Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 283 of 362
Found at i:95391963 original size:18 final size:20
Alignment explanation
Indices: 95391930--95392046 Score: 79
Period size: 18 Copynumber: 6.1 Consensus size: 20
95391920 AGATTAAGTT
*
95391930 TTTTTTATTATATATTGCTA
1 TTTTTTATTATATATTACTA
95391950 TTTTTTA-TAT-TATTACTA
1 TTTTTTATTATATATTACTA
*
95391968 TTATTATTATTTTATATTA-T-
1 TT-TT-TTATTATATATTACTA
* * * *
95391988 TATTATGTTATAT-TTAGTA
1 TTTTTTATTATATATTACTA
*
95392007 TTATTT-TTA-ATATTA-TA
1 TTTTTTATTATATATTACTA
*
95392024 TTTTTTACTATTATATTACTA
1 TTTTTTATTA-TATATTACTA
95392045 TT
1 TT
95392047 ATCTTTGTTA
Statistics
Matches: 75, Mismatches: 11, Indels: 21
0.70 0.10 0.20
Matches are distributed among these distances:
17 12 0.16
18 24 0.32
19 10 0.13
20 17 0.23
21 7 0.09
22 5 0.07
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (20 bp):
TTTTTTATTATATATTACTA
Found at i:95391969 original size:9 final size:8
Alignment explanation
Indices: 95391954--95392041 Score: 51
Period size: 8 Copynumber: 11.0 Consensus size: 8
95391944 TTGCTATTTT
95391954 TTATATTA
1 TTATATTA
95391962 TTACTATTA
1 TTA-TATTA
95391971 TTATTATT-
1 TTA-TATTA
95391979 TTATATTA
1 TTATATTA
*
95391987 TTAT-TATG
1 TTATAT-TA
95391995 TTATA-T-
1 TTATATTA
95392001 TTAGTATTA
1 TTA-TATTA
* *
95392010 TTTTTAATA
1 -TTATATTA
95392019 TTATATT-
1 TTATATTA
* *
95392026 TTTTACTA
1 TTATATTA
95392034 TTATATTA
1 TTATATTA
95392042 CTATTATCTT
Statistics
Matches: 61, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
6 3 0.05
7 13 0.21
8 27 0.44
9 16 0.26
10 2 0.03
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (8 bp):
TTATATTA
Found at i:95391972 original size:3 final size:3
Alignment explanation
Indices: 95391957--95392183 Score: 84
Period size: 3 Copynumber: 77.0 Consensus size: 3
95391947 CTATTTTTTA
* *
95391957 TAT TAT TAC TAT TAT TAT TAT T-T TA- TAT TAT TAT TA- TGT TA- TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * *
95392002 TAG TAT TAT TTT TAA TAT TA- TAT T-T T-T TAC TAT TA- TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
95392046 TAT CT-T TGT TAT T-T TCT CTAT TAC TATT TAT TACT CTAT TTT TAA
1 TAT -TAT TAT TAT TAT TAT -TAT TAT TA-T TAT TA-T -TAT TAT TAT
* * * * * *
95392091 CAT TAT TA- TAA TAT TA- TATT TGT TTT TTT TAT ATCT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT -TAT TAT TAT TAT
** * *
95392136 TGC TAG TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T CTAG TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
95392181 TAT
1 TAT
95392184 ATATACAATA
Statistics
Matches: 166, Mismatches: 37, Indels: 42
0.68 0.15 0.17
Matches are distributed among these distances:
2 23 0.14
3 129 0.78
4 12 0.07
5 2 0.01
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:95392434 original size:27 final size:27
Alignment explanation
Indices: 95392379--95392467 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
95392369 TTTTTAATAC
* *
95392379 TATATTTTTAATACCCTATGTATTG--TG
1 TATATTCTTAATA--CTATATATTGTATG
95392406 TATATTCTTAATACTATATATTGTATG
1 TATATTCTTAATACTATATATTGTATG
* *
95392433 TATTTTCTTAATAACTATATTATATGTATA
1 TATATTCTTAAT-ACTATA-TAT-TGTATG
95392463 TATAT
1 TATAT
95392468 ACTATGTACA
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
25 9 0.17
27 25 0.48
28 6 0.12
29 3 0.06
30 9 0.17
ACGTcount: A:0.33, C:0.08, G:0.07, T:0.53
Consensus pattern (27 bp):
TATATTCTTAATACTATATATTGTATG
Found at i:95392458 original size:26 final size:26
Alignment explanation
Indices: 95392404--95392463 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
95392394 CTATGTATTG
*
95392404 TGTATATTCTTAATACTATATATTGTA
1 TGTATATTCTTAATAC-ATATATTATA
*
95392431 TGTATTTTCTTAATA-ACTATATTATA
1 TGTATATTCTTAATACA-TATATTATA
95392457 TGTATAT
1 TGTATAT
95392464 ATATACTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 14 0.48
27 14 0.48
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (26 bp):
TGTATATTCTTAATACATATATTATA
Found at i:95392829 original size:22 final size:23
Alignment explanation
Indices: 95392772--95392834 Score: 78
Period size: 22 Copynumber: 2.8 Consensus size: 23
95392762 TTTTTTTATA
95392772 TATTATTATGTATATATTTTAAC
1 TATTATTATGTATATATTTTAAC
* *
95392795 -ATTACTA-GTTATATATTTTTAC
1 TATTATTATG-TATATATTTTAAC
95392817 TATT-TTATGTATATATTT
1 TATTATTATGTATATATTT
95392835 CAAATACTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 1 0.03
22 29 0.85
23 4 0.12
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (23 bp):
TATTATTATGTATATATTTTAAC
Found at i:95393816 original size:16 final size:17
Alignment explanation
Indices: 95393795--95393829 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
95393785 TGATATTTGG
95393795 ATGATTAAAATATT-TT
1 ATGATTAAAATATTGTT
*
95393811 ATGATTAAATTATTGTT
1 ATGATTAAAATATTGTT
95393828 AT
1 AT
95393830 TAAATATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (17 bp):
ATGATTAAAATATTGTT
Found at i:95393867 original size:22 final size:24
Alignment explanation
Indices: 95393815--95393869 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 24
95393805 TATTTTATGA
95393815 TTAAATTATTGTTATTAAATATGCT
1 TTAAATTATTGTTATT-AATATGCT
*
95393840 TGAAATTATTG-TATT-ATAT-CTT
1 TTAAATTATTGTTATTAATATGC-T
95393862 TTAAATTA
1 TTAAATTA
95393870 AATTTATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 1 0.04
22 12 0.44
24 4 0.15
25 10 0.37
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (24 bp):
TTAAATTATTGTTATTAATATGCT
Found at i:95394464 original size:29 final size:29
Alignment explanation
Indices: 95394430--95394487 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
95394420 TGTGATATAA
95394430 AAGATTATTGACCACATATGTGGCGTATG
1 AAGATTATTGACCACATATGTGGCGTATG
*
95394459 AAGATTATTGGCCACATATGTGGCGTATG
1 AAGATTATTGACCACATATGTGGCGTATG
95394488 CCCAGATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (29 bp):
AAGATTATTGACCACATATGTGGCGTATG
Found at i:95397172 original size:27 final size:27
Alignment explanation
Indices: 95397134--95397187 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
95397124 TTGGAGATTC
*
95397134 AGTATGACATGATTTGTGATTACTATT
1 AGTATGACATGATTTGTGATTAATATT
95397161 AGTATGACATGATTTGTGATTAATATT
1 AGTATGACATGATTTGTGATTAATATT
95397188 TTGATTTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (27 bp):
AGTATGACATGATTTGTGATTAATATT
Found at i:95399029 original size:11 final size:11
Alignment explanation
Indices: 95399009--95399038 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
95398999 TTTTATCATC
*
95399009 TCTTTCTTTTT
1 TCTTTTTTTTT
95399020 TCTTTTTTTTT
1 TCTTTTTTTTT
95399031 TCTTTTTT
1 TCTTTTTT
95399039 GCCACAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TCTTTTTTTTT
Found at i:95402627 original size:16 final size:16
Alignment explanation
Indices: 95402606--95402638 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
95402596 GTAAAGGGAC
95402606 TCTATGAGAAGGGGCT
1 TCTATGAGAAGGGGCT
95402622 TCTATGAGAAGGGGCT
1 TCTATGAGAAGGGGCT
95402638 T
1 T
95402639 TGTTAGCGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.36, T:0.27
Consensus pattern (16 bp):
TCTATGAGAAGGGGCT
Found at i:95404596 original size:23 final size:24
Alignment explanation
Indices: 95404552--95404597 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
95404542 TGCAATCTTG
*
95404552 GATATGACTTTTGTAATATTAGAA
1 GATATGACTTATGTAATATTAGAA
*
95404576 GATATGA-TTATGTAATCTTAGA
1 GATATGACTTATGTAATATTAGA
95404598 TATCTGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.37, C:0.04, G:0.17, T:0.41
Consensus pattern (24 bp):
GATATGACTTATGTAATATTAGAA
Found at i:95412017 original size:60 final size:60
Alignment explanation
Indices: 95411914--95412106 Score: 233
Period size: 60 Copynumber: 3.2 Consensus size: 60
95411904 GGGGTACAGA
* * * * * *
95411914 CGTGCAAAAAAGGACACCAAAGTGTATACAGGAGCACCAAAGTGCGAACAAGGGCATAGT
1 CGTGCAAACAGGGACACCGAAGTGTATACAGGGGCACAAAAGTGCGAACAAGGGCATAAT
* * ** * *
95411974 CGTGCAAACAGGGACATCGAAGTGTATACAGGGGCGCTGAAGTGTGAACCAGGGCATAAT
1 CGTGCAAACAGGGACACCGAAGTGTATACAGGGGCACAAAAGTGCGAACAAGGGCATAAT
* * * * *
95412034 CGTGCAAATAGGGACACCGAAGTGTATACAGAGGCAAAAAAGTGCGAACAGGGGCACAAT
1 CGTGCAAACAGGGACACCGAAGTGTATACAGGGGCACAAAAGTGCGAACAAGGGCATAAT
95412094 CGTGCAAACAGGG
1 CGTGCAAACAGGG
95412107 GCACTTCTTC
Statistics
Matches: 110, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 110 1.00
ACGTcount: A:0.37, C:0.19, G:0.31, T:0.13
Consensus pattern (60 bp):
CGTGCAAACAGGGACACCGAAGTGTATACAGGGGCACAAAAGTGCGAACAAGGGCATAAT
Found at i:95419087 original size:50 final size:50
Alignment explanation
Indices: 95419012--95419237 Score: 321
Period size: 50 Copynumber: 4.5 Consensus size: 50
95419002 CCATGGCAAC
* *
95419012 AAGTGATAAGTGATATCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
95419062 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATCAAGGACAAAT-A
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
95419111 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TGA
* * *
95419161 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAATGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * ** *
95419211 CAATTGAAAAGTGGTAGCTTCTGCTAC
1 -AAGTGATAAGTAATAGCTTCGGCTAC
95419238 CTGATCAATG
Statistics
Matches: 162, Mismatches: 10, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
48 3 0.02
49 44 0.27
50 90 0.56
51 25 0.15
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:95419140 original size:99 final size:99
Alignment explanation
Indices: 95419012--95419208 Score: 324
Period size: 99 Copynumber: 2.0 Consensus size: 99
95419002 CCATGGCAAC
* *
95419012 AAGTGATAAGTGATATCTTCGGCTACACTTATCTGATCAAGGACAAA-TGAAAGTGATAAGTAAT
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTGAAAGTGATAAGTAAT
95419076 AACTTCGGCTACACTTATCTGATCAAGGACAAATA
65 AACTTCGGCTACACTTATCTGATCAAGGACAAATA
*
95419111 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTGATA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTAATA
* * *
95419176 GCTTCGGCTACACTTATTTGATCAATGACAAAT
66 ACTTCGGCTACACTTATCTGATCAAGGACAAAT
95419209 GACAATTGAA
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
98 3 0.03
99 88 0.97
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (99 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTAATA
ACTTCGGCTACACTTATCTGATCAAGGACAAATA
Found at i:95419253 original size:31 final size:31
Alignment explanation
Indices: 95419215--95419361 Score: 204
Period size: 31 Copynumber: 4.7 Consensus size: 31
95419205 AAATGACAAT
* *
95419215 TGAAAAGTGGTAGCTTCTGCTACCTGATCAA
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
95419246 TGAAAAGTGGTAGCTCCGGCTACTTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
95419277 TGAAAAATGGTTGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* * *
95419308 TGAAAAATGGTAGCTCCGGTTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
95419339 TGAATAGTGGTAGCTTCGGCTAC
1 TGAAAAGTGGTAGCTTCGGCTAC
95419362 AAGTGACAAG
Statistics
Matches: 101, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 101 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Found at i:95419372 original size:7 final size:7
Alignment explanation
Indices: 95419360--95419393 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
95419350 AGCTTCGGCT
95419360 ACAAGTG
1 ACAAGTG
95419367 ACAAGTG
1 ACAAGTG
95419374 ACAAGTG
1 ACAAGTG
95419381 ACAAGTG
1 ACAAGTG
95419388 ACAAGT
1 ACAAGT
95419394 AATTTCCGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.44, C:0.15, G:0.26, T:0.15
Consensus pattern (7 bp):
ACAAGTG
Found at i:95419455 original size:47 final size:47
Alignment explanation
Indices: 95419401--95419533 Score: 230
Period size: 47 Copynumber: 2.8 Consensus size: 47
95419391 AGTAATTTCC
*
95419401 GTATAAGACCATATCTGAGATATGACATCGGTGTGATATATGCTACT
1 GTATAAGACCATATCTGGGATATGACATCGGTGTGATATATGCTACT
95419448 GTATAAGACCATATCTGGGATATGACATCGGTGTGATATATGCTACT
1 GTATAAGACCATATCTGGGATATGACATCGGTGTGATATATGCTACT
* * *
95419495 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATAT
1 GTATAAGACCATATCTGGGATATGACATCGGTGTGATAT
95419534 GTGATTCGTG
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 82 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (47 bp):
GTATAAGACCATATCTGGGATATGACATCGGTGTGATATATGCTACT
Found at i:95419604 original size:42 final size:42
Alignment explanation
Indices: 95419498--95419695 Score: 240
Period size: 42 Copynumber: 4.6 Consensus size: 42
95419488 TGCTACTGTA
* *
95419498 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTG-AT-TCGTG
1 TAAGACCATAGCTGGGCTATGGCATCA-T----TATGTGAATAT-GTG
* *
95419544 TAAGACCATAGCTAGGCTATGGCATCGA-TATATGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAATATGTG
95419586 TAAGACCATAGCTGGGCTATGGCATCATTATGTGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCATTATGTGAATATGTG
*
95419628 TAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGATGTG
1 TAAGACCATAGCTGGGCTATGGCATCATTATGTGAATATGTG
* **
95419670 TAAGACCATAGTTGAACTATGGCATC
1 TAAGACCATAGCTGGGCTATGGCATC
95419696 GAGAAAACGA
Statistics
Matches: 138, Mismatches: 10, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
41 6 0.04
42 107 0.78
43 1 0.01
46 23 0.17
47 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
TAAGACCATAGCTGGGCTATGGCATCATTATGTGAATATGTG
Found at i:95421447 original size:22 final size:23
Alignment explanation
Indices: 95421419--95421462 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
95421409 TGCAATCTTG
95421419 GATATGACT-TGTAATATTAGAA
1 GATATGACTATGTAATATTAGAA
* *
95421441 GATATGATTATGTAATCTTAGA
1 GATATGACTATGTAATATTAGA
95421463 GATTTGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.39, C:0.05, G:0.18, T:0.39
Consensus pattern (23 bp):
GATATGACTATGTAATATTAGAA
Found at i:95421465 original size:22 final size:22
Alignment explanation
Indices: 95421407--95421471 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
95421397 TCTTCAAAGA
* *
95421407 TATGCAATCTT-G-GATATGAC
1 TATGTAATCTTAGAGATATGAT
*
95421427 T-TGTAATATTAGAAGATATGAT
1 TATGTAATCTTAG-AGATATGAT
*
95421449 TATGTAATCTTAGAGATTTGAT
1 TATGTAATCTTAGAGATATGAT
95421471 T
1 T
95421472 TTTTAGATAG
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
19 7 0.19
20 2 0.06
22 17 0.47
23 10 0.28
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.42
Consensus pattern (22 bp):
TATGTAATCTTAGAGATATGAT
Found at i:95421871 original size:19 final size:21
Alignment explanation
Indices: 95421836--95421876 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
95421826 GACAATTAAC
95421836 ACAAAGTAAAAATGAAGATAG
1 ACAAAGTAAAAATGAAGATAG
95421857 ACAAAG-AAAAA-GAAGATAG
1 ACAAAGTAAAAATGAAGATAG
95421876 A
1 A
95421877 AATGCGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 9 0.45
20 5 0.25
21 6 0.30
ACGTcount: A:0.66, C:0.05, G:0.20, T:0.10
Consensus pattern (21 bp):
ACAAAGTAAAAATGAAGATAG
Found at i:95427055 original size:20 final size:20
Alignment explanation
Indices: 95427030--95427081 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
95427020 GAGGCAATGC
*
95427030 ACACGCCTGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
95427050 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
95427070 ACACGCCCGTGT
1 ACACGCCCGTGT
95427082 CCCCTACCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.12, C:0.31, G:0.33, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTTGGG
Found at i:95440593 original size:48 final size:44
Alignment explanation
Indices: 95440428--95440640 Score: 189
Period size: 46 Copynumber: 4.6 Consensus size: 44
95440418 TAAAGTGCTA
* * *
95440428 ATGCCATGTCACAGACATAGTCTTACACTGACACATTTCATAGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTGACTCATATCAT-GCCG
*
95440474 ATG-CATGTCCCAGACATGTCTTACACTGACTTACATATCGAGGCCG
1 ATGCCATGTCCCAGACATGTCTTACACTGAC-T-CATATC-ATGCCG
* * *
95440520 AT-ACATGTCCCAGACACGTCTTACACTGGAACTCATCTCAATGCCG
1 ATGCCATGTCCCAGACATGTCTTACACT-G-ACTCATATC-ATGCCG
* ** * *
95440566 ATGCCATATCCCAGACATGGTCTTACACTGGTTCTTATAATGTGGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTGACTCATATCA--T-GCCG
95440614 ATG-CATGTCCCAGACATGTCTTACACT
1 ATGCCATGTCCCAGACATGTCTTACACT
95440641 AGCTCACACA
Statistics
Matches: 139, Mismatches: 17, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
44 13 0.09
45 14 0.10
46 63 0.45
47 30 0.22
48 19 0.14
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (44 bp):
ATGCCATGTCCCAGACATGTCTTACACTGACTCATATCATGCCG
Found at i:95440613 original size:94 final size:90
Alignment explanation
Indices: 95440432--95440640 Score: 235
Period size: 94 Copynumber: 2.3 Consensus size: 90
95440422 GTGCTAATGC
* * *
95440432 CATGTCACAGACATAGTCTTACACTGACACATTTCATAGCCGATGCATGTCCCAGACATGTCTTA
1 CATGTCCCAGACA-AGTCTTACACTGACACATCTCATAGCCGATGCATATCCCAGACATGTCTTA
95440497 CACTGACTTACATATCGAGGCCGATA
65 CACTGACTTACATATCGAGGCCGATA
* *
95440523 CATGTCCCAGACACGTCTTACACTGGAACTCATCTCA-ATGCCGATGCCATATCCCAGACATGGT
1 CATGTCCCAGACAAGTCTTACACT-G-ACACATCTCATA-GCCGATG-CATATCCCAGACAT-GT
* * * *
95440587 CTTACACTGGTTCTTATA-AT-GTGGCCGATG
61 CTTACACT-G-ACTTACATATCGAGGCCGATA
*
95440617 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACAAGTCTTACACT
95440641 AGCTCACACA
Statistics
Matches: 101, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
90 10 0.10
91 14 0.14
92 15 0.15
93 13 0.13
94 41 0.41
95 3 0.03
96 5 0.05
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (90 bp):
CATGTCCCAGACAAGTCTTACACTGACACATCTCATAGCCGATGCATATCCCAGACATGTCTTAC
ACTGACTTACATATCGAGGCCGATA
Found at i:95442017 original size:43 final size:43
Alignment explanation
Indices: 95441953--95442057 Score: 156
Period size: 43 Copynumber: 2.4 Consensus size: 43
95441943 TGAAATAGGT
* *
95441953 CTACTCACACGAGTTGTGGGTAGGGATGTTATGCTACACAATG
1 CTACTCACACGAGCTGTGGGTAGGGATGTTAGGCTACACAATG
* **
95441996 CTGCTCACACGAGCTGTGGGTAGGGATGTTAGGCTACATGATG
1 CTACTCACACGAGCTGTGGGTAGGGATGTTAGGCTACACAATG
*
95442039 CTACTCATACGAGCTGTGG
1 CTACTCACACGAGCTGTGG
95442058 AGAATCCGCA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (43 bp):
CTACTCACACGAGCTGTGGGTAGGGATGTTAGGCTACACAATG
Found at i:95443076 original size:19 final size:19
Alignment explanation
Indices: 95443052--95443090 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
95443042 CAAAACAAAG
95443052 AAAGGAAGAAGATCATAGC
1 AAAGGAAGAAGATCATAGC
95443071 AAAGGAAGAAGATCATAGC
1 AAAGGAAGAAGATCATAGC
95443090 A
1 A
95443091 TTTTGCCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.10, G:0.26, T:0.10
Consensus pattern (19 bp):
AAAGGAAGAAGATCATAGC
Found at i:95444105 original size:19 final size:19
Alignment explanation
Indices: 95444078--95444114 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
95444068 ATTACAAAAA
95444078 AAAAATCAAAATAATTTTC
1 AAAAATCAAAATAATTTTC
*
95444097 AAAATTCAAAATAATTTT
1 AAAAATCAAAATAATTTT
95444115 TAAATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATCAAAATAATTTTC
Found at i:95444170 original size:10 final size:10
Alignment explanation
Indices: 95444157--95444196 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
95444147 TTATAATTAA
*
95444157 AAAAAATTAT
1 AAAAAAGTAT
95444167 -AAAAAGTAT
1 AAAAAAGTAT
95444176 AAAAAAGTAT
1 AAAAAAGTAT
*
95444186 AAAAAAATAT
1 AAAAAAGTAT
95444196 A
1 A
95444197 CATTAAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
9 8 0.30
10 19 0.70
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (10 bp):
AAAAAAGTAT
Found at i:95446962 original size:20 final size:20
Alignment explanation
Indices: 95446939--95446979 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
95446929 TAATGTATAT
95446939 TTTGAGAAAATAGAAAAACA
1 TTTGAGAAAATAGAAAAACA
95446959 TTTGAGAAAATAGAAAAACA
1 TTTGAGAAAATAGAAAAACA
95446979 T
1 T
95446980 GTACTGAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.59, C:0.05, G:0.15, T:0.22
Consensus pattern (20 bp):
TTTGAGAAAATAGAAAAACA
Found at i:95451568 original size:19 final size:19
Alignment explanation
Indices: 95451489--95451568 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 19
95451479 ATGCGCCAAA
*
95451489 ATGCACCTT-GTGTGCTAGT
1 ATGCA-CTTCGTGTGCCAGT
* * *
95451508 AAGAACTTAGTGTGCCAGT
1 ATGCACTTCGTGTGCCAGT
* * * *
95451527 ATACGCTTCGTGTGTCAGG
1 ATGCACTTCGTGTGCCAGT
*
95451546 ATGCACTTCGTGTGCCAAT
1 ATGCACTTCGTGTGCCAGT
95451565 ATGC
1 ATGC
95451569 TTTTTGTGCA
Statistics
Matches: 45, Mismatches: 15, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
18 3 0.07
19 42 0.93
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.31
Consensus pattern (19 bp):
ATGCACTTCGTGTGCCAGT
Found at i:95454106 original size:42 final size:42
Alignment explanation
Indices: 95454037--95454153 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 42
95454027 CATAAGCTCG
* *
95454037 TACAATGCCAACT-TCCCAGAC-GTGGTCTTACATGTAATCAAA
1 TACAATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAA
*
95454079 TATCAATGCCACTGT-CCAGACAGGGTCTTACACGAAATCATA
1 TA-CAATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAA
* * * *
95454121 TACGATGTCAATGTCCCAGACATGGTCTTACAC
1 TACAATGCCACTGTCCCAGACAGGGTCTTACAC
95454154 ATAAATCACA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
41 9 0.14
42 46 0.72
43 9 0.14
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (42 bp):
TACAATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAA
Found at i:95454736 original size:23 final size:23
Alignment explanation
Indices: 95454706--95454751 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
95454696 AAATCTCATC
*
95454706 AAACCCATATTAGGCTGAATTTA
1 AAACCCATATTAGGCCGAATTTA
95454729 AAACCCATATTAGGCCGAATTTA
1 AAACCCATATTAGGCCGAATTTA
95454752 CCTGAGGTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (23 bp):
AAACCCATATTAGGCCGAATTTA
Found at i:95457767 original size:27 final size:27
Alignment explanation
Indices: 95457737--95457823 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 27
95457727 ATGACGAAGT
*
95457737 CACCAGATACAGATATTGTGGTAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
95457764 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
95457791 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
95457818 CACCAG
1 CACCAG
95457824 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.15
27 45 0.82
28 2 0.04
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:95459449 original size:26 final size:26
Alignment explanation
Indices: 95459419--95459500 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
95459409 TGAAATGCCC
95459419 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
95459445 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
95459471 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
95459497 ATCA
1 ATCA
95459501 ATTTTTATAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:95465631 original size:27 final size:27
Alignment explanation
Indices: 95465601--95465685 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 27
95465591 GACGAAGTCT
95465601 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATATTGTGGCAGAGCCA
*
95465628 CCAG-GACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATAT-TGTGGCAGAGCCA
* *
95465655 CTAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGAT-ATTGTGGCAGAGCCA
95465682 CCAG
1 CCAG
95465686 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
26 8 0.16
27 40 0.80
28 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (27 bp):
CCAGATACAGATATTGTGGCAGAGCCA
Found at i:95467312 original size:26 final size:25
Alignment explanation
Indices: 95467282--95467363 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 25
95467272 TGAAATGCCC
*
95467282 ATCATAGAACATTTACCTAACCCATT
1 ATCAT-GAATATTTACCTAACCCATT
95467308 ATCATGGAATATTTACCTAACCCATT
1 ATCAT-GAATATTTACCTAACCCATT
95467334 ATCATGTAATATTTACCTAACCCATT
1 ATCATG-AATATTTACCTAACCCATT
95467360 ATCA
1 ATCA
95467364 ATTTTTATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 1 0.02
26 52 0.98
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCATGAATATTTACCTAACCCATT
Found at i:95468385 original size:44 final size:45
Alignment explanation
Indices: 95468176--95468534 Score: 180
Period size: 47 Copynumber: 7.6 Consensus size: 45
95468166 GTATAATACG
* *
95468176 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-CATCTATCAAG-TC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTACATC--TCGAGCTC
* * **
95468223 GATGCCATGTCCTAAACATGGTCTTACACTGACTATCGAAATCGAGGCT-
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTA-C-ATCTCGA-GCTC
* * * * *
95468272 GACGTCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATGC-A
1 GATG-CATGTCCCAGACAT-GTCTTACACT-G-ACT-ACATCTCGA-GCTC
*
95468322 GATGCCATGTCCCAAACATGGT-TTACACTGAC-ACATCTCGTAGCT-
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTACATCTCG-AGCTC
* *
95468367 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTGAC-TACATCTCGAGCTC
* * * * * **
95468413 GATGCATGTCCCAGACATATCTTACA-TTAGCTCTCGTCTCAATATC
1 GATGCATGTCCCAGACATGTCTTACACTGA-CT-ACATCTCGAGCTC
* * * *
95468459 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCT-
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACT-ACAT-CTCG-AGCTC
*
95468507 GATGCATGTCCCAAACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
95468535 AGCACACAAA
Statistics
Matches: 249, Mismatches: 41, Indels: 45
0.74 0.12 0.13
Matches are distributed among these distances:
43 2 0.01
44 22 0.09
45 17 0.07
46 57 0.23
47 59 0.24
48 21 0.08
49 38 0.15
50 29 0.12
51 3 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTACATCTCGAGCTC
Found at i:95468421 original size:46 final size:48
Alignment explanation
Indices: 95468176--95468492 Score: 241
Period size: 46 Copynumber: 6.7 Consensus size: 48
95468166 GTATAATACG
*
95468176 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCTATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATC--TCGAGGTC
* * * **
95468223 GATGCCATGTCCTAAACATGGTCTTACACTGAC-TATCGAAATCGAGG-C
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCGAGGTC
* * * * * *
95468271 TGACGTCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATG-C
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTCGAGGTC
* * *
95468321 AGATGCCATGTCCCAAACATGGT-TTACACTGAC--ACATCTCGTAGCT-
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AGGTC
95468367 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGTC
* * * * * **
95468413 GATG-CATGTCCCAGACAT-ATCTTACATTAGCTCT-CGTCTCAATATC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGTC
95468459 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
95468493 CTCATAATGT
Statistics
Matches: 215, Mismatches: 38, Indels: 33
0.75 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 22 0.10
45 13 0.06
46 50 0.23
47 46 0.21
48 14 0.07
49 38 0.18
50 27 0.13
51 2 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGTC
Found at i:95468511 original size:94 final size:92
Alignment explanation
Indices: 95468277--95468537 Score: 232
Period size: 94 Copynumber: 2.8 Consensus size: 92
95468267 AGGCTGACGT
* * *
95468277 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATG-CAGATGCCATGTCCCAAACAT
1 CATGTCCCAGACAT-GTCTTACACTGGCT-T-ACATATCGAGGTC-GATG-CATGTCCCAAACAT
* * * * * *
95468341 GGT-TTACACT-G-ACACATCTC-GTAGCTGATG
61 -ATCTTACACTAGCTCTCGTCTCAATATC-GATG
* *
95468371 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGTCGATGCATGTCCCAGACATATCTT
1 CATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGTCGATGCATGTCCCAAACATATCTT
*
95468436 ACATTAGCTCTCGTCTCAATATCGATG
66 ACACTAGCTCTCGTCTCAATATCGATG
*
95468463 CCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGG-CTGATGCATGTCCCAAACAT
1 -CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGTC-GATGCATGTCCCAAACAT
*
95468525 GTCTTACACTAGC
61 ATCTTACACTAGC
95468538 ACACAAATAA
Statistics
Matches: 140, Mismatches: 17, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
89 1 0.01
90 19 0.14
91 13 0.09
92 12 0.09
93 31 0.22
94 62 0.44
95 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGTCGATGCATGTCCCAAACATATCTT
ACACTAGCTCTCGTCTCAATATCGATG
Found at i:95474670 original size:27 final size:29
Alignment explanation
Indices: 95474617--95474670 Score: 67
Period size: 27 Copynumber: 1.9 Consensus size: 29
95474607 AACCATATCT
* * *
95474617 TATTCATTTATTCATGTTTCATTTACACG
1 TATTCATATATTCATGTTCCATATACACG
95474646 TATTCATAT-TTCAT-TTCCATATACA
1 TATTCATATATTCATGTTCCATATACA
95474671 TCACATAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 9 0.41
28 5 0.23
29 8 0.36
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.50
Consensus pattern (29 bp):
TATTCATATATTCATGTTCCATATACACG
Found at i:95474916 original size:43 final size:44
Alignment explanation
Indices: 95474836--95474997 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 44
95474826 TAAGCTCATA
* ** *
95474836 CAATGCCAATGTCCTAGAC-GTGGTCTTACTTGTAATCAAATAT
1 CAATGCCAATGTCCCAGACAGTGGTCTTACACGAAATCAAATAT
* *
95474879 CAATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCATATA-
1 CAATGCCAATGTCCCAGACAGTGGTCTTACACGAAATCAAATAT
* * * * *
95474921 CGATGCCAATATCCCGGACA-TGATCTTACACGTAAAT-AACAAAT
1 CAATGCCAATGTCCCAGACAGTGGTCTTACACG-AAATCAA-ATAT
* * *
95474965 CGATGCCAACGTCCCAGA-TGTGGTCTTACACGA
1 CAATGCCAATGTCCCAGACAGTGGTCTTACACGA
95474998 TAACACATAT
Statistics
Matches: 95, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
42 27 0.28
43 41 0.43
44 27 0.28
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (44 bp):
CAATGCCAATGTCCCAGACAGTGGTCTTACACGAAATCAAATAT
Found at i:95475598 original size:16 final size:16
Alignment explanation
Indices: 95475577--95475617 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
95475567 ATTTTGACCC
*
95475577 CTCAATTTTCAAATTT
1 CTCAATTTACAAATTT
95475593 CTCAATTTACAAATTT
1 CTCAATTTACAAATTT
95475609 CTCAATTTA
1 CTCAATTTA
95475618 GTCCTTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.46
Consensus pattern (16 bp):
CTCAATTTACAAATTT
Found at i:95476518 original size:15 final size:15
Alignment explanation
Indices: 95476498--95476527 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
95476488 TTCACTATTA
95476498 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
95476513 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
95476528 GCACGCATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.07, T:0.73
Consensus pattern (15 bp):
TGTCTTTTATATTTT
Found at i:95476527 original size:14 final size:14
Alignment explanation
Indices: 95476493--95476528 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
95476483 CACATTTCAC
*
95476493 TATTATGTCTTTTA
1 TATTTTGTCTTTTA
95476507 TATTTTTGTCTTTTA
1 TA-TTTTGTCTTTTA
95476522 TATTTTG
1 TATTTTG
95476529 CACGCATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.17, C:0.06, G:0.08, T:0.69
Consensus pattern (14 bp):
TATTTTGTCTTTTA
Found at i:95484312 original size:13 final size:13
Alignment explanation
Indices: 95484294--95484322 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
95484284 GGTTGTTTAT
95484294 TAAACTAATTAAC
1 TAAACTAATTAAC
95484307 TAAACTAATTAAC
1 TAAACTAATTAAC
95484320 TAA
1 TAA
95484323 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:95496087 original size:21 final size:22
Alignment explanation
Indices: 95496032--95496093 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
95496022 GCAACCATGA
95496032 AGCAGCCCCATACCTCCACTAC
1 AGCAGCCCCATACCTCCACTAC
* *
95496054 AGCGGCCCCATACCCCCACTAC
1 AGCAGCCCCATACCTCCACTAC
*
95496076 AGCAG-TCCATACCTCCAC
1 AGCAGCCCCATACCTCCAC
95496094 AGCCCTCGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
21 11 0.31
22 24 0.69
ACGTcount: A:0.26, C:0.50, G:0.11, T:0.13
Consensus pattern (22 bp):
AGCAGCCCCATACCTCCACTAC
Found at i:95498295 original size:69 final size:69
Alignment explanation
Indices: 95498128--95498295 Score: 203
Period size: 70 Copynumber: 2.4 Consensus size: 69
95498118 GAAAAACAAC
* ** *
95498128 ACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTTTTTAAA
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTGTTTT-AA
95498193 AATCA
65 AATCA
** * *
95498198 ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTT-A
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-TGTTTTAA
**
95498262 AATTG
65 AATCA
* *
95498267 ACTCATATTGCGAAAGGTGAGTTAAGCCT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCT
95498296 TTTAATTTTT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 31 0.36
70 49 0.58
71 5 0.06
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (69 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTGTTTTAAA
ATCA
Found at i:95498435 original size:75 final size:75
Alignment explanation
Indices: 95498312--95498649 Score: 422
Period size: 75 Copynumber: 4.5 Consensus size: 75
95498302 TTTTTTTTTC
*
95498312 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA-TTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
95498376 GTTGTTAAAAA
66 GTT-TTAAAAA
**
95498387 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
95498452 G-TTT---CA
66 GTTTTAAAAA
* * ** * * *
95498458 AAATTCAACTTA-ATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
95498522 GTTTTCAAAAA
66 GTTTT-AAAAA
* * *
95498533 AAAATCAACTTATATTGCG-GAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
95498596 TCTGTTTTTTAAAAA
63 TCTG--TTTTAAAAA
*
95498611 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
95498650 ATTACACTAC
Statistics
Matches: 231, Mismatches: 18, Indels: 23
0.85 0.07 0.08
Matches are distributed among these distances:
70 50 0.22
71 14 0.06
74 3 0.01
75 85 0.37
76 11 0.05
77 24 0.10
78 23 0.10
79 20 0.09
80 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAA
Found at i:95498500 original size:70 final size:72
Alignment explanation
Indices: 95498307--95498765 Score: 378
Period size: 75 Copynumber: 6.3 Consensus size: 72
95498297 TTAATTTTTT
* **
95498307 TTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
95498371 A-TTCTG
66 ATTTCTG
*
95498377 TTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
1 TT-TT---CAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
95498442 TTCAATTTCTG
62 TTCAATTTCTG
* * * * *
95498453 -TTTCAAAATTCAACTTA-ATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
95498516 ATTTCTG
66 ATTTCTG
* ** *
95498523 TTTTCAAAAAAAAATCAACTTATATTGCG-GAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGT
1 TTTTC----AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGT
*
95498586 ATTTTCAATTTCTG
59 AATTTCAATTTCTG
* ** * * * *
95498600 TTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACTACTGTGG
1 --TTTT---CAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG--GACAC-GCTGAGG
95498665 T-ATTT---TTT-T-
58 TAATTTCAATTTCTG
* ** *
95498674 TTTT------TCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
95498733 ATTTCTG
66 ATTTCTG
*
95498740 TTTGTCAAGAATCAACTCATATTGCG
1 TTT-TCAAAAATCAACTCATATTGCG
95498766 GAGGTGGGTT
Statistics
Matches: 320, Mismatches: 31, Indels: 73
0.75 0.07 0.17
Matches are distributed among these distances:
60 5 0.02
61 8 0.03
63 33 0.10
64 3 0.01
65 1 0.00
66 3 0.01
67 1 0.00
70 52 0.16
71 17 0.05
72 4 0.01
73 14 0.04
74 3 0.01
75 86 0.27
76 14 0.04
77 24 0.08
78 19 0.06
79 26 0.08
80 7 0.02
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (72 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
ATTTCTG
Found at i:95498563 original size:145 final size:145
Alignment explanation
Indices: 95498308--95498602 Score: 400
Period size: 145 Copynumber: 2.0 Consensus size: 145
95498298 TAATTTTTTT
* ** *
95498308 TTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 TTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
95498373 TCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG-ACACGCTGAG
66 TCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGTACACGCTGAG
95498437 GTAATTTCAATTTCTG
130 GTAATTTCAATTTCTG
* * *
95498453 TTTCAAAATTCAACTTA-ATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA
1 TTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
* ** *
95498517 TTTCTGTT-TTCAAAAAAAAATCAACTTATATTGCG-GAGGTGAGTTGAGCCTCGGTTCACATGC
65 -TTCTGTTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGG-T-ACACGC
*
95498580 TGAGGTATTTTCAATTTCTG
126 TGAGGTAATTTCAATTTCTG
95498600 TTT
1 TTT
95498603 TTTAAAAAAA
Statistics
Matches: 132, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
144 2 0.02
145 66 0.50
146 37 0.28
147 27 0.20
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (145 bp):
TTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
TCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGTACACGCTGAGG
TAATTTCAATTTCTG
Found at i:95499100 original size:87 final size:88
Alignment explanation
Indices: 95498878--95499120 Score: 251
Period size: 87 Copynumber: 2.8 Consensus size: 88
95498868 TTTAATTTCA
** * * * *
95498878 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCCGAGGTATTTTCAATTAAGC-CT
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA--CCGAGGTAATTTCAATT--TCTAT
*
95498942 TTTGATT-TCT-TGTTTTTCAAAAAATC
62 TTTCATTAT-TATGTTTTTCAAAAAATC
** * * * *
95498968 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCCATTTCTATTTTC
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACCGAGGTAATTTCAATTTCTATTTTC
* *
95499033 ATTATTATGTTTTTGAAAGAATC
66 ATTATTATGTTTTTCAAAAAATC
** *
95499056 -ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTTTC
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACCGAGGTAATTTCAATTTCTATTTTC
95499120 A
66 A
95499121 AAATTCAACT
Statistics
Matches: 134, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
86 1 0.01
87 64 0.48
88 31 0.23
90 38 0.28
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (88 bp):
AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACCGAGGTAATTTCAATTTCTATTTTC
ATTATTATGTTTTTCAAAAAATC
Found at i:95499173 original size:72 final size:72
Alignment explanation
Indices: 95499043--95499796 Score: 571
Period size: 72 Copynumber: 10.1 Consensus size: 72
95499033 ATTATTATGT
* * *
95499043 TTTTGAAAGAATC-ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTC
1 TTTTCAAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
95499107 AATTTCTG
65 AATTTCTG
* * *
95499115 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
95499180 ATTTCTG
66 ATTTCTG
* * * * *
95499187 CTTTTC--AATTCAACTCATA-TGTCGAGAAATGAGTTGAGCCTCAGGACAAGCTGAGGTAATTT
1 -TTTTCAAAAATCAACTCATATTG-CGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
95499249 CAATTTCTG
64 CAATTTCTG
* * * *
95499258 TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTT
1 TTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
*
95499323 CAATTTCTAC
64 CAATTTCT-G
*
95499333 TTTTCAAGAAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT-AT
1 TTTTC----AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAAT
95499396 TTCAATTCCTGTTCAATTATG
62 TTCAA----T-TTC-----TG
* * *
95499417 TTTTTCAAAAATCAACTC-TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 -TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
*
95499481 AATTTCTAT
65 AATTTCT-G
* ** * ** *
95499490 TTTTCAAAAATCAACTCATATTGCGAGAGGGGTGA-TTGAGCCTCGGGGCACGCCGAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGA--AGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
* *
95499554 CAAATTCTA
64 CAATTTCTG
* ** *
95499563 CTTTCAAAAAAATCAACTCATATTGCGA-AAGTGAGTTGAGCCT-TGGCTCACGTGTTGA-GTCA
1 TTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAG-ACAC--GTTGAGGT-A
*
95499625 CTTTCAATTCTGTTTTTATGTCTG
60 ATTTCAA---------T-T-TCTG
* * ** * * *
95499649 TTTTC-TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
*
95499713 ATTACTG
66 ATTTCTG
* * * * * * *
95499720 TTTGGCAAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTC-AGACATGCTGAGGTATTTTT
1 TTT-TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTA-ATTT
*
95499784 CCATTTCTG
64 CAATTTCTG
95499793 TTTT
1 TTTT
95499797 TCAATTTATG
Statistics
Matches: 571, Mismatches: 59, Indels: 104
0.78 0.08 0.14
Matches are distributed among these distances:
70 6 0.01
71 67 0.12
72 102 0.18
73 79 0.14
74 88 0.15
75 48 0.08
76 44 0.08
77 11 0.02
78 1 0.00
79 1 0.00
80 3 0.01
81 45 0.08
82 22 0.04
83 21 0.04
84 17 0.03
85 9 0.02
86 7 0.01
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (72 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:95499531 original size:231 final size:224
Alignment explanation
Indices: 95499052--95499800 Score: 782
Period size: 231 Copynumber: 3.3 Consensus size: 224
95499042 TTTTTGAAAG
** * * *
95499052 AATC-ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCT-G
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTCTAC
* * *
95499115 TTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
66 TTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTACTTT
* * **
95499178 CAA---T-TTC---TGCTTTTCAATTCAACTC-ATATGTCGAGAAATGAGTTGAGCCTCAGGACA
131 CAATTCTGTTCTTATGTTTTTCAAATCAACTCTAT-TG-CGAGAGGTGAGTTGAGCCTCAGGACA
* *
95499235 AGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
194 CGCTGAGGTAATTTCAATTTCTTTTGTC--AAA
*
95499268 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTAC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTCTAC
*
95499333 TTTTCAAGAAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA-T
66 TTTTC-A-AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTACT
95499396 TTCAATTCCTGTTCAATTATGTTTTTCAAAAATCAACTCTATTGCGAGAGGTGAGTTGAGCCTCA
129 TTCAATT-CTGTTC--TTATGTTTTTC--AAATCAACTCTATTGCGAGAGGTGAGTTGAGCCTCA
*
95499461 GGACACGCTGAGGTAATTTCAATTTCTATTTTTCAAA
189 GGACACGCTGAGGTAATTTCAATTTCT-TTTGTCAAA
** * * * *
95499498 AATCAACTCATATTGCGAGAGGGGTGA-TTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCT
1 AATCAACTCATATTGCGAGA--GGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTCT
** *
95499562 AC-TTTCAAAAAAATCAACTCATATTGCGA-AAGTGAGTTGAGCCT-TGGCTCACGTGTTGA-GT
64 ACTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAG-ACAC--GTTGAGGT
*
95499623 CACTTTCAATTCTGTTTTTATGTCTGTTTTCTAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
126 -ACTTTCAATTCTGTTCTTATG--T-TTTTC-AAATCAACTC-TATTGCGAGAGGTGAGTTGAGC
* * * * *
95499688 CTCGGGGCACGCTGAGGTATTTTCAATTACTGTTTGGCAAA
185 CTCAGGACACGCTGAGGTAATTTCAATTTCT-TTTGTCAAA
* * ** * *
95499729 AACCAACTCATACTGCGAGAGGTGAGTTGAGCCTC-AGACATGCTGAGGTATTTTTCCATTTCTG
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTA-TTTTCAATTTCTA
*
95499793 TTTTTCAA
65 CTTTTCAA
95499801 TTTATGTTTT
Statistics
Matches: 454, Mismatches: 44, Indels: 55
0.82 0.08 0.10
Matches are distributed among these distances:
216 4 0.01
217 55 0.12
218 5 0.01
220 6 0.01
221 44 0.10
222 6 0.01
224 1 0.00
225 3 0.01
227 1 0.00
228 30 0.07
229 32 0.07
230 75 0.17
231 170 0.37
232 20 0.04
233 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (224 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTCTAC
TTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTACTTT
CAATTCTGTTCTTATGTTTTTCAAATCAACTCTATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTAATTTCAATTTCTTTTGTCAAA
Found at i:95499585 original size:75 final size:73
Alignment explanation
Indices: 95499052--95499778 Score: 416
Period size: 74 Copynumber: 9.7 Consensus size: 73
95499042 TTTTTGAAAG
** * *** * *
95499052 AATC-ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAATTCTAT
95499116 -TTTCAAA
66 CTTTCAAA
* ** * ** * * *
95499123 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT-G
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAATTCTAT
95499187 CTTTTC--A
66 C-TTTCAAA
* ** * * * *
95499194 ATTCAACTCATA-TGTCGAGAAATGAGTTGAGCCTCAGGACAAGCTGAGGTAATTTCAATTTCTG
1 AATCAACTCATATTG-CGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAATTCTA
*
95499258 T-TGTCAAAAA
65 TCTTTC--AAA
* *** * *
95499268 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTA-
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAATTCTAT
95499332 CTTTTCAAGAAAA
66 C-TTTC----AAA
* ** *
95499345 AATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTCCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAA-----AT
*
95499408 TCAATTATGTTTTTCAAA
61 TC---TA--TCTTTCAAA
* *
95499426 AATCAACTC-TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTAT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAATTCTAT
*
95499490 TTTTCAAA
66 CTTTCAAA
* * *
95499498 AATCAACTCATATTGCGAGAGGGGTGA-TTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCT
1 AATCAACTCATATTGCGAGA--GGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAATTCT
95499562 A-CTTTCAAAAA
64 ATCTTTC--AAA
* * * * * *
95499573 AATCAACTCATATTGCGA-AAGTGAGTTGAGCCT-TGGCTCACG-TGTTGAGTCACTTTC-AATT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCCG-AG-GT-AATTTCAAATT
*
95499634 CTGTTTTTATGTCTGTTTTC-TA
62 C------TA--TC---TTTCAAA
* * * * *
95499656 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC-AATTACTG
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAATT-CTA
*
95499720 T-TTGGCAAA
65 TCTT-TCAAA
* * * *
95499729 AACCAACTCATACTGCGAGAGGTGAGTTGAGCCTCA-GACATGCTGAGGTA
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTA
95499779 TTTTTCCATT
Statistics
Matches: 547, Mismatches: 54, Indels: 109
0.77 0.08 0.15
Matches are distributed among these distances:
70 5 0.01
71 62 0.11
72 94 0.17
73 65 0.12
74 96 0.18
75 43 0.08
76 44 0.08
77 12 0.02
80 5 0.01
81 45 0.08
82 20 0.04
83 25 0.05
84 19 0.03
85 8 0.01
86 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (73 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAATTCTAT
CTTTCAAA
Found at i:95499705 original size:157 final size:159
Alignment explanation
Indices: 95499490--95499875 Score: 421
Period size: 156 Copynumber: 2.4 Consensus size: 159
95499480 CAATTTCTAT
*
95499490 TTTTCAAAAATCAACTCATATTGCGAGAGGGGTGA-TTGAGCCTCGGGGCACGCCGAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGA--GGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
* * * *
95499554 CAAATT-CTACTTTCAAAAAAATCAACTCATATTGCGA-AAGTGAGTTGAGCCTTGGCTCACGTG
64 CAAATTACT-CTTTCAAAAAAACCAACTCATACTGCGAGAAGTGAGTTGAGCC-T--CACACATG
* *
95499617 TTGA-GTCA-CTTT-CAATTCTGTTTTT-ATGTCTG
125 CTGAGGT-ATCTTTCCAATTCTGTTTTTAATGTATG
*
95499649 TTTTC-TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC-
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCA
* *** * *
95499712 AATTACTGTTTGGCAAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGACATGCTGAGG
66 AATTACTCTTTCAAAAAAACCAACTCATACTGCGAGAAGTGAGTTGAGCCTCACACATGCTGAGG
* * *
95499777 TATTTTTCCATTTCTGTTTTTCAATTTATG
131 TATCTTTCCAATTCTGTTTTT-AATGTATG
* * * *
95499807 TTTTCAAAAATCAATTCATATTGCTAAAGGTGAGTTGAGCCTCGGCTCGCACCGCTGAGGTATTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GGCA-CGCTGAGGTATTT
95499872 TCAA
63 TCAA
95499876 TTTTTTGTTT
Statistics
Matches: 192, Mismatches: 22, Indels: 22
0.81 0.09 0.09
Matches are distributed among these distances:
154 9 0.05
155 5 0.03
156 44 0.23
157 44 0.23
158 31 0.16
159 40 0.21
161 3 0.02
162 15 0.08
163 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (159 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCA
AATTACTCTTTCAAAAAAACCAACTCATACTGCGAGAAGTGAGTTGAGCCTCACACATGCTGAGG
TATCTTTCCAATTCTGTTTTTAATGTATG
Found at i:95500060 original size:87 final size:85
Alignment explanation
Indices: 95499899--95500060 Score: 193
Period size: 87 Copynumber: 1.9 Consensus size: 85
95499889 CAATTTATGC
* * * * *
95499899 TTTTCAAATTCTACTTTCCAAAAATCAACTCATATGCGAGGTGAGTTGAGCCTCGGGTCACATGT
1 TTTTCAAATTCAACTTTCAAAAAAACAACTCATATGCGAGGTGAGTTGAGCCTCAGCTCACATGT
*
95499964 CGAGGTATTTTCAAATCTGT
66 CGAGCTATTTTCAAATCTGT
* * *
95499984 TTTTCAAATT-AAGTTTCAAAAAAACAACTCATATGGCGAGAGGTGAGTTGAGCCTTAGCTCACG
1 TTTTCAAATTCAACTTTCAAAAAAACAACTCATAT-GC--GAGGTGAGTTGAGCCTCAGCTCACA
95500048 TG-CTGAGCTATTT
63 TGTC-GAGCTATTT
95500061 CTGTTTTAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
84 20 0.31
85 12 0.19
86 1 0.02
87 31 0.48
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (85 bp):
TTTTCAAATTCAACTTTCAAAAAAACAACTCATATGCGAGGTGAGTTGAGCCTCAGCTCACATGT
CGAGCTATTTTCAAATCTGT
Found at i:95502902 original size:16 final size:16
Alignment explanation
Indices: 95502881--95502911 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
95502871 AAGAGAAGGT
95502881 CGAGAATCAAAGCAAG
1 CGAGAATCAAAGCAAG
95502897 CGAGAATCAAAGCAA
1 CGAGAATCAAAGCAA
95502912 TGAACGCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.19, G:0.23, T:0.06
Consensus pattern (16 bp):
CGAGAATCAAAGCAAG
Found at i:95503291 original size:70 final size:70
Alignment explanation
Indices: 95503170--95503344 Score: 228
Period size: 70 Copynumber: 2.5 Consensus size: 70
95503160 CTTTCCAAGG
* **
95503170 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-T
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
*
95503234 TTTTT
66 GTTTT
** * *
95503239 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
95503304 TGTTTT
65 TGTTTT
** *
95503310 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
95503345 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
69 32 0.34
70 56 0.60
71 5 0.05
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:95503488 original size:76 final size:75
Alignment explanation
Indices: 95503362--95503702 Score: 456
Period size: 72 Copynumber: 4.5 Consensus size: 75
95503352 TTTGTTTTTC
*
95503362 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
95503427 GTTGTTAAAAA
66 GTT-TTAAAAA
**
95503438 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
95503503 GTTTT---CA
66 GTTTTAAAAA
* * ** * * *
95503510 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
95503575 GTTTTCAAAA
66 GTTTTAAAAA
* * *
95503585 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
95503649 TCTGTTTTTAAAAAA
63 TCTG-TTTT-AAAAA
*
95503664 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
95503703 ATTACACACT
Statistics
Matches: 237, Mismatches: 19, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
72 66 0.28
74 1 0.00
75 37 0.16
76 65 0.27
77 24 0.10
78 4 0.02
79 39 0.16
80 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAA
Found at i:95503787 original size:214 final size:215
Alignment explanation
Indices: 95503348--95504588 Score: 818
Period size: 233 Copynumber: 5.6 Consensus size: 215
95503338 TAAGCCTTTT
* * *
95503348 AATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
95503412 GTAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
66 GTAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
*
95503477 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGA
131 GACACACTGAGGTAATTT--ATTTCTGTTTTC-AAATT--AC-TATATTGCGAGAAATGAGTTGA
* *
95503542 GCCTCAAGACACGTTGAGGTATTTTC
190 GCCTCAAGACACGATGAGGTAATTTC
* *
95503568 AATTTCTGTTT-TCAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAT
1 AATTTCTGTTTGTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACAC
* * **
95503631 GCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
60 GCTGAGGTAATTTCAATTTCTGTTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGA
* * * **
95503696 GCTTCAGATTACACACTGTGGT-A-TT-TTT-T-TTTTC-AATT-C-ATATTGCGAGAGGTGAGT
124 GCCTCAG--GACACACTGAGGTAATTTATTTCTGTTTTCAAATTACTATATTGCGAGAAATGAGT
*
95503753 TGAGCCTCAGGACACGATGAGGTAATTTC
187 TGAGCCTCAAGACACGATGAGGTAATTTC
* * *
95503782 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGT--G--G-G--T--TGA-AC-CT--T
1 AATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * * * * ** *
95503834 TTAATTTC---TACT-TT-TT--CAAA--ATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGG
66 GTAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
* * * * * **
95503890 GGCACGCTGAGGTATTTTCAATTTTTATGTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTG
131 GACACACTGAGGTAATTT--A--TTTCTGTTTTCAAATT--ACT-ATATTGCGAGAAATGAGTTG
* ** *
95503954 AGCCTCAGGACACACGCCGAGGTATTTTC
189 AGCCTCA--AGACACGATGAGGTAATTTC
*
95503983 AATTAAGCCTTTTGATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 -----A--------ATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * * * * *
95504048 TCAGGTCACACCGAGGTATTTTCCATTTCTATT-TTCATTATTATGTTTTTGAAAGAATCAACTC
51 TCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTT-A--A--A--------AAAAAATCAACTC
* *
95504112 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTTTCAAAAT
103 ATATTGCGAGAAATGAGTTGAGCCTCAGGACACACTGAGGTAATTT--ATTTCTGTTTTC-AAAT
* *
95504177 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
165 T--ACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGATGAGGTAATTTC
* ** *
95504231 AATTTCTGCTTT-TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCTGA
1 AATTTCTG-TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
* **
95504295 GGTAATTTCAATTTCTGTTG-T-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
65 GGTAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * * * * **
95504358 AGACACATTGAGGTATTTTCAATTTCTACTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAG
130 GGACACACTGAGGTAATTT--ATTTCT-GTTTTC----AAAT-TACT-ATATTGCGAGAAATGAG
*
95504423 TTGAGCCTCAAGACACGTTGAGGTATTTTCAATTCCTGTTC
186 TTGAGCCTCAAGACACGATGAGG-----T-AA----T-TTC
* *
95504464 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* ** **
95504529 GTAATTTCAATTTCTATT-TT--TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 GTAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
95504589 GGGGCACGCC
Statistics
Matches: 826, Mismatches: 96, Indels: 186
0.75 0.09 0.17
Matches are distributed among these distances:
185 9 0.01
187 34 0.04
189 3 0.00
192 5 0.01
193 3 0.00
194 10 0.01
197 7 0.01
199 29 0.04
200 1 0.00
201 16 0.02
204 1 0.00
205 1 0.00
206 1 0.00
207 1 0.00
208 1 0.00
210 1 0.00
212 24 0.03
214 65 0.08
215 2 0.00
216 26 0.03
218 1 0.00
219 69 0.08
220 16 0.02
221 6 0.01
222 45 0.05
223 44 0.05
225 29 0.04
226 45 0.05
227 4 0.00
228 11 0.01
229 6 0.01
232 45 0.05
233 141 0.17
235 9 0.01
236 3 0.00
243 1 0.00
248 29 0.04
250 82 0.10
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (215 bp):
AATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
GTAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
GACACACTGAGGTAATTTATTTCTGTTTTCAAATTACTATATTGCGAGAAATGAGTTGAGCCTCA
AGACACGATGAGGTAATTTC
Found at i:95504122 original size:88 final size:87
Alignment explanation
Indices: 95503927--95504172 Score: 289
Period size: 88 Copynumber: 2.8 Consensus size: 87
95503917 TGTTTTAATT
*
95503927 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCCGAGGTATTTTCAATTAAGC-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA--CCGAGGTATTTTCAATT--TCT
* * *
95503991 CTTTTGATTTCTGTTTTTCAAAAAAA
62 ATTTTCATTTATGTTTTTCAAAAAAA
* *
95504017 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCCATTTCTATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTATTT
* *
95504082 TCATTATTATGTTTTT-GAAAGAA
66 TCA-T-TTATGTTTTTCAAAAAAA
** * ** * *
95504105 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTATTT
95504170 TCA
66 TCA
95504173 AAATTCAACT
Statistics
Matches: 136, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
86 1 0.01
87 5 0.04
88 81 0.60
89 9 0.07
90 40 0.29
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (87 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTATTT
TCATTTATGTTTTTCAAAAAAA
Found at i:95504296 original size:73 final size:73
Alignment explanation
Indices: 95504094--95504857 Score: 741
Period size: 73 Copynumber: 10.1 Consensus size: 73
95504084 ATTATTATGT
* ** * ** *
95504094 TTTTGAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTC
1 TTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
95504159 AATTTCTG-
65 AATTTCTGC
* ** * *
95504167 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
95504232 ATTTCTGC
66 ATTTCTGC
* ** * *
95504240 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
95504305 ATTTCTG-
66 ATTTCTGC
* * **
95504312 TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTT
1 TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
95504377 CAATTTCTAC
64 CAATTTCTGC
* *
95504387 TTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
95504452 CAATTCCTGTTCAATTTATGT
64 CAA----T-TTC------TGC
*
95504473 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
**
95504538 ATTTCTAT
66 ATTTCTGC
* * *
95504546 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
* *
95504611 AATTCTAC
66 ATTTCTGC
* * * *
95504619 -TTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-TGGCTCACG-TGTTGAGTCA
1 TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTG-AG-GT-A
*
95504681 CTTTCAATTTCTGTTTTTATGTC
60 TTTTCAATTTC--------TG-C
* * *
95504704 TGTTTTC-TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
1 --TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
95504768 CAATTACTG-
64 CAATTTCTGC
* * * *
95504777 TTTGGCAAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTC
1 TTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* *
95504842 CATTTCTGT
65 AATTTCTGC
95504851 TTTTCAA
1 TTTTCAA
95504858 TTTATGTTTT
Statistics
Matches: 595, Mismatches: 57, Indels: 78
0.82 0.08 0.11
Matches are distributed among these distances:
71 3 0.01
72 70 0.12
73 208 0.35
74 104 0.17
75 67 0.11
76 10 0.02
79 4 0.01
80 4 0.01
83 10 0.02
84 60 0.10
85 41 0.07
86 10 0.02
88 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (73 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTTCTGC
Found at i:95504562 original size:306 final size:294
Alignment explanation
Indices: 95504103--95504661 Score: 787
Period size: 306 Copynumber: 1.9 Consensus size: 294
95504093 TTTTTGAAAG
*
95504103 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTATGT
* * *
95504168 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA
66 TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
* * *
95504233 TTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCTGAGGT
131 TTTCTACTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCCGAGGT
* * *
95504298 AATTTCAATTTCT-GTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
196 AATTTCAAATTCTACTT-TCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGAC
95504362 ACATTGAGGTATTTTCAATTTCTACTTTTCAAGAA
260 ACATTGAGGTATTTTCAATTTCTACTTTTCAAGAA
** *
95504397 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTCCTGT
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG-----T-AA----T-T
** *
95504462 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
55 TCAATTTATG-TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTG
* ** *
95504527 AGGTAATTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
119 AGGTAATTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
* * *
95504592 GCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTG
184 ACAAGCCGAGGTAATTTCAAATTCTACTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTG
95504657 AGCCT
249 AGCCT
95504662 TGGCTCACGT
Statistics
Matches: 229, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
294 46 0.20
299 1 0.00
300 2 0.01
304 1 0.00
305 10 0.04
306 167 0.73
307 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (294 bp):
AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTATGT
TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
TTTCTACTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCCGAGGT
AATTTCAAATTCTACTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACA
CATTGAGGTATTTTCAATTTCTACTTTTCAAGAA
Found at i:95504624 original size:159 final size:152
Alignment explanation
Indices: 95504093--95504857 Score: 627
Period size: 159 Copynumber: 5.1 Consensus size: 152
95504083 CATTATTATG
* ** ** * ** *
95504093 TTTTTGAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTT
1 TTTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
* * ** *
95504158 CAATT-T-C--T--GT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 CAATTCTACTTTCAATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
95504216 CGTTGAGGTATTTTCAATTTCTG
130 CGCTGAGGTATTTTCAATTTCTA
* * ** * * * *
95504239 CTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCTGAGGTAATTTC
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC
* *** *
95504304 AATT-T-CTGT---TGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
66 AATTCTACTTTCAATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
**
95504364 ATTGAGGTATTTTCAATTTCTA
131 GCTGAGGTATTTTCAATTTCTA
* ** * *
95504386 CTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT
1 TTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTT
95504451 TCAATTC--CTGTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
64 TCAATTCTACT-TTC-A---ATG--TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
95504514 TCAGGACACGCTGAGGTAATTTCAATTTCTA
122 TCAGGACACGCTGAGGTATTTTCAATTTCTA
*
95504545 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTC
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC
* * *
95504610 AAATTCTACTTTCAA------AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-TGGCTC
66 -AATTCTACTTTCAATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
* *
95504668 ACG-TGTTGAGTCACTTTCAATTTCTGTTTTTA
129 ACGCTG-AG-GT-ATTTTCAATTTC------TA
*
95504700 TGTCTGTTTTC-TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA
1 ----T-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA
* * *
95504764 TTTTCAA-T-TACTGTT---TG--GCAAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTCA
61 TTTTCAATTCTACT-TTCAATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * *
95504822 GGACATGCTGAGGTATTTTCCATTTCTG
125 GGACACGCTGAGGTATTTTCAATTTCTA
95504850 TTTTTCAA
1 TTTTTCAA
95504858 TTTATGTTTT
Statistics
Matches: 523, Mismatches: 54, Indels: 84
0.79 0.08 0.13
Matches are distributed among these distances:
145 62 0.12
146 13 0.02
147 111 0.21
148 3 0.01
149 68 0.13
150 2 0.00
155 3 0.01
156 14 0.03
157 60 0.11
158 47 0.09
159 133 0.25
160 7 0.01
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (152 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC
AATTCTACTTTCAATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTATTTTCAATTTCTA
Found at i:95504718 original size:232 final size:231
Alignment explanation
Indices: 95504235--95504841 Score: 796
Period size: 232 Copynumber: 2.6 Consensus size: 231
95504225 ATTTTCAATT
** *
95504235 TCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCTGAGGTAA
1 TCTG-TTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
* * *
95504300 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACA
64 TTTCAATTTCTTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* * * *
95504365 TTGAGGTATTTTCAATTTCTACTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
127 CTGAGGTATTTTCAAATTCTACTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC
*
95504430 TCAAGACACGTTGAGGTATTTTCAATTCCTGTTCAATTTATG
192 TCAAGACACGTTGAGGTACTTTCAATTCCTGTT--ATTTATG
95504472 --T-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
1 TCTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
* * * *
95504534 TTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCC
65 TTCAATTTCT-TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
95504599 GAGGTATTTTCAAATTCTAC-TTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-
129 GAGGTATTTTCAAATTCTACTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC
** * *
95504662 TGGCTCACGTGTTGA-GTCACTTTCAATTTCTGTT-TTTATG
194 AAG-ACAC--GTTGAGGT-ACTTTCAATTCCTGTTATTTATG
* * * *
95504702 TCTGTTTTCTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTT
1 TCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
* * * * *
95504767 TCAATTACTGTTTGGCAAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTG
66 TCAATTTCT-TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
95504832 AGGTATTTTC
130 AGGTATTTTC
95504842 CATTTCTGTT
Statistics
Matches: 328, Mismatches: 33, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
230 7 0.02
231 44 0.13
232 181 0.55
233 87 0.27
234 8 0.02
235 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (231 bp):
TCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
TCAATTTCTTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
GGTATTTTCAAATTCTACTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTACTTTCAATTCCTGTTATTTATG
Found at i:95504875 original size:159 final size:159
Alignment explanation
Indices: 95504533--95504933 Score: 483
Period size: 159 Copynumber: 2.5 Consensus size: 159
95504523 GCTGAGGTAA
95504533 TTTCAATTTCTAT-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTTCAA-TT-TATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
* * *
95504597 CCGAGGTATTTTCAAATTCTACTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT
64 CTGAGGTATTTTC-AATTCTACTTTCAAAAAAACCAACTCATACTGCGAAAGGTGAGTTGAGCCT
* * *
95504662 TGGCTCACGTGTTGAGTCACTTTCAATTTCTGTT
128 AGG--CACATGCTGAGTCACTTTCAATTTCTGTT
* * *
95504696 TTT--ATGTCTGTTTTC-TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
* *** *
95504758 GAGGTATTTTCAATTACT-GTTTGGCAAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTCA
66 GAGGTATTTTCAATT-CTACTTTCAAAAAAACCAACTCATACTGCGAAAGGTGAGTTGAGCCT-A
* *
95504822 GG-ACATGCTGAGGT-ATTTTCCATTTCTGTT
129 GGCACATGCTGA-GTCACTTTCAATTTCTGTT
* * * *
95504852 TTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAAAGGTGAGTTGAGCCTCGGCTCGCACG
1 TTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GGCACG
95504917 CTGAGGTATTTTCAATT
64 CTGAGGTATTTTCAATT
95504934 TTTTGTTTTT
Statistics
Matches: 206, Mismatches: 23, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
156 24 0.12
157 2 0.01
158 51 0.25
159 97 0.47
160 6 0.03
161 23 0.11
163 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (159 bp):
TTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
GAGGTATTTTCAATTCTACTTTCAAAAAAACCAACTCATACTGCGAAAGGTGAGTTGAGCCTAGG
CACATGCTGAGTCACTTTCAATTTCTGTT
Found at i:95505122 original size:89 final size:90
Alignment explanation
Indices: 95504955--95505122 Score: 232
Period size: 89 Copynumber: 1.9 Consensus size: 90
95504945 CAATTTATGC
* * * * *
95504955 TTTTCAAATTCTACTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCAC
*
95505020 ATGTCGAGGTATTTTCAAAATCTGT
66 ATGTCGAGCTATTTTCAAAATCTGT
* *
95505045 TTTTCAAATT-AAGTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCAC
1 TTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCAC
*
95505109 GTG-CTGAGCTATTT
66 ATGTC-GAGCTATTT
95505123 CTGTTTTAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
88 1 0.01
89 57 0.84
90 10 0.15
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (90 bp):
TTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCAC
ATGTCGAGCTATTTTCAAAATCTGT
Found at i:95505834 original size:22 final size:22
Alignment explanation
Indices: 95505803--95505865 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
95505793 GCAACCATGA
*
95505803 AGCAGCCCCATACCTCCACTAC
1 AGCAGTCCCATACCTCCACTAC
* *
95505825 AGCGGTCCCATACCCCCACTAC
1 AGCAGTCCCATACCTCCACTAC
95505847 AGCAGTCCCATACCTCCAC
1 AGCAGTCCCATACCTCCAC
95505866 AGCCCTCGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.25, C:0.49, G:0.11, T:0.14
Consensus pattern (22 bp):
AGCAGTCCCATACCTCCACTAC
Found at i:95514573 original size:28 final size:28
Alignment explanation
Indices: 95514534--95514590 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
95514524 ACTAGAAGAG
95514534 AAAAGCACTTTGAGATCCAATTCTAATA
1 AAAAGCACTTTGAGATCCAATTCTAATA
*
95514562 AAAAGCACTTTGAGATCCAATTCTGATA
1 AAAAGCACTTTGAGATCCAATTCTAATA
95514590 A
1 A
95514591 TTTCTTCCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (28 bp):
AAAAGCACTTTGAGATCCAATTCTAATA
Found at i:95518576 original size:31 final size:34
Alignment explanation
Indices: 95518526--95518589 Score: 89
Period size: 31 Copynumber: 2.0 Consensus size: 34
95518516 ATAAATAATT
* *
95518526 ATTAATAATTTTATTTAAACA-TAAAT-TTAAAA
1 ATTAATAATTTGATGTAAACATTAAATCTTAAAA
95518558 ATTAA-AATTTGATGTAAACATTAAATCTTAAA
1 ATTAATAATTTGATGTAAACATTAAATCTTAAA
95518590 TTTAAATCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 13 0.46
32 10 0.36
33 5 0.18
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.41
Consensus pattern (34 bp):
ATTAATAATTTGATGTAAACATTAAATCTTAAAA
Found at i:95518591 original size:31 final size:30
Alignment explanation
Indices: 95518526--95518595 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 30
95518516 ATAAATAATT
* *
95518526 ATTAATAATTTTATTTAAACATAAATTTAAAA
1 ATTAA-AATTTGATGTAAACATAAATTT-AAA
95518558 ATTAAAATTTGATGTAAACATTAAATCTTAAA
1 ATTAAAATTTGATGTAAACA-TAAAT-TTAAA
*
95518590 TTTAAA
1 ATTAAA
95518596 TCATGAAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 13 0.39
32 18 0.55
33 2 0.06
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.41
Consensus pattern (30 bp):
ATTAAAATTTGATGTAAACATAAATTTAAA
Found at i:95532732 original size:35 final size:35
Alignment explanation
Indices: 95532682--95532752 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
95532672 TTTGAAAATG
*
95532682 TGTAATTTCCCTTTAAAAAACCCCCAAATTAAGGT
1 TGTAATTGCCCTTTAAAAAACCCCCAAATTAAGGT
* *
95532717 TGTAATTGCCTTTTAAAAAACCCCTAAATTAAGGT
1 TGTAATTGCCCTTTAAAAAACCCCCAAATTAAGGT
95532752 T
1 T
95532753 CATAGCAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (35 bp):
TGTAATTGCCCTTTAAAAAACCCCCAAATTAAGGT
Found at i:95534954 original size:59 final size:59
Alignment explanation
Indices: 95534862--95534978 Score: 189
Period size: 59 Copynumber: 2.0 Consensus size: 59
95534852 ACATTGAAAT
*
95534862 AACTTCTAATTTATTAAATGTAACAATATAAAAATAAATTGTACAAAAATATTCAAAAG
1 AACTTCTAATTTATTAAATGAAACAATATAAAAATAAATTGTACAAAAATATTCAAAAG
* * * *
95534921 AACTTCTATTTTATTAAATGAAATAATATAAAAATAATTTGTTCAAAAATATTCAAAA
1 AACTTCTAATTTATTAAATGAAACAATATAAAAATAAATTGTACAAAAATATTCAAAA
95534979 TAAATTAATG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.35
Consensus pattern (59 bp):
AACTTCTAATTTATTAAATGAAACAATATAAAAATAAATTGTACAAAAATATTCAAAAG
Found at i:95535394 original size:18 final size:18
Alignment explanation
Indices: 95535354--95535395 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
95535344 GTGGAAAAAA
* *
95535354 GATACATATAAGGGTTAT
1 GATACACATAAGGGTTAG
*
95535372 AATACACATAAGGGTTAG
1 GATACACATAAGGGTTAG
95535390 GATACA
1 GATACA
95535396 TACCTACCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (18 bp):
GATACACATAAGGGTTAG
Found at i:95536103 original size:31 final size:32
Alignment explanation
Indices: 95536068--95536128 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
95536058 AAAAATTATA
* *
95536068 AAAAATATTAATTAA-ATTACAAAAATGAAAT
1 AAAAATATTAAATAATATTAAAAAAATGAAAT
95536099 AAAAATATTAAATAATATTAAAAAAATGAA
1 AAAAATATTAAATAATATTAAAAAAATGAA
95536129 TTTAGCCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 14 0.52
32 13 0.48
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (32 bp):
AAAAATATTAAATAATATTAAAAAAATGAAAT
Found at i:95540006 original size:22 final size:19
Alignment explanation
Indices: 95539946--95539995 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
95539936 GTTCACCGGT
* *
95539946 TAATAATGTTAATATTTTATA
1 TAATAAT-TTATTATGTT-TA
*
95539967 TAATAATTTATTGTGTTTA
1 TAATAATTTATTATGTTTA
95539986 TAATAATTTA
1 TAATAATTTA
95539996 CTTCTATGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 12 0.46
20 7 0.27
21 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (19 bp):
TAATAATTTATTATGTTTA
Found at i:95554888 original size:17 final size:18
Alignment explanation
Indices: 95554863--95554900 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
95554853 GGACTGAGTT
*
95554863 GGGCGTGTGGG-CCACAC
1 GGGCATGTGGGCCCACAC
95554880 GGGCATGTGGGCCCACAC
1 GGGCATGTGGGCCCACAC
95554898 GGG
1 GGG
95554901 TAAACCACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.13, C:0.29, G:0.47, T:0.11
Consensus pattern (18 bp):
GGGCATGTGGGCCCACAC
Found at i:95576322 original size:3 final size:3
Alignment explanation
Indices: 95576314--95576339 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
95576304 TGTAAGTAAA
95576314 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
95576340 AAAGAAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:95582731 original size:27 final size:27
Alignment explanation
Indices: 95582701--95582755 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
95582691 ATTGCTTTTT
95582701 CATTTTCTTTCTTTACGATTATCTCAA
1 CATTTTCTTTCTTTACGATTATCTCAA
95582728 CATTTTCTTTCTTTACGATTATCTCAA
1 CATTTTCTTTCTTTACGATTATCTCAA
95582755 C
1 C
95582756 TTACATAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.51
Consensus pattern (27 bp):
CATTTTCTTTCTTTACGATTATCTCAA
Found at i:95583882 original size:43 final size:44
Alignment explanation
Indices: 95583821--95583913 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
95583811 TCCTAATTGG
95583821 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
95583864 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
95583908 -AAAATA
1 GAAAATA
95583914 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:95588619 original size:43 final size:44
Alignment explanation
Indices: 95588558--95588650 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
95588548 TCCTAATTGG
95588558 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
95588601 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAATATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
95588645 -AAAATA
1 GAAAATA
95588651 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.05, T:0.29
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:95592648 original size:21 final size:21
Alignment explanation
Indices: 95592622--95592692 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
95592612 TCAGGAACAT
95592622 GGATAAATAGAAAACAGCATA
1 GGATAAATAGAAAACAGCATA
** *
95592643 GGATAAGA-ACCAAGCA-CAATCA
1 GGATAA-ATAGAAAACAGC-AT-A
*
95592665 TGGATAAATAGAAAAGAGCATA
1 -GGATAAATAGAAAACAGCATA
95592687 GGATAA
1 GGATAA
95592693 GAACCAAGCA
Statistics
Matches: 37, Mismatches: 7, Indels: 12
0.66 0.12 0.21
Matches are distributed among these distances:
20 1 0.03
21 19 0.51
22 4 0.11
23 12 0.32
24 1 0.03
ACGTcount: A:0.54, C:0.11, G:0.21, T:0.14
Consensus pattern (21 bp):
GGATAAATAGAAAACAGCATA
Found at i:95592685 original size:44 final size:44
Alignment explanation
Indices: 95592619--95592704 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
95592609 AATTCAGGAA
95592619 CATGGATAAATAGAAAACAGCATAGGATAAGAACCAAGCACAAT
1 CATGGATAAATAGAAAACAGCATAGGATAAGAACCAAGCACAAT
*
95592663 CATGGATAAATAGAAAAGAGCATAGGATAAGAACCAAGCACA
1 CATGGATAAATAGAAAACAGCATAGGATAAGAACCAAGCACA
95592705 CCCACACAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.52, C:0.15, G:0.20, T:0.13
Consensus pattern (44 bp):
CATGGATAAATAGAAAACAGCATAGGATAAGAACCAAGCACAAT
Found at i:95596614 original size:38 final size:38
Alignment explanation
Indices: 95596563--95596638 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
95596553 AACTTAGTTG
**
95596563 GTTCTTGATCTAACTAATTTAATCGGCTAGTCCAATCC
1 GTTCTTGATCTAACTAACCTAATCGGCTAGTCCAATCC
95596601 GTTCTTGATCTAACTAACCTAATCGGCTAGTCCAATCC
1 GTTCTTGATCTAACTAACCTAATCGGCTAGTCCAATCC
95596639 AATTCAATTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (38 bp):
GTTCTTGATCTAACTAACCTAATCGGCTAGTCCAATCC
Found at i:95596759 original size:114 final size:114
Alignment explanation
Indices: 95596529--95596751 Score: 376
Period size: 114 Copynumber: 2.0 Consensus size: 114
95596519 GATTCTTAAC
* *
95596529 CAATTCAATGTCCTTCAAACCACTAACTTAGTTGGTTCTTGATCTAACTAATTTAATCGGCTAGT
1 CAATTCAATGTCCTCCAAACCACTAACTTAGTTGGTTCTTGATCTAACTAATCTAATCGGCTAGT
*
95596594 CCAATCCGTTCTTGATCTAACTAACCTAATCGGCTAGTCCAATCCAATT
66 CCAATCCGTTCTTGATCTAACTAACCTAATCAGCTAGTCCAATCCAATT
*
95596643 CAATTCAATGTCCTCCAAACCACTACCTTAGTTGGTT-TTCGATCTAACTAATCTAATCGGCTAG
1 CAATTCAATGTCCTCCAAACCACTAACTTAGTTGGTTCTT-GATCTAACTAATCTAATCGGCTAG
* *
95596707 TCCAATCCGTTCTTGATCTAACTCATCTAATCAGCTAGTCCAATC
65 TCCAATCCGTTCTTGATCTAACTAACCTAATCAGCTAGTCCAATC
95596752 TGATTCAAAC
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
113 2 0.02
114 100 0.98
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.34
Consensus pattern (114 bp):
CAATTCAATGTCCTCCAAACCACTAACTTAGTTGGTTCTTGATCTAACTAATCTAATCGGCTAGT
CCAATCCGTTCTTGATCTAACTAACCTAATCAGCTAGTCCAATCCAATT
Found at i:95596819 original size:22 final size:22
Alignment explanation
Indices: 95596791--95596841 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
95596781 AAAGTTACAT
95596791 ATTTAATTTGTTAATAAAATAA
1 ATTTAATTTGTTAATAAAATAA
*
95596813 ATTTAATTTGTTAATAAAATGA
1 ATTTAATTTGTTAATAAAATAA
95596835 ATTTAAT
1 ATTTAAT
95596842 GTTAATTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (22 bp):
ATTTAATTTGTTAATAAAATAA
Found at i:95601615 original size:14 final size:15
Alignment explanation
Indices: 95601591--95601628 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
95601581 GGGACTGGGC
95601591 TTTTTCTTTTCTTTT
1 TTTTTCTTTTCTTTT
95601606 TTTTTC-TTTCTTTT
1 TTTTTCTTTTCTTTT
95601620 TTTTT-TTTT
1 TTTTTCTTTT
95601629 TTGCTGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTTCTTTT
Found at i:95601629 original size:19 final size:19
Alignment explanation
Indices: 95601593--95601628 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
95601583 GACTGGGCTT
95601593 TTTCTTTTCTTTTTTTTTC
1 TTTCTTTTCTTTTTTTTTC
95601612 TTTCTTTT-TTTTTTTTT
1 TTTCTTTTCTTTTTTTTT
95601629 TTGCTGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (19 bp):
TTTCTTTTCTTTTTTTTTC
Found at i:95602049 original size:8 final size:8
Alignment explanation
Indices: 95602022--95602088 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 8
95602012 AACTTTTAAT
95602022 AAAAATTA
1 AAAAATTA
*
95602030 AAATATT-
1 AAAAATTA
95602037 AAAAATTAA
1 AAAAATT-A
95602046 AAAAATCGTA
1 AAAAAT--TA
95602056 AAAAATATA
1 AAAAAT-TA
*
95602065 AAAATTGTA
1 AAAAAT-TA
95602074 AAAAATTA
1 AAAAATTA
*
95602082 TAAAATT
1 AAAAATT
95602089 TTATAAAGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
7 6 0.12
8 14 0.29
9 20 0.42
10 7 0.15
11 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (8 bp):
AAAAATTA
Found at i:95602080 original size:10 final size:10
Alignment explanation
Indices: 95602037--95602086 Score: 52
Period size: 10 Copynumber: 5.3 Consensus size: 10
95602027 TTAAAATATT
95602037 AAAAATTA-A
1 AAAAATTATA
**
95602046 AAAAATCGTA
1 AAAAATTATA
95602056 AAAAA-TAT-
1 AAAAATTATA
*
95602064 AAAAATTGTA
1 AAAAATTATA
95602074 AAAAATTATA
1 AAAAATTATA
95602084 AAA
1 AAA
95602087 TTTTATAAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
8 5 0.16
9 9 0.28
10 18 0.56
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (10 bp):
AAAAATTATA
Found at i:95602086 original size:18 final size:18
Alignment explanation
Indices: 95602037--95602088 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
95602027 TTAAAATATT
* *
95602037 AAAAATTAAAAAAATCGTA
1 AAAAATT-ATAAAATTGTA
95602056 AAAAA-TATAAAAATTGTA
1 AAAAATTAT-AAAATTGTA
95602074 AAAAATTATAAAATT
1 AAAAATTATAAAATT
95602089 TTATAAAGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 1 0.03
18 20 0.69
19 8 0.28
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AAAAATTATAAAATTGTA
Found at i:95602372 original size:10 final size:10
Alignment explanation
Indices: 95602357--95602411 Score: 53
Period size: 10 Copynumber: 5.8 Consensus size: 10
95602347 TAAAAAATTC
95602357 TAATTTTTAA
1 TAATTTTTAA
95602367 TAATTTTT-A
1 TAATTTTTAA
*
95602376 -AATTTTTTA
1 TAATTTTTAA
*
95602385 -AATTTTTAT
1 TAATTTTTAA
**
95602394 TAAAATTTAA
1 TAATTTTTAA
95602404 TAATTTTT
1 TAATTTTT
95602412 CTAAAATTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
8 7 0.19
9 9 0.25
10 20 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:95603114 original size:21 final size:21
Alignment explanation
Indices: 95603077--95603133 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
95603067 ATAAAAATCA
*
95603077 ATAAAAA-TTAT-AGAAA-TT
1 ATAAAAATTTATAAAAAATTT
* *
95603095 ATTAAATTTTAATAAAAAATTT
1 ATAAAAATTT-ATAAAAAATTT
95603117 ATAAAAATTTATAAAAA
1 ATAAAAATTTATAAAAA
95603134 TAGTAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
18 5 0.17
19 2 0.07
20 2 0.07
21 11 0.37
22 10 0.33
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
ATAAAAATTTATAAAAAATTT
Found at i:95603132 original size:9 final size:10
Alignment explanation
Indices: 95603051--95603134 Score: 68
Period size: 10 Copynumber: 8.6 Consensus size: 10
95603041 GACATGTGAC
95603051 AAAAATTTAT
1 AAAAATTTAT
*
95603061 AAAAA--AAT
1 AAAAATTTAT
**
95603069 AAAAATCAAT
1 AAAAATTTAT
95603079 AAAAA-TTAT
1 AAAAATTTAT
*
95603088 AGAAA-TTAT
1 AAAAATTTAT
* *
95603097 TAAATTTTAAT
1 AAAAATTT-AT
95603108 AAAAAATTTAT
1 -AAAAATTTAT
95603119 AAAAATTTAT
1 AAAAATTTAT
95603129 AAAAAT
1 AAAAAT
95603135 AGTAAAAAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
8 7 0.12
9 12 0.20
10 31 0.52
11 4 0.07
12 6 0.10
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (10 bp):
AAAAATTTAT
Found at i:95603378 original size:20 final size:19
Alignment explanation
Indices: 95603355--95603408 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 19
95603345 TTGGTATGAT
95603355 AATTTTTATATTTTTTTAC
1 AATTTTTATATTTTTTTAC
*
95603374 GAA-TTTTATATTTCTTTAC
1 -AATTTTTATATTTTTTTAC
95603393 ATATTTTTATAATTTT
1 A-ATTTTTAT-ATTTT
95603409 CTTATGACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 1 0.03
19 16 0.55
20 8 0.28
21 4 0.14
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.65
Consensus pattern (19 bp):
AATTTTTATATTTTTTTAC
Found at i:95603479 original size:9 final size:10
Alignment explanation
Indices: 95603417--95603492 Score: 66
Period size: 10 Copynumber: 7.6 Consensus size: 10
95603407 TTCTTATGAC
*
95603417 TTTATAAAAT
1 TTTATAATAT
*
95603427 TTTATAATTT
1 TTTATAATAT
* *
95603437 TTTTTCTATAT
1 TTTAT-AATAT
95603448 TTCTAT-ATAT
1 TT-TATAATAT
95603458 TTTATAATAT
1 TTTATAATAT
*
95603468 TTTATGAT-T
1 TTTATAATAT
*
95603477 TTTATAAAAT
1 TTTATAATAT
95603487 TTTATA
1 TTTATA
95603493 GTTATTTTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
9 10 0.19
10 36 0.68
11 5 0.09
12 2 0.04
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (10 bp):
TTTATAATAT
Found at i:95603479 original size:19 final size:19
Alignment explanation
Indices: 95603395--95603491 Score: 72
Period size: 19 Copynumber: 4.9 Consensus size: 19
95603385 TTCTTTACAT
*
95603395 ATTTTTATAATTTTCTTATG
1 ATTTTTATAATATT-TTATG
* * *
95603415 A-CTTTATAAAATTTTATA
1 ATTTTTATAATATTTTATG
* *
95603433 ATTTTTTTTCTATATTTCTAT-
1 A-TTTTTAT-AATATTT-TATG
95603454 ATATTTTATAATATTTTATG
1 AT-TTTTATAATATTTTATG
*
95603474 ATTTTTATAAAATTTTAT
1 ATTTTTATAATATTTTAT
95603492 AGTTATTTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 13
0.71 0.13 0.15
Matches are distributed among these distances:
18 5 0.08
19 27 0.45
20 14 0.23
21 11 0.18
22 3 0.05
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTTTATAATATTTTATG
Found at i:95603481 original size:60 final size:61
Alignment explanation
Indices: 95603393--95603520 Score: 167
Period size: 60 Copynumber: 2.1 Consensus size: 61
95603383 ATTTCTTTAC
*
95603393 ATAT-TTTTATAATTTTCTTATGACTTTATAAAATTTTATAATT-TTTTTTCTAT-ATTTCT
1 ATATATTTTATAATATTCTTATGACTTTATAAAATTTTATAATTATTTTTTCTATGATTT-T
* * *
95603452 ATATATTTTATAATATT-TTATGATTTTTATAAAATTTTATAGTTATTTTTTTTATGATTTT
1 ATATATTTTATAATATTCTTATGA-CTTTATAAAATTTTATAATTATTTTTTCTATGATTTT
95603513 A-ATATTTT
1 ATATATTTT
95603521 TTTCCTAATT
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
59 10 0.16
60 36 0.59
61 11 0.18
62 4 0.07
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (61 bp):
ATATATTTTATAATATTCTTATGACTTTATAAAATTTTATAATTATTTTTTCTATGATTTT
Found at i:95611093 original size:18 final size:18
Alignment explanation
Indices: 95611061--95611106 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
95611051 GTCAACATGG
*
95611061 GCGTATGGG-CCACACAA
1 GCGTGTGGGCCCACACAA
*
95611078 GCGTGTGGGCCCACACAG
1 GCGTGTGGGCCCACACAA
*
95611096 GCATGTGGGCC
1 GCGTGTGGGCC
95611107 TAAATTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.20, C:0.30, G:0.37, T:0.13
Consensus pattern (18 bp):
GCGTGTGGGCCCACACAA
Found at i:95612220 original size:28 final size:28
Alignment explanation
Indices: 95612166--95612220 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
95612156 GGGTATTACA
* *
95612166 GATAAGATAGTCTTCAAAATCATTAAAG
1 GATAAGATAGTCTTCAAAATAAATAAAG
* * *
95612194 GATAATATATTCTTGAAAATAAATAAA
1 GATAAGATAGTCTTCAAAATAAATAAA
95612221 TAAAATAAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (28 bp):
GATAAGATAGTCTTCAAAATAAATAAAG
Found at i:95615503 original size:21 final size:22
Alignment explanation
Indices: 95615457--95615503 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
95615447 TAGTCCTCTA
*
95615457 ATCAATTCTAATCAATGATTCT
1 ATCAATTCTAATCAATAATTCT
*
95615479 ATCAATT-TAATCCATAACTTC-
1 ATCAATTCTAATCAATAA-TTCT
95615500 ATCA
1 ATCA
95615504 TTTGCTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.38
Consensus pattern (22 bp):
ATCAATTCTAATCAATAATTCT
Found at i:95615918 original size:3 final size:3
Alignment explanation
Indices: 95615910--95615948 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
95615900 TTGATAAAAT
*
95615910 ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
95615949 ATATCTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:95621306 original size:40 final size:40
Alignment explanation
Indices: 95621234--95621419 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
95621224 GCTACTCGTT
* *
95621234 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
95621274 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACGCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
95621314 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
95621354 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
95621395 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
95621420 CATCATTCAA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 111 0.87
41 14 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:95629357 original size:40 final size:40
Alignment explanation
Indices: 95629320--95629504 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
95629310 GCTACTCGTT
* *
95629320 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
95629360 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
95629400 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
95629439 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
95629480 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
95629505 CATCATTCAA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:95629431 original size:79 final size:82
Alignment explanation
Indices: 95629320--95629504 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
95629310 GCTACTCGTT
* * *
95629320 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
95629383 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
95629400 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
95629463 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
95629480 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
95629505 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:95632762 original size:26 final size:25
Alignment explanation
Indices: 95632704--95632762 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
95632694 AGTAAATAAA
*
95632704 TAAAAATAATACTAAATAAAAATAC
1 TAAAAATAATACTAAAGAAAAATAC
* * **
95632729 TAATAATAATAGCTTAAGAAAAATTG
1 TAAAAATAATA-CTAAAGAAAAATAC
95632755 TAAAAATA
1 TAAAAATA
95632763 TGGTGGTGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 10 0.37
26 17 0.63
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.27
Consensus pattern (25 bp):
TAAAAATAATACTAAAGAAAAATAC
Found at i:95644779 original size:14 final size:15
Alignment explanation
Indices: 95644760--95644816 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
95644750 AATCTTTAAG
95644760 GATATG-CAATCTTA
1 GATATGACAATCTTA
95644774 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
95644791 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
95644810 GATATGA
1 GATATGA
95644817 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:95644801 original size:36 final size:38
Alignment explanation
Indices: 95644760--95644838 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
95644750 AATCTTTAAG
95644760 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
95644796 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
95644836 GAT
1 GAT
95644839 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:95644807 original size:19 final size:19
Alignment explanation
Indices: 95644760--95644838 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
95644750 AATCTTTAAG
95644760 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95644779 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95644796 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95644815 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
95644836 GAT
1 GAT
95644839 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:95646623 original size:32 final size:34
Alignment explanation
Indices: 95646587--95646650 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 34
95646577 TAAACTAAAA
95646587 TTTTTAAATA-AAAAA-AAAACTTAATTTTTAGC
1 TTTTTAAATACAAAAATAAAACTTAATTTTTAGC
*
95646619 TTTTTAAATACAAAAATTAAATCTTAATTTTT
1 TTTTTAAATACAAAAA-TAAAACTTAATTTTT
95646651 GCCAAAAGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
35 13 0.46
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (34 bp):
TTTTTAAATACAAAAATAAAACTTAATTTTTAGC
Found at i:95650033 original size:21 final size:21
Alignment explanation
Indices: 95650009--95650048 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
95649999 AATTATTAAA
95650009 AATTATTAAAAATAAAAATAG
1 AATTATTAAAAATAAAAATAG
* *
95650030 AATTTTTAGAAATAAAAAT
1 AATTATTAAAAATAAAAAT
95650049 CAATTACTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (21 bp):
AATTATTAAAAATAAAAATAG
Found at i:95651926 original size:39 final size:40
Alignment explanation
Indices: 95651878--95651969 Score: 141
Period size: 39 Copynumber: 2.3 Consensus size: 40
95651868 CGTTTGAATG
95651878 AAAAACGCCGCTAAAGAACGAGCATTAGCGGCGC-ATTTT
1 AAAAACGCCGCTAAAGAACGAGCATTAGCGGCGCTATTTT
* * * *
95651917 GAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTTT
1 AAAAACGCCGCTAAAGAACGAGCATTAGCGGCGCTATTTT
95651957 AAAAACGCCGCTA
1 AAAAACGCCGCTA
95651970 TATGTACACC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 31 0.66
40 16 0.34
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGAACGAGCATTAGCGGCGCTATTTT
Found at i:95652120 original size:40 final size:40
Alignment explanation
Indices: 95652076--95652175 Score: 125
Period size: 40 Copynumber: 2.5 Consensus size: 40
95652066 AGATCGAGTA
95652076 TTAGCGGCGCTTTTTTAAAAACGCCGCTATATG-TACATCT
1 TTAGCGGCGCTTTTTTAAAAACGCCGCTA-ATGCTACATCT
**
95652116 TTAGCGGCGC-TTTTTAGAAAACGCCGCTAATGCTTGATCT
1 TTAGCGGCGCTTTTTTA-AAAACGCCGCTAATGCTACATCT
* *
95652156 TTAACGGCG-TTTTTCAAAAA
1 TTAGCGGCGCTTTTTTAAAAA
95652176 ACGCTGCAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
39 13 0.25
40 40 0.75
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTTAAAAACGCCGCTAATGCTACATCT
Found at i:95652501 original size:39 final size:38
Alignment explanation
Indices: 95652414--95652507 Score: 93
Period size: 40 Copynumber: 2.4 Consensus size: 38
95652404 AGTATTAGTG
*
95652414 GTGCTTTTTTAAAAACACCGCTATATGTACATCTTTAGC
1 GTGC-TTTTTAAAAACGCCGCTATATGTACATCTTTAGC
**
95652453 GGTGCTTTTTAGAAAACGCCGCTA-ATGCTTGATCTTTAGC
1 -GTGCTTTTTA-AAAACGCCGCTATATG-TACATCTTTAGC
95652493 -TGCGTTTTTCAAAAA
1 GTGC-TTTTT-AAAAA
95652508 ACGCTGCAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
38 3 0.06
39 18 0.38
40 26 0.55
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (38 bp):
GTGCTTTTTAAAAACGCCGCTATATGTACATCTTTAGC
Found at i:95652527 original size:332 final size:330
Alignment explanation
Indices: 95651902--95652657 Score: 1262
Period size: 332 Copynumber: 2.3 Consensus size: 330
95651892 AGAACGAGCA
* * * * *
95651902 TTAGCGGCGCATTTTGAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTTTAAAAACGCCG
1 TTAGCAGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGAGCTTTTTTAAAAACGCCG
* * *
95651967 CTATATGTACACCCTTTAGCGGTGTTTTTCAAAAAATACCGCAAAAAAATTAACACAACGTATTG
66 CTATATGTACACCCTTTAGCGGCGTTTTTCAAAAAATACAGCAAAAAAATTAACACAACGGATTG
95652032 AGCCTTTAGCGGCGCTTTTTAAAAACGGTGCTAAAGATCGAGTATTAGCGGCGCTTTTTTAAAAA
131 AGCCTTTAGCGGCGCTTTTTAAAAACGGTGCTAAAGATCGAGTATTAGCGGCGCTTTTTTAAAAA
*
95652097 CGCCGCTATATGTACATCTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAACG
196 CACCGCTATATGTACATCTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAACG
**
95652162 GCGTTTTTCAAAAAACGCTGCAAAAAAAATTAACACAACGCCGTTGTTTTGTATTGAGCCTTTAG
261 GCGTTTTTCAAAAAACGCTGCAAAAAAAATTAACACAACGCCGTCATTTTGTATTGAGCCTTTAG
95652227 TGGCT
326 TGGCT
* *
95652232 TTAGCAGCGCTTTTTAAAAATGCCGCTAAAGATTGAGTATTAGCGGAGTTTTTTTAAAAACGCCG
1 TTAGCAGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGAGCTTTTTTAAAAACGCCG
* * *
95652297 CAATATTTACACCCTTTAGCGGCGTTTTTCAAAAAATATAGCAAAAAAATTAACACAACGCCGAT
66 CTATATGTACACCCTTTAGCGGCGTTTTTCAAAAAATACAGCAAAAAAATTAACACAACG--GAT
* * *
95652362 TGAGCCTTTAGCGGCGCTTTTTAAAAACGTTGCTAAAGATCGAGTATTAGTGGTGCTTTTTTAAA
129 TGAGCCTTTAGCGGCGCTTTTTAAAAACGGTGCTAAAGATCGAGTATTAGCGGCGCTTTTTTAAA
* *
95652427 AACACCGCTATATGTACATCTTTAGCGGTGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAG
194 AACACCGCTATATGTACATCTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAA
*
95652492 CTGCGTTTTTCAAAAAACGCTGCAAAAAAAATTAACACAACGCCGTCATTTTGTATTGAGCCTTT
259 CGGCGTTTTTCAAAAAACGCTGCAAAAAAAATTAACACAACGCCGTCATTTTGTATTGAGCCTTT
95652557 AGTGGCT
324 AGTGGCT
**
95652564 TTAGCAGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGAGCTTTTTTAAAAACGTGG
1 TTAGCAGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGAGCTTTTTTAAAAACGCCG
95652629 CTATATGTACA-CCTTTAGCGGCGCTTTTT
66 CTATATGTACACCCTTTAGCGGCG-TTTTT
95652658 AGAAAACGCC
Statistics
Matches: 395, Mismatches: 28, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
330 113 0.29
331 12 0.03
332 270 0.68
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (330 bp):
TTAGCAGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGAGCTTTTTTAAAAACGCCG
CTATATGTACACCCTTTAGCGGCGTTTTTCAAAAAATACAGCAAAAAAATTAACACAACGGATTG
AGCCTTTAGCGGCGCTTTTTAAAAACGGTGCTAAAGATCGAGTATTAGCGGCGCTTTTTTAAAAA
CACCGCTATATGTACATCTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAACG
GCGTTTTTCAAAAAACGCTGCAAAAAAAATTAACACAACGCCGTCATTTTGTATTGAGCCTTTAG
TGGCT
Found at i:95652731 original size:195 final size:195
Alignment explanation
Indices: 95652367--95652824 Score: 666
Period size: 195 Copynumber: 2.3 Consensus size: 195
95652357 CCGATTGAGC
* ** * * *
95652367 CTTTAGCGGCGCTTTTTAAAAACGTTGCTAAAGATCGAGTATTAGTGGTGCTTTTTTAAAAACAC
1 CTTTAGCGGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGAGCTTTTTTAAAAACGC
* * *
95652432 CGCTATATGTACATCTTTAGCGGTGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAGCTGCG
66 CGCTATATGTACACCTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAGCGGCG
* ** *
95652497 TTTTTCAAAAAACGCTGCAAAAAAAATTAACACAACGCCGTCATTTTGTATTGAGCCTTTAGTGG
131 TTTTTCAAAAAACACCACAAAAAAAATTAACAAAACGCCGTCATTTTGTATTGAGCCTTTAGTGG
* *
95652562 CTTTAGCAGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGAGCTTTTTTAAAAACGT
1 CTTTAGCGGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGAGCTTTTTTAAAAACGC
*
95652627 GGCTATATGTACACCTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAGCGGCG
66 CGCTATATGTACACCTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAGCGGCG
* * * ** * *
95652692 CTTTTT-AGAAAACACCACAAAAGAATTTTGCAAAACGCCGTCTTTTTGTATTGAGCTTTTAGTG
131 -TTTTTCAAAAAACACCACAAAAAAAATTAACAAAACGCCGTCATTTTGTATTGAGCCTTTAGTG
95652756 G
195 G
* *
95652757 CTTTAGCGGCACTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTTTAATAAACG
1 CTTTAGCGGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGAGCTTTTTTAA-AAACG
95652822 CCG
65 CCG
95652825 TTATGAAATG
Statistics
Matches: 233, Mismatches: 28, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
195 222 0.95
196 11 0.05
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (195 bp):
CTTTAGCGGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTATTAGCGGAGCTTTTTTAAAAACGC
CGCTATATGTACACCTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAGCGGCG
TTTTTCAAAAAACACCACAAAAAAAATTAACAAAACGCCGTCATTTTGTATTGAGCCTTTAGTGG
Found at i:95653009 original size:21 final size:21
Alignment explanation
Indices: 95652963--95653056 Score: 55
Period size: 22 Copynumber: 4.4 Consensus size: 21
95652953 TTAATTATTA
* *
95652963 TTATAGTTTAGGGTTTATGGT
1 TTATGGTTAAGGGTTTATGGT
*
95652984 ATATGGTTAAGGGTTTAAT-GT
1 TTATGGTTAAGGGTTT-ATGGT
**** *
95653005 TTATGAGTTACTATTTTAAGGT
1 TTATG-GTTAAGGGTTTATGGT
* * *
95653027 TTATGGATTATGGGTTTAGGGA
1 TTATGG-TTAAGGGTTTATGGT
95653049 TTATGGTT
1 TTATGGTT
95653057 TAAGTGTGGT
Statistics
Matches: 54, Mismatches: 15, Indels: 8
0.70 0.19 0.10
Matches are distributed among these distances:
21 23 0.43
22 31 0.57
ACGTcount: A:0.23, C:0.01, G:0.28, T:0.48
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATGGT
Found at i:95653044 original size:22 final size:25
Alignment explanation
Indices: 95653019--95653072 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 25
95653009 GAGTTACTAT
*
95653019 TTTAAGGTTTATGGATT-A-TG-GG
1 TTTAAGGATTATGGATTAAGTGTGG
* *
95653041 TTTAGGGATTATGGTTTAAGTGTGG
1 TTTAAGGATTATGGATTAAGTGTGG
95653066 TTTAAGG
1 TTTAAGG
95653073 GTTAGGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 14 0.56
23 1 0.04
24 2 0.08
25 8 0.32
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (25 bp):
TTTAAGGATTATGGATTAAGTGTGG
Done.