Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 281 of 362
Found at i:94802552 original size:43 final size:42
Alignment explanation
Indices: 94802456--94802574 Score: 125
Period size: 44 Copynumber: 2.8 Consensus size: 42
94802446 ACACACATAT
* * * * *
94802456 ATATAAATAATAGTATTAGAAATAGACAATATAATATTAAAA
1 ATATATATAATAGTATAAAAAATATATAATATAATATTAAAA
94802498 ATATACATATAATAGTATAAAAAATATATAACTAATAATATT-AAA
1 ATAT--ATATAATAGTATAAAAAATATATAA-T-ATAATATTAAAA
*
94802543 ATATATATAATAATATATAAAAA-ATATAATAT
1 ATATATATAATAGTATA-AAAAATATATAATAT
94802575 TGAAAACATA
Statistics
Matches: 66, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
41 2 0.03
42 5 0.08
43 18 0.27
44 25 0.38
45 8 0.12
46 8 0.12
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (42 bp):
ATATATATAATAGTATAAAAAATATATAATATAATATTAAAA
Found at i:94802795 original size:17 final size:16
Alignment explanation
Indices: 94802769--94802800 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
94802759 CTATATATAA
94802769 ATATATATACATACAT
1 ATATATATACATACAT
94802785 ATATAATATACATACA
1 ATAT-ATATACATACA
94802801 CTAGTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:94802838 original size:3 final size:3
Alignment explanation
Indices: 94802830--94802965 Score: 59
Period size: 3 Copynumber: 45.3 Consensus size: 3
94802820 TAGAACTAGA
* * * *
94802830 AAT AAT AAT AATT AGT AAT AAT AAT ACGT TAG AA- AAT AATT AAT -AT
1 AAT AAT AAT AA-T AAT AAT AAT AAT A-AT AAT AAT AAT AA-T AAT AAT
** * * * * *
94802876 GTT AAT AAA AAT AAT AGT AAT GAA- AAT AAT ACT AAC AGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* *
94802921 AA- AGAT AAT AAT AGA- AAT AA- AAT AAT AGT AAT AAT ATT AAT AAT
1 AAT A-AT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
94802965 A
1 A
94802966 TGTTAAAAAA
Statistics
Matches: 97, Mismatches: 24, Indels: 24
0.67 0.17 0.17
Matches are distributed among these distances:
2 10 0.10
3 77 0.79
4 10 0.10
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:94805913 original size:15 final size:16
Alignment explanation
Indices: 94805882--94805912 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94805872 AAGCCTAGGG
94805882 GCAAAAATATAATTTT
1 GCAAAAATATAATTTT
*
94805898 GCAAAAATATGATTT
1 GCAAAAATATAATTT
94805913 GTGGATCACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.35
Consensus pattern (16 bp):
GCAAAAATATAATTTT
Found at i:94815314 original size:15 final size:15
Alignment explanation
Indices: 94815294--94815331 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
94815284 CCTTTATATT
94815294 CATCATTTCAACTAC
1 CATCATTTCAACTAC
*
94815309 CATCATTTTAACTAC
1 CATCATTTCAACTAC
94815324 CATCATTT
1 CATCATTT
94815332 AAGTACTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (15 bp):
CATCATTTCAACTAC
Found at i:94815828 original size:23 final size:23
Alignment explanation
Indices: 94815802--94815875 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
94815792 GGGACTTAAT
94815802 AGATAATCATCAACCTTTTTATA
1 AGATAATCATCAACCTTTTTATA
* *
94815825 AGATTAT-A-C-A-CTTTTCGACTTAA
1 AGATAATCATCAACCTTTT-TA--T-A
94815848 TAGATAATCATCAACCTTTTTATA
1 -AGATAATCATCAACCTTTTTATA
94815872 AGAT
1 AGAT
94815876 TATACACTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 18
0.63 0.07 0.30
Matches are distributed among these distances:
19 5 0.13
20 2 0.05
21 1 0.03
22 2 0.05
23 11 0.29
24 7 0.18
25 2 0.05
26 1 0.03
27 2 0.05
28 5 0.13
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (23 bp):
AGATAATCATCAACCTTTTTATA
Found at i:94815863 original size:47 final size:47
Alignment explanation
Indices: 94815794--94815887 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
94815784 AATTTTATGG
94815794 GACTTAATAGATAATCATCAACCTTTTTATAAGATTATACACTTTTC
1 GACTTAATAGATAATCATCAACCTTTTTATAAGATTATACACTTTTC
94815841 GACTTAATAGATAATCATCAACCTTTTTATAAGATTATACACTTTTC
1 GACTTAATAGATAATCATCAACCTTTTTATAAGATTATACACTTTTC
94815888 AATTTACTCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.40
Consensus pattern (47 bp):
GACTTAATAGATAATCATCAACCTTTTTATAAGATTATACACTTTTC
Found at i:94816998 original size:101 final size:101
Alignment explanation
Indices: 94816875--94817073 Score: 317
Period size: 101 Copynumber: 2.0 Consensus size: 101
94816865 CTTACATTCG
* * *
94816875 TAGTGCCATAACCCAGTTATGGTCTTATCGTCAAAATGTCATAGCCCAGCTATGGTCTTACATAT
1 TAGTGCCATAACCCAATTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATAT
*
94816940 AAACACTGCCATAGTCCAACCATAGTCTTACGTCCA
66 AAACACTACCATAGTCCAACCATAGTCTTACGTCCA
* * *
94816976 TAGTGTCATAACTCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTCTTACATAT
1 TAGTGCCATAACCCAATTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATAT
* *
94817041 AAACACTACCATGGTCCAACCATGGTCTTACGT
66 AAACACTACCATAGTCCAACCATAGTCTTACGT
94817074 TTGAATAATT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 89 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (101 bp):
TAGTGCCATAACCCAATTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATAT
AAACACTACCATAGTCCAACCATAGTCTTACGTCCA
Found at i:94817030 original size:33 final size:33
Alignment explanation
Indices: 94816878--94817039 Score: 103
Period size: 33 Copynumber: 4.8 Consensus size: 33
94816868 ACATTCGTAG
* * *
94816878 TGCCATAACCCAGTTATGGTCTTATCGT-CAAAA
1 TGCCATAGCCCAGCTATGGTCTTA-CATACAAAA
* *
94816911 TGTCATAGCCCAGCTATGGTCTTACATATAAACA
1 TGCCATAGCCCAGCTATGGTCTTACATACAAA-A
* * * * * * * *
94816945 CTGCCATAGTCCAACCATAGTCTTACGTCCATAG
1 -TGCCATAGCCCAGCTATGGTCTTACATACAAAA
* * * ** *
94816979 TGTCATAACTCAATTATGGTCTTATCAT-CAGAA
1 TGCCATAGCCCAGCTATGGTCTTA-CATACAAAA
94817012 TGCCATAGCCCAGCTATGGTCTTACATA
1 TGCCATAGCCCAGCTATGGTCTTACATA
94817040 TAAACACTAC
Statistics
Matches: 94, Mismatches: 30, Indels: 10
0.70 0.22 0.07
Matches are distributed among these distances:
32 5 0.05
33 63 0.67
34 3 0.03
35 23 0.24
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (33 bp):
TGCCATAGCCCAGCTATGGTCTTACATACAAAA
Found at i:94818960 original size:110 final size:111
Alignment explanation
Indices: 94818733--94818950 Score: 348
Period size: 110 Copynumber: 2.0 Consensus size: 111
94818723 CCATCCCGAA
* *
94818733 AGCTTTATAACCAATACTTCTCCCTAATAGTCTAAATACCACTGCATTCTCCATACTCTTGTCAA
1 AGCTTTATAACCAATACTTCTCCCTAATAGTCTAAATACCACTACATTCTCCAAACTCTTGTCAA
* * *
94818798 TCAAACTGTGAACTTTATCAAGAAACCTAATCTCGAGATATGGGAC
66 TCAAACTATGAACTCTATCAAGAAACATAATCTCGAGATATGGGAC
*
94818844 AGCTTTATAACCAATACTTCTCCCTAA-AGTCTAAATACTACTACATTCTCCAAACTCTTGTCAA
1 AGCTTTATAACCAATACTTCTCCCTAATAGTCTAAATACCACTACATTCTCCAAACTCTTGTCAA
* * *
94818908 TCAAACTATGAACTCTCTTAGGAAACATAATCTCGAGATATGG
66 TCAAACTATGAACTCTATCAAGAAACATAATCTCGAGATATGG
94818951 TCCCTCTTTA
Statistics
Matches: 98, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
110 71 0.72
111 27 0.28
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (111 bp):
AGCTTTATAACCAATACTTCTCCCTAATAGTCTAAATACCACTACATTCTCCAAACTCTTGTCAA
TCAAACTATGAACTCTATCAAGAAACATAATCTCGAGATATGGGAC
Found at i:94823037 original size:26 final size:27
Alignment explanation
Indices: 94823007--94823059 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
94822997 TATAATATAA
94823007 TTAATA-ATATTTATGTTTTATTATTT
1 TTAATATATATTTATGTTTTATTATTT
* *
94823033 TTAATATATGTTTATTTTTTATTATTT
1 TTAATATATATTTATGTTTTATTATTT
94823060 ATTATTATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (27 bp):
TTAATATATATTTATGTTTTATTATTT
Found at i:94824990 original size:20 final size:20
Alignment explanation
Indices: 94824953--94824991 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
94824943 TAAATATGCA
* *
94824953 TAATAAATAAATACAATTCT
1 TAATAAATAAAAAAAATTCT
*
94824973 TAATGAATAAAAAAAATTC
1 TAATAAATAAAAAAAATTC
94824992 AAAGATTAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.31
Consensus pattern (20 bp):
TAATAAATAAAAAAAATTCT
Found at i:94831224 original size:23 final size:23
Alignment explanation
Indices: 94831198--94831242 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
94831188 AGTTACTACA
94831198 AGAAAAATTTGAGATGGGGATAG
1 AGAAAAATTTGAGATGGGGATAG
94831221 AGAAAAATTTGAGATGGGGATA
1 AGAAAAATTTGAGATGGGGATA
94831243 AAGCGGGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22
Consensus pattern (23 bp):
AGAAAAATTTGAGATGGGGATAG
Found at i:94831812 original size:6 final size:6
Alignment explanation
Indices: 94831801--94831826 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
94831791 GAAAATCAGG
94831801 ATAGAA ATAGAA ATAGAA ATAGAA AT
1 ATAGAA ATAGAA ATAGAA ATAGAA AT
94831827 TCAAGATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.19
Consensus pattern (6 bp):
ATAGAA
Found at i:94835928 original size:2 final size:2
Alignment explanation
Indices: 94835921--94835956 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
94835911 AAAGAAAAAT
94835921 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
94835957 GAGGGCGTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:94837159 original size:36 final size:34
Alignment explanation
Indices: 94837077--94837155 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 34
94837067 GGTTTAGGGT
*
94837077 TTTGTTAAAATAATTTAAGGTTAAGTTTGTAGTA
1 TTTGTTAAAATAATTTAAGGTTAAGTTTGTAGAA
*
94837111 TTTGTTAAAATAATTTAGGGTTCTAAGTTT-TAGGAA
1 TTTGTTAAAATAATTTAAGG-T-TAAGTTTGTA-GAA
94837147 TTT-TTAAAA
1 TTTGTTAAAA
94837156 ATAAATCAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
34 19 0.47
35 9 0.22
36 12 0.30
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.47
Consensus pattern (34 bp):
TTTGTTAAAATAATTTAAGGTTAAGTTTGTAGAA
Found at i:94837439 original size:126 final size:126
Alignment explanation
Indices: 94837308--94837701 Score: 497
Period size: 126 Copynumber: 3.1 Consensus size: 126
94837298 GATTTTGGTT
** * * * *
94837308 TTTTTCTTTAGTAGTTCCTAAAAAAATAATTTTTAGAAGATGGTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTAAACAAATAGTGTCAAAA
* * *
94837373 ACGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAACTCCCACATGGACGCT-C
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACATAGAC-ATAC
* * *
94837434 TTTTTCTACAATAGTTTCTGAAAAAATAATTTTGAGAAGACAGTTCTAAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTAAACAAATAGTGTCAAAA
* * *
94837499 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTGA-TGAAAAAAGCTCCTACGTAGACATAC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATT-ACTGAAAAAAACTCCCACATAGACATAC
* * *
94837560 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTAAATAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTAAACAAATAGTGTCAAAA
* * * * * * ** *
94837625 ATGCTTCAAACAGGATGCAATGTTAGCAAAATTACTGAAAAAAGCTCACATGTGGACACTA-
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACATAGACA-TAC
94837686 TTTTTCTACAGTAGTT
1 TTTTTCTACAGTAGTT
94837702 TATGTTTGGC
Statistics
Matches: 235, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
125 2 0.01
126 230 0.98
127 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTAAACAAATAGTGTCAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACATAGACATAC
Found at i:94840806 original size:18 final size:18
Alignment explanation
Indices: 94840770--94840807 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
94840760 GGAAAAGGAA
* *
94840770 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAAGAT
94840788 ACATATAAGGGCTAAGAT
1 ACATATAAGGGCTAAGAT
94840806 AC
1 AC
94840808 GCACCTGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAAGAT
Found at i:94841683 original size:24 final size:24
Alignment explanation
Indices: 94841656--94841726 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
94841646 ATCATAGAAA
94841656 GTGTACAT-TGGCACTATGTGTGCG
1 GTGTA-ATATGGCACTATGTGTGCG
*
94841680 GTGTAGTATGGCACTATGTGTGCG
1 GTGTAATATGGCACTATGTGTGCG
*
94841704 GAGTTGAATA--GCACTATGTGTGC
1 GTG-T-AATATGGCACTATGTGTGC
94841727 TGATTTGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.02
24 36 0.88
25 1 0.02
26 3 0.07
ACGTcount: A:0.20, C:0.14, G:0.34, T:0.32
Consensus pattern (24 bp):
GTGTAATATGGCACTATGTGTGCG
Found at i:94841747 original size:26 final size:24
Alignment explanation
Indices: 94841666--94841736 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
94841656 GTGTACATTG
* * * *
94841666 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
94841690 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
94841714 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
94841737 GTCAACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:94846295 original size:21 final size:21
Alignment explanation
Indices: 94846266--94846307 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
94846256 ACGAGACAGG
*
94846266 TGACGTGGCCTGTTAACTAGC
1 TGACGTGGCCAGTTAACTAGC
*
94846287 TGACTTGGCCAGTTAACTAGC
1 TGACGTGGCCAGTTAACTAGC
94846308 CACGATTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (21 bp):
TGACGTGGCCAGTTAACTAGC
Found at i:94846891 original size:24 final size:23
Alignment explanation
Indices: 94846844--94846902 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 23
94846834 TACTCTAGAA
94846844 TTTTTCTCTTCTTCTTCTCATCTTC
1 TTTTTCT-TT-TTCTTCTCATCTTC
* *
94846869 TTTTTCTTTTTCTTCCTCTTCTTT
1 TTTTTCTTTTTCTT-CTCATCTTC
94846893 TTTTTCTTTT
1 TTTTTCTTTT
94846903 ACTGCCCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 5 0.16
24 19 0.61
25 7 0.23
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTTTCTTTTTCTTCTCATCTTC
Found at i:94847042 original size:20 final size:20
Alignment explanation
Indices: 94847017--94847054 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
94847007 TTGTTATTTT
94847017 TTGAAAGTTGAATGATTGAA
1 TTGAAAGTTGAATGATTGAA
*
94847037 TTGAAAGTTGAGTGATTG
1 TTGAAAGTTGAATGATTG
94847055 TTTTGTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (20 bp):
TTGAAAGTTGAATGATTGAA
Found at i:94855653 original size:43 final size:44
Alignment explanation
Indices: 94855483--94855654 Score: 144
Period size: 43 Copynumber: 4.0 Consensus size: 44
94855473 ACATAGGATC
* * * *
94855483 CGATATGTG-TTTTCATGTAAGAGCACGTCTGGGACGTTGGCAA
1 CGATATTTGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
* *
94855526 C-A-ACTTATGATTTACGTGTAAGACCACGTCTGGGACGCTGGCAT
1 CGATA-TT-TGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
* * * * *
94855570 TG-CATTTGATTT-CGTGTAAGACC-CTGTTTGGGATAG-TGGCAT
1 CGATATTTGATTTACATGTAAGACCAC-GTCTGGGA-CGTTGGCAT
*
94855612 CGATATTTG-TTTACATGTAAGACCACGTCTGCGACGTTGGCAT
1 CGATATTTGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
94855655 TATACGAGCT
Statistics
Matches: 103, Mismatches: 15, Indels: 22
0.74 0.11 0.16
Matches are distributed among these distances:
41 2 0.02
42 31 0.30
43 37 0.36
44 32 0.31
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (44 bp):
CGATATTTGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:94859730 original size:462 final size:462
Alignment explanation
Indices: 94858862--94859794 Score: 1474
Period size: 462 Copynumber: 2.0 Consensus size: 462
94858852 AATTTCGACT
* * * *
94858862 TATT-CTATGATGTGTTTTCTATTACTAAGAACTTTGTGTGATGAACTGGAATCTATTATTGCAA
1 TATTACTATGATATGTTTTCTATTACCAAGAACTTTGTGTGATGAACTAGAATCTATTATTACAA
* **
94858926 AGTACTGGTGGCAAAAAGGACATGATCAGAAAGGAGTACATTGGTGTAGCTGGAAGAAAACATGT
66 AGTACTGGTGGCAAAAAGGACATGATCAGAAAGGAATACATTGGTGTAGCTAAAAGAAAACATGT
* * * * *
94858991 GAACTAAAACATGTAGGAGGGTTGGGTTTTCAAAATTTCGCAAAGTTTAATGTGGCTTTCCTTGC
131 GAACTAAAACATATAGAAGGGTTGGGTTTTCAAAATTTCACAAAGTTTAATGAGGCTCTCCTTGC
*
94859056 TAAACAGGGCTGGAGGCTAATTGACCAACCAGATTCTTTATTAGCACAAGTATTAAAAGCGAAAT
196 TAAACAGGGCTAGAGGCTAATTGACCAACCAGATTCTTTATTAGCACAAGTATTAAAAGCGAAAT
* * *
94859121 ACTACCCGACTACTAATTTCCTACAAGTAGAGCTCAGACATCATCCATCTTATACGTGGAAAAGT
261 ACTACCCAACTACTAATTTCCTACAAGTAGAACTCAGACATAATCCATCTTATACGTGGAAAAGT
* * * * ** * *
94859186 ATTTGGGCAGCGAAAGGTATTTTGAAAGACGGATTGGGGTGGCTAGTTGGCATAGGCGAAAATAT
326 ATTTGGGCAACGAAAGATATTTTGAAAAACGGACTGGGGTGGAGAGTTGGCACAAGCGAAAATAT
* * *
94859251 TATAATTAACGATGATGCATGGCTACCCGGGGTAGATAATTTTAGAGTTCGTCACTATATCTCTA
391 TATAATTAACGATGATGCATGGCTACCCGAGGCAGATAATTGTAGAGTTCGTCACTATATCTCTA
94859316 ATGATAA
456 ATGATAA
94859323 TATTACTATGATATGTTTTCTATTACCAAGAACTTTGTGTGATGAACTAGAATCTATTATTACAA
1 TATTACTATGATATGTTTTCTATTACCAAGAACTTTGTGTGATGAACTAGAATCTATTATTACAA
*
94859388 AGTACTGGTGGCAAAAAGGACATGGTCAGAAAGGAATACATTGGTGTAGCTAAAAGAAAACATGT
66 AGTACTGGTGGCAAAAAGGACATGATCAGAAAGGAATACATTGGTGTAGCTAAAAGAAAACATGT
* ** *
94859453 GAACTTAAACATATAGAAGGGTTGGGTTTTCGTAATTTTACAAAGTTTAATGAGGCTCTCCTTGC
131 GAACTAAAACATATAGAAGGGTTGGGTTTTCAAAATTTCACAAAGTTTAATGAGGCTCTCCTTGC
* *
94859518 TGAATAGGGCTAGAGGCTAATTGACCAACCAGATTCTTTATTAGCACAAGTATTAAAAGCGAAAT
196 TAAACAGGGCTAGAGGCTAATTGACCAACCAGATTCTTTATTAGCACAAGTATTAAAAGCGAAAT
* * *
94859583 ACTACTCAACTACTAATTTTCTACAAGTAGAACTC-GAACGTAATCCATCTTATACGTGGAAAAG
261 ACTACCCAACTACTAATTTCCTACAAGTAGAACTCAG-ACATAATCCATCTTATACGTGGAAAAG
* *
94859647 TATTTGGGCAACGAAAGATATTTTGAAAAAGGGACTGGGGTGGAGAGTTGGCACAAGTGAAAATA
325 TATTTGGGCAACGAAAGATATTTTGAAAAACGGACTGGGGTGGAGAGTTGGCACAAGCGAAAATA
* *
94859712 TTATAATTAACGATGATGCGTGGCTACCCGAGGCAGATAATTGTAGAGTTCGTCACTGTATCTCT
390 TTATAATTAACGATGATGCATGGCTACCCGAGGCAGATAATTGTAGAGTTCGTCACTATATCTCT
94859777 AATGATAA
455 AATGATAA
94859785 TATTACTATG
1 TATTACTATG
94859795 GTTGCATCAC
Statistics
Matches: 429, Mismatches: 41, Indels: 3
0.91 0.09 0.01
Matches are distributed among these distances:
461 5 0.01
462 424 0.99
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (462 bp):
TATTACTATGATATGTTTTCTATTACCAAGAACTTTGTGTGATGAACTAGAATCTATTATTACAA
AGTACTGGTGGCAAAAAGGACATGATCAGAAAGGAATACATTGGTGTAGCTAAAAGAAAACATGT
GAACTAAAACATATAGAAGGGTTGGGTTTTCAAAATTTCACAAAGTTTAATGAGGCTCTCCTTGC
TAAACAGGGCTAGAGGCTAATTGACCAACCAGATTCTTTATTAGCACAAGTATTAAAAGCGAAAT
ACTACCCAACTACTAATTTCCTACAAGTAGAACTCAGACATAATCCATCTTATACGTGGAAAAGT
ATTTGGGCAACGAAAGATATTTTGAAAAACGGACTGGGGTGGAGAGTTGGCACAAGCGAAAATAT
TATAATTAACGATGATGCATGGCTACCCGAGGCAGATAATTGTAGAGTTCGTCACTATATCTCTA
ATGATAA
Found at i:94865328 original size:46 final size:46
Alignment explanation
Indices: 94865278--94865450 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
94865268 TGGTTGAGCA
94865278 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
94865324 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
94865369 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
94865417 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
94865451 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:94865434 original size:93 final size:93
Alignment explanation
Indices: 94865275--94865445 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
94865265 GGATGGTTGA
* *
94865275 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
94865340 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
94865368 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
94865433 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
94865446 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:94872900 original size:46 final size:46
Alignment explanation
Indices: 94872850--94873022 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
94872840 TGGTTGAGCA
*
94872850 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
94872896 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
94872943 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
94872989 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
94873023 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:94873006 original size:93 final size:93
Alignment explanation
Indices: 94872847--94873017 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
94872837 GGATGGTTGA
* *
94872847 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
94872912 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
94872940 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
94873005 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
94873018 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:94877505 original size:164 final size:164
Alignment explanation
Indices: 94877234--94877565 Score: 567
Period size: 164 Copynumber: 2.0 Consensus size: 164
94877224 TGACTTTTCC
* * *
94877234 AGAAAAGTTTAGCCATTCTTCCTAAAGCGGAAAAGTGATGTGTTTTTCGCGTTTAAGGCTTGGAA
1 AGAAAAGTTTAGCCATTCATCCTAAAGCAGAAAAGTGATGTGTTTTTCGCATTTAAGGCTTGGAA
* *
94877299 AACTATGATCGAGAAGTAGACAAGAAAATAGATAAAACACCTCCACACAG-ACAATGGCTTGGAG
66 AACTATGATCAAGAAGTAGACAAGAAAACAGATAAAACACCTCCACACAGCA-AATGGCTTGGAG
94877363 TTCTGTTCTAGTGAGTTTAATGAAATATGCAAATT
130 TTCTGTTCTAGTGAGTTTAATGAAATATGCAAATT
**
94877398 AGAAAAGTTTAGTTATTCATCCTAAAGCAGAAAAGTGATGTGTTTTTCGCATTTAAGGCTTGGAA
1 AGAAAAGTTTAGCCATTCATCCTAAAGCAGAAAAGTGATGTGTTTTTCGCATTTAAGGCTTGGAA
* *
94877463 AACTATGATCAAGAAGTAGACAAGAAAACATATAAAACACCTCCACATAGCAAATGGCTTGGAGT
66 AACTATGATCAAGAAGTAGACAAGAAAACAGATAAAACACCTCCACACAGCAAATGGCTTGGAGT
94877528 TCTGTTCTAGTGAGTTTAATGAAATATGCAAATT
131 TCTGTTCTAGTGAGTTTAATGAAATATGCAAATT
94877562 AGAA
1 AGAA
94877566 GGGATCATAA
Statistics
Matches: 158, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
164 157 0.99
165 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (164 bp):
AGAAAAGTTTAGCCATTCATCCTAAAGCAGAAAAGTGATGTGTTTTTCGCATTTAAGGCTTGGAA
AACTATGATCAAGAAGTAGACAAGAAAACAGATAAAACACCTCCACACAGCAAATGGCTTGGAGT
TCTGTTCTAGTGAGTTTAATGAAATATGCAAATT
Found at i:94880765 original size:42 final size:41
Alignment explanation
Indices: 94880696--94880853 Score: 165
Period size: 41 Copynumber: 3.8 Consensus size: 41
94880686 CCACCATTGT
* * * * *
94880696 TTTGTAGATAAAATGCCA-TTGGACTGTGGATGCATAACTTA
1 TTTGCAGATAAACTGCCACTAGG-CTGTGGATGCACAACATA
* *
94880737 TTTGCAGATAAAGCTGCCACTGGGCTGTGGGTGCACAACATA
1 TTTGCAGATAAA-CTGCCACTAGGCTGTGGATGCACAACATA
* * * *
94880779 TTTGCAGATAAGCTGTCACTAGGCTGTGGGTGAACAACATA
1 TTTGCAGATAAACTGCCACTAGGCTGTGGATGCACAACATA
* * *
94880820 TTTGCAGATAAATTGCCACTAGGCTCTGAATGCA
1 TTTGCAGATAAACTGCCACTAGGCTGTGGATGCA
94880854 TAGAAAATTT
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
41 64 0.65
42 31 0.32
43 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (41 bp):
TTTGCAGATAAACTGCCACTAGGCTGTGGATGCACAACATA
Found at i:94880840 original size:41 final size:41
Alignment explanation
Indices: 94880735--94880844 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
94880725 ATGCATAACT
* *
94880735 TATTTGCAGATAAAGCTGCCACTGGGCTGTGGGTGCACAACA
1 TATTTGCAGATAAA-CTGCCACTAGGCTGTGGGTGAACAACA
* *
94880777 TATTTGCAGATAAGCTGTCACTAGGCTGTGGGTGAACAACA
1 TATTTGCAGATAAACTGCCACTAGGCTGTGGGTGAACAACA
*
94880818 TATTTGCAGATAAATTGCCACTAGGCT
1 TATTTGCAGATAAACTGCCACTAGGCT
94880845 CTGAATGCAT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
41 48 0.79
42 13 0.21
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (41 bp):
TATTTGCAGATAAACTGCCACTAGGCTGTGGGTGAACAACA
Found at i:94882877 original size:12 final size:13
Alignment explanation
Indices: 94882841--94882878 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
94882831 AAATATTTGA
94882841 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
94882854 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
94882868 CTTG-TCTTAAT
1 CTTGTTCTTAAT
94882879 ATTCCAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:94886422 original size:4 final size:4
Alignment explanation
Indices: 94886395--94886437 Score: 52
Period size: 4 Copynumber: 10.2 Consensus size: 4
94886385 AGAAAATGTT
94886395 TTAA TT-A TTAAA TTGAA TTTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TT-AA TT-AA -TTAA TTAA TTAA TTAA TTAA TTAA T
94886438 ATTTAGGGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
3 3 0.09
4 23 0.66
5 7 0.20
6 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (4 bp):
TTAA
Found at i:94893564 original size:30 final size:30
Alignment explanation
Indices: 94893511--94893576 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
94893501 ATATAAAAAT
94893511 TTAATTCAACCTTCAATTCAATTTAAACAA
1 TTAATTCAACCTTCAATTCAATTTAAACAA
* * * * *
94893541 TTAATTGAATCTTTAATTGAATTTAAATAA
1 TTAATTCAACCTTCAATTCAATTTAAACAA
94893571 TTAATT
1 TTAATT
94893577 AAGACGTCGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.44
Consensus pattern (30 bp):
TTAATTCAACCTTCAATTCAATTTAAACAA
Found at i:94897802 original size:25 final size:25
Alignment explanation
Indices: 94897782--94897877 Score: 104
Period size: 25 Copynumber: 3.8 Consensus size: 25
94897772 GACTTTCTAG
*
94897782 ATAATTCGCCATAAAGGCTTTCCAA
1 ATAATTCGCCACAAAGGCTTTCCAA
*
94897807 ATGATAT-GCCACAAAGGCTTTCCAA
1 ATAAT-TCGCCACAAAGGCTTTCCAA
* * * * *
94897832 AAAATTCACTACAAAGACTTTCCAG
1 ATAATTCGCCACAAAGGCTTTCCAA
*
94897857 ATAATACGCCACAAAGGCTTT
1 ATAATTCGCCACAAAGGCTTT
94897878 TTGAGAGAAT
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
24 1 0.02
25 54 0.96
26 1 0.02
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (25 bp):
ATAATTCGCCACAAAGGCTTTCCAA
Found at i:94904604 original size:21 final size:24
Alignment explanation
Indices: 94904560--94904605 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 24
94904550 GCCCACCCCA
94904560 TTCTACTTAAAGTAGAATACTATT
1 TTCTACTTAAAGTAGAATACTATT
*
94904584 TTCTA-TTAAA-TA-AATATTATT
1 TTCTACTTAAAGTAGAATACTATT
94904605 T
1 T
94904606 GTGTTTTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 2 0.10
23 5 0.24
24 5 0.24
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (24 bp):
TTCTACTTAAAGTAGAATACTATT
Found at i:94909766 original size:57 final size:57
Alignment explanation
Indices: 94909666--94909806 Score: 135
Period size: 57 Copynumber: 2.5 Consensus size: 57
94909656 ATGTGTACAA
* ** * * *
94909666 CAGGATTA-CTAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTA-AGGAGCT-TGAT
1 CAGGATTACCT-GTCCAAGCTAAATCCAATCTATAACATATGCTCGAGAGGA-CTAT-AT
* *
94909723 CTGGATTACCTGTCCAAGCTAAATCCAATCTATAACATGTGCTCGAGAGGACTCATAT
1 CAGGATTACCTGTCCAAGCTAAATCCAATCTATAACATATGCTCGAGAGGACT-ATAT
* *
94909781 CAGGATTACCCGTCCGAGCTAAATCC
1 CAGGATTACCTGTCCAAGCTAAATCC
94909807 TTTTCTATGA
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
57 37 0.54
58 31 0.45
59 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (57 bp):
CAGGATTACCTGTCCAAGCTAAATCCAATCTATAACATATGCTCGAGAGGACTATAT
Found at i:94910527 original size:20 final size:20
Alignment explanation
Indices: 94910502--94910540 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
94910492 TGTATTTATA
*
94910502 AAATTTTATAATTTTTCATC
1 AAATTTTATAACTTTTCATC
94910522 AAATTTTATAACTTTTCAT
1 AAATTTTATAACTTTTCAT
94910541 TTTAGTCCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (20 bp):
AAATTTTATAACTTTTCATC
Found at i:94911307 original size:2 final size:2
Alignment explanation
Indices: 94911302--94911343 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
94911292 TTGTTAACAA
94911302 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
94911344 GCCTATAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:94915999 original size:13 final size:13
Alignment explanation
Indices: 94915981--94916007 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
94915971 AATTTATTTT
94915981 ATATATATATAAA
1 ATATATATATAAA
94915994 ATATATATATAAA
1 ATATATATATAAA
94916007 A
1 A
94916008 GACTTGTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATATATATATAAA
Found at i:94917782 original size:19 final size:19
Alignment explanation
Indices: 94917754--94917805 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
94917744 CACATGGGTG
* *
94917754 AAAA-ATAATAAATTATTA
1 AAAATATAATAAATAAATA
*
94917772 AAAATATAATAAATAAATC
1 AAAATATAATAAATAAATA
*
94917791 AAAATAAAATAAATA
1 AAAATATAATAAATA
94917806 TTGATTCCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 4 0.14
19 25 0.86
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (19 bp):
AAAATATAATAAATAAATA
Found at i:94919984 original size:13 final size:13
Alignment explanation
Indices: 94919966--94919991 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
94919956 TCATCTTTTA
94919966 GAAATAGTGCATT
1 GAAATAGTGCATT
94919979 GAAATAGTGCATT
1 GAAATAGTGCATT
94919992 TAATTTTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
GAAATAGTGCATT
Found at i:94927507 original size:23 final size:23
Alignment explanation
Indices: 94927426--94927511 Score: 90
Period size: 21 Copynumber: 3.9 Consensus size: 23
94927416 CTGATCAGAG
*
94927426 TACGACACATAAAGTGCCT-AAA
1 TACGACACACAAAGTGCCTGAAA
* *
94927448 -ACGACACACGAGGTGCCTG--A
1 TACGACACACAAAGTGCCTGAAA
* *
94927468 TACGACACACGAGGTGCCTGAAA
1 TACGACACACAAAGTGCCTGAAA
*
94927491 TACGACACATAAAGTGCCTGA
1 TACGACACACAAAGTGCCTGA
94927512 TCGATAAATC
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.63
23 19 0.35
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (23 bp):
TACGACACACAAAGTGCCTGAAA
Found at i:94927907 original size:15 final size:15
Alignment explanation
Indices: 94927882--94927939 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
94927872 TCATATATAT
94927882 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
94927898 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
94927913 AATAATTTCAATCAA
1 TATAAATTCAATCAA
94927928 TATAAATTCAAT
1 TATAAATTCAAT
94927940 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:94929182 original size:20 final size:21
Alignment explanation
Indices: 94929143--94929186 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
94929133 TCCCCTGCTC
*
94929143 TCTATTTCGTTTCATTTTGTT
1 TCTATTTCCTTTCATTTTGTT
94929164 TCTATTTCCTTTC-TTTTGTT
1 TCTATTTCCTTTCATTTTGTT
94929184 TCT
1 TCT
94929187 TTAGTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.07, C:0.18, G:0.07, T:0.68
Consensus pattern (21 bp):
TCTATTTCCTTTCATTTTGTT
Found at i:94929202 original size:5 final size:5
Alignment explanation
Indices: 94929194--94929235 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
94929184 TCTTTAGTTT
94929194 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
94929236 TAAAACATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:94930943 original size:2 final size:2
Alignment explanation
Indices: 94930936--94930961 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
94930926 ATACAAGAAA
94930936 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
94930962 GATGTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94931102 original size:27 final size:27
Alignment explanation
Indices: 94931067--94931127 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 27
94931057 AGAAGTATAT
* *
94931067 ACGTAGTATTAAAATATATATATATACAAA
1 ACGTA-TATGAAAAGATATA-ATAT-CAAA
*
94931097 ACGTATATGAAAAGATATAATATTAAA
1 ACGTATATGAAAAGATATAATATCAAA
94931124 ACGT
1 ACGT
94931128 GTATACTTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 7 0.25
28 4 0.14
29 12 0.43
30 5 0.18
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (27 bp):
ACGTATATGAAAAGATATAATATCAAA
Found at i:94931305 original size:17 final size:18
Alignment explanation
Indices: 94931269--94931305 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
94931259 ATAATAGTAA
94931269 TAATAAAATGCTAATAAG
1 TAATAAAATGCTAATAAG
94931287 TAAT-AAATG-TAATATAG
1 TAATAAAATGCTAATA-AG
94931304 TA
1 TA
94931306 CTAGAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 9 0.50
18 4 0.22
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.32
Consensus pattern (18 bp):
TAATAAAATGCTAATAAG
Found at i:94931597 original size:3 final size:3
Alignment explanation
Indices: 94931591--94931841 Score: 104
Period size: 3 Copynumber: 83.7 Consensus size: 3
94931581 TTGCATTAAC
* * * * * *
94931591 AAT AAT AAT AGT AAG AAT AAT AAC GAT AAT -AT AAC AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
94931638 AAA AAT AAT AAC AAT AAT AGA- AAT AAT AAA AAT AAA AAT AAA AAGGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AA--T
* * * * * * * *
94931685 AACG AA- AAT AAT ACT GAC ACT GAC AAT AAT ACT AAT AAT AAT AAT
1 AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
94931730 -AT ATT AAT AAT AAT AAT AAT AAT AAT AGT AGT AGT AGA- AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * **
94931774 AAT CAT -AT AAGT AAT AAT AAT ACA- CAT AGG AAT AAT AAT AAT AAT
1 AAT AAT AAT AA-T AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* *
94931819 AGT AAT AAT -TT GAAT AAT AAT AA
1 AAT AAT AAT AAT -AAT AAT AAT AA
94931842 AAAAAGCAAA
Statistics
Matches: 178, Mismatches: 55, Indels: 30
0.68 0.21 0.11
Matches are distributed among these distances:
2 12 0.07
3 156 0.88
4 8 0.04
5 2 0.01
ACGTcount: A:0.60, C:0.05, G:0.08, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:94931632 original size:35 final size:35
Alignment explanation
Indices: 94931587--94931678 Score: 116
Period size: 35 Copynumber: 2.7 Consensus size: 35
94931577 ATAGTTGCAT
* * *
94931587 TAACAATAATAATAGTAAGAATAATAACGATAATA
1 TAACAATAATAATAATAAAAATAATAACAATAATA
*
94931622 TAACAATAATAGTAATAAAAATAATAACAATAATA
1 TAACAATAATAATAATAAAAATAATAACAATAATA
* *
94931657 -GA-AATAATAAAAATAAAAATAA
1 TAACAATAATAATAATAAAAATAA
94931679 AAAGGTAACG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
33 18 0.36
34 1 0.02
35 31 0.62
ACGTcount: A:0.66, C:0.04, G:0.05, T:0.24
Consensus pattern (35 bp):
TAACAATAATAATAATAAAAATAATAACAATAATA
Found at i:94933228 original size:42 final size:42
Alignment explanation
Indices: 94933117--94933244 Score: 204
Period size: 42 Copynumber: 3.1 Consensus size: 42
94933107 AGACACGTGA
* *
94933117 CTTCAATCAATTCCACTGAAACTTCAAGGAGATCTGTTGTAG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
* *
94933159 CTTCGCTTAA-TCCACTGAAACTTCAAGGAGATCTGCTGTAG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
*
94933200 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
94933242 CTT
1 CTT
94933245 TTAGCTGCTC
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 38 0.49
42 40 0.51
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (42 bp):
CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
Found at i:94933394 original size:42 final size:44
Alignment explanation
Indices: 94933287--94933406 Score: 129
Period size: 42 Copynumber: 2.8 Consensus size: 44
94933277 TATTTGATTT
* * *
94933287 TCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCA
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAACA
** * * * *
94933331 TTGATCTGTTTCCCTTCTGCTTAGGGGTTT-A-GATCTGTAAAC-
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCT-TGTAAACA
94933373 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
94933407 TTTGAAAATT
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
42 27 0.46
43 7 0.12
44 25 0.42
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.36
Consensus pattern (44 bp):
TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAACA
Found at i:94933959 original size:43 final size:44
Alignment explanation
Indices: 94933890--94933976 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 44
94933880 GGGAGACAAA
* * *
94933890 ATCTGTAATTTTTAGCCTATTACCCTACTGTTTAAGGGGTTAAG
1 ATCTGTAATATTTAACCTATTACCCTACTGCTTAAGGGGTTAAG
* * *
94933934 ATCTGTAA-ATTTAACCTGTTACCCTACTGCTTATGGGTTTAAG
1 ATCTGTAATATTTAACCTATTACCCTACTGCTTAAGGGGTTAAG
94933977 GCTTGGTGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 29 0.78
44 8 0.22
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.40
Consensus pattern (44 bp):
ATCTGTAATATTTAACCTATTACCCTACTGCTTAAGGGGTTAAG
Found at i:94946289 original size:17 final size:18
Alignment explanation
Indices: 94946253--94946289 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
94946243 ATAATAGTAA
94946253 TAATAAAATGCTAATAAG
1 TAATAAAATGCTAATAAG
94946271 TAAT-AAATG-TAATATAG
1 TAATAAAATGCTAATA-AG
94946288 TA
1 TA
94946290 CTAGAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 9 0.50
18 4 0.22
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.32
Consensus pattern (18 bp):
TAATAAAATGCTAATAAG
Found at i:94946580 original size:3 final size:3
Alignment explanation
Indices: 94946574--94946821 Score: 95
Period size: 3 Copynumber: 83.7 Consensus size: 3
94946564 TTGCATTAAC
* * * * * *
94946574 AAT AAT AAT AGT AAG AAT AAT AAC GAT AAT -AT AAC AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
94946621 AA- AA- AAT AAT AAC AAT AAT AGA- AAT AAT AAA AAT AAA AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
94946663 AAGGT AACG AA- AAT AAT ACT GAC ACT GAC AAT AAT ACT AAT AAT AAT
1 AA--T AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
94946710 -AT ATT AAT AAT AAT AAT AAT AAT AAT AGT AGT AGT AGA- AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * **
94946754 AAT CAT -AT AAGT AAT AAT AAT ACA- CAT AGG AAT AAT AAT AAT AAT
1 AAT AAT AAT AA-T AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* *
94946799 AGT AAT AAT -TT GAAT AAT AAT AA
1 AAT AAT AAT AAT -AAT AAT AAT AA
94946822 AAAAAGCAAA
Statistics
Matches: 177, Mismatches: 51, Indels: 34
0.68 0.19 0.13
Matches are distributed among these distances:
2 18 0.10
3 149 0.84
4 8 0.05
5 2 0.01
ACGTcount: A:0.60, C:0.05, G:0.08, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:94948258 original size:6 final size:6
Alignment explanation
Indices: 94948247--94948360 Score: 126
Period size: 6 Copynumber: 18.8 Consensus size: 6
94948237 AACCAAAATG
*
94948247 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* * * *
94948295 AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
94948344 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
94948361 GTGAATGCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
5 5 0.05
6 80 0.88
7 5 0.05
8 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:94948506 original size:26 final size:26
Alignment explanation
Indices: 94948477--94948542 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
94948467 CAGCATGGCT
*
94948477 GCCAGAACAGATATCGTGACAGAGTC
1 GCCAGAACAGATATCGTGACAGAGCC
* * *
94948503 GCCAGATACAAATATTGTGGCAGAGCC
1 GCCAGA-ACAGATATCGTGACAGAGCC
* *
94948530 ACCAGAATAGATA
1 GCCAGAACAGATA
94948543 ATGTGGCAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
26 11 0.34
27 21 0.66
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (26 bp):
GCCAGAACAGATATCGTGACAGAGCC
Found at i:94948940 original size:27 final size:26
Alignment explanation
Indices: 94948861--94948943 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
94948851 TTGATCGGTC
* * *
94948861 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
94948887 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
94948914 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
94948941 AAC
1 AAC
94948944 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:94949337 original size:27 final size:27
Alignment explanation
Indices: 94949142--94949337 Score: 221
Period size: 27 Copynumber: 7.3 Consensus size: 27
94949132 GGGGCAAAAT
* * * *
94949142 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
94949169 GGCAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
94949196 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
94949223 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
94949250 GGTAATTCTATCCTATAAGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
94949277 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
94949304 GAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
94949331 AGTAATT
1 GGTAATT
94949338 TCACAATCAA
Statistics
Matches: 140, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:94949822 original size:27 final size:27
Alignment explanation
Indices: 94949349--94949805 Score: 537
Period size: 27 Copynumber: 16.9 Consensus size: 27
94949339 CACAATCAAA
*
94949349 GGTAAAACGATAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* * *
94949376 GGTAAACCAGTAATTCTGTAAATCAAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * **
94949403 GGTAAAATGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
94949430 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * **
94949457 GGTAAAACAGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
94949484 GGTAAAATGGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
94949511 GGT-AAACTAGTAATTCTGTAAA-CTGAG
1 GGTAAAAC-GGTAATTCTGTAAATC-GAG
*
94949538 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
94949565 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * *
94949592 GGTAAAACGATAATTTTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
**
94949619 GGTAAAATAGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
94949646 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * *
94949673 GGTAAAACGGTGATTCTATAAA-CTGAA
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
94949700 GGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * * **
94949727 GGTAAAATGATAATTTTAAAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
94949754 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
94949781 GGTAAAACGGTAATTCTGTAAATCG
1 GGTAAAACGGTAATTCTGTAAATCG
94949806 GGAGTACTTT
Statistics
Matches: 366, Mismatches: 55, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.02
27 352 0.96
28 8 0.02
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:94949849 original size:81 final size:81
Alignment explanation
Indices: 94949332--94949836 Score: 592
Period size: 81 Copynumber: 6.2 Consensus size: 81
94949322 GGGTATTTCA
* * * * *
94949332 GTAATTTCAC-AATCAAAGGTAAAACGATAATTCTGTAAACTGAGGGTAAACCAGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGTA
*
94949396 AATCAAGGGTAAAATG
66 AATCGAGGGTAAAATG
* **
94949412 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAA-TCGAGGGTAAAACAGTAATTTTAC
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAACT-GAGGGTAAAACAGTAATTCTGT
94949476 AAATCGAGGGTAAAATG
65 AAATCGAGGGTAAAATG
* * * * *
94949493 GTAATTCTATAAATCGAGGGT-AAACTAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTAT
1 GTAATTTTACAAATCGAGGGTAAAAC-GGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGT
*
94949557 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAATG
* * * *
94949574 GTAATTTTACAAATCGAGGGTAAAACGATAATTTTATAAA-TCGAGGGTAAAATAGTAATTCTGT
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAACT-GAGGGTAAAACAGTAATTCTGT
*
94949638 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAATG
* ** * * * **
94949655 GTAATTCTGTAAATCGAGGGTAAAACGGTGATTCTATAAACTGAAGGTAAAATGGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGTA
94949720 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * *
94949736 ATAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAA-TCGAGGGTAAAACGGTAATTCTGT
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAACT-GAGGGTAAAACAGTAATTCTGT
***
94949800 AAATCG-GGAGTACTTTG
65 AAATCGAGG-GTAAAATG
*
94949817 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAAATCGAGGG
94949837 CATTTCAGTA
Statistics
Matches: 366, Mismatches: 48, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
80 19 0.05
81 340 0.93
82 7 0.02
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAATG
Found at i:94955086 original size:23 final size:23
Alignment explanation
Indices: 94955028--94955088 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 23
94955018 GACACATATA
*
94955028 GTGCCT-AAA-ACGACATACGAG
1 GTGCCTGAAATACGACACACGAG
94955049 GTGCCTG--ATACGACACACGAG
1 GTGCCTGAAATACGACACACGAG
94955070 GTGCCTGAAATACGACACA
1 GTGCCTGAAATACGACACA
94955089 TAAAGTGCCT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
20 1 0.03
21 24 0.69
23 10 0.29
ACGTcount: A:0.34, C:0.26, G:0.25, T:0.15
Consensus pattern (23 bp):
GTGCCTGAAATACGACACACGAG
Found at i:94955096 original size:23 final size:23
Alignment explanation
Indices: 94955015--94955100 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 23
94955005 CTGATCAGAG
* *
94955015 TACGACACATATAGTGCCT-AAA
1 TACGACACACAAAGTGCCTGAAA
* * *
94955037 -ACGACATACGAGGTGCCTG--A
1 TACGACACACAAAGTGCCTGAAA
* *
94955057 TACGACACACGAGGTGCCTGAAA
1 TACGACACACAAAGTGCCTGAAA
*
94955080 TACGACACATAAAGTGCCTGA
1 TACGACACACAAAGTGCCTGA
94955101 TCGATAAAGC
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
20 1 0.02
21 31 0.61
23 19 0.37
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.17
Consensus pattern (23 bp):
TACGACACACAAAGTGCCTGAAA
Found at i:94955495 original size:15 final size:15
Alignment explanation
Indices: 94955470--94955527 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
94955460 TCATATATAT
94955470 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
94955486 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
94955501 AATAATTTCAATCAA
1 TATAAATTCAATCAA
94955516 TATAAATTCAAT
1 TATAAATTCAAT
94955528 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:94956775 original size:5 final size:5
Alignment explanation
Indices: 94956767--94956793 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
94956757 TCTTTAGTTT
94956767 ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA AT
94956794 TAAAACATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:94960896 original size:47 final size:47
Alignment explanation
Indices: 94960823--94961420 Score: 926
Period size: 47 Copynumber: 12.5 Consensus size: 47
94960813 GTGTGTATAC
94960823 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
94960872 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
94960919 GTGAAAGTGTATATATATGCGATAAGGCCTAATGGTCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
94960968 GTGAAAGTGTATATATGGGATAAGGCCTAACGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
94961015 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
94961064 GTGAAAGTGTATATATATGTGATAAAGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
94961113 GTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
94961162 GTGAAGGTGTATATATGTGGTAAGGCCTAATGGCCGAAGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
94961209 GCGAAAGTGTATATCTGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
94961256 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
94961303 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * ** *
94961350 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACATGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
94961397 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
94961421 TCCCGAAGGG
Statistics
Matches: 511, Mismatches: 32, Indels: 14
0.92 0.06 0.03
Matches are distributed among these distances:
47 322 0.63
49 186 0.36
51 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:94960937 original size:96 final size:96
Alignment explanation
Indices: 94960823--94961420 Score: 956
Period size: 96 Copynumber: 6.3 Consensus size: 96
94960813 GTGTGTATAC
94960823 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
94960888 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
94960919 GTGAAAGTGTATATATATGCGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
94960984 GGGATAAGGCCTAACGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
94961015 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
94961080 ATGTGATAAAGCCTAATGGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
94961113 GTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
94961178 GTGGTAAGGCCTAATGGCCGAAGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
94961209 GCGAAAGTG--TATATCTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
94961272 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
94961303 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * ** *
94961366 GTGACAGGGCCGAGTGGCCAACATGATGGAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
94961397 GTGAAAGTGTATA-A-ATGTGATAAG
1 GTGAAAGTGTATATATATGTGATAAG
94961421 TCCCGAAGGG
Statistics
Matches: 467, Mismatches: 31, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
94 182 0.39
95 1 0.00
96 193 0.41
98 91 0.19
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:94961608 original size:37 final size:37
Alignment explanation
Indices: 94961539--94961617 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
94961529 CCGAGCTCTA
* * *
94961539 AAGACCCGATGACTACGCGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
* *
94961576 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
94961613 AAGAC
1 AAGAC
94961618 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
Found at i:94964408 original size:15 final size:16
Alignment explanation
Indices: 94964359--94964409 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
94964349 TAAATTTTCT
* * *
94964359 TAATTAAAAAGGAAAA
1 TAATGAAAAATGAAAG
*
94964375 TAATGAAATAATAAAAG
1 TAATGAAA-AATGAAAG
94964392 TAATG-AAAATGAAAG
1 TAATGAAAAATGAAAG
94964407 TAA
1 TAA
94964410 AACCAGAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 10 0.34
16 9 0.31
17 10 0.34
ACGTcount: A:0.65, C:0.00, G:0.14, T:0.22
Consensus pattern (16 bp):
TAATGAAAAATGAAAG
Found at i:94967612 original size:17 final size:17
Alignment explanation
Indices: 94967586--94967620 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
94967576 GGAAGATTGG
94967586 ATCAGCACTCAAGTCAC
1 ATCAGCACTCAAGTCAC
*
94967603 ATCAGTACTCAAGTCAC
1 ATCAGCACTCAAGTCAC
94967620 A
1 A
94967621 CTATCCATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.31, G:0.11, T:0.20
Consensus pattern (17 bp):
ATCAGCACTCAAGTCAC
Found at i:94967755 original size:17 final size:17
Alignment explanation
Indices: 94967733--94967773 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
94967723 ATATTTACCT
94967733 TGTTAATATTAGAT-TGA
1 TGTTAATATTA-ATGTGA
94967750 TGTTAATATTAATGTGA
1 TGTTAATATTAATGTGA
*
94967767 TGATAAT
1 TGTTAAT
94967774 TACATGGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (17 bp):
TGTTAATATTAATGTGA
Found at i:94967910 original size:39 final size:39
Alignment explanation
Indices: 94967867--94967946 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
94967857 ACTTATGGTA
94967867 TATGTTGTTCTCAATTTGGCTAGTATAAGGTTAGGTAAT
1 TATGTTGTTCTCAATTTGGCTAGTATAAGGTTAGGTAAT
94967906 TATGTTGTTCTCAATTTGGCTAGTATAAGGTTAGGTAAT
1 TATGTTGTTCTCAATTTGGCTAGTATAAGGTTAGGTAAT
94967945 TA
1 TA
94967947 GCTTAAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.44
Consensus pattern (39 bp):
TATGTTGTTCTCAATTTGGCTAGTATAAGGTTAGGTAAT
Found at i:94980957 original size:24 final size:24
Alignment explanation
Indices: 94980924--94980970 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
94980914 TACTTGGGTA
*
94980924 ATTTTTTGTCAATTCATCCTTTAC
1 ATTTTCTGTCAATTCATCCTTTAC
*
94980948 ATTTTCTGTCAATTCATTCTTTA
1 ATTTTCTGTCAATTCATCCTTTA
94980971 GATTCGTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.21, C:0.19, G:0.04, T:0.55
Consensus pattern (24 bp):
ATTTTCTGTCAATTCATCCTTTAC
Found at i:94981031 original size:33 final size:32
Alignment explanation
Indices: 94980980--94981139 Score: 117
Period size: 33 Copynumber: 4.8 Consensus size: 32
94980970 AGATTCGTAG
* *
94980980 TGCCATAACCCAGTTATGGTCTTATCATT-AGAA
1 TGCCAT-AGCCAGCTATGGTCTTA-CATTCAGAA
* *
94981013 TGCCATAGCCTAGCTATGGTCTTACATATGAAAA
1 TGCCATAGCC-AGCTATGGTCTTACAT-TCAGAA
* * * * * *
94981047 CTACCATGGTCCAACCATGGTCTTACGTTCAGAG
1 -TGCCATAG-CCAGCTATGGTCTTACATTCAGAA
* *
94981081 TGCCATAACCAGTTATGGTCTTATCATT-AGAA
1 TGCCATAGCCAGCTATGGTCTTA-CATTCAGAA
*
94981113 TGCCAGAGCCTAGCTATGGTCTTACAT
1 TGCCATAGCC-AGCTATGGTCTTACAT
94981140 ATAAACACTG
Statistics
Matches: 98, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
32 32 0.33
33 39 0.40
34 6 0.06
35 19 0.19
36 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (32 bp):
TGCCATAGCCAGCTATGGTCTTACATTCAGAA
Found at i:94981241 original size:101 final size:101
Alignment explanation
Indices: 94980972--94981305 Score: 510
Period size: 101 Copynumber: 3.3 Consensus size: 101
94980962 CATTCTTTAG
*
94980972 ATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCTAGCTATGGTCTTA
1 ATTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCTAGCTATGGTCTTA
*
94981037 CATATGAAA-ACTACCATGGTCCAACCATGGTCTTAC
66 CATAT-AAACACTGCCATGGTCCAACCATGGTCTTAC
* * *
94981073 GTTCAGAGTGCCATAA-CCAGTTATGGTCTTATCATTAGAATGCCAGAGCCTAGCTATGGTCTTA
1 ATTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCTAGCTATGGTCTTA
* *
94981137 CATATAAACACTGCTATGGTCCAACCATGGTCTGAC
66 CATATAAACACTGCCATGGTCCAACCATGGTCTTAC
* * * * **
94981173 ATCCATAGTGCCATAACTCAGTTATGGTCTTTTCATTAAAATTTCATAGCCTAGCTATGGTCTTA
1 ATTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCTAGCTATGGTCTTA
*
94981238 CATATAAACAATGCCATGGTCCAACCATGGTCTTAC
66 CATATAAACACTGCCATGGTCCAACCATGGTCTTAC
*
94981274 ATTCATAGTGTCATAACCCAGTTATGGTCTTA
1 ATTCATAGTGCCATAACCCAGTTATGGTCTTA
94981306 CCCGTCAATT
Statistics
Matches: 208, Mismatches: 23, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
99 3 0.01
100 89 0.43
101 116 0.56
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (101 bp):
ATTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCTAGCTATGGTCTTA
CATATAAACACTGCCATGGTCCAACCATGGTCTTAC
Found at i:94992897 original size:54 final size:54
Alignment explanation
Indices: 94992789--94992900 Score: 170
Period size: 54 Copynumber: 2.1 Consensus size: 54
94992779 TTGCCAGAGA
*
94992789 GCTTGGCAAGTTGCGATCGTTGGCTTGGGCCTAGAGAACTGGGGTCGCCAGTGG
1 GCTTGGCAAGTTGCGATCGTTGGCTTGGGCCTAGAGAACTGGGGTCACCAGTGG
* * * **
94992843 GCTTGGCGAGTTGCGATTGTTGGCTTGGGCCTAGAGAATTGGGGTCACTTGTGG
1 GCTTGGCAAGTTGCGATCGTTGGCTTGGGCCTAGAGAACTGGGGTCACCAGTGG
94992897 GCTT
1 GCTT
94992901 AGTGAGCTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.13, C:0.18, G:0.40, T:0.29
Consensus pattern (54 bp):
GCTTGGCAAGTTGCGATCGTTGGCTTGGGCCTAGAGAACTGGGGTCACCAGTGG
Found at i:95008030 original size:43 final size:43
Alignment explanation
Indices: 95007994--95008141 Score: 192
Period size: 43 Copynumber: 3.4 Consensus size: 43
95007984 CCCAGATACA
*
95007994 GTCTTACATGTTATCACATATCGATGCCAATGTCCCAGACATG
1 GTCTTACATGTAATCACATATCGATGCCAATGTCCCAGACATG
* * * *
95008037 GTCTTACACGAAATCATATAACGATGCCAATGTCCCAGACATG
1 GTCTTACATGTAATCACATATCGATGCCAATGTCCCAGACATG
* *
95008080 GTCTTACACT-TAATCACA-ATACAATGCCAATGTCCTAGACATG
1 GTCTTACA-TGTAATCACATAT-CGATGCCAATGTCCCAGACATG
*
95008123 GGCTTACATGTAATCACAT
1 GTCTTACATGTAATCACAT
95008142 CTCAGTAATC
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
42 2 0.02
43 87 0.98
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
GTCTTACATGTAATCACATATCGATGCCAATGTCCCAGACATG
Found at i:95014450 original size:46 final size:47
Alignment explanation
Indices: 95014335--95014509 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 47
95014325 AATCGAGGCT
* * * * *
95014335 GATGCCATGTCCCAGAGATGGTCTTACGCTAGCTCTCACATATC-CGTACT
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTCT--CATCTCAAG-ACC
* *
95014385 GATGCCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCAAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAGACC
* * *
95014432 GATG-CATGTCCTAGACATGTCTTACACTAGCTCTTATCTCAATACC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGACC
* *
95014478 AATGCCATCTCCCAGACATGTCTTACACTAGC
1 GATGCCATGTCCCAGACATGTCTTACACTAGC
95014510 ACACAAATAA
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
46 38 0.36
47 37 0.35
48 2 0.02
49 12 0.11
50 18 0.17
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGACC
Found at i:95016310 original size:33 final size:33
Alignment explanation
Indices: 95016261--95016377 Score: 139
Period size: 33 Copynumber: 3.6 Consensus size: 33
95016251 ATGGACCTTT
* * *
95016261 CCTTTTCTAGTTGTACACCCGAGGTGCACACT-C
1 CCTTTTCAAGTTGTACACACGAAGTGCACA-TAC
* *
95016294 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGTTGTACACACGAAGTGCACATAC
* * *
95016327 CCTTTTCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAAGTTGTACACACGAAGTGCACATAC
95016360 CCTTTTCAAG-TGTACACA
1 CCTTTTCAAGTTGTACACA
95016378 TATAGTGTAC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
32 9 0.12
33 63 0.88
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (33 bp):
CCTTTTCAAGTTGTACACACGAAGTGCACATAC
Found at i:95016462 original size:33 final size:33
Alignment explanation
Indices: 95016294--95016468 Score: 127
Period size: 33 Copynumber: 5.3 Consensus size: 33
95016284 GTGCACACTC
* * * * * *
95016294 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAATGGTATACACAAAGTATACCTAA
* * * ** *
95016327 CCTTTTCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAAATGGTATACACAAAGTATACCTAA
* * * * * **
95016360 CCTTTTCAAGT-GTACACATATAGTGTACCTTT
1 CCTTTTCAAATGGTATACACAAAGTATACCTAA
* * **
95016392 CATTTTCAAATGGTATACACAGAGTATACCTTT
1 CCTTTTCAAATGGTATACACAAAGTATACCTAA
*
95016425 CCTTTTCATATGGTATACACAAAGTATACCTAA
1 CCTTTTCAAATGGTATACACAAAGTATACCTAA
95016458 CCTTTTCAAAT
1 CCTTTTCAAAT
95016469 TGTACCATTT
Statistics
Matches: 117, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
32 24 0.21
33 93 0.79
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.34
Consensus pattern (33 bp):
CCTTTTCAAATGGTATACACAAAGTATACCTAA
Found at i:95017201 original size:21 final size:22
Alignment explanation
Indices: 95017155--95017197 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
95017145 TGTAAAAGTG
*
95017155 ATTTCTCTATTCATAACCTTTC
1 ATTTCTCTATTCATAAACTTTC
95017177 ATTT-TCTA-TCATAAACTTTC
1 ATTTCTCTATTCATAAACTTTC
95017197 A
1 A
95017198 ATTTACAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
21 4 0.20
22 4 0.20
ACGTcount: A:0.28, C:0.23, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTTCTCTATTCATAAACTTTC
Found at i:95024883 original size:49 final size:47
Alignment explanation
Indices: 95024769--95025176 Score: 202
Period size: 46 Copynumber: 8.7 Consensus size: 47
95024759 GGGTATAGTA
* *
95024769 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAG
* * * *
95024816 TCGATGCCATGTCCCAGACATAGTCTTACACTTAC-CATCGAAATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AAG
* * * *
95024865 CCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATATTTATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACTCATCA-A-TCAAG
* * * * * **
95024915 CCGATGCTATGTCCTAGACATGGTCTTACACTGACACCTCTATACGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAAT-CAAG
* * * * * * *
95024963 ACGATTCCATGTTCCAGATATAGTCTTACAGTGACACATC--TCATAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCA-AG
* * * * *
95025009 TCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATC-TTGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGAC-T-CATCAATCAAG
* * * *
95025055 CTGATG-CATGTCCCAGACAT-GTCATATACT-AGCTC-TCGATTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATC-AATCAA-G
* * * *
95025101 CCAATGCCATGT-CTAGACAAGGTCTTACACTGGCTC-TC-AT-AATTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA---G
*
95025147 CCGATG-CATGTCCTAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
95025177 AGCACACAAA
Statistics
Matches: 277, Mismatches: 60, Indels: 50
0.72 0.16 0.13
Matches are distributed among these distances:
43 2 0.01
44 14 0.05
45 33 0.12
46 66 0.24
47 52 0.19
48 39 0.14
49 34 0.12
50 32 0.12
51 3 0.01
52 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAG
Found at i:95029160 original size:43 final size:43
Alignment explanation
Indices: 95029113--95029209 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 43
95029103 CAATGTTTCG
* *
95029113 GACATGGTCTTACACGA-AATCA-TATAACGATACCAATGTCCCA
1 GACATGGTCTTACAC-ATAATCACAAT-ACAATACCAATGTCCCA
* * *
95029156 GACATAGTCTTGCACATAATCACAATACAATGCCAATGTCCCA
1 GACATGGTCTTACACATAATCACAATACAATACCAATGTCCCA
95029199 GACATGGTCTT
1 GACATGGTCTT
95029210 CCATGTAATC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 1 0.02
43 43 0.93
44 2 0.04
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (43 bp):
GACATGGTCTTACACATAATCACAATACAATACCAATGTCCCA
Found at i:95037308 original size:40 final size:40
Alignment explanation
Indices: 95037271--95037416 Score: 197
Period size: 40 Copynumber: 3.7 Consensus size: 40
95037261 TGAGGAATTG
*
95037271 TATCTGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
95037311 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
* * * * * *
95037351 TATCTGGGTTTAATGACCCGCAGGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATGT
*
95037391 TATCCGGGC-TAGAGACCCGCAGGCTA
1 TATCCGGGCTTAAAGACCCGCAGGCTA
95037417 CGATCTAGTA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
Found at i:95037958 original size:14 final size:14
Alignment explanation
Indices: 95037939--95037966 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
95037929 AAATGATTAA
95037939 AACTTACTAAGCCT
1 AACTTACTAAGCCT
95037953 AACTTACTAAGCCT
1 AACTTACTAAGCCT
95037967 CGAAAGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.07, T:0.29
Consensus pattern (14 bp):
AACTTACTAAGCCT
Found at i:95039029 original size:119 final size:119
Alignment explanation
Indices: 95038818--95039057 Score: 453
Period size: 119 Copynumber: 2.0 Consensus size: 119
95038808 CTTACTCTGC
95038818 TTAGGTGGGAGTTCATTCAAACGCTTGGGTTGCTCATCCTTGTAATCATAACTCCATTGGTTTTT
1 TTAGGTGGGAGTTCATTCAAACGCTTGGGTTGCTCATCCTTGTAATCATAACTCCATTGGTTTTT
*
95038883 CGAATCTCCTTACAATTAACTCAATTTGGATTGTTCGTACATCAACCTATAAAA
66 CGAATCTCCTTACAATTAACTCAATTTGGATTGTCCGTACATCAACCTATAAAA
*
95038937 TTAGGTGGGAGTTCATTCAAACGCTTGGGTTGCTCGTCCTTGTAATCATAACTCCATTGGTTTTT
1 TTAGGTGGGAGTTCATTCAAACGCTTGGGTTGCTCATCCTTGTAATCATAACTCCATTGGTTTTT
*
95039002 CGAATCTCCTTACTATTAACTCAATTTGGATTGTCCGTACATCAACCTATAAAA
66 CGAATCTCCTTACAATTAACTCAATTTGGATTGTCCGTACATCAACCTATAAAA
95039056 TT
1 TT
95039058 TCAAATTCAT
Statistics
Matches: 118, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 118 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (119 bp):
TTAGGTGGGAGTTCATTCAAACGCTTGGGTTGCTCATCCTTGTAATCATAACTCCATTGGTTTTT
CGAATCTCCTTACAATTAACTCAATTTGGATTGTCCGTACATCAACCTATAAAA
Found at i:95039148 original size:37 final size:38
Alignment explanation
Indices: 95039079--95039170 Score: 159
Period size: 37 Copynumber: 2.4 Consensus size: 38
95039069 ATTAAATCTG
*
95039079 ATAATCAACAAGGTAAGTAAAAAAAATCAAAAATAAAAA
1 ATAATCAACAAGGTAAG-AAAAAAAATAAAAAATAAAAA
95039118 ATAATCAACAAGGTAAG-AAAAAAATAAAAAATAAAAA
1 ATAATCAACAAGGTAAGAAAAAAAATAAAAAATAAAAA
95039155 ATAATCAACAAGGTAA
1 ATAATCAACAAGGTAA
95039171 ATAATAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
37 35 0.67
39 17 0.33
ACGTcount: A:0.68, C:0.08, G:0.09, T:0.15
Consensus pattern (38 bp):
ATAATCAACAAGGTAAGAAAAAAAATAAAAAATAAAAA
Found at i:95039610 original size:14 final size:15
Alignment explanation
Indices: 95039591--95039629 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
95039581 ATAATATTTT
95039591 AATTAAACTAA-TTA
1 AATTAAACTAACTTA
95039605 AATT-AACTAACTTA
1 AATTAAACTAACTTA
*
95039619 AATTAACCTAA
1 AATTAAACTAA
95039630 AGGATTTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 6 0.27
14 11 0.50
15 5 0.23
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (15 bp):
AATTAAACTAACTTA
Found at i:95040719 original size:23 final size:22
Alignment explanation
Indices: 95040689--95040731 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
95040679 CAGAAACATG
**
95040689 TCCACCAACCCTGCACACCAAC
1 TCCACCAACCCAACACACCAAC
95040711 TCCATCCAACCCAACACACCA
1 TCCA-CCAACCCAACACACCA
95040732 TGTGGGGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.35, C:0.53, G:0.02, T:0.09
Consensus pattern (22 bp):
TCCACCAACCCAACACACCAAC
Found at i:95040781 original size:40 final size:40
Alignment explanation
Indices: 95040707--95040809 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
95040697 CCCTGCACAC
* * *
95040707 CAACTCCATCCAACCCAACACACC--ATGTGGGGATAAAAT
1 CAAC-CCACCCAACCCTACACACCAAATATGGGGATAAAAT
* *
95040746 CGACCCACCCATCCCTACACACCAAATATGGGGATAAAAT
1 CAACCCACCCAACCCTACACACCAAATATGGGGATAAAAT
*
95040786 CAACCCATCCAACCCTACACACCA
1 CAACCCACCCAACCCTACACACCA
95040810 TAGAGTACCG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
38 16 0.30
39 3 0.06
40 35 0.65
ACGTcount: A:0.38, C:0.39, G:0.10, T:0.14
Consensus pattern (40 bp):
CAACCCACCCAACCCTACACACCAAATATGGGGATAAAAT
Found at i:95052642 original size:72 final size:72
Alignment explanation
Indices: 95052557--95052697 Score: 273
Period size: 72 Copynumber: 2.0 Consensus size: 72
95052547 TTCAAAACAA
95052557 CATGCATTAAACCAATCAAAGCATGCATATATTATATATTTATATATATAAATGAAACATACGAA
1 CATGCATTAAACCAATCAAAGCATGCATATATTATATATTTATATATATAAATGAAACATACGAA
95052622 ACTACAG
66 ACTACAG
*
95052629 CATGCATTAAACCAATCAAAGCATGCATATATTATATATTTATGTATATAAATGAAACATACGAA
1 CATGCATTAAACCAATCAAAGCATGCATATATTATATATTTATATATATAAATGAAACATACGAA
95052694 ACTA
66 ACTA
95052698 TGAACTTCTT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.30
Consensus pattern (72 bp):
CATGCATTAAACCAATCAAAGCATGCATATATTATATATTTATATATATAAATGAAACATACGAA
ACTACAG
Found at i:95072714 original size:21 final size:21
Alignment explanation
Indices: 95072682--95072722 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
95072672 GAACATTTGG
95072682 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
95072703 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
95072723 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:95074670 original size:26 final size:26
Alignment explanation
Indices: 95074634--95074685 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
95074624 CACCACTGAA
* *
95074634 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
95074660 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
95074686 CTTTTTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:95074783 original size:71 final size:70
Alignment explanation
Indices: 95074646--95074836 Score: 213
Period size: 71 Copynumber: 2.6 Consensus size: 70
95074636 GGGGAATCAT
** *
95074646 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATACAATGG
95074711 AT-ATCG
65 ATCA-CG
***
95074717 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTGG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATACAATGG
95074782 ATCACG
65 ATCACG
* * *
95074788 CACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCTTT
1 CACTTAGCA--ACCC----CTCGGGGAATCAGCACATAGCAACCCCTTT
95074837 TATATACAAC
Statistics
Matches: 103, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
71 50 0.49
72 21 0.20
73 4 0.04
76 26 0.25
77 2 0.02
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.21
Consensus pattern (70 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATACAATGGA
TCACG
Found at i:95075195 original size:29 final size:29
Alignment explanation
Indices: 95075162--95075217 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
95075152 TCCACCACCC
*
95075162 AACTTTTGGAAAATTACAATTTTGCCCCA
1 AACTTTTGCAAAATTACAATTTTGCCCCA
* *
95075191 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTTGCAAAATTACAATTTTGCCC
95075218 AAGCTCGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (29 bp):
AACTTTTGCAAAATTACAATTTTGCCCCA
Found at i:95085486 original size:20 final size:21
Alignment explanation
Indices: 95085448--95085487 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
95085438 GAACATTTGG
95085448 TGTATAGGCTAAGAAAGGCCT
1 TGTATAGGCTAAGAAAGGCCT
95085469 TGTAT-GGCTAA-AACAGGCC
1 TGTATAGGCTAAGAA-AGGCC
95085488 CCGAGCCTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 11 0.61
21 5 0.28
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.23
Consensus pattern (21 bp):
TGTATAGGCTAAGAAAGGCCT
Found at i:95094891 original size:27 final size:25
Alignment explanation
Indices: 95094842--95094894 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 25
95094832 CACCACTGAA
*
95094842 TCGGGGAATCATCACTAGCAACCCC
1 TCGGGGAATCAGCACTAGCAACCCC
95094867 TCGGGGAAATCAGCACATAGCAACCCC
1 TCGGGG-AATCAGCAC-TAGCAACCCC
95094894 T
1 T
95094895 TTTTCATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 6 0.24
26 8 0.32
27 11 0.44
ACGTcount: A:0.30, C:0.34, G:0.21, T:0.15
Consensus pattern (25 bp):
TCGGGGAATCAGCACTAGCAACCCC
Found at i:95094990 original size:71 final size:71
Alignment explanation
Indices: 95094857--95095003 Score: 206
Period size: 71 Copynumber: 2.1 Consensus size: 71
95094847 GAATCATCAC
** *
95094857 TAGCAACCCCTCGGGGAAATCAGCACATAGCAACCCCTTTTTCATTTCAAATATACAATGGAT-A
1 TAGCAACCCCTCGGGGAAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATACAATGGATCA
*
95094921 TCGCACT
66 -CGCACA
* ***
95094928 TAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTGGATCA
1 TAGCAACCCCTCGGGGAAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATACAATGGATCA
95094993 CGCACA
66 CGCACA
95094999 TAGCA
1 TAGCA
95095004 CCACCCATAA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
71 66 0.99
72 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (71 bp):
TAGCAACCCCTCGGGGAAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATACAATGGATCA
CGCACA
Found at i:95097571 original size:21 final size:22
Alignment explanation
Indices: 95097546--95097593 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
95097536 GAATTTACTA
*
95097546 ATTTTATAATT-GAAA-ATAAT
1 ATTTTACAATTCGAAACATAAT
95097566 AGTTTT-CAATTCGAAACATAAT
1 A-TTTTACAATTCGAAACATAAT
95097588 ATTTTA
1 ATTTTA
95097594 AATACTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
20 5 0.22
21 12 0.52
22 6 0.26
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (22 bp):
ATTTTACAATTCGAAACATAAT
Found at i:95099498 original size:22 final size:21
Alignment explanation
Indices: 95099472--95099523 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
95099462 CTCTGCTTTG
*
95099472 TTCTTGTTCATTACAGTGTTGT
1 TTCTTCTTCATTACAGTG-TGT
95099494 TTCTTCTTCATTACAGTGTGT
1 TTCTTCTTCATTACAGTGTGT
95099515 TGTCTTCTT
1 T-TCTTCTT
95099524 ACACATACTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.12, C:0.17, G:0.15, T:0.56
Consensus pattern (21 bp):
TTCTTCTTCATTACAGTGTGT
Found at i:95100498 original size:18 final size:19
Alignment explanation
Indices: 95100475--95100511 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
95100465 TCTAGCCTCG
95100475 TTAGAGTGAG-ATTTGAGT
1 TTAGAGTGAGAATTTGAGT
95100493 TTAGAGTGAGAATTTGAGT
1 TTAGAGTGAGAATTTGAGT
95100512 ACATGTTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.32, T:0.38
Consensus pattern (19 bp):
TTAGAGTGAGAATTTGAGT
Found at i:95101135 original size:46 final size:45
Alignment explanation
Indices: 95101082--95101257 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
95101072 TATTTGGGCA
95101082 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
95101128 TCCGAACTCGTTGAGTTGAGTACGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
95101175 TCCGAGCTCGTTTGAGTTGAGTCCGA-CTCACTTATGGATGCGAACG
1 TCCGAACTCG-TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
95101221 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95101258 GCGGGTGTAC
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 16 0.15
46 51 0.49
47 15 0.14
48 15 0.14
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:95101237 original size:93 final size:93
Alignment explanation
Indices: 95101078--95101249 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
95101068 AGGATATTTG
* * *
95101078 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
95101143 TTGAGTACGAGTTCGAGAGATGTAACTA
66 TTGAGTACGAGTTCGAGAGATGTAACTA
* *
95101171 GGCATCCGAGCTCGTTTGAGTTGAGTCCGA-CTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
1 GGCATCCGAACTCG-TTGAGTTGAGTCCGAGCTCACTTATGGATGCGAACGCCCGAACTCGTTGA
*
95101235 GTTGAGTCCGAGTTC
65 GTTGAGTACGAGTTC
95101250 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 57 0.79
94 15 0.21
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTACGAGTTCGAGAGATGTAACTA
Found at i:95103549 original size:93 final size:93
Alignment explanation
Indices: 95103434--95103605 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
95103424 GCCCATAAGT
* * *
95103434 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAAGTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
95103499 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
95103527 GAACTCGTACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
95103592 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
95103606 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:95103601 original size:46 final size:46
Alignment explanation
Indices: 95103426--95103601 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
95103416 TGTAACCCGC
* *
95103426 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
95103472 CCATAAGTGAAGTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
95103518 ACATCTCTCGAACTCGTACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
95103565 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
95103602 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.64
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:95104204 original size:19 final size:19
Alignment explanation
Indices: 95104152--95104216 Score: 85
Period size: 19 Copynumber: 3.2 Consensus size: 19
95104142 CTTCTATGGC
95104152 AACATCAAATTCTCACTCT
1 AACATCAAATTCTCACTCT
95104171 AACATGTACTCAAATTCTCACTCT
1 AAC----A-TCAAATTCTCACTCT
95104195 AACATCAAATTCTCACTCT
1 AACATCAAATTCTCACTCT
95104214 AAC
1 AAC
95104217 GAGGCTAGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
19 21 0.51
20 1 0.02
23 1 0.02
24 18 0.44
ACGTcount: A:0.37, C:0.31, G:0.02, T:0.31
Consensus pattern (19 bp):
AACATCAAATTCTCACTCT
Found at i:95105199 original size:22 final size:22
Alignment explanation
Indices: 95105172--95105227 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
95105162 GAGTATGTGT
95105172 AAGAAGAAACAACACTGTAATG
1 AAGAAGAAACAACACTGTAATG
95105194 AAGAAGAAACAACACTGTAATG
1 AAGAAGAAACAACACTGTAATG
*
95105216 AACAAGAAACAA
1 AAGAAGAAACAA
95105228 AGCAAGATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.59, C:0.14, G:0.16, T:0.11
Consensus pattern (22 bp):
AAGAAGAAACAACACTGTAATG
Found at i:95107311 original size:17 final size:17
Alignment explanation
Indices: 95107281--95107314 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
95107271 GATTTATGAT
95107281 TTGAATATGAAATGAAA
1 TTGAATATGAAATGAAA
95107298 TTGAA-ATGAGAATGAAA
1 TTGAATATGA-AATGAAA
95107315 ATGAGAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.53, C:0.00, G:0.21, T:0.26
Consensus pattern (17 bp):
TTGAATATGAAATGAAA
Found at i:95108584 original size:5 final size:5
Alignment explanation
Indices: 95108574--95108599 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
95108564 ATTATGTGTG
95108574 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
95108600 CACACAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:95113025 original size:5 final size:5
Alignment explanation
Indices: 95113015--95113045 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
95113005 CCAATTTGTG
95113015 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
95113046 CACACAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:95114779 original size:55 final size:55
Alignment explanation
Indices: 95114616--95114780 Score: 233
Period size: 55 Copynumber: 3.0 Consensus size: 55
95114606 TCTTCTTAGT
* * * *
95114616 TGTTGGAATACTGCTTCTTTAGAATTGATTTTTTATATGTTTAAATCCATTGTCA
1 TGTTGGAATACTGCTTCTTTTGAATTGATTATTTATATGTTTAAATCAATTGTTA
*
95114671 TGTTGGAATACTGCTTCTTTTGAATTGATTGTTTATATGTTT-AATCATATTGTTA
1 TGTTGGAATACTGCTTCTTTTGAATTGATTATTTATATGTTTAAATCA-ATTGTTA
* ** *
95114726 TGTTGGAATCCTATTTCTTTTGAATCGATTATTTATATGTTTAAATCAATTGTTA
1 TGTTGGAATACTGCTTCTTTTGAATTGATTATTTATATGTTTAAATCAATTGTTA
95114781 CATAGCACAT
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
54 4 0.04
55 90 0.91
56 5 0.05
ACGTcount: A:0.25, C:0.09, G:0.15, T:0.51
Consensus pattern (55 bp):
TGTTGGAATACTGCTTCTTTTGAATTGATTATTTATATGTTTAAATCAATTGTTA
Found at i:95116871 original size:47 final size:47
Alignment explanation
Indices: 95116674--95117034 Score: 167
Period size: 47 Copynumber: 7.7 Consensus size: 47
95116664 GATAAATTGC
* * * *
95116674 CAATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATATATGTGTGT
1 CAATGCCATGTCCCAGACAT-GTCTTACACTGGCACTCATCT-TG-ATGT
** * * *
95116724 TGATG-CATGTCCCAGACATGTCTTACACTAGCAC-AACTCTT-A-GC
1 CAATGCCATGTCCCAGACATGTCTTACACTGGCACTCA-TCTTGATGT
* * * ** * *
95116768 CGATG-CGTGTCCCAGACACGTCTTACGTTGGCTA-T-ATCTGTCGAGGC
1 CAATGCCATGTCCCAGACATGTCTTACACTGGC-ACTCATCT-T-GATGT
* *
95116815 CGATG-CATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTG-TGT
1 CAATGCCATGTCCCAGACATGTCTTACACTGGCACTCATCT-TGATGT
* * * **
95116861 CAATGCCATGTCCCATACAGGGTCTTACACTGGCTCTCATAAT-ATGCTT
1 CAATGCCATGTCCCAGACA-TGTCTTACACTGGCACTCATCTTGATG--T
* * * * * * *
95116910 GAA-G-CATGTCCCAGACATGTCTTACAGTAGCCCTCGTCTGGATGC
1 CAATGCCATGTCCCAGACATGTCTTACACTGGCACTCATCTTGATGT
* * * **
95116955 CAATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAATG-TGGCT
1 CAATGCCATGTCCCAGACAT-GTCTTACACTGGCACTCATCTTGAT-G-T
*
95117004 GAA-G-CATGTCCCAGACATGTCTTACACTGGC
1 CAATGCCATGTCCCAGACATGTCTTACACTGGC
95117035 GCACATATCA
Statistics
Matches: 239, Mismatches: 52, Indels: 44
0.71 0.16 0.13
Matches are distributed among these distances:
43 3 0.01
44 29 0.12
45 3 0.01
46 34 0.14
47 93 0.39
48 56 0.23
49 18 0.08
50 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
CAATGCCATGTCCCAGACATGTCTTACACTGGCACTCATCTTGATGT
Found at i:95116930 original size:94 final size:94
Alignment explanation
Indices: 95116671--95117034 Score: 305
Period size: 94 Copynumber: 3.9 Consensus size: 94
95116661 TGGGATAAAT
* * * * * *
95116671 TGCCAATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATATATGTGTGTTGATGCATGTCC
1 TGCCAATGCCATGTCCCAGACAGGGTCTTACACTAGCTCTCATA-ATATG-GCTGAAGCATGTCC
* * *
95116736 CAGACATGTCTTACACTAGCAC-AACTCT-TA
64 CAGACATGTCTTACACTGGCACTCA-TCTGGA
* * * ** * * * * * *
95116766 -GCCGATG-CGTGTCCCAGACA-CGTCTTACGTTGGCTAT-AT-CTGTCGAGGCCGATGCATGTC
1 TGCCAATGCCATGTCCCAGACAGGGTCTTACACTAGCTCTCATAATAT---GGCTGAAGCATGTC
* *
95116826 CCAGACATGTCTTACTCTGGCACTCATCTCTG-
63 CCAGACATGTCTTACACTGGCACTCATCT-GGA
* * *
95116858 TGTCAATGCCATGTCCCATACAGGGTCTTACACTGGCTCTCATAATAT-GCTTGAAGCATGTCCC
1 TGCCAATGCCATGTCCCAGACAGGGTCTTACACTAGCTCTCATAATATGGC-TGAAGCATGTCCC
* * * *
95116922 AGACATGTCTTACAGTAGCCCTCGTCTGGA
65 AGACATGTCTTACACTGGCACTCATCTGGA
* * *
95116952 TGCCAATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAATGTGGCTGAAGCATGTCCCA
1 TGCCAATGCCATGTCCCAGACAGGGTCTTACACTAGCTCTCATAATATGGCTGAAGCATGTCCCA
95117017 GACATGTCTTACACTGGC
66 GACATGTCTTACACTGGC
95117035 GCACATATCA
Statistics
Matches: 215, Mismatches: 40, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
89 3 0.01
91 37 0.17
92 15 0.07
93 19 0.09
94 122 0.57
95 15 0.07
96 2 0.01
97 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (94 bp):
TGCCAATGCCATGTCCCAGACAGGGTCTTACACTAGCTCTCATAATATGGCTGAAGCATGTCCCA
GACATGTCTTACACTGGCACTCATCTGGA
Found at i:95124356 original size:12 final size:12
Alignment explanation
Indices: 95124339--95124367 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
95124329 TTAAACTCTA
95124339 CCATCACTCTTT
1 CCATCACTCTTT
95124351 CCATCACTCTTT
1 CCATCACTCTTT
95124363 CCATC
1 CCATC
95124368 CATTTATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.45, G:0.00, T:0.38
Consensus pattern (12 bp):
CCATCACTCTTT
Found at i:95129400 original size:13 final size:13
Alignment explanation
Indices: 95129384--95129408 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95129374 TTTGTTAAAA
95129384 TTTTAATTAATAT
1 TTTTAATTAATAT
95129397 TTTTAATTAATA
1 TTTTAATTAATA
95129409 AATATATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAATTAATAT
Found at i:95130815 original size:49 final size:49
Alignment explanation
Indices: 95130739--95130836 Score: 115
Period size: 49 Copynumber: 2.0 Consensus size: 49
95130729 ATAATCACAA
** * **
95130739 GTTGAAGTATAACTAGGGCTCTTAGTTGACGGTAGTTATACGGTCACGG
1 GTTGAAGTATAACTAGGGAGCTCAGTTGACAATAGTTATACGGTCACGG
* * * *
95130788 GTTGGAGTATAACTCGGGAGCTCAGTTGACAATGGTTATGCGGTCACGG
1 GTTGAAGTATAACTAGGGAGCTCAGTTGACAATAGTTATACGGTCACGG
95130837 ATTTAAGTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.23, C:0.15, G:0.33, T:0.29
Consensus pattern (49 bp):
GTTGAAGTATAACTAGGGAGCTCAGTTGACAATAGTTATACGGTCACGG
Found at i:95133219 original size:18 final size:18
Alignment explanation
Indices: 95133196--95133231 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
95133186 TGCACCCTTA
95133196 CACTTATCA-TATTCATAT
1 CACTTATCACT-TTCATAT
95133214 CACTTATCACTTTCATAT
1 CACTTATCACTTTCATAT
95133232 AATGCACTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.31, C:0.25, G:0.00, T:0.44
Consensus pattern (18 bp):
CACTTATCACTTTCATAT
Found at i:95138858 original size:35 final size:32
Alignment explanation
Indices: 95138802--95138870 Score: 84
Period size: 35 Copynumber: 2.1 Consensus size: 32
95138792 TATCTAAAAT
* *
95138802 TTATCCTGGATTCTAGATTCTTGGGTTCTGAA
1 TTATCCTGGATTCTAGATTCTTGAGTTCTAAA
*
95138834 TTATCCTAGGATTTCTGGGATTCTTGAGTTCTAAA
1 TTATCCT-GGA-TTCT-AGATTCTTGAGTTCTAAA
95138869 TT
1 TT
95138871 CTATTAGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 7 0.23
33 3 0.10
34 4 0.13
35 17 0.55
ACGTcount: A:0.20, C:0.14, G:0.20, T:0.45
Consensus pattern (32 bp):
TTATCCTGGATTCTAGATTCTTGAGTTCTAAA
Done.