCA
* * * *
8250125 GTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTG
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACA-AAATTG
* * *
8250189 AAAAAAAAATCAATTGAAAATACCTCG
64 AAAAACAGA--AATTGAAAATACCTCA
* * *
8250216 GCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA-AAACA-AAATT
* *
8250281 GAAAAAAAAAAGAAATTGAAAATATCTCA
63 G---AAAAACAGAAATTGAAAATACCTCA
* *
8250310 GC--GTG-TCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATT
1 GCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-G-AAAACAAAA-T
*
8250372 TGAAAAACAGAATTTGAAAATACCTCA
62 TGAAAAACAGAAATTGAAAATACCTCA
* * * * *
8250399 GCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACA-AAATT
* * *
8250464 GAAGAACAGAAATGGAAAACACCTCA
63 GAAAAACAGAAATTGAAAATACCTCA
* * *
8250490 GC--GT---CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAAGACAGAAA
1 GCATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGAAA-ACA-AAA
8250550 TTGAAAA
61 TTGAAAA
8250557 TACCTCAACG
Statistics
Matches: 437, Mismatches: 56, Indels: 51
0.80 0.10 0.09
Matches are distributed among these distances:
85 3 0.01
86 12 0.03
87 129 0.30
88 24 0.05
89 40 0.09
90 6 0.01
91 126 0.29
92 55 0.13
93 18 0.04
94 16 0.04
96 8 0.02
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (88 bp):
GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAATTGAA
AAACAGAAATTGAAAATACCTCA
Found at i:8250337 original size:92 final size:91
Alignment explanation
Indices: 8250013--8250556 Score: 494
Period size: 91 Copynumber: 6.0 Consensus size: 91
8250003 AACTAACATT
* * * * *
8250013 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAAAAGAAATTGAAAATACCTCAG--CGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGA
8250077 GTTGA--TTTTT-AAAACA-AAATTTG--
64 GTTGATTTTTTTGAAAACAGAAA-TTGAA
* * ** * ** * *
8250100 TAAAACAGATTTTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
8250165 TTGA--TTTTTGCAAAGCATAAATTGAA
65 TTGATTTTTTTG-AAAACAGAAATTGAA
** * *
8250191 AAAAAAATCAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
8250256 TTGATTTTTTTGACAAACATAAATTGAAA
65 TTGATTTTTTTGA-AAACAGAAATTG-AA
* *
8250285 AAAAAAAGAAATTGAAAATATCTCAGCGTGT-CCTGAGGCTGAACTCACCTCTCGCAATATGAGT
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
8250349 TGATTTTTTGGAAAAACA-AAATTTG--
66 TGATTTTTTTG-AAAACAGAAA-TTGAA
* * ** * *
8250374 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAG
*
8250439 CTGATTTTTTTGAAACACAGAAATTG--
65 TTGATTTTTTTGAAA-ACAGAAATTGAA
* * * * * * *
8250465 AAGAACAGAAATGGAAAACACCTCAGC--GT-CTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
8250527 TGATTTTTTTTGAAAGACAGAAATTGAA
66 TGA-TTTTTTTGAAA-ACAGAAATTGAA
8250555 AA
1 AA
8250557 TACCTCAACG
Statistics
Matches: 386, Mismatches: 51, Indels: 37
0.81 0.11 0.08
Matches are distributed among these distances:
85 3 0.01
86 2 0.01
87 86 0.22
88 22 0.06
89 38 0.10
90 9 0.02
91 126 0.33
92 53 0.14
93 18 0.05
94 29 0.08
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (91 bp):
AAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAAACAGAAATTGAA
Found at i:8250391 original size:13 final size:14
Alignment explanation
Indices: 8250359--8250391 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
8250349 TGATTTTTTG
8250359 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
8250373 GAAAAACAGAATTT
1 GAAAAACAAAATTT
8250387 GAAAA
1 GAAAA
8250392 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:8250391 original size:183 final size:172
Alignment explanation
Indices: 8249959--8251425 Score: 906
Period size: 147 Copynumber: 8.8 Consensus size: 172
8249949 CGGCATGTGA
* ** * * * *
8249959 TCCTGA-GCTTAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAACA-TT-AAAAACAG
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAC-AAAATTTGAAAAACAG
* ** * * *
8250021 AAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
64 AAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* ** * *
8250086 T-AAAACAAAATTTGTAAAACAGATTTTGAAAATACCTCGGTATGTG
129 TGAAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAG--CGTG
* * * *
8250132 ACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGCAAAGCATAAA-TTGAAAAAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAA-CA-AAATTTGAAAAACA
* * *
8250196 AATCAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
63 GA--AATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
8250261 TTTTTTGACAAACATAAATTGAAAAAAAAAAGAAATTGAAAATATCTCAGCGTG
125 -TTTTTGA-AAACA-AAATTG---AAAAACAGAAATTGAAAATACCTCAGCGTG
*
8250315 TCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT-G--AAACAAAATTTGAAAAAC
* * *
8250380 AGAATTTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGAT
62 AGAAATTGAAAATACCTCAGCGTGTGA-TCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* * *
8250444 TTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGC--G
125 -TTTTTGAAA-ACA-AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG
* * * *
8250493 TCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT---------TTTGAAAGACAGAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTTGAAAAACAGAA
* * *
8250549 ATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
66 ATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
8250612 ---AC---------AAACAAAAATTGAAATTACCTCAGC--G
131 AAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG
* * *
8250640 TCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGA-TTTT---------TTTGAAAAACAGAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTTGAAAAACAGAA
* * * * *
8250695 ATTGAAAATACCTCAACGTGT-CT-TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT-
66 ATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
8250757 ---------TT-AAAGA-AGAAATTGAAAATACCTCAACGTG
131 AAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG
*
8250788 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AC----------AAACA-AA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTTGAAAAACAGAA
* * * *
8250840 ATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT-
66 ATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
8250902 ---------TTGAAAAACAGAAATTGAAAATACCTCAACGTG
131 AAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG
* * * *
8250935 TCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGAGTTTTG--AC----------AAACAAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTTGAAAAACAGAA
* * * *
8250988 ATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
66 ATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* *
8251051 TAGAAACATAAATT-AAAAAAACGAAAATTGAAAATACCTCAGCGTG
130 GA-AAACA-AAATTGAAAAACA-G-AAATTGAAAATACCTCAGCGTG
*
8251097 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAGCAGAATTTGTAAGGCAAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT-----------TTTG-AA-ACAAAA
** *
8251162 -TTGAAAAACA-AAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATA
52 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATA
*
8251223 TGAGTTGATTTTTGAAAAATAGAAATTAAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTC
117 TGAGTTGA-TTTT------T-G-----AAAA-CA-AAATTGAAAAACAGAAATTGAAAATACCTC
*
8251288 GGCGTG
167 AGCGTG
* * *
8251294 CCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAA-TTGAAAAAAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAA-CA-AAATTTG-AAAAAC
* * * *
8251358 GGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATT
62 AGAAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
8251423 TTT
127 TTT
8251426 TTGAAAGATA
Statistics
Matches: 1092, Mismatches: 104, Indels: 186
0.79 0.08 0.13
Matches are distributed among these distances:
145 59 0.05
146 104 0.10
147 130 0.12
148 93 0.09
149 9 0.01
157 2 0.00
160 6 0.01
161 9 0.01
162 56 0.05
163 32 0.03
165 32 0.03
173 8 0.01
174 33 0.03
175 5 0.00
176 7 0.01
177 5 0.00
178 87 0.08
180 27 0.02
181 1 0.00
182 10 0.01
183 110 0.10
184 12 0.01
185 41 0.04
186 67 0.06
187 11 0.01
188 19 0.02
189 4 0.00
190 38 0.03
192 1 0.00
196 2 0.00
197 57 0.05
198 9 0.01
199 6 0.01
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (172 bp):
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTTGAAAAACAGAA
ATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG
Found at i:8250683 original size:73 final size:75
Alignment explanation
Indices: 8250468--8251069 Score: 777
Period size: 73 Copynumber: 8.2 Consensus size: 75
8250458 GAAATTGAAG
* * * *
8250468 AACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
8250531 TTTTTTTGA-A
65 TTTTTTTGACA
*
8250541 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
8250606 --TTTTTGACA
65 TTTTTTTGACA
* * * *
8250615 AACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
8250678 TTTTTTGAAA
66 TTTTTTGACA
* * *
8250688 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
8250753 TTTTTT-A-A
66 TTTTTTGACA
*
8250761 AGA-AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
8250825 --TTTTTGACA
65 TTTTTTTGACA
* * * * *
8250834 AACA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
8250898 TTTTTTGAAA
66 TTTTTTGACA
* *
8250908 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
8250972 -GTTTTGACA
66 TTTTTTGACA
* * * * * *
8250981 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
8251046 TTTTTT-AGA
66 TTTTTTGACA
* *
8251055 AACATAAATTAAAAA
1 AACAGAAATTGAAAA
8251070 AACGAAAATT
Statistics
Matches: 471, Mismatches: 41, Indels: 33
0.86 0.08 0.06
Matches are distributed among these distances:
71 42 0.09
72 58 0.12
73 182 0.39
74 49 0.10
75 103 0.22
76 37 0.08
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (75 bp):
AACAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGACA
Found at i:8250950 original size:220 final size:222
Alignment explanation
Indices: 8250462--8251136 Score: 950
Period size: 220 Copynumber: 3.0 Consensus size: 222
8250452 AACACAGAAA
* * * *
8250462 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
8250525 GCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
66 GCTGAGTTTTTTT-AAAGA-AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
8250590 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAA
129 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
8250653 CTCACCTATCGCAATATGAGTTGATTTTT
194 CTCACCTATCGCAATATGAGTTGATTTTT
8250682 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
8250747 GCTGA-TTTTTTTAAAGAAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
66 GCTGAGTTTTTTTAAAGAAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
8250811 GCAATATGAGTTGATTTTTGACAAAC-AAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
8250875 CACCTATCGCAATATGAGTTGATTTTT
196 CACCTATCGCAATATGAGTTGATTTTT
* *
8250902 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *** * * * * *
8250967 GTTGAGTTTTGACAAACAA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTC
66 GCTGAGTTTTTTTAAAGAAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* *
8251031 GCAATATGAGTTGATTTTTTTAGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGT
131 GCAATATGAGTTGA--TTTTT-G--AC-----------AAACAAAAATTGAAATTACCTCAGCGT
*
8251096 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
180 GTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTT
8251137 GAAAAGCAGA
Statistics
Matches: 414, Mismatches: 19, Indels: 27
0.90 0.04 0.06
Matches are distributed among these distances:
218 20 0.05
219 73 0.18
220 192 0.46
221 17 0.04
222 44 0.11
223 1 0.00
225 2 0.00
236 4 0.01
237 61 0.15
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (222 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
GCTGAGTTTTTTTAAAGAAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
CACCTATCGCAATATGAGTTGATTTTT
Found at i:8251175 original size:13 final size:13
Alignment explanation
Indices: 8251157--8251181 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8251147 ATTTGTAAGG
8251157 CAAAATTGAAAAA
1 CAAAATTGAAAAA
8251170 CAAAATTGAAAA
1 CAAAATTGAAAA
8251182 TACCTCAGCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (13 bp):
CAAAATTGAAAAA
Found at i:8251272 original size:14 final size:13
Alignment explanation
Indices: 8251237--8251281 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
8251227 TTGATTTTTG
*
8251237 AAAAATAGAAATT
1 AAAAACAGAAATT
*
8251250 AAAAGCAGAAATT
1 AAAAACAGAAATT
8251263 GAAAAACAGAAATT
1 -AAAAACAGAAATT
8251277 AAAAA
1 AAAAA
8251282 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:8251314 original size:100 final size:100
Alignment explanation
Indices: 8251067--8251425 Score: 428
Period size: 100 Copynumber: 3.7 Consensus size: 100
8251057 CATAAATTAA
*
8251067 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
8251131 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAATTG
65 TGATTTTTGAAAAACAGAAATTGAAAAGCAAAATTG
8251165 AAAAACA-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
8251229 GATTTTTGAAAAATAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCA-AAATTG
* * * *
8251264 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
8251329 GATTTTTGAAAAGCATAAATT-----G----A---
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAATTG
* * *
8251352 AAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
8251417 TTGATTTTT
64 TTGATTTTT
8251426 TTGAAAGATA
Statistics
Matches: 234, Mismatches: 20, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
88 24 0.10
90 41 0.18
91 1 0.00
96 1 0.00
97 58 0.25
98 11 0.05
99 27 0.12
100 71 0.30
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (100 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAAAAGCAAAATTG
Found at i:8251418 original size:90 final size:87
Alignment explanation
Indices: 8251250--8251425 Score: 253
Period size: 90 Copynumber: 2.0 Consensus size: 87
8251240 AATAGAAATT
* * *
8251250 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
8251315 TCGCAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * * * *
8251337 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTC-G-GCGTGACCCGAGGCCCAACTCAC
8251402 CTCTCGCAATATGAGTTGATTTTT
63 CTCTCGCAATATGAGTTGATTTTT
8251426 TTGAAAGATA
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
87 13 0.17
88 22 0.28
89 1 0.01
90 42 0.54
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:8263388 original size:23 final size:23
Alignment explanation
Indices: 8263360--8263413 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
8263350 TATAAATAGT
8263360 AATAGTGTTAGAA-ATATACTATA
1 AATAGTGTTAGAACATATAC-ATA
* *
8263383 TATAGTGTTTGAAGCATATACATA
1 AATAGTGTTAGAA-CATATACATA
8263407 AATAGTG
1 AATAGTG
8263414 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 11 0.42
24 9 0.35
25 6 0.23
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.35
Consensus pattern (23 bp):
AATAGTGTTAGAACATATACATA
Found at i:8263531 original size:22 final size:23
Alignment explanation
Indices: 8263473--8263536 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 23
8263463 ATAGATATAA
* *
8263473 AAAATATGTACATAATATAGTGT
1 AAAATATATACATAATATAATGT
* *
8263496 AAAA-ATACATATAATATAAT-T
1 AAAATATATACATAATATAATGT
*
8263517 AAAATATATACATAAGATAA
1 AAAATATATACATAATATAA
8263537 CATGTAGAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
21 5 0.15
22 24 0.73
23 4 0.12
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (23 bp):
AAAATATATACATAATATAATGT
Found at i:8263577 original size:15 final size:14
Alignment explanation
Indices: 8263546--8263606 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 14
8263536 ACATGTAGAA
8263546 AAATATATATATAT
1 AAATATATATATAT
8263560 AAATA-ATATAGTATT
1 AAATATATATA-TA-T
* *
8263575 AAAGATATATACAT
1 AAATATATATATAT
8263589 AAAATAGTATAATATAT
1 -AAATA-TAT-ATATAT
8263606 A
1 A
8263607 TACGTAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
13 5 0.14
14 8 0.22
15 10 0.27
16 9 0.24
17 5 0.14
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (14 bp):
AAATATATATATAT
Found at i:8263582 original size:25 final size:25
Alignment explanation
Indices: 8263554--8263684 Score: 100
Period size: 23 Copynumber: 5.6 Consensus size: 25
8263544 AAAAATATAT
*
8263554 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
8263579 ATATATACATAAAATAGTA-T-AAT
1 ATATATACATAATATAGTATTAAAG
* * *
8263602 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
8263626 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
8263648 AATATATATATAATATAATATTAAA-
1 -ATATATACATAATATAGTATTAAAG
8263673 A-ATATA-ATAATA
1 ATATATACATAATA
8263685 ACAAAAAAAA
Statistics
Matches: 85, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
21 1 0.01
22 8 0.09
23 37 0.44
24 17 0.20
25 18 0.21
26 4 0.05
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:8264179 original size:18 final size:18
Alignment explanation
Indices: 8264156--8264209 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
8264146 ACAAGTGGTG
8264156 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
8264174 GTGGAG-TAG-GT-G---
1 GTGGAGCAAGTGTGGCTA
8264186 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
8264204 GTGGAG
1 GTGGAG
8264210 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 12 0.43
ACGTcount: A:0.20, C:0.07, G:0.50, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:8264188 original size:30 final size:30
Alignment explanation
Indices: 8264152--8264219 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
8264142 AGGTACAAGT
8264152 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
8264182 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
8264212 GGTGGTGG
1 GGTGGTGG
8264220 CAAAGGCTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.16, C:0.06, G:0.53, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:8268083 original size:23 final size:23
Alignment explanation
Indices: 8268056--8268108 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
8268046 ATATAAATTT
8268056 TAAATATTTTAAAAAAATTAATA
1 TAAATATTTTAAAAAAATTAATA
* * *
8268079 TAAATCA-TTTATAAAATTTAATT
1 TAAAT-ATTTTAAAAAAATTAATA
8268102 TAAATAT
1 TAAATAT
8268109 AAAAATCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 1 0.04
23 23 0.92
24 1 0.04
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TAAATATTTTAAAAAAATTAATA
Found at i:8268692 original size:23 final size:23
Alignment explanation
Indices: 8268640--8268692 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
8268630 TATATTTTTT
* * *
8268640 TAAA-TATATTTAAATTTATTAA
1 TAAATTATATGTAAACTTAATAA
* *
8268662 TTAGTTATATGTAAACTTAATAA
1 TAAATTATATGTAAACTTAATAA
8268685 TAAATTAT
1 TAAATTAT
8268693 TGTCATACAT
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (23 bp):
TAAATTATATGTAAACTTAATAA
Found at i:8275021 original size:43 final size:42
Alignment explanation
Indices: 8274885--8275026 Score: 119
Period size: 43 Copynumber: 3.3 Consensus size: 42
8274875 TATGTGTTAT
* * *
8274885 CGTGTAAGACCATGTCTGGGAC-GTTGGCATTGACT-TCTATTTTA
1 CGTGTAAGACCATGTCTGGGACAG-TGGCA-TCATTATCGA--TTA
* * *
8274929 CGTGTAAGACCATGTCTGGGATATTGGCATCATTAATCGATTT
1 CGTGTAAGACCATGTCTGGGACAGTGGCATCATT-ATCGATTA
* *
8274972 CGTGTAAGACCCTGTCTGGGACAGTGGCATCGATGT-TTGATTA
1 CGTGTAAGACCATGTCTGGGACAGTGGCATC-AT-TATCGATTA
*
8275015 CATGTAAGACCA
1 CGTGTAAGACCA
8275027 CATCTACATT
Statistics
Matches: 80, Mismatches: 13, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
43 48 0.60
44 28 0.35
45 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACAGTGGCATCATTATCGATTA
Found at i:8276249 original size:42 final size:42
Alignment explanation
Indices: 8276185--8276273 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
8276175 GGCACACGGA
* * *
8276185 CGTGACTAATGCCATGTGAGGCACATGGCCTATTCACAT-GGG
1 CGTGTCTAATACCATGTGAGGCACACGGCCTATTCAC-TCGGG
* * *
8276227 CGTGTCTAATACCGTGTGAGGCATACGGCCTGTTCACTCGGG
1 CGTGTCTAATACCATGTGAGGCACACGGCCTATTCACTCGGG
8276269 CGTGT
1 CGTGT
8276274 GACACTTGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
41 1 0.03
42 39 0.98
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (42 bp):
CGTGTCTAATACCATGTGAGGCACACGGCCTATTCACTCGGG
Found at i:8282677 original size:19 final size:19
Alignment explanation
Indices: 8282640--8282677 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8282630 CTAGAGTTGA
*
8282640 ATTTTATTTTTTTTCTAAT
1 ATTTTATTTATTTTCTAAT
8282659 ATTTTATGTTATTTT-TAAT
1 ATTTTAT-TTATTTTCTAAT
8282678 GCTTTTGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (19 bp):
ATTTTATTTATTTTCTAAT
Found at i:8286192 original size:14 final size:15
Alignment explanation
Indices: 8286173--8286207 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
8286163 TAGTTATGGG
*
8286173 TATTTTTGTATT-TT
1 TATTTTTGAATTATT
8286187 TATTTTTGAATTATT
1 TATTTTTGAATTATT
8286202 TATTTT
1 TATTTT
8286208 ATAATGTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (15 bp):
TATTTTTGAATTATT
Found at i:8293508 original size:46 final size:46
Alignment explanation
Indices: 8293455--8293547 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
8293445 GAGGGGCACG
8293455 TGTGTCTGTGCCGCATCATGCCCTTCCTTGACTGGTGGCTGCACTA
1 TGTGTCTGTGCCGCATCATGCCCTTCCTTGACTGGTGGCTGCACTA
8293501 TGTGTCTGTGCCGCATCATGCCCTTCCTTGACTGGTGGCTGCACTA
1 TGTGTCTGTGCCGCATCATGCCCTTCCTTGACTGGTGGCTGCACTA
8293547 T
1 T
8293548 CTCAACAACA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.11, C:0.30, G:0.26, T:0.33
Consensus pattern (46 bp):
TGTGTCTGTGCCGCATCATGCCCTTCCTTGACTGGTGGCTGCACTA
Found at i:8294121 original size:73 final size:73
Alignment explanation
Indices: 8294037--8294173 Score: 199
Period size: 73 Copynumber: 1.9 Consensus size: 73
8294027 TGTTTGGTTC
*
8294037 ATTTATGTTTACAAACAAACTTGTTTATTTATCTATTCGT-T-TATAAACTCATTTAATT-AAAA
1 ATTTATATTTACAAACAAACTTGTTTATTTATCTA-TC-TATATATAAACTCATTT-ATTCAAAA
8294099 ATATTCAATTT
63 ATATTCAATTT
* *
8294110 ATTTATATTTACGAATAAACTTGTTTATTTATCTATCTATATATAAACTCATTTATTCAAAAAT
1 ATTTATATTTACAAACAAACTTGTTTATTTATCTATCTATATATAAACTCATTTATTCAAAAAT
8294174 GATATTTTCC
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
71 1 0.02
72 6 0.10
73 51 0.88
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (73 bp):
ATTTATATTTACAAACAAACTTGTTTATTTATCTATCTATATATAAACTCATTTATTCAAAAATA
TTCAATTT
Found at i:8298629 original size:24 final size:25
Alignment explanation
Indices: 8298602--8298649 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8298592 TAATTTTAAG
*
8298602 ATTA-TCTTCTATTAATTTTAAAAT
1 ATTATTCTTCTATTAATTTAAAAAT
* *
8298626 ATTATTTTTTTATTAATTTAAAAA
1 ATTATTCTTCTATTAATTTAAAAA
8298650 ACGGGTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (25 bp):
ATTATTCTTCTATTAATTTAAAAAT
Found at i:8302793 original size:22 final size:22
Alignment explanation
Indices: 8302755--8302813 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
8302745 ATTATCAATT
*
8302755 AATTAGTTTTTAAATTTTAAAA
1 AATTAGTTTTTATATTTTAAAA
8302777 AATTA-TTTTTAT-TATTTAAAA
1 AATTAGTTTTTATAT-TTTAAAA
8302798 AA-TAGTTTTTATATTT
1 AATTAGTTTTTATATTT
8302814 ATTTTGAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
20 3 0.09
21 24 0.73
22 6 0.18
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (22 bp):
AATTAGTTTTTATATTTTAAAA
Found at i:8303819 original size:16 final size:17
Alignment explanation
Indices: 8303775--8303807 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8303765 TTTAGCCTTT
8303775 CATTTAATTTTTTCATA
1 CATTTAATTTTTTCATA
8303792 CATTTAATTTTTTCAT
1 CATTTAATTTTTTCAT
8303808 CTTTTAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.61
Consensus pattern (17 bp):
CATTTAATTTTTTCATA
Found at i:8305487 original size:2 final size:2
Alignment explanation
Indices: 8305480--8305506 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8305470 ATTCTGGCAT
8305480 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
8305507 GATGTAGGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8310055 original size:31 final size:31
Alignment explanation
Indices: 8310020--8310082 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
8310010 TTTTAACATT
*
8310020 TTTAATACAATAATAAATTATATTTAAATAA
1 TTTAATACAATAATAAATGATATTTAAATAA
* *
8310051 TTTAATATAATGATAAATGATATTTAAATAA
1 TTTAATACAATAATAAATGATATTTAAATAA
8310082 T
1 T
8310083 GGGTCAACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (31 bp):
TTTAATACAATAATAAATGATATTTAAATAA
Found at i:8310081 original size:15 final size:15
Alignment explanation
Indices: 8310031--8310081 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
8310021 TTAATACAAT
8310031 AATAAATTATATTTA
1 AATAAATTATATTTA
* *
8310046 AATAATTTA-ATATA
1 AATAAATTATATTTA
*
8310060 ATGATAAATGATATTTA
1 A--ATAAATTATATTTA
8310077 AATAA
1 AATAA
8310082 TGGGTCAACT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
14 5 0.18
15 12 0.43
16 6 0.21
17 5 0.18
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (15 bp):
AATAAATTATATTTA
Found at i:8310978 original size:31 final size:31
Alignment explanation
Indices: 8310943--8311011 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
8310933 ACTAAACATC
*
8310943 TTAATGATTTAAATAAAAACTTTTGAATAGT
1 TTAATGATTTAAATAAAAACTTTCGAATAGT
*
8310974 TTAATGATTTAAATGAAAACTTTCGAATAGT
1 TTAATGATTTAAATAAAAACTTTCGAATAGT
*
8311005 TCAATGA
1 TTAATGA
8311012 CCAATTTGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (31 bp):
TTAATGATTTAAATAAAAACTTTCGAATAGT
Found at i:8315284 original size:62 final size:61
Alignment explanation
Indices: 8315189--8315306 Score: 184
Period size: 62 Copynumber: 1.9 Consensus size: 61
8315179 AGGTTGCTGG
* *
8315189 AATTTATTTTTTTTAAGAGAAAATAAAATATAATTTTAGTTTAACTTT-ATTTGGGGTATT
1 AATTTATTTTTTTTAAGAGAAAACAAAATATAATTTTACTTTAACTTTAATTTGGGGTATT
*
8315249 AATTTATTTATATTTTAAGAGAAAACAAAATATAATTTTACTTTAATTTTAATTTGGG
1 AATTTATTT-T-TTTTAAGAGAAAACAAAATATAATTTTACTTTAACTTTAATTTGGG
8315307 ATTATAACTT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
60 9 0.17
61 1 0.02
62 35 0.67
63 7 0.13
ACGTcount: A:0.39, C:0.03, G:0.10, T:0.48
Consensus pattern (61 bp):
AATTTATTTTTTTTAAGAGAAAACAAAATATAATTTTACTTTAACTTTAATTTGGGGTATT
Found at i:8316736 original size:106 final size:106
Alignment explanation
Indices: 8316551--8316747 Score: 360
Period size: 106 Copynumber: 1.9 Consensus size: 106
8316541 AGTTAGGAAG
8316551 TTAATGAATTTTTATGTGTTGATATAGTTGAACAAAAAGATGAATTAAGGGCTAAATTAATAGAA
1 TTAATGAATTTTTATGTGTTGATATAGTTGAACAAAAAGATGAATTAAGGGCTAAATTAATAGAA
8316616 ATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGA
66 ATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGA
* *
8316657 TTAATGAATTTTTATGTGTTGAT-TAAGTTGAACAAAAAGATGAATTAAGGGCTAAATTGATATA
1 TTAATGAATTTTTATGTGTTGATAT-AGTTGAACAAAAAGATGAATTAAGGGCTAAATTAATAGA
8316721 AATTCAAGTTAGAAATGAAATAAGGAT
65 AATTCAAGTTAGAAATGAAATAAGGAT
8316748 AGAAATGAAA
Statistics
Matches: 88, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
105 1 0.01
106 87 0.99
ACGTcount: A:0.44, C:0.03, G:0.19, T:0.34
Consensus pattern (106 bp):
TTAATGAATTTTTATGTGTTGATATAGTTGAACAAAAAGATGAATTAAGGGCTAAATTAATAGAA
ATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGA
Found at i:8316752 original size:17 final size:17
Alignment explanation
Indices: 8316730--8316764 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8316720 AAATTCAAGT
8316730 TAGAAATGAAATAAGGA
1 TAGAAATGAAATAAGGA
8316747 TAGAAATGAAATAAGGA
1 TAGAAATGAAATAAGGA
8316764 T
1 T
8316765 TGAATTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.23, T:0.20
Consensus pattern (17 bp):
TAGAAATGAAATAAGGA
Found at i:8318560 original size:18 final size:18
Alignment explanation
Indices: 8318310--8318579 Score: 154
Period size: 18 Copynumber: 14.6 Consensus size: 18
8318300 TAACTAATTA
*
8318310 TTACTGAATAATTGACTG
1 TTACTGAATAATTGATTG
* * * *
8318328 TTACCGGATAAGTGACTG
1 TTACTGAATAATTGATTG
* *
8318346 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GATTG
* * *
8318364 TTACTGAATAACTGAATA
1 TTACTGAATAATTGATTG
**
8318382 TTACTGAATAATTGATCA
1 TTACTGAATAATTGATTG
*
8318400 TTACTGAATAACTGATTG
1 TTACTGAATAATTGATTG
** *
8318418 CCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGATTG
*
8318436 TTACTGAATAACTTAATTG
1 TTACTGAATAA-TTGATTG
*
8318455 TTACCGAAT-ATCTGATT-
1 TTACTGAATAAT-TGATTG
*
8318472 TTACTGAATAATTGACTG
1 TTACTGAATAATTGATTG
*
8318490 TTACTGGATAACCTATCAATTGATCG
1 TTACT-G---A---AT-AATTGATTG
* * *
8318516 ATACTGAATAATTGGTTA
1 TTACTGAATAATTGATTG
*
8318534 TTATTGAATAATTGATTG
1 TTACTGAATAATTGATTG
* *
8318552 TTACCGAATAACTGA-TG
1 TTACTGAATAATTGATTG
*
8318569 TTACGGAATAA
1 TTACTGAATAA
8318580 ATAATCGTTT
Statistics
Matches: 196, Mismatches: 40, Indels: 33
0.73 0.15 0.12
Matches are distributed among these distances:
17 29 0.15
18 132 0.67
19 19 0.10
22 2 0.01
25 3 0.02
26 11 0.06
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (18 bp):
TTACTGAATAATTGATTG
Found at i:8318572 original size:17 final size:18
Alignment explanation
Indices: 8318539--8318579 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
8318529 GGTTATTATT
*
8318539 GAATAATTGATTGTTACC
1 GAATAACTGATTGTTACC
*
8318557 GAATAACTGA-TGTTACG
1 GAATAACTGATTGTTACC
8318574 GAATAA
1 GAATAA
8318580 ATAATCGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.32
Consensus pattern (18 bp):
GAATAACTGATTGTTACC
Found at i:8327735 original size:4 final size:4
Alignment explanation
Indices: 8327726--8327750 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8327716 CCTAACATGT
8327726 AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA A
8327751 ATGAATTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:8334900 original size:16 final size:16
Alignment explanation
Indices: 8334879--8334913 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
8334869 TTGTTATAAT
*
8334879 AATATTGGTTATTAAG
1 AATATTGATTATTAAG
8334895 AATATTGATTATTAAG
1 AATATTGATTATTAAG
8334911 AAT
1 AAT
8334914 TTTATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (16 bp):
AATATTGATTATTAAG
Found at i:8334940 original size:18 final size:17
Alignment explanation
Indices: 8334912--8334946 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8334902 ATTATTAAGA
*
8334912 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8334929 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8334947 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8335060 original size:18 final size:17
Alignment explanation
Indices: 8335032--8335066 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8335022 ATTATTAAGA
*
8335032 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8335049 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8335067 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8335091 original size:120 final size:120
Alignment explanation
Indices: 8334887--8335208 Score: 610
Period size: 120 Copynumber: 2.7 Consensus size: 120
8334877 ATAATATTGG
8334887 TTAT-TAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
1 TTATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
8334951 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTTAATAAAT
66 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTTAATAAAT
8335006 TTATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
1 TTATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
*
8335071 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAAT
66 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTTAATAAAT
*
8335126 TGATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
1 TTATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
8335191 TAATAATTATGTTTAAAT
66 TAATAATTATG-TTAAAT
8335209 ATGATTAAAT
Statistics
Matches: 199, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
119 4 0.02
120 189 0.95
121 6 0.03
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.50
Consensus pattern (120 bp):
TTATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTTAATAAAT
Found at i:8335180 original size:18 final size:17
Alignment explanation
Indices: 8335152--8335186 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8335142 ATTATTAAGA
*
8335152 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8335169 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8335187 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8335295 original size:147 final size:151
Alignment explanation
Indices: 8335142--8335441 Score: 527
Period size: 147 Copynumber: 2.0 Consensus size: 151
8335132 AAGAATATTG
*
8335142 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAA
*
8335207 ATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AAT-A-ATT
66 ATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAACATT
*
8335268 TACCAAAACAAATTTCTGCTA
131 TACCAAAACAAATTTATGCTA
8335289 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAA
*
8335354 ATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATCAT
66 ATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA-CAT
8335419 TTACCAAAACAAATTTATGCTA
130 TTACCAAAACAAATTTATGCTA
8335441 A
1 A
8335442 GGGTATTCTG
Statistics
Matches: 144, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
147 89 0.62
148 27 0.19
149 3 0.02
150 1 0.01
152 24 0.17
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.45
Consensus pattern (151 bp):
ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAA
ATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAACATT
TACCAAAACAAATTTATGCTA
Found at i:8335327 original size:18 final size:17
Alignment explanation
Indices: 8335299--8335333 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8335289 ATTATTAAGA
*
8335299 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8335316 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8335334 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8335585 original size:16 final size:16
Alignment explanation
Indices: 8335564--8335599 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
8335554 GATTTGCTAT
8335564 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8335580 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8335596 TACA
1 TACA
8335600 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:8350816 original size:18 final size:18
Alignment explanation
Indices: 8350793--8350831 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
8350783 AAGTCAGTTA
8350793 TTTACATAGTTTAATTTT
1 TTTACATAGTTTAATTTT
8350811 TTTACATAGTTTAATTTT
1 TTTACATAGTTTAATTTT
8350829 TTT
1 TTT
8350832 TTACGTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (18 bp):
TTTACATAGTTTAATTTT
Found at i:8355893 original size:18 final size:19
Alignment explanation
Indices: 8355872--8355907 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8355862 TTTTTCTTTT
8355872 AAAAGTA-TTTTTTAAGCC
1 AAAAGTATTTTTTTAAGCC
8355890 AAAAGTATTTTTTTAAGC
1 AAAAGTATTTTTTTAAGC
8355908 AATACTAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (19 bp):
AAAAGTATTTTTTTAAGCC
Found at i:8356181 original size:6 final size:6
Alignment explanation
Indices: 8356170--8356194 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8356160 AATAATTTAC
8356170 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
8356195 TTAATTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:8368712 original size:13 final size:13
Alignment explanation
Indices: 8368694--8368722 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
8368684 GGTTGTTTAT
8368694 TAAACTAATTAAC
1 TAAACTAATTAAC
8368707 TAAACTAATTAAC
1 TAAACTAATTAAC
8368720 TAA
1 TAA
8368723 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:8381810 original size:7 final size:6
Alignment explanation
Indices: 8381793--8381826 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
8381783 AATAAAATTG
*
8381793 AAATGA AAATAAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAAT-AA AAATAA AAATAA AAATAA AAA
8381827 GATAGGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 21 0.81
7 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:8381815 original size:19 final size:19
Alignment explanation
Indices: 8381773--8381826 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
8381763 TATGTCTTTC
*
8381773 AAAA-GAAAATAATAAAATT
1 AAAATGAAAATAA-AAAATA
*
8381792 GAAATGAAAATAAAAAATA
1 AAAATGAAAATAAAAAATA
*
8381811 AAAATAAAAATAAAAA
1 AAAATGAAAATAAAAA
8381827 GATAGGAGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 22 0.73
20 8 0.27
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (19 bp):
AAAATGAAAATAAAAAATA
Found at i:8384428 original size:22 final size:22
Alignment explanation
Indices: 8384378--8384429 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
8384368 CACCTCTACT
*
8384378 GTACCGAATGGAAAAATACTGA
1 GTACCGTATGGAAAAATACTGA
8384400 GTACCGTATGGAAAAATACTGA
1 GTACCGTATGGAAAAATACTGA
8384422 GTACCGTA
1 GTACCGTA
8384430 AGAGGGATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (22 bp):
GTACCGTATGGAAAAATACTGA
Found at i:8384997 original size:23 final size:23
Alignment explanation
Indices: 8384948--8384997 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
8384938 TAAATATTAT
* *
8384948 TTTATTAATATTTTTATGATATG
1 TTTATTAATATTATTATGATATA
* * *
8384971 TTTATTATTATTATTATTATTTA
1 TTTATTAATATTATTATGATATA
8384994 TTTA
1 TTTA
8384998 GTATAAAAGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (23 bp):
TTTATTAATATTATTATGATATA
Found at i:8387179 original size:46 final size:46
Alignment explanation
Indices: 8387127--8387400 Score: 361
Period size: 46 Copynumber: 6.0 Consensus size: 46
8387117 AGTGTGCTCT
**
8387127 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
**
8387173 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8387219 CTGATATGAAATGAATAAGATCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * * *
8387265 ATGACGGGAGATGAATAAGACCATGGTTGAAAGTTACCATGGCAGC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8387311 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
8387357 ATGATA-GAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCA
1 CTGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCA
8387401 TCATGTCAAA
Statistics
Matches: 203, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 202 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8387707 original size:16 final size:17
Alignment explanation
Indices: 8387686--8387718 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8387676 ATGATGGTGC
8387686 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
8387702 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
8387719 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:8391109 original size:22 final size:23
Alignment explanation
Indices: 8391072--8391117 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
8391062 CAACCAAACC
8391072 AATTCAACATATTTTA-AAGATA
1 AATTCAACATATTTTATAAGATA
8391094 AATTCATACATA-TTTATAAGATA
1 AATTCA-ACATATTTTATAAGATA
8391117 A
1 A
8391118 CGTCATCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (23 bp):
AATTCAACATATTTTATAAGATA
Found at i:8391123 original size:23 final size:24
Alignment explanation
Indices: 8391078--8391129 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
8391068 AACCAATTCA
*
8391078 ACATATTTTAAAGATAAATTCAT-
1 ACATATTTTAAAGATAAAGTCATC
*
8391101 ACATA-TTTATAAGATAACGTCATC
1 ACATATTTTA-AAGATAAAGTCATC
8391125 ACATA
1 ACATA
8391130 CCCAAAACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 4 0.16
23 16 0.64
24 5 0.20
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (24 bp):
ACATATTTTAAAGATAAAGTCATC
Found at i:8393137 original size:93 final size:93
Alignment explanation
Indices: 8393024--8393195 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
8393014 CGCCCATAAG
* *
8393024 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCTATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
8393088 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
8393117 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
8393182 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
8393196 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:8393190 original size:46 final size:46
Alignment explanation
Indices: 8393017--8393192 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
8393007 TGTAACCCGC
* *
8393017 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
8393063 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
8393113 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
8393156 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
8393193 TGCTCAATCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:8403677 original size:21 final size:20
Alignment explanation
Indices: 8403634--8403677 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
8403624 CACAAGTCAT
* * *
8403634 GAACATGGGCGTGGCGTAAC
1 GAACATAGGCGTGGAGAAAC
8403654 GAACATAGGCGTGGGAGAAAC
1 GAACATAGGCGT-GGAGAAAC
8403675 GAA
1 GAA
8403678 TAAATGTGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.34, C:0.16, G:0.39, T:0.11
Consensus pattern (20 bp):
GAACATAGGCGTGGAGAAAC
Found at i:8412903 original size:52 final size:52
Alignment explanation
Indices: 8412836--8413039 Score: 223
Period size: 52 Copynumber: 3.9 Consensus size: 52
8412826 AACATGTGAC
* *
8412836 ATGTGCTCCTATATAAGACCATAGCTAGACTATGGCATCGGTGTGATGAGAT
1 ATGTGCTTCTATATAAGACCATAGCTAGACTATGGCATCAGTGTGATGAGAT
* * *
8412888 ATGTGCTTCTATATAAGACTATAGCTAGACTATGGCATCGGTGTGTTGAGAT
1 ATGTGCTTCTATATAAGACCATAGCTAGACTATGGCATCAGTGTGATGAGAT
* * * * * **
8412940 ATGTGCTTTTGTATAAGACCATAG-TTGCGCTATGGCATCAGTGAGATTTGATT
1 ATGTGCTTCTATATAAGACCATAGCTAG-ACTATGGCATCAGTGTGATGAGA-T
* * * *
8412993 ATGTGCTTCTGTGTAAGACCACATCTAGGA-TATGGCATCAGTGTGAT
1 ATGTGCTTCTATATAAGACCATAGCTA-GACTATGGCATCAGTGTGAT
8413040 TTGTGATCCT
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
51 2 0.02
52 87 0.68
53 37 0.29
54 1 0.01
55 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.33
Consensus pattern (52 bp):
ATGTGCTTCTATATAAGACCATAGCTAGACTATGGCATCAGTGTGATGAGAT
Found at i:8413037 original size:105 final size:104
Alignment explanation
Indices: 8412847--8413037 Score: 233
Period size: 105 Copynumber: 1.8 Consensus size: 104
8412837 TGTGCTCCTA
* * * *
8412847 TATAAGACCATAGCTAGACTATGGCATCGGTGTGATGAGATATGTGCTTCTATATAAGACTATAG
1 TATAAGACCATAGCTAGACTATGGCATCAGTGAGATGAGATATGTGCTTCTATATAAGACCACAG
*
8412912 CTAGACTATGGCATCGGTGTGTTGAGATATGTGCTTTTG
66 CTAGACTATGGCATCAGTGTGTTGAGATATGTGCTTTTG
* * ** * *
8412951 TATAAGACCATAG-TTGCGCTATGGCATCAGTGAGATTTGATTATGTGCTTCTGTGTAAGACCAC
1 TATAAGACCATAGCTAG-ACTATGGCATCAGTGAGATGAGA-TATGTGCTTCTATATAAGACCAC
*
8413015 ATCTAGGA-TATGGCATCAGTGTG
64 AGCTA-GACTATGGCATCAGTGTG
8413038 ATTTGTGATC
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
103 2 0.03
104 31 0.43
105 37 0.51
106 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (104 bp):
TATAAGACCATAGCTAGACTATGGCATCAGTGAGATGAGATATGTGCTTCTATATAAGACCACAG
CTAGACTATGGCATCAGTGTGTTGAGATATGTGCTTTTG
Found at i:8414837 original size:26 final size:26
Alignment explanation
Indices: 8414808--8414915 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
8414798 TGGTACAAAT
8414808 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8414834 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8414860 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8414886 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8414912 TGAT
1 TGAT
8414916 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8417773 original size:17 final size:16
Alignment explanation
Indices: 8417735--8417773 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
8417725 TCTTAACTAC
*
8417735 TTTCTTTCCCTTTTCT
1 TTTCTTTCCCTTTTAT
*
8417751 TCTCTTTCACCTTTTAT
1 TTTCTTTC-CCTTTTAT
8417768 TTTCTT
1 TTTCTT
8417774 GCTTCCAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTCTTTCCCTTTTAT
Found at i:8423129 original size:25 final size:25
Alignment explanation
Indices: 8423095--8423144 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
8423085 TCTTACACTT
8423095 ACAATCATTCTTTTCCCTTTCTAAA
1 ACAATCATTCTTTTCCCTTTCTAAA
8423120 ACAATCATTCTTTTCCCTTTCTAAA
1 ACAATCATTCTTTTCCCTTTCTAAA
8423145 CAAGTTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (25 bp):
ACAATCATTCTTTTCCCTTTCTAAA
Found at i:8423290 original size:7 final size:7
Alignment explanation
Indices: 8423278--8423309 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
8423268 AAATGTGGGA
8423278 AAAATTG
1 AAAATTG
8423285 AAAATTG
1 AAAATTG
8423292 AAAATTG
1 AAAATTG
8423299 AAAATTG
1 AAAATTG
8423306 AAAA
1 AAAA
8423310 CATCTTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (7 bp):
AAAATTG
Found at i:8423699 original size:23 final size:23
Alignment explanation
Indices: 8423672--8423999 Score: 251
Period size: 23 Copynumber: 14.3 Consensus size: 23
8423662 TTCCAGCAAC
*
8423672 TAAACACTTCAATTTGCAGCGA-T
1 TAAACACTTCAATTTACAGC-ATT
* * **
8423695 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
*
8423718 TAAACACTTCAATTTGCAGTACA-T
1 TAAACACTTCAATTTACAG--CATT
* * *
8423742 AAAACACTTCATTTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
8423765 TAAGCACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
* *
8423788 TAAACACTTCAATTTGCAGCACTG
1 TAAACACTTCAATTTACAGCA-TT
* *
8423812 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
*
8423834 TATACAAC-TCAA-TTACAGCGA-T
1 TAAAC-ACTTCAATTTACAGC-ATT
* * **
8423856 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
* * *
8423879 TAAACACTTCAATTTGCAGTAGT
1 TAAACACTTCAATTTACAGCATT
* * *
8423902 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAGCATT
*
8423925 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
8423948 TAAACACTTTAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
**
8423971 TAAACACTTCAATTTGTAGCATT
1 TAAACACTTCAATTTACAGCATT
8423994 TAAACA
1 TAAACA
8424000 ATAGCAGCCA
Statistics
Matches: 245, Mismatches: 43, Indels: 34
0.76 0.13 0.11
Matches are distributed among these distances:
21 1 0.00
22 21 0.09
23 201 0.82
24 20 0.08
25 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.32
Consensus pattern (23 bp):
TAAACACTTCAATTTACAGCATT
Found at i:8426906 original size:7 final size:7
Alignment explanation
Indices: 8426894--8426920 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8426884 ATATGGACTA
8426894 AAATATT
1 AAATATT
8426901 AAATATT
1 AAATATT
8426908 AAATATT
1 AAATATT
8426915 AAATAT
1 AAATAT
8426921 GAACGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8427588 original size:7 final size:7
Alignment explanation
Indices: 8427576--8427602 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8427566 ATATGGACTA
8427576 AAATATT
1 AAATATT
8427583 AAATATT
1 AAATATT
8427590 AAATATT
1 AAATATT
8427597 AAATAT
1 AAATAT
8427603 GAACGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8428269 original size:7 final size:7
Alignment explanation
Indices: 8428257--8428283 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8428247 ATATGGACTA
8428257 AAATATT
1 AAATATT
8428264 AAATATT
1 AAATATT
8428271 AAATATT
1 AAATATT
8428278 AAATAT
1 AAATAT
8428284 GAACGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8428949 original size:7 final size:7
Alignment explanation
Indices: 8428937--8428963 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8428927 ATATGGACTA
8428937 AAATATT
1 AAATATT
8428944 AAATATT
1 AAATATT
8428951 AAATATT
1 AAATATT
8428958 AAATAT
1 AAATAT
8428964 GAACGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8429412 original size:680 final size:681
Alignment explanation
Indices: 8426239--8432354 Score: 11941
Period size: 681 Copynumber: 9.0 Consensus size: 681
8426229 TCATGCCGCT
* *
8426239 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTGAGGGAGATCAACTAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
*
8426304 TGGCACGGAGCCTGATTCACTCGCCCCCTGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8426369 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8426434 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
*
8426499 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATGGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8426564 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
326 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
8426629 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
391 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
* *
8426694 AAAAATTGCGGATTTTGATTTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
456 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
*
8426759 TTTGTGGCGTTTTAATGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
521 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
8426824 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
586 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
8426889 GACTAAAATATTAAATATTAAATATTAAATA
651 GACTAAAATATTAAATATTAAATATTAAATA
8426920 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
8426985 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8427050 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8427115 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8427180 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8427245 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
326 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
8427310 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
391 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
* *
8427375 AAAAATTGGGGATTTTGATTTTTTTTTGCGGCATTTTCATTAAAAATGCCATTATAACTCAATTT
456 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
8427440 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTTATATTTAACATA
521 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAA-TTTTTTTATATTTAACATA
8427505 TTTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATAT
585 TTTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATAT
8427570 GGACTAAAATATTAAATATTAAATATTAAATA
650 GGACTAAAATATTAAATATTAAATATTAAATA
8427602 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
8427667 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8427732 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8427797 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8427862 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8427927 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
326 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
8427992 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
391 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
*
8428057 AAAAATTGGGGATTTTGATTTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
456 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
8428122 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
521 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
8428187 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
586 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
8428252 GACTAAAATATTAAATATTAAATATTAAATA
651 GACTAAAATATTAAATATTAAATATTAAATA
*
8428283 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCTTGAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
*
8428348 TGGCACGGAGCCTGATTCACTCGCCCCCGGACTGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8428413 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8428478 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8428543 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8428608 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
326 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
8428673 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
391 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
*
8428738 AAAAATTGGGGACTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
456 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
*
8428803 TTTATGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
521 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
*
8428868 TTTTTTATTTTTATCTTTTGGAA-TTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
586 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
8428932 GACTAAAATATTAAATATTAAATATTAAATA
651 GACTAAAATATTAAATATTAAATATTAAATA
8428963 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
*
8429028 TGGCACGAAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8429093 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8429158 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8429223 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8429288 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
326 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
*
8429353 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAATGAGCGGGTATTC
391 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
8429418 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
456 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
8429483 TTTGTGGCG--TT----T--AACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
521 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
8429540 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
586 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
8429605 GACTAAAATATTAAATATTAAATATTAAATA
651 GACTAAAATATTAAATATTAAATATTAAATA
8429636 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
8429701 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8429766 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8429831 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8429896 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8429961 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
326 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
*
8430026 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGATATTC
391 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
8430091 AAAAATTGGGGATTTTGATTTT-TTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
456 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
8430155 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTTATATTTAACATA
521 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAA-TTTTTTTATATTTAACATA
8430220 TTTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAA-TTTTTAATTGAAATAT
585 TTTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATAT
8430284 GGACTAAAATATTAAATATTAAATATTAAATA
650 GGACTAAAATATTAAATATTAAATATTAAATA
8430316 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
8430381 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8430446 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8430511 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8430576 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8430641 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
326 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
8430706 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
391 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
*
8430771 AAAAATTGGGGATTTTGATTTT-TTTTGCGGCATTTTCATTAAAAATGCCATTATAACTCAATTT
456 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
8430835 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
521 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
8430900 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
586 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
8430965 GACTAAAATATTAAATATTAAATATTAAATA
651 GACTAAAATATTAAATATTAAATATTAAATA
8430996 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
8431061 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8431126 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8431191 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8431256 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8431321 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
326 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
8431386 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
391 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
8431451 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
456 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
8431516 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
521 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
8431581 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
586 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
8431646 GACTAAAATATTAAATATTAAATATTAAATA
651 GACTAAAATATTAAATATTAAATATTAAATA
8431677 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
8431742 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8431807 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8431872 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8431937 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8432002 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
326 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
8432067 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
391 TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
8432132 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
456 AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
*
8432197 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAATTTTTTTTATATTTAACATAT
521 TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
8432262 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
586 TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
*
8432327 GACTAAAATATTAAATATTAAATTTTAA
651 GACTAAAATATTAAATATTAAATATTAA
8432355 GTTTTTTATT
Statistics
Matches: 5393, Mismatches: 29, Indels: 26
0.99 0.01 0.00
Matches are distributed among these distances:
672 118 0.02
673 546 0.10
674 3 0.00
678 3 0.00
679 67 0.01
680 1755 0.33
681 2221 0.41
682 680 0.13
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (681 bp):
TGAACGAAAGAGGAAGCAATGATAGCAACTCGCCCTGAGGGAGATCAACCAGCAACTAGATTCAC
TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
CAGTGAAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
TGGGGAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
AAAAATTGGGGATTTTGATTTTCTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTT
TTTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATAT
TTTTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATG
GACTAAAATATTAAATATTAAATATTAAATA
Found at i:8429622 original size:7 final size:7
Alignment explanation
Indices: 8429610--8429636 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8429600 ATATGGACTA
8429610 AAATATT
1 AAATATT
8429617 AAATATT
1 AAATATT
8429624 AAATATT
1 AAATATT
8429631 AAATAT
1 AAATAT
8429637 GAACGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8430302 original size:7 final size:7
Alignment explanation
Indices: 8430290--8430316 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8430280 ATATGGACTA
8430290 AAATATT
1 AAATATT
8430297 AAATATT
1 AAATATT
8430304 AAATATT
1 AAATATT
8430311 AAATAT
1 AAATAT
8430317 GAACGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8430982 original size:7 final size:7
Alignment explanation
Indices: 8430970--8430996 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8430960 ATATGGACTA
8430970 AAATATT
1 AAATATT
8430977 AAATATT
1 AAATATT
8430984 AAATATT
1 AAATATT
8430991 AAATAT
1 AAATAT
8430997 GAACGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8431663 original size:7 final size:7
Alignment explanation
Indices: 8431651--8431677 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8431641 ATATGGACTA
8431651 AAATATT
1 AAATATT
8431658 AAATATT
1 AAATATT
8431665 AAATATT
1 AAATATT
8431672 AAATAT
1 AAATAT
8431678 GAACGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8432413 original size:22 final size:22
Alignment explanation
Indices: 8432388--8432459 Score: 119
Period size: 21 Copynumber: 3.3 Consensus size: 22
8432378 TTATTTTTAA
8432388 ATTTTTAAATTTTTAAATTTTT
1 ATTTTTAAATTTTTAAATTTTT
*
8432410 ATTTTTAAA-TTTTAAATTTTA
1 ATTTTTAAATTTTTAAATTTTT
8432431 ATTTTTAAATTTTTAAATTTTT
1 ATTTTTAAATTTTTAAATTTTT
8432453 AATTTTT
1 -ATTTTT
8432460 GAGTTTATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
21 20 0.43
22 20 0.43
23 6 0.13
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
ATTTTTAAATTTTTAAATTTTT
Found at i:8432416 original size:14 final size:14
Alignment explanation
Indices: 8432344--8432459 Score: 105
Period size: 14 Copynumber: 8.1 Consensus size: 14
8432334 ATATTAAATA
*
8432344 TTAAATTTTAAGTTT
1 TTAAATTTTTA-TTT
* *
8432359 TTTATTTTTTATTT
1 TTAAATTTTTATTT
8432373 TT---TTTTTATTT
1 TTAAATTTTTATTT
8432384 TTAAATTTTTAAATTT
1 TTAAATTTTT--ATTT
8432400 TTAAATTTTTATTT
1 TTAAATTTTTATTT
* *
8432414 TTAAATTTTAAATT
1 TTAAATTTTTATTT
8432428 TT-AATTTTTAAATTT
1 TTAAATTTTT--ATTT
8432443 TTAAATTTTTAATTT
1 TTAAATTTTT-ATTT
8432458 TT
1 TT
8432460 GAGTTTATTT
Statistics
Matches: 86, Mismatches: 7, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
11 11 0.13
13 6 0.07
14 28 0.33
15 20 0.23
16 21 0.24
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (14 bp):
TTAAATTTTTATTT
Found at i:8432422 original size:7 final size:7
Alignment explanation
Indices: 8432382--8432458 Score: 91
Period size: 7 Copynumber: 10.6 Consensus size: 7
8432372 TTTTTTTTAT
8432382 TTTTAAA
1 TTTTAAA
8432389 TTTTTAAA
1 -TTTTAAA
8432397 TTTTTAAA
1 -TTTTAAA
* *
8432405 TTTTTAT
1 TTTTAAA
8432412 TTTTAAA
1 TTTTAAA
8432419 TTTTAAA
1 TTTTAAA
*
8432426 TTTTAAT
1 TTTTAAA
8432433 TTTTAAA
1 TTTTAAA
8432440 TTTTTAAA
1 -TTTTAAA
*
8432448 TTTTTAA
1 TTTTAAA
8432455 TTTT
1 TTTT
8432459 TGAGTTTATT
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
7 39 0.64
8 22 0.36
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (7 bp):
TTTTAAA
Found at i:8432459 original size:7 final size:7
Alignment explanation
Indices: 8432344--8432459 Score: 105
Period size: 8 Copynumber: 16.3 Consensus size: 7
8432334 ATATTAAATA
*
8432344 TTAAATT
1 TTAATTT
8432351 TTAAGTTT
1 TTAA-TTT
*
8432359 TTTATTT
1 TTAATTT
*
8432366 TTTATTT
1 TTAATTT
8432373 TT--TTT
1 TTAATTT
8432378 TT-ATTT
1 TTAATTT
8432384 TTAAATTT
1 TT-AATTT
8432392 TTAAATTT
1 TT-AATTT
8432400 TTAAATTT
1 TT-AATTT
8432408 TT-ATTT
1 TTAATTT
*
8432414 TTAAATT
1 TTAATTT
*
8432421 TTAAATT
1 TTAATTT
8432428 TTAATTT
1 TTAATTT
8432435 TTAAATTT
1 TT-AATTT
8432443 TTAAATTT
1 TT-AATTT
8432451 TTAATTT
1 TTAATTT
8432458 TT
1 TT
8432460 GAGTTTATTT
Statistics
Matches: 99, Mismatches: 4, Indels: 12
0.86 0.03 0.10
Matches are distributed among these distances:
5 5 0.05
6 11 0.11
7 41 0.41
8 42 0.42
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (7 bp):
TTAATTT
Found at i:8432466 original size:29 final size:29
Alignment explanation
Indices: 8432380--8432459 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 29
8432370 TTTTTTTTTT
**
8432380 ATTTTTAAATTTTTAAATTTTTAAATTTTT
1 ATTTTTAAATTTTT-AATTTTTAAATTTAA
* *
8432410 ATTTTTAAA-TTTTAAATTTTAATTTTTAA
1 ATTTTTAAATTTTTAATTTTTAA-ATTTAA
8432439 ATTTTTAAATTTTTAATTTTT
1 ATTTTTAAATTTTTAATTTTT
8432460 GAGTTTATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
28 8 0.19
29 16 0.37
30 19 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (29 bp):
ATTTTTAAATTTTTAATTTTTAAATTTAA
Found at i:8432472 original size:29 final size:29
Alignment explanation
Indices: 8432381--8432472 Score: 89
Period size: 29 Copynumber: 3.1 Consensus size: 29
8432371 TTTTTTTTTA
8432381 TTTTTAAATTTTTAAATTTTTAAATTT-TT
1 TTTTTAAATTTTT-AATTTTTAAATTTATT
* * **
8432410 ATTTTTAAA-TTTTAAATTTTAATTTTTAAA
1 -TTTTTAAATTTTTAATTTTTAA-ATTTATT
* *
8432440 TTTTTAAATTTTTAATTTTTGAGTTTATT
1 TTTTTAAATTTTTAATTTTTAAATTTATT
8432469 TTTT
1 TTTT
8432473 ATTTCGGTTT
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
28 8 0.16
29 23 0.46
30 19 0.38
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (29 bp):
TTTTTAAATTTTTAATTTTTAAATTTATT
Found at i:8432473 original size:43 final size:43
Alignment explanation
Indices: 8432377--8432473 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 43
8432367 TTATTTTTTT
* *
8432377 TTTATTTTTAAATTTTTAAATTTTTAAATTTTTATTTTTAAAT
1 TTTATTTTTTAATTTTTAAATTTTTAAATTTTTATTTTTAAAG
** *
8432420 TTTAAATTTTAATTTTTAAATTTTTAAATTTTTAATTTTT-GAG
1 TTTATTTTTTAATTTTTAAATTTTTAAATTTTT-ATTTTTAAAG
8432463 TTTATTTTTTA
1 TTTATTTTTTA
8432474 TTTCGGTTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
43 40 0.87
44 6 0.13
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (43 bp):
TTTATTTTTTAATTTTTAAATTTTTAAATTTTTATTTTTAAAG
Found at i:8433445 original size:41 final size:41
Alignment explanation
Indices: 8433344--8433631 Score: 341
Period size: 41 Copynumber: 7.1 Consensus size: 41
8433334 GTTATATGAC
* * *
8433344 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTACTC-CGA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
* *
8433384 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTTTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
* * * **
8433425 TTTTAGCGGCGTTTTGCCAAAAGCGTCGCTATTGCTCCGAC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
* **
8433466 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGAC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
* *
8433507 TTTTAGCGGCGTTTTACCAAAAGCACCGCTATTGCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
* * * *
8433547 TTTTAGCGGTGTTTTAACAAAAAACGCCGCTATTACTCT-GT
1 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTATTGCTCTGGT
* *
8433588 TTTTAGCGGCGTTTT-CCAAAAACGCTGCTATTGCTCTGTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTG-GT
8433629 TTT
1 TTT
8433632 ACAATTTTTG
Statistics
Matches: 217, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
39 19 0.09
40 49 0.23
41 149 0.69
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
Found at i:8433512 original size:82 final size:82
Alignment explanation
Indices: 8433340--8433623 Score: 378
Period size: 82 Copynumber: 3.5 Consensus size: 82
8433330 AGGGGTTATA
*
8433340 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTACTCCGAC-TTTAGCGGCGTTTTACCAA
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAA
*
8433404 AAGCGCCGCTATTGCTT
66 AAGCGCCGCTATTGCTC
** * *
8433421 TGGTTTTTAGCGGCGTTTTGCCAAAAGCGTCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAA
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAA
8433486 AAGCGCCGCTATTGCTC
66 AAGCGCCGCTATTGCTC
* * * * * *
8433503 CGACTTTTAGCGGCGTTTTACCAAAAGCACCGCTATTGCT-CTATTTTTAGCGGTGTTTTAACAA
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTT-ACCA
* *
8433567 AAAACGCCGCTATTACTC
65 AAAGCGCCGCTATTGCTC
* * *
8433585 TG-TTTTTAGCGGCGTTTT-CCAAAAACGCTGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
8433624 TGTGTTTTAC
Statistics
Matches: 177, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
80 17 0.10
81 71 0.40
82 89 0.50
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (82 bp):
TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAA
AAGCGCCGCTATTGCTC
Done.