Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 288 of 362
Found at i:96926205 original size:10 final size:10
Alignment explanation
Indices: 96926168--96926247 Score: 51
Period size: 10 Copynumber: 8.0 Consensus size: 10
96926158 TTTTTTAAAT
96926168 TTTAT-AAAA
1 TTTATAAAAA
96926177 TTT-TAAAACA
1 TTTATAAAA-A
96926187 -TTATAAAAA
1 TTTATAAAAA
96926196 TTTATAAAAAA
1 TTTAT-AAAAA
*
96926207 TATTAAATAAAA
1 T-TTATA-AAAA
*
96926219 TTTA-AAAAG
1 TTTATAAAAA
* *
96926228 TTAAAAAAAA
1 TTTATAAAAA
*
96926238 TTAATAAAAA
1 TTTATAAAAA
96926248 AATAGTTTAA
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
8 1 0.02
9 15 0.26
10 24 0.41
11 10 0.17
12 8 0.14
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (10 bp):
TTTATAAAAA
Found at i:96926211 original size:22 final size:22
Alignment explanation
Indices: 96926181--96926226 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
96926171 ATAAAATTTT
*
96926181 AAAACATTATA-AAAATTTATAA
1 AAAACATTAAATAAAATTTA-AA
*
96926203 AAAATATTAAATAAAATTTAAA
1 AAAACATTAAATAAAATTTAAA
96926225 AA
1 AA
96926227 GTTAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAACATTAAATAAAATTTAAA
Found at i:96926861 original size:23 final size:23
Alignment explanation
Indices: 96926835--96926888 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
96926825 TGATTTTTAA
*
96926835 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
96926858 ATTTAGGATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
96926881 ATTTAGAA
1 ATTTAGAA
96926889 AAAAATCCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:96926862 original size:13 final size:13
Alignment explanation
Indices: 96926844--96926886 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
96926834 AATTTTGAAT
96926844 TATTTAGTGATAA
1 TATTTAGTGATAA
96926857 TATTTAG-GAT--
1 TATTTAGTGATAA
96926867 TATTTAGTGATAA
1 TATTTAGTGATAA
96926880 TATTTAG
1 TATTTAG
96926887 AAAAAAATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:96936343 original size:57 final size:56
Alignment explanation
Indices: 96936253--96936380 Score: 166
Period size: 57 Copynumber: 2.3 Consensus size: 56
96936243 TGTGAAAACG
** *
96936253 GCACTTAGTGTGTGAATTATTGAGGATGACACTTACTGTGCGAAACATCCAGAAATA
1 GCACTTAGTGTGCAAATTATTGAAGATGACACTTACTGTGCGAAACATCCA-AAATA
* * ** * *
96936310 GCACTTAGTGTGCAAATTATTGAAGATGGCACTTATTGTGCGAGTCATCCAAGATG
1 GCACTTAGTGTGCAAATTATTGAAGATGACACTTACTGTGCGAAACATCCAAAATA
96936366 GCACTTAGTGTGCAA
1 GCACTTAGTGTGCAA
96936381 TACATCTGTG
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
56 18 0.29
57 44 0.71
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (56 bp):
GCACTTAGTGTGCAAATTATTGAAGATGACACTTACTGTGCGAAACATCCAAAATA
Found at i:96936349 original size:28 final size:28
Alignment explanation
Indices: 96936277--96936380 Score: 93
Period size: 28 Copynumber: 3.7 Consensus size: 28
96936267 AATTATTGAG
* *
96936277 GATGACACTTACTGTGCGAAA-CATCCAGA
1 GATGGCACTTAGTGTGC-AAATCATCCA-A
* * * **
96936306 AATAGCACTTAGTGTGCAAATTATTGAA
1 GATGGCACTTAGTGTGCAAATCATCCAA
* * *
96936334 GATGGCACTTATTGTGCGAGTCATCCAA
1 GATGGCACTTAGTGTGCAAATCATCCAA
96936362 GATGGCACTTAGTGTGCAA
1 GATGGCACTTAGTGTGCAA
96936381 TACATCTGTG
Statistics
Matches: 57, Mismatches: 17, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
28 41 0.72
29 16 0.28
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (28 bp):
GATGGCACTTAGTGTGCAAATCATCCAA
Found at i:96944160 original size:16 final size:16
Alignment explanation
Indices: 96944139--96944207 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
96944129 GATTAGCTAT
*
96944139 TACACCACTAATCCAA
1 TACACCTCTAATCCAA
96944155 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
96944172 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
96944188 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
96944204 TACA
1 TACA
96944208 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
16 35 0.69
17 16 0.31
ACGTcount: A:0.39, C:0.38, G:0.00, T:0.23
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:96944183 original size:33 final size:32
Alignment explanation
Indices: 96944139--96944207 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
96944129 GATTAGCTAT
96944139 TACACCACTAATCCAATACACCTCTAATCCCAA
1 TACACCACTAATCCAATACACCTCTAAT-CCAA
*
96944172 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCACTAATCCAATACACCTCTAATCCAA
96944204 TACA
1 TACA
96944208 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.39, C:0.38, G:0.00, T:0.23
Consensus pattern (32 bp):
TACACCACTAATCCAATACACCTCTAATCCAA
Found at i:96944441 original size:20 final size:20
Alignment explanation
Indices: 96944416--96944458 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
96944406 TAATATTTTT
*
96944416 ATATTTTATTAGTAAATATA
1 ATATTTTATTAGAAAATATA
* *
96944436 ATATTTTTTTTGAAAATATA
1 ATATTTTATTAGAAAATATA
96944456 ATA
1 ATA
96944459 ATATTTCGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
ATATTTTATTAGAAAATATA
Found at i:96957521 original size:8 final size:8
Alignment explanation
Indices: 96957504--96957548 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
96957494 AATATATGCT
*
96957504 TTATTTTA
1 TTATTATA
96957512 TTATTATA
1 TTATTATA
96957520 TTATATTATA
1 -T-TATTATA
*
96957530 TTAATATA
1 TTATTATA
96957538 TTATTATA
1 TTATTATA
96957546 TTA
1 TTA
96957549 ATTTTTTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 23 0.72
9 2 0.06
10 7 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TTATTATA
Found at i:96957526 original size:13 final size:13
Alignment explanation
Indices: 96957505--96957548 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
96957495 ATATATGCTT
*
96957505 TATTTTATTATTA
1 TATTATATTATTA
96957518 TATTATATTA-TA
1 TATTATATTATTA
*
96957530 TTAATATATTATTA
1 -TATTATATTATTA
96957544 TATTA
1 TATTA
96957549 ATTTTTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 2 0.08
13 22 0.85
14 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:96957545 original size:16 final size:17
Alignment explanation
Indices: 96957503--96957550 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
96957493 TAATATATGC
* *
96957503 TTTATTTTATTATTATA
1 TTTATTATATTAATATA
96957520 TTATATTATATTAATATA
1 TT-TATTATATTAATATA
96957538 -TTATTATATTAAT
1 TTTATTATATTAAT
96957551 TTTTTAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 12 0.43
17 3 0.11
18 13 0.46
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATTATATTAATATA
Found at i:96960007 original size:52 final size:51
Alignment explanation
Indices: 96959885--96960063 Score: 240
Period size: 51 Copynumber: 3.5 Consensus size: 51
96959875 TCACTAGTGA
* * *
96959885 CACAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAAC-TTGGT
1 CACAAGTGTGGTACTATGTGAAGGCCATTTTGTGAAGAAGATAGCTTTGGT
96959934 CACAAGTGTGGTACTATGTGAAGGCCATTTTGTGAAGAAAGATAGCTTTGGT
1 CACAAGTGTGGTACTATGTGAAGGCCATTTTGTGAAG-AAGATAGCTTTGGT
* *
96959986 CACAAGTGTGGTACTATGTGAAGGCCACTTTT-TGAAGAAGGTAGCTTT-GA
1 CACAAGTGTGGTACTATGTGAAGGCCA-TTTTGTGAAGAAGATAGCTTTGGT
* *
96960036 CGACAAGGGTGGTACTATGTGTAGGCCA
1 C-ACAAGTGTGGTACTATGTGAAGGCCA
96960064 CCGGGTATCC
Statistics
Matches: 118, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
49 35 0.30
50 2 0.02
51 40 0.34
52 37 0.31
53 4 0.03
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (51 bp):
CACAAGTGTGGTACTATGTGAAGGCCATTTTGTGAAGAAGATAGCTTTGGT
Found at i:96964838 original size:43 final size:44
Alignment explanation
Indices: 96964764--96964847 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 44
96964754 TTGAGGTCTG
*
96964764 AAAATGAAACCTAGATCCTTTATTAATTTAATAAAATGATTTCA
1 AAAATGAAACCTAGATCCTTTAATAATTTAATAAAATGATTTCA
* * * *
96964808 AAAATGAAATCTGGATGC-TTAATAATTTAATACAATGATT
1 AAAATGAAACCTAGATCCTTTAATAATTTAATAAAATGATT
96964848 GATAGAGTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 20 0.57
44 15 0.43
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.36
Consensus pattern (44 bp):
AAAATGAAACCTAGATCCTTTAATAATTTAATAAAATGATTTCA
Found at i:96971247 original size:42 final size:42
Alignment explanation
Indices: 96971201--96971347 Score: 111
Period size: 42 Copynumber: 3.3 Consensus size: 42
96971191 CATAGTTCAA
*
96971201 CTATGGTCATACACATCTTTACATA-AT-GATGCCATAACCCAG
1 CTATGGTCATACACAT-ATT-CATATATCGATGCCATAACCCAG
* * *
96971243 CTATGGTCTTACACATATTCATATATCGATGTCATAGCCCAG
1 CTATGGTCATACACATATTCATATATCGATGCCATAACCCAG
* * *
96971285 CTATGATCTTACATGTAATCACATA-TCACATATCGATGCCATAGCCCAG
1 CTATG---GT-CA--T-A-CACATATTCATATATCGATGCCATAACCCAG
*
96971334 CTATGGTCTTACAC
1 CTATGGTCATACAC
96971348 GAATCACATA
Statistics
Matches: 85, Mismatches: 10, Indels: 21
0.73 0.09 0.18
Matches are distributed among these distances:
40 4 0.05
41 7 0.08
42 34 0.40
43 1 0.01
45 2 0.02
46 2 0.02
48 1 0.01
49 28 0.33
50 6 0.07
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (42 bp):
CTATGGTCATACACATATTCATATATCGATGCCATAACCCAG
Found at i:96971328 original size:49 final size:48
Alignment explanation
Indices: 96971254--96971359 Score: 158
Period size: 49 Copynumber: 2.2 Consensus size: 48
96971244 TATGGTCTTA
* * *
96971254 CACATATTCATATATCGATGTCATAGCCCAGCTATGATCTTACATGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGATCTTACACG-AAT
*
96971304 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGATCTTACACGAAT
96971352 CACATATC
1 CACATATC
96971360 TCACTGATGC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 11 0.21
49 35 0.67
50 6 0.12
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.29
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGATCTTACACGAAT
Found at i:96971494 original size:31 final size:31
Alignment explanation
Indices: 96971459--96971607 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
96971449 CTTGTCACTT
*
96971459 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
96971490 GTAGCCGGAGCTACCATTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
96971521 GTAGCCGGAGCTGCCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
96971552 GTAGCAGAAGCTACCACTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
96971583 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
96971608 TGTCATTTGT
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 105 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:96971686 original size:50 final size:50
Alignment explanation
Indices: 96971583--96971759 Score: 300
Period size: 50 Copynumber: 3.5 Consensus size: 50
96971573 CATTGATCAG
* *
96971583 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
96971634 GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
96971684 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
96971734 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
96971760 GTTGCCATGG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 95 0.81
51 23 0.19
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:96976769 original size:20 final size:20
Alignment explanation
Indices: 96976741--96976781 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
96976731 GTTGGAAATA
*
96976741 ATATGGTTGTTTAATGTATG
1 ATATGGTTGTTTAAGGTATG
*
96976761 ATATTGTTGTTTAAGGTATG
1 ATATGGTTGTTTAAGGTATG
96976781 A
1 A
96976782 GATGATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (20 bp):
ATATGGTTGTTTAAGGTATG
Found at i:96977490 original size:11 final size:11
Alignment explanation
Indices: 96977474--96977499 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
96977464 AAGTAACAGA
96977474 CATTTCACAAG
1 CATTTCACAAG
96977485 CATTTCACAAG
1 CATTTCACAAG
96977496 CATT
1 CATT
96977500 GTATTATAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.31
Consensus pattern (11 bp):
CATTTCACAAG
Found at i:96980296 original size:17 final size:16
Alignment explanation
Indices: 96980253--96980309 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 16
96980243 ATAAATGATG
96980253 ATTTTTCATCTTTTTA
1 ATTTTTCATCTTTTTA
*
96980269 TTATTTATCATCTTTTTA
1 --ATTTTTCATCTTTTTA
*
96980287 ATTTTGTCATTTTCTTTA
1 ATTTT-TCATCTT-TTTA
96980305 ATTTT
1 ATTTT
96980310 ATTTTCCATG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 4 0.12
17 6 0.18
18 24 0.71
ACGTcount: A:0.19, C:0.11, G:0.02, T:0.68
Consensus pattern (16 bp):
ATTTTTCATCTTTTTA
Found at i:96986660 original size:12 final size:12
Alignment explanation
Indices: 96986643--96986709 Score: 50
Period size: 12 Copynumber: 5.5 Consensus size: 12
96986633 TTTTTTAAGA
96986643 AAAATAATATAT
1 AAAATAATATAT
96986655 AAAATAGAAAGTATAT
1 AAAAT---AA-TATAT
* *
96986671 AAAATAATTTAC
1 AAAATAATATAT
96986683 AAAATAAT-TAT
1 AAAATAATATAT
*
96986694 ATAATAA-ATA-
1 AAAATAATATAT
96986704 AAAATA
1 AAAATA
96986710 TCACATAATA
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
10 5 0.11
11 10 0.22
12 16 0.36
13 2 0.04
15 2 0.04
16 10 0.22
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (12 bp):
AAAATAATATAT
Found at i:96986860 original size:28 final size:28
Alignment explanation
Indices: 96986790--96986860 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
96986780 TTACAAATTC
96986790 TAAAATTATAAATAATATAATGAGTAATA
1 TAAAA-TATAAATAATATAATGAGTAATA
* * *
96986819 TAAAACATATATAATATGAT-AGATAATA
1 TAAAATATAAATAATATAATGAG-TAATA
* *
96986847 TATAATATACATAA
1 TAAAATATAAATAA
96986861 AATATAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
27 2 0.06
28 28 0.80
29 5 0.14
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.34
Consensus pattern (28 bp):
TAAAATATAAATAATATAATGAGTAATA
Found at i:96989371 original size:205 final size:206
Alignment explanation
Indices: 96988789--96989471 Score: 1035
Period size: 205 Copynumber: 3.3 Consensus size: 206
96988779 CAAATCTGCT
* *
96988789 TCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATC
1 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTCTAATC
* * * *
96988854 GTCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGATGGAGACGCCAAATTTCGATTT
66 ATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAG-TGGAGATGCCAGACTTCGATTT
* * * *
96988919 GTTCTCTGACAAAACAGAGATGACAAATCATCTTAGATTTGCTTCAGCGTAAACATGCGAAAGCC
130 GTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCC
96988984 AAATCAGCTATG
195 AAATCAGCTATG
* * *
96988996 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATATTTCTTCAGTCTAATC
1 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTCTAATC
* * *
96989061 ATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATTGAAGTGGAGATGCCAGACTTCGATTTG
66 ATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATGCCAGACTTCGATTTG
96989126 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCA
96989191 AATCAGCTATG
196 AATCAGCTATG
* ** * *
96989202 TCTTCGATTTTTTCCTTGTAAGCACAAGGATATCAAACCATCTTGGATC-TGCTTCAGTATAAAC
1 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTCTAATC
* * *
96989266 ATCTGAAGGTGAGATCTGCTATGTATCTTCTCCCCGTTGAAGTGGAGATGCCTGACTTCAATTTG
66 ATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATGCCAGACTTCGATTTG
* * * *
96989331 CTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCT
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCA
96989396 AATCAGCTATG
196 AATCAGCTATG
* * * ** * *
96989407 TTTTTGGTTCATTCCTTGTAAGCACAAGGATTCCAAACCATCTTGGATCTTGCTTCAGCCTAATC
1 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTCTAATC
96989472 CGCTATGCTG
Statistics
Matches: 433, Mismatches: 42, Indels: 3
0.91 0.09 0.01
Matches are distributed among these distances:
205 185 0.43
206 148 0.34
207 100 0.23
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (206 bp):
TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTCTAATC
ATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATGCCAGACTTCGATTTG
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCA
AATCAGCTATG
Found at i:96997556 original size:15 final size:15
Alignment explanation
Indices: 96997514--96997563 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
96997504 ATAACTTTGA
*
96997514 ATGCAAATG-ATGCG
1 ATGCAAATGCATGAG
96997528 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
96997543 ATGCAAATGCATGA-
1 ATGCAAATGCATGAG
96997557 ATGCAAA
1 ATGCAAA
96997564 AAGGATATCG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:96997607 original size:14 final size:14
Alignment explanation
Indices: 96997584--96997613 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
96997574 ATTCTGGTTC
96997584 AACTTCATTTAGAA
1 AACTTCATTTAGAA
*
96997598 AACTTTATTTAGAA
1 AACTTCATTTAGAA
96997612 AA
1 AA
96997614 AGAATATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (14 bp):
AACTTCATTTAGAA
Found at i:97001584 original size:33 final size:32
Alignment explanation
Indices: 97001542--97001617 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
97001532 AATATGATAG
*
97001542 ATAATATATATATACATAACATATAAAAAAAT
1 ATAATATATATATAAATAACATATAAAAAAAT
*** *
97001574 AATAATATATA-ATAAATGTTATATAATAAAAT
1 -ATAATATATATATAAATAACATATAAAAAAAT
97001606 ATAATATATATA
1 ATAATATATATA
97001618 GGAAAATAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
31 10 0.27
32 17 0.46
33 10 0.27
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.36
Consensus pattern (32 bp):
ATAATATATATATAAATAACATATAAAAAAAT
Found at i:97001613 original size:17 final size:17
Alignment explanation
Indices: 97001557--97001638 Score: 66
Period size: 17 Copynumber: 4.9 Consensus size: 17
97001547 ATATATATAC
* *
97001557 ATAACATATAAAAAAAT
1 ATAATATATAATAAAAT
97001574 AATAATATATAAT-AAAT
1 -ATAATATATAATAAAAT
*
97001591 GT--TATATAATAAAAT
1 ATAATATATAATAAAAT
97001606 ATAATATAT-ATAGGAAA-
1 ATAATATATAATA--AAAT
*
97001623 ATAATATATGATAAAA
1 ATAATATATAATAAAA
97001639 GATTTTAAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
14 8 0.15
15 5 0.09
16 7 0.13
17 18 0.33
18 16 0.30
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (17 bp):
ATAATATATAATAAAAT
Found at i:97001723 original size:28 final size:28
Alignment explanation
Indices: 97001666--97001728 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 28
97001656 TGGTACTTTT
* * *
97001666 AATAATAATAAATAAATTTTATATATATA
1 AATAA-AATAAATAAAATTTAAAAATATA
97001695 AATAAAAT-AATAAAATTTAAAAATAATA
1 AATAAAATAAATAAAATTTAAAAAT-ATA
97001723 AA-AAAA
1 AATAAAA
97001729 GGGGTTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 17 0.57
28 8 0.27
29 5 0.17
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (28 bp):
AATAAAATAAATAAAATTTAAAAATATA
Found at i:97006698 original size:20 final size:20
Alignment explanation
Indices: 97006669--97006707 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
97006659 GATCTATACG
97006669 AATAAATTTAAA-TCAATTT
1 AATAAATTTAAACTCAATTT
97006688 AATACAATTTAAACTCAATT
1 AATA-AATTTAAACTCAATT
97006708 CAGTCCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 8 0.44
21 6 0.33
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAAATTTAAACTCAATTT
Found at i:97007239 original size:19 final size:19
Alignment explanation
Indices: 97007210--97007247 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
97007200 TAAATGATGA
97007210 TATTTTCATCTTT-TTTAT
1 TATTTTCATCTTTATTTAT
97007228 TATTTATCATCTTTATTTAT
1 TATTT-TCATCTTTATTTAT
97007248 CATCTTTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 8 0.44
20 5 0.28
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (19 bp):
TATTTTCATCTTTATTTAT
Found at i:97007261 original size:16 final size:13
Alignment explanation
Indices: 97007227--97007254 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
97007217 ATCTTTTTTA
97007227 TTATTTATCATCT
1 TTATTTATCATCT
97007240 TTATTTATCATCT
1 TTATTTATCATCT
97007253 TT
1 TT
97007255 CCAATTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTTATCATCT
Found at i:97011278 original size:26 final size:29
Alignment explanation
Indices: 97011213--97011278 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 29
97011203 ATGGGTGATA
97011213 AATT-TTTTAGATTTTATTTTATATATTT
1 AATTGTTTTAGATTTTATTTTATATATTT
*
97011241 AGAATGTATTTAGATTTTA-TTTAT-T-TTT
1 A-ATTGT-TTTAGATTTTATTTTATATATTT
97011269 AATTGTTTTA
1 AATTGTTTTA
97011279 CATATGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
26 4 0.12
27 4 0.12
28 5 0.15
29 3 0.09
30 6 0.18
31 11 0.33
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.64
Consensus pattern (29 bp):
AATTGTTTTAGATTTTATTTTATATATTT
Found at i:97011369 original size:22 final size:21
Alignment explanation
Indices: 97011344--97011392 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
97011334 ATTTTAGATG
97011344 TTTTTATATATTTT-TTTCTGAA
1 TTTTTATATATTTTATTTCT--A
*
97011366 TTTTTTTATATTTTATTTCTA
1 TTTTTATATATTTTATTTCTA
97011387 TTTTTA
1 TTTTTA
97011393 AGACTTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 6 0.25
22 13 0.54
23 5 0.21
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTTTATATATTTTATTTCTA
Found at i:97011415 original size:2 final size:2
Alignment explanation
Indices: 97011408--97011438 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
97011398 TTTAATGATT
97011408 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97011439 TATCAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97015261 original size:23 final size:23
Alignment explanation
Indices: 97015206--97015261 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
97015196 CGGATAAGGG
*
97015206 ACACGGGCGTGTACATTGCCTCC
1 ACACGGGCGTATACATTGCCTCC
** *
97015229 ACACAAGCGTATGCATTGCCTCC
1 ACACGGGCGTATACATTGCCTCC
97015252 ACACGGGCGT
1 ACACGGGCGT
97015262 GTGAGGCTTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.21, C:0.34, G:0.25, T:0.20
Consensus pattern (23 bp):
ACACGGGCGTATACATTGCCTCC
Found at i:97021638 original size:25 final size:25
Alignment explanation
Indices: 97021593--97021660 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
97021583 TTTCATGATC
*
97021593 TTCCTGATATTGGCTCACTTGAACTT
1 TTCCT-ATATTGGCTCACTTGAACCT
* *
97021619 TTCCTATATTGGTTCTCTTGAACCT
1 TTCCTATATTGGCTCACTTGAACCT
* *
97021644 TCCCGATATTGGCTCAC
1 TTCCTATATTGGCTCAC
97021661 ATGAGCTTCC
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
25 30 0.86
26 5 0.14
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.41
Consensus pattern (25 bp):
TTCCTATATTGGCTCACTTGAACCT
Found at i:97023219 original size:139 final size:139
Alignment explanation
Indices: 97022968--97023243 Score: 507
Period size: 139 Copynumber: 2.0 Consensus size: 139
97022958 TGATATAAAG
* *
97022968 TGTCTGTATTTGATCAATAAATTTTTGGTAATGCTCTGTGACCCTGTTTCGGCGACGGATATGGG
1 TGTCTGTATTTGATCAATAAACTTTTGGTAATGCTCTGTGACCCTGTTTCGGCAACGGATATGGG
*
97023033 TTAGGGGTGTTACAGATAATCCATTTCCTATGCATCCTGGCAAAACGAAAATGGATCGTGACTTA
66 TTAAGGGTGTTACAGATAATCCATTTCCTATGCATCCTGGCAAAACGAAAATGGATCGTGACTTA
97023098 CGGGAAAAT
131 CGGGAAAAT
97023107 TGTCTGTATTTGATCAATAAACTTTTGGTAATGCTCTGTGACCCTGTTTCGGCAACGGATATGGG
1 TGTCTGTATTTGATCAATAAACTTTTGGTAATGCTCTGTGACCCTGTTTCGGCAACGGATATGGG
* *
97023172 TTAAGGGTGTTACAGATAATCCCTTTCCTATGCATCCTGGCAGAACGAAAATGGATCGTGACTTA
66 TTAAGGGTGTTACAGATAATCCATTTCCTATGCATCCTGGCAAAACGAAAATGGATCGTGACTTA
97023237 CGGGAAA
131 CGGGAAA
97023244 TGTATTGGTG
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 132 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (139 bp):
TGTCTGTATTTGATCAATAAACTTTTGGTAATGCTCTGTGACCCTGTTTCGGCAACGGATATGGG
TTAAGGGTGTTACAGATAATCCATTTCCTATGCATCCTGGCAAAACGAAAATGGATCGTGACTTA
CGGGAAAAT
Found at i:97028089 original size:40 final size:40
Alignment explanation
Indices: 97028034--97028116 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
97028024 GGATTTACAA
*
97028034 GATATGTCATATCAAATCTAATCTAATATTTATAAGATAT
1 GATATGTCATATCAAATCTAATCTAATATTTACAAGATAT
97028074 GATATGTCATATCAAATCTAATCTAATATTTACAAGATAT
1 GATATGTCATATCAAATCTAATCTAATATTTACAAGATAT
97028114 GAT
1 GAT
97028117 CCTATCAATC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (40 bp):
GATATGTCATATCAAATCTAATCTAATATTTACAAGATAT
Found at i:97028127 original size:35 final size:36
Alignment explanation
Indices: 97028026--97028124 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 36
97028016 CATTTTAGGG
97028026 ATTTACAAGATATG-TCATATCAAATCTAATCTAAT
1 ATTTACAAGATATGATCATATCAAATCTAATCTAAT
*
97028061 ATTTATAAGATATGATATGTCATATCAAATCTAATCTAAT
1 ATTTACAAGATATG--A--TCATATCAAATCTAATCTAAT
*
97028101 ATTTACAAGATATGATCCTATCAA
1 ATTTACAAGATATGATCATATCAA
97028125 TCTTCCAAGA
Statistics
Matches: 56, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
35 13 0.23
36 8 0.14
38 1 0.02
40 34 0.61
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.37
Consensus pattern (36 bp):
ATTTACAAGATATGATCATATCAAATCTAATCTAAT
Found at i:97048330 original size:14 final size:14
Alignment explanation
Indices: 97048311--97048338 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97048301 GATTATTGAT
97048311 GCTGATGTTACCCC
1 GCTGATGTTACCCC
97048325 GCTGATGTTACCCC
1 GCTGATGTTACCCC
97048339 TTCACCTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.36, G:0.21, T:0.29
Consensus pattern (14 bp):
GCTGATGTTACCCC
Found at i:97050761 original size:69 final size:69
Alignment explanation
Indices: 97050659--97051046 Score: 404
Period size: 69 Copynumber: 5.7 Consensus size: 69
97050649 TTGCTATTGT
* * * * *
97050659 TAACTGTCTTGGAGGTTACGACTCTTCGTCTGCGAACCTTAATATTATAGCTAGGAGATTTGCTC
1 TAACTGTTTTGGAGGTTACGGCTCTTCGCCTGCGAACCTTAATATTACAGCTAGGAGCTTTGCTC
*
97050724 TTGC
66 TCGC
* * * ** * *
97050728 TAACTATTTTGGAGGTTACGGCTCTTTGCCTGCGAACCTTAATGTTACAATTGGGAGCTTTGCTA
1 TAACTGTTTTGGAGGTTACGGCTCTTCGCCTGCGAACCTTAATATTACAGCTAGGAGCTTTGCTC
*
97050793 TCAC
66 TCGC
* * *** * ** * *
97050797 TAATTGTTTTGAAGGTTGTAGCTCTTCGCTTGCGAACCTTAATACGATAG-TTGGAGCTTTGCTC
1 TAACTGTTTTGGAGGTTACGGCTCTTCGCCTGCGAACCTTAATATTACAGCTAGGAGCTTTGCTC
97050861 TCGC
66 TCGC
* * * *
97050865 TAACTG-TTTGGAAGTTGCGGCTCTTCGCCTGCAAACCTTAATATTACAGCTGGGAGCTTTGCTC
1 TAACTGTTTTGGAGGTTACGGCTCTTCGCCTGCGAACCTTAATATTACAGCTAGGAGCTTTGCTC
*
97050929 TCAC
66 TCGC
* ** * * * **
97050933 TAATTGTTTTGGAGGTTGTGGCTCTTCACCTGCAAACCTTAATGTTACAATTAGGAGCTTTGCTC
1 TAACTGTTTTGGAGGTTACGGCTCTTCGCCTGCGAACCTTAATATTACAGCTAGGAGCTTTGCTC
97050998 TCGC
66 TCGC
*
97051002 TAACTGTTTTGGAGGTTACGGCTCCTT-GCCTACGAACCTTAATAT
1 TAACTGTTTTGGAGGTTACGGCT-CTTCGCCTGCGAACCTTAATAT
97051047 CACACGAACA
Statistics
Matches: 258, Mismatches: 58, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
67 34 0.13
68 41 0.16
69 180 0.70
70 3 0.01
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (69 bp):
TAACTGTTTTGGAGGTTACGGCTCTTCGCCTGCGAACCTTAATATTACAGCTAGGAGCTTTGCTC
TCGC
Found at i:97050912 original size:136 final size:135
Alignment explanation
Indices: 97050680--97051046 Score: 457
Period size: 136 Copynumber: 2.7 Consensus size: 135
97050670 GAGGTTACGA
* * * *
97050680 CTCTTCG-TCTGCGAACCTTAATATTATAGCTAGGAGATTTGCTCTTGCTAACTATTTTGGAGGT
1 CTCTTCGCT-TGCGAACCTTAATATTATAG-TTGGAGCTTTGCTCTCGCTAACT-GTTTGGAGGT
* *
97050744 TACGGCTCTTTGCCTGCGAACCTTAATGTTACAATTGGGAGCTTTGCTATCACTAATTGTTTTGA
63 TACGGCTC-TTGCCTGCGAACCTTAATATTACAACTGGGAGCTTTGCTATCACTAATTGTTTTGA
97050809 AGGTTGTAG
127 AGGTTGTAG
** * *
97050818 CTCTTCGCTTGCGAACCTTAATACGATAGTTGGAGCTTTGCTCTCGCTAACTGTTTGGAAGTTGC
1 CTCTTCGCTTGCGAACCTTAATATTATAGTTGGAGCTTTGCTCTCGCTAACTGTTTGGAGGTTAC
* * * *
97050883 GGCTCTTCGCCTGCAAACCTTAATATTACAGCTGGGAGCTTTGCTCTCACTAATTGTTTTGGAGG
66 GGCTCTT-GCCTGCGAACCTTAATATTACAACTGGGAGCTTTGCTATCACTAATTGTTTTGAAGG
*
97050948 TTGTGG
130 TTGTAG
* * * * * *
97050954 CTCTTCACCTGCAAACCTTAATGTTACAATTAGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTT
1 CTCTTCGCTTGCGAACCTTAATATTATAGTT-GGAGCTTTGCTCTCGCTAACTG-TTTGGAGGTT
*
97051019 ACGGCTCCTTGCCTACGAACCTTAATAT
64 ACGGCT-CTTGCCTGCGAACCTTAATAT
97051047 CACACGAACA
Statistics
Matches: 197, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
135 2 0.01
136 94 0.48
137 42 0.21
138 55 0.28
139 4 0.02
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (135 bp):
CTCTTCGCTTGCGAACCTTAATATTATAGTTGGAGCTTTGCTCTCGCTAACTGTTTGGAGGTTAC
GGCTCTTGCCTGCGAACCTTAATATTACAACTGGGAGCTTTGCTATCACTAATTGTTTTGAAGGT
TGTAG
Found at i:97051040 original size:205 final size:206
Alignment explanation
Indices: 97050659--97051045 Score: 508
Period size: 205 Copynumber: 1.9 Consensus size: 206
97050649 TTGCTATTGT
* * * *
97050659 TAACTGTCTTGGAGGTTACGACTCTTCGTCTGCGAACCTTAATATTATAGCTAGGAGATTTGCTC
1 TAACTGTCTTGGAAGTTACGACTCTTCGCCTGCAAACCTTAATATTACAGCTAGGAGATTTGCTC
** ** * *
97050724 TTGCTAACTATTTTGGAGGTTACGGCTCTTTGCCTGCGAACCTTAATGTTACAATTGGGAGCTTT
66 TCACTAACTATTTTGGAGGTTACGGCTCTTCACCTGCAAACCTTAATGTTACAATTAGGAGCTTT
* ** * *
97050789 GCTATCACTAATTGTTTTGAAGGTTGTAGCTCTTCGCTTGCGAACCTTAATACGATAGTTGGAGC
131 GCTATCACTAACTGTTTTGAAGGTTACAGCTCTTCGCCTACGAACCTTAATACGATAGTTGGAGC
97050854 TTTGCTCTCGC
196 TTTGCTCTCGC
* * * *
97050865 TAACTGT-TTGGAAGTTGCGGCTCTTCGCCTGCAAACCTTAATATTACAGCTGGGAGCTTTGCTC
1 TAACTGTCTTGGAAGTTACGACTCTTCGCCTGCAAACCTTAATATTACAGCTAGGAGATTTGCTC
* * **
97050929 TCACTAATTGTTTTGGAGGTTGTGGCTCTTCACCTGCAAACCTTAATGTTACAATTAGGAGCTTT
66 TCACTAACTATTTTGGAGGTTACGGCTCTTCACCTGCAAACCTTAATGTTACAATTAGGAGCTTT
* * * *
97050994 GCTCTCGCTAACTGTTTTGGAGGTTACGGCTCCTT-GCCTACGAACCTTAATA
131 GCTATCACTAACTGTTTTGAAGGTTACAGCT-CTTCGCCTACGAACCTTAATA
97051046 TCACACGAAC
Statistics
Matches: 153, Mismatches: 27, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
205 143 0.93
206 10 0.07
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (206 bp):
TAACTGTCTTGGAAGTTACGACTCTTCGCCTGCAAACCTTAATATTACAGCTAGGAGATTTGCTC
TCACTAACTATTTTGGAGGTTACGGCTCTTCACCTGCAAACCTTAATGTTACAATTAGGAGCTTT
GCTATCACTAACTGTTTTGAAGGTTACAGCTCTTCGCCTACGAACCTTAATACGATAGTTGGAGC
TTTGCTCTCGC
Found at i:97054657 original size:43 final size:43
Alignment explanation
Indices: 97054556--97054660 Score: 176
Period size: 43 Copynumber: 2.4 Consensus size: 43
97054546 GGTTTAATGT
*
97054556 ATTGGCACTAAGTGTACGATACAATTATAGCTTCGACTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGACTAATTA
*
97054599 ATTGGCACTAAGTGTGCGATACAATTATAGTTTC-AGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGA-CTAATTA
97054642 ATTGGCACTAAGTGTGCGA
1 ATTGGCACTAAGTGTGCGA
97054661 GTTCGTTGAA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
42 1 0.02
43 58 0.98
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGACTAATTA
Found at i:97059174 original size:18 final size:18
Alignment explanation
Indices: 97059137--97059184 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
97059127 ACAAAAACCC
*
97059137 AAATTTATTTCCCGATTT
1 AAATTTATTTCCCAATTT
97059155 AAATTTATTT-CCAATATT
1 AAATTTATTTCCCAAT-TT
97059173 AATTATTTATTT
1 AA--ATTTATTT
97059185 ATTTACGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 4 0.15
18 14 0.54
20 8 0.31
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.54
Consensus pattern (18 bp):
AAATTTATTTCCCAATTT
Found at i:97069519 original size:23 final size:23
Alignment explanation
Indices: 97069459--97069523 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 23
97069449 CTGATCAGAG
97069459 TATGACACATAAAGTGCCT-AAA
1 TATGACACATAAAGTGCCTGAAA
* ** *
97069481 -ACGACACACGAGGTGCCTGAAA
1 TATGACACATAAAGTGCCTGAAA
97069503 TATGACACATAAAGTGCCTGA
1 TATGACACATAAAGTGCCTGA
97069524 TCGGTAAAGC
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
21 14 0.42
22 3 0.09
23 16 0.48
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (23 bp):
TATGACACATAAAGTGCCTGAAA
Found at i:97069919 original size:15 final size:15
Alignment explanation
Indices: 97069894--97069951 Score: 71
Period size: 15 Copynumber: 3.8 Consensus size: 15
97069884 TCATGTATAT
97069894 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
97069910 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* * * *
97069925 AACAATTTCAATCAC
1 TATAAATTCAATCAA
97069940 TATAAATTCAAT
1 TATAAATTCAAT
97069952 AAATTCATCG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
15 31 0.89
16 4 0.11
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:97071234 original size:5 final size:5
Alignment explanation
Indices: 97071221--97071267 Score: 85
Period size: 5 Copynumber: 9.2 Consensus size: 5
97071211 TTCTTTAGTT
97071221 TATATA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA T
97071268 TAAAACATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 37 0.90
6 4 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:97071303 original size:8 final size:8
Alignment explanation
Indices: 97071290--97071318 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
97071280 TATCTTTATT
97071290 ATATAATA
1 ATATAATA
97071298 ATATAATA
1 ATATAATA
97071306 ATATAATA
1 ATATAATA
97071314 ATATA
1 ATATA
97071319 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:97072961 original size:25 final size:25
Alignment explanation
Indices: 97072916--97072964 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
97072906 CCTTATAAAT
**
97072916 TTTAAATTAGGAACTCTATTAGGAC
1 TTTAAATTAGGAACTAGATTAGGAC
*
97072941 TTTAAATTAGGAATTAGATTAGGA
1 TTTAAATTAGGAACTAGATTAGGA
97072965 TTTTCCTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
TTTAAATTAGGAACTAGATTAGGAC
Found at i:97080431 original size:15 final size:15
Alignment explanation
Indices: 97080412--97080468 Score: 78
Period size: 15 Copynumber: 3.8 Consensus size: 15
97080402 ACCGCCGGAG
*
97080412 AAGAAGGAGGAGCCG
1 AAGAAGGAGGAGCCC
* *
97080427 AAGAAGGAAGAACCC
1 AAGAAGGAGGAGCCC
*
97080442 AAGAAAGAGGAGCCC
1 AAGAAGGAGGAGCCC
97080457 AAGAAGGAGGAG
1 AAGAAGGAGGAG
97080469 GAGCCGAAGA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.47, C:0.14, G:0.39, T:0.00
Consensus pattern (15 bp):
AAGAAGGAGGAGCCC
Found at i:97080431 original size:18 final size:18
Alignment explanation
Indices: 97080405--97080484 Score: 57
Period size: 18 Copynumber: 4.7 Consensus size: 18
97080395 CAGCAAAACC
*
97080405 GCCGGAGAAGAAGGAGGA
1 GCCGAAGAAGAAGGAGGA
97080423 GCCGAAGAAGGAA-GA--A
1 GCCGAAGAA-GAAGGAGGA
*
97080439 -CCCAAG-A-AA-GAGGA
1 GCCGAAGAAGAAGGAGGA
* *
97080453 GCCCAAGAAGGAGGAGGA
1 GCCGAAGAAGAAGGAGGA
97080471 GCCGAAGAAAGAAG
1 GCCGAAG-AAGAAG
97080485 AACCCAAGAA
Statistics
Matches: 49, Mismatches: 5, Indels: 15
0.71 0.07 0.22
Matches are distributed among these distances:
12 4 0.08
14 2 0.04
15 11 0.22
16 2 0.04
17 1 0.02
18 21 0.43
19 8 0.16
ACGTcount: A:0.45, C:0.15, G:0.40, T:0.00
Consensus pattern (18 bp):
GCCGAAGAAGAAGGAGGA
Found at i:97080479 original size:33 final size:33
Alignment explanation
Indices: 97080411--97080569 Score: 153
Period size: 33 Copynumber: 4.8 Consensus size: 33
97080401 AACCGCCGGA
* *
97080411 GAAGAAGGAGGAGCCGAAGAAGGAAGA--A-CC
1 GAAGAAAGAGGAGCCCAAGAAGGAAGAGGAGCC
* *
97080441 CAAGAAAGAGGAGCCCAAGAAGGAGGAGGAGCC
1 GAAGAAAGAGGAGCCCAAGAAGGAAGAGGAGCC
* *
97080474 GAAGAAAGAAGAACCCAAGAAGGAAGAGGAGCC
1 GAAGAAAGAGGAGCCCAAGAAGGAAGAGGAGCC
* * * *
97080507 AAAGAAAGAAGAACCCAAGAAGGAAGAGGAACCC
1 GAAGAAAGAGGAGCCCAAGAAGGAAGAGG-AGCC
* * *
97080541 AAGAAGGAAGAGGAGCCAAAGAAAGAAGA
1 --GAAGAAAGAGGAGCCCAAGAAGGAAGA
97080570 AGAGAAACAA
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
30 23 0.21
32 1 0.01
33 59 0.55
34 3 0.03
36 21 0.20
ACGTcount: A:0.51, C:0.14, G:0.35, T:0.00
Consensus pattern (33 bp):
GAAGAAAGAGGAGCCCAAGAAGGAAGAGGAGCC
Found at i:97080495 original size:18 final size:18
Alignment explanation
Indices: 97080474--97080572 Score: 96
Period size: 18 Copynumber: 5.7 Consensus size: 18
97080464 AGGAGGAGCC
*
97080474 GAAGAAAGAAGAACCCAA
1 GAAGGAAGAAGAACCCAA
* *
97080492 GAAGGAAG-AGGAGCC-A
1 GAAGGAAGAAGAACCCAA
*
97080508 -AAGAAAGAAGAACCCAA
1 GAAGGAAGAAGAACCCAA
*
97080525 GAAGGAAGAGGAACCCAA
1 GAAGGAAGAAGAACCCAA
* * *
97080543 GAAGGAAGAGGAGCCAAA
1 GAAGGAAGAAGAACCCAA
*
97080561 GAAAGAAGAAGA
1 GAAGGAAGAAGA
97080573 GAAACAACCA
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
15 6 0.09
16 6 0.09
17 6 0.09
18 48 0.73
ACGTcount: A:0.56, C:0.13, G:0.31, T:0.00
Consensus pattern (18 bp):
GAAGGAAGAAGAACCCAA
Found at i:97080506 original size:51 final size:50
Alignment explanation
Indices: 97080410--97080563 Score: 181
Period size: 51 Copynumber: 3.1 Consensus size: 50
97080400 AAACCGCCGG
* *
97080410 AGAAGAAGGAGGAGCCGAAGAAGGAAGAACCCAAG-A--AAGAGGAGCCCA
1 AGAAG-AGGAGGAGCCGAAGAAAGAAGAACCCAAGAAGGAAGAGGAGCCAA
97080458 AGAAGGAGGAGGAGCCGAAGAAAGAAGAACCCAAGAAGGAAGAGGAGCCAA
1 AGAA-GAGGAGGAGCCGAAGAAAGAAGAACCCAAGAAGGAAGAGGAGCCAA
* * * * *
97080509 AGAA-AGAAGAACCCAAGAAGGAAGAGGAACCCAAGAAGGAAGAGGAGCCAA
1 AGAAGAGGAGGAGCC--GAAGAAAGAAGAACCCAAGAAGGAAGAGGAGCCAA
97080560 AGAA
1 AGAA
97080564 AGAAGAAGAG
Statistics
Matches: 93, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
48 32 0.34
49 9 0.10
51 52 0.56
ACGTcount: A:0.51, C:0.15, G:0.34, T:0.00
Consensus pattern (50 bp):
AGAAGAGGAGGAGCCGAAGAAAGAAGAACCCAAGAAGGAAGAGGAGCCAA
Found at i:97085651 original size:17 final size:17
Alignment explanation
Indices: 97085629--97085685 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
97085619 TGTCATCCAA
97085629 CTCGCCACATTCGCTAG
1 CTCGCCACATTCGCTAG
* *
97085646 CTCGCCACTCCACTC-CCAG
1 CTCGCCA---CATTCGCTAG
*
97085665 CTCGCCACCTTCGCTAG
1 CTCGCCACATTCGCTAG
97085682 CTCG
1 CTCG
97085686 TCATTCCGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
16 3 0.10
17 14 0.45
19 10 0.32
20 4 0.13
ACGTcount: A:0.14, C:0.49, G:0.16, T:0.21
Consensus pattern (17 bp):
CTCGCCACATTCGCTAG
Found at i:97085678 original size:36 final size:36
Alignment explanation
Indices: 97085629--97085712 Score: 114
Period size: 36 Copynumber: 2.3 Consensus size: 36
97085619 TGTCATCCAA
97085629 CTCGCCACATTCGCTAGCTCGCCACTCCACTCCCAG
1 CTCGCCACATTCGCTAGCTCGCCACTCCACTCCCAG
* * * * *
97085665 CTCGCCACCTTCGCTAGCTCGTCATTCCGCTTCCAG
1 CTCGCCACATTCGCTAGCTCGCCACTCCACTCCCAG
*
97085701 CTTGCCACATTC
1 CTCGCCACATTC
97085713 ATTAGTTCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.14, C:0.46, G:0.14, T:0.25
Consensus pattern (36 bp):
CTCGCCACATTCGCTAGCTCGCCACTCCACTCCCAG
Found at i:97087344 original size:46 final size:46
Alignment explanation
Indices: 97087269--97087450 Score: 233
Period size: 46 Copynumber: 4.0 Consensus size: 46
97087259 TTATCTTCGA
* * * *
97087269 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTC-ATTTCATGT
*
97087315 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
** * * *
97087361 CACATTGCCATGATATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
*
97087407 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAT-ATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCAT
97087451 TTCAGAGAGC
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
45 4 0.03
46 115 0.97
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:97087856 original size:24 final size:23
Alignment explanation
Indices: 97087829--97087955 Score: 62
Period size: 23 Copynumber: 5.4 Consensus size: 23
97087819 ATTAGGTAGT
*
97087829 TCACAAAGAACCATATCGTGAAGC
1 TCACAAAGAACC-TATCGGGAAGC
* *
97087853 TCACGAAGAGCCTATCGGGAAGC
1 TCACAAAGAACCTATCGGGAAGC
* * * ** *
97087876 TTCAGATAGCCATATATCGGGAAGT
1 -TCACAAAG-AACCTATCGGGAAGC
* *
97087901 TCA-AGCAAGCA-CTATC-AGAAGGC
1 TCACA--AAGAACCTATCGGGAA-GC
*
97087924 TCACAAAGAGCCTATCGGGAAGC
1 TCACAAAGAACCTATCGGGAAGC
*
97087947 TCACGAAGA
1 TCACAAAGA
97087956 GCTGTATTTC
Statistics
Matches: 76, Mismatches: 19, Indels: 17
0.68 0.17 0.15
Matches are distributed among these distances:
22 6 0.08
23 34 0.45
24 24 0.32
25 12 0.16
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.17
Consensus pattern (23 bp):
TCACAAAGAACCTATCGGGAAGC
Found at i:97087874 original size:23 final size:23
Alignment explanation
Indices: 97087842--97087957 Score: 87
Period size: 23 Copynumber: 5.0 Consensus size: 23
97087832 CAAAGAACCA
*
97087842 TATCGTGAAGCTCACGAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
*
97087865 TATCGGGAAGCTTCA-G-ATAGCC
1 TATCGGGAAGC-TCACGAAGAGCC
* * *
97087887 ATATATCGGGAAGTTCAAGCA-AGCAC
1 ---TATCGGGAAGCTCACGAAGAGC-C
* *
97087913 TATC-AGAAGGCTCACAAAGAGCC
1 TATCGGGAA-GCTCACGAAGAGCC
97087936 TATCGGGAAGCTCACGAAGAGC
1 TATCGGGAAGCTCACGAAGAGC
97087958 TGTATTTCGG
Statistics
Matches: 73, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
22 8 0.11
23 37 0.51
24 12 0.16
25 14 0.19
26 2 0.03
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.17
Consensus pattern (23 bp):
TATCGGGAAGCTCACGAAGAGCC
Found at i:97091614 original size:29 final size:29
Alignment explanation
Indices: 97091581--97091637 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
97091571 ATGAAATTGG
* *
97091581 CACGATTTTCTCCTTCCTTCAATTCGCTC
1 CACGATTTTCTCCTTCCATAAATTCGCTC
*
97091610 CACGATTTTCTTCTTCCATAAATTCGCT
1 CACGATTTTCTCCTTCCATAAATTCGCT
97091638 ACTTACAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.18, C:0.33, G:0.07, T:0.42
Consensus pattern (29 bp):
CACGATTTTCTCCTTCCATAAATTCGCTC
Found at i:97091804 original size:48 final size:48
Alignment explanation
Indices: 97091727--97091820 Score: 116
Period size: 48 Copynumber: 2.0 Consensus size: 48
97091717 TACTTTTAAA
** *
97091727 ATTTTCTGAATCTTGTGGCTCATCAATTTAAGATCACAGCCTTATAAG
1 ATTTTCTGAATCTTGTAACTCACCAATTTAAGATCACAGCCTTATAAG
* * * **
97091775 ATTTTTTGAATCTTGTAACTCACCGATTTAATATCGTAGCCTTATA
1 ATTTTCTGAATCTTGTAACTCACCAATTTAAGATCACAGCCTTATA
97091821 CTTAAAAGAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (48 bp):
ATTTTCTGAATCTTGTAACTCACCAATTTAAGATCACAGCCTTATAAG
Found at i:97092139 original size:23 final size:23
Alignment explanation
Indices: 97092091--97092164 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 23
97092081 TAGTCCACAG
* *
97092091 TATTTTT-CAACACTGTTCGCAT
1 TATTTTTACAACACAGTTCGCAA
* *
97092113 TATTTTTACAATACAGTTTGCAA
1 TATTTTTACAACACAGTTCGCAA
* * * * *
97092136 TATTTTGACAAAATAGCTCGCAG
1 TATTTTTACAACACAGTTCGCAA
97092159 TATTTT
1 TATTTT
97092165 GCAGTACTAA
Statistics
Matches: 41, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
22 7 0.17
23 34 0.83
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (23 bp):
TATTTTTACAACACAGTTCGCAA
Found at i:97092256 original size:23 final size:23
Alignment explanation
Indices: 97092197--97092244 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
97092187 TAAAGCATAA
* **
97092197 CTCGTTGAATTTTCATTGTATAG
1 CTCGCTGAATTTTTGTTGTATAG
97092220 CTCGCTGAATTTTTGTTGTATAG
1 CTCGCTGAATTTTTGTTGTATAG
97092243 CT
1 CT
97092245 TGTCTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.19, C:0.15, G:0.19, T:0.48
Consensus pattern (23 bp):
CTCGCTGAATTTTTGTTGTATAG
Found at i:97092628 original size:16 final size:17
Alignment explanation
Indices: 97092603--97092636 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
97092593 CATCTTTGCT
97092603 AGCTTGCCACTC-TGCA
1 AGCTTGCCACTCATGCA
*
97092619 AGCTTTCCACTCATGCA
1 AGCTTGCCACTCATGCA
97092636 A
1 A
97092637 ACTGTGCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.24, C:0.35, G:0.15, T:0.26
Consensus pattern (17 bp):
AGCTTGCCACTCATGCA
Found at i:97095872 original size:27 final size:27
Alignment explanation
Indices: 97095819--97095877 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
97095809 ACAATTACTT
*
97095819 AATATTATTTATTTAATTTGTTGAAAA
1 AATATTATTTATTTAATTTGATGAAAA
97095846 AATATT-TTTATTTAATTTAGAAT-AAAA
1 AATATTATTTATTTAATTT-G-ATGAAAA
97095873 AATAT
1 AATAT
97095878 ATGCTAGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 12 0.41
27 16 0.55
28 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (27 bp):
AATATTATTTATTTAATTTGATGAAAA
Found at i:97102596 original size:19 final size:21
Alignment explanation
Indices: 97102562--97102600 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
97102552 TTCAATAATT
97102562 ATTAAATAAAATTTTAAAATC
1 ATTAAATAAAATTTTAAAATC
97102583 ATTAAA-AAAA-TTTAAAAT
1 ATTAAATAAAATTTTAAAAT
97102601 TAAATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
20 4 0.22
21 6 0.33
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (21 bp):
ATTAAATAAAATTTTAAAATC
Found at i:97104665 original size:17 final size:17
Alignment explanation
Indices: 97104643--97104675 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
97104633 ATCCGACAAA
97104643 GCCCGATAAATGATAAT
1 GCCCGATAAATGATAAT
*
97104660 GCCCGATACATGATAA
1 GCCCGATAAATGATAA
97104676 ATGATAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:97111280 original size:10 final size:9
Alignment explanation
Indices: 97111235--97111282 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
97111225 AGGTGTCAAT
97111235 ATTTTAAAAA
1 ATTTT-AAAA
*
97111245 AATTTAAAA
1 ATTTTAAAA
*
97111254 ATCTT-AAA
1 ATTTTAAAA
97111262 ATTTTAAAA
1 ATTTTAAAA
97111271 ATTATTAAAA
1 ATT-TTAAAA
97111281 AT
1 AT
97111283 AACATCCAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 7 0.22
9 13 0.41
10 12 0.38
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:97111707 original size:21 final size:21
Alignment explanation
Indices: 97111666--97111707 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
97111656 ATAACTTTTA
*
97111666 AATAATTTTCTAAAATTATTT
1 AATAATTTTCTAAAATAATTT
*
97111687 AATAATTATTTTAAAA-AATTT
1 AATAATT-TTCTAAAATAATTT
97111708 CCAGGATGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
AATAATTTTCTAAAATAATTT
Found at i:97119791 original size:6 final size:6
Alignment explanation
Indices: 97119775--97119805 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
97119765 AAAGGCAACA
97119775 AAGAGTG AAGATG AAGATG AAGATG AAGATG
1 AAGA-TG AAGATG AAGATG AAGATG AAGATG
97119806 CATTACAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.35, T:0.16
Consensus pattern (6 bp):
AAGATG
Found at i:97123084 original size:40 final size:40
Alignment explanation
Indices: 97123040--97123262 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
97123030 TACTTGCTCG
* *
97123040 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
97123080 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
97123120 AATGCCTTTGGGACTTAGCCCGGATATATTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
97123160 AATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * * *
97123200 AATGCCTTCGGGACTTAGCTCGGA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
97123240 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
97123263 TTATCATCCA
Statistics
Matches: 169, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 168 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:97125649 original size:3 final size:3
Alignment explanation
Indices: 97125626--97125711 Score: 95
Period size: 3 Copynumber: 29.0 Consensus size: 3
97125616 GGTTTGAAAA
* * * *
97125626 AAG AAA AAG AAT AAA AAG AAG AAG AAG ATG AA- AAG AAG CAAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG -AAG AAG
* *
97125671 -AG AAA AAG AAG GAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
97125712 GATAAGAGAA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
2 4 0.06
3 62 0.90
4 3 0.04
ACGTcount: A:0.67, C:0.01, G:0.29, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:97126849 original size:21 final size:21
Alignment explanation
Indices: 97126816--97126863 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
97126806 GTTGGGGCAC
* *
97126816 CTTGTTGAGTTGGGGAACCCT
1 CTTGCTGACTTGGGGAACCCT
* *
97126837 CTTGCTGACTTGGGGTAGCCT
1 CTTGCTGACTTGGGGAACCCT
97126858 CTTGCT
1 CTTGCT
97126864 AGGTTCGGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.10, C:0.23, G:0.31, T:0.35
Consensus pattern (21 bp):
CTTGCTGACTTGGGGAACCCT
Found at i:97127619 original size:43 final size:43
Alignment explanation
Indices: 97127525--97127701 Score: 263
Period size: 43 Copynumber: 4.2 Consensus size: 43
97127515 TAAAAAAAAC
* *
97127525 TCATTGCATGCATATTAAAAAATAGGCAACA-C--ACCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
97127565 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
* *
97127608 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAATAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
* *
97127651 TCATTGCATACATATTAAAAAA-AGTCAATAGCTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
*
97127693 TCACTGCAT
1 TCATTGCAT
97127702 ATGATCAGCA
Statistics
Matches: 125, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
40 30 0.24
41 1 0.01
42 25 0.20
43 69 0.55
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (43 bp):
TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
Found at i:97127621 original size:83 final size:84
Alignment explanation
Indices: 97127525--97127701 Score: 268
Period size: 83 Copynumber: 2.1 Consensus size: 84
97127515 TAAAAAAAAC
*
97127525 TCATTGCATGCATATTAAAAAATAGGCAAC-AC-ACCAACAATCATTGCATGCATATTAAAAAAT
1 TCATTGCATGCATATTAAAAAATAGGCAACAACTACCAACAATCATTGCATACATATTAAAAAA-
97127588 AGTCAACAGCTTTCCAACAA
65 AGTCAACAGCTTTCCAACAA
* * *
97127608 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAATAATCATTGCATACATATTAAAAAA
1 TCATTGCATGCATATTAAAAAATAGGCAACAAC-TACCAACAATCATTGCATACATATTAAAAAA
*
97127673 AGTCAATAGCTTTCCAACAA
65 AGTCAACAGCTTTCCAACAA
*
97127693 TCACTGCAT
1 TCATTGCAT
97127702 ATGATCAGCA
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
83 29 0.34
84 2 0.02
85 27 0.32
86 27 0.32
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (84 bp):
TCATTGCATGCATATTAAAAAATAGGCAACAACTACCAACAATCATTGCATACATATTAAAAAAA
GTCAACAGCTTTCCAACAA
Found at i:97127701 original size:85 final size:83
Alignment explanation
Indices: 97127529--97127701 Score: 258
Period size: 85 Copynumber: 2.1 Consensus size: 83
97127519 AAAAACTCAT
*
97127529 TGCATGCATATTAAAAAATAGGCAACACACCAACAATCATTGCATGCATATTAAAAAATAGTCAA
1 TGCATGCATATTAAAAAATAGGCAACACACCAACAATCATTGCATACATATTAAAAAATAGTCAA
*
97127594 CAGCTTTCCAACAATCAT
66 CAGCTTTCCAACAATCAC
* * *
97127612 TGCATGCATATTAAAAAATAGTCAACAACTTTCCAATAATCATTGCATACATATTAAAAAA-AGT
1 TGCATGCATATTAAAAAATAGGCAAC-AC--ACCAACAATCATTGCATACATATTAAAAAATAGT
*
97127676 CAATAGCTTTCCAACAATCAC
63 CAACAGCTTTCCAACAATCAC
97127697 TGCAT
1 TGCAT
97127702 ATGATCAGCA
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
83 25 0.31
84 2 0.02
85 27 0.33
86 27 0.33
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.27
Consensus pattern (83 bp):
TGCATGCATATTAAAAAATAGGCAACACACCAACAATCATTGCATACATATTAAAAAATAGTCAA
CAGCTTTCCAACAATCAC
Found at i:97129365 original size:15 final size:13
Alignment explanation
Indices: 97129344--97129387 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 13
97129334 ATGCATTACT
97129344 ATCACTACCAGAC
1 ATCACTACCAGAC
97129357 GATTCACTACCAGGCAC
1 -A-TCACTACCA-G-AC
97129374 ATCACTACCAGAC
1 ATCACTACCAGAC
97129387 A
1 A
97129388 CGTTTTCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 3 0.11
14 2 0.07
15 18 0.67
16 2 0.07
17 2 0.07
ACGTcount: A:0.36, C:0.36, G:0.11, T:0.16
Consensus pattern (13 bp):
ATCACTACCAGAC
Found at i:97129792 original size:46 final size:46
Alignment explanation
Indices: 97129682--97129784 Score: 188
Period size: 46 Copynumber: 2.2 Consensus size: 46
97129672 GGATACAAAC
*
97129682 AATGACAGATATACACAATAAACATCAGTTTAATAATGTATAATTT
1 AATGACAGATATACACAATAAACATCAGTTTAATAATATATAATTT
*
97129728 AATGGCAGATATACACAATAAACATCAGTTTAATAATATATAATTT
1 AATGACAGATATACACAATAAACATCAGTTTAATAATATATAATTT
97129774 AATGACAGATA
1 AATGACAGATA
97129785 CAAACAATGG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.49, C:0.11, G:0.10, T:0.31
Consensus pattern (46 bp):
AATGACAGATATACACAATAAACATCAGTTTAATAATATATAATTT
Found at i:97129795 original size:62 final size:62
Alignment explanation
Indices: 97129728--97130264 Score: 772
Period size: 62 Copynumber: 8.6 Consensus size: 62
97129718 TGTATAATTT
97129728 AATGGCAGATATACACAATAAACATCAGTTTAATAATATATAATTTAATGACAGATACAAAC
1 AATGGCAGATATACACAATAAACATCAGTTTAATAATATATAATTTAATGACAGATACAAAC
* *
97129790 AATGGCAGATATACACAATAAACATCAGTTTAATAATGTATAATTTAATGGCAGATACAAAC
1 AATGGCAGATATACACAATAAACATCAGTTTAATAATATATAATTTAATGACAGATACAAAC
97129852 AATGGCAGATATACACAATAAACATCAGTTTAATAATATATAATTTAATGACAGATACAAAC
1 AATGGCAGATATACACAATAAACATCAGTTTAATAATATATAATTTAATGACAGATACAAAC
* *
97129914 AATGGCAGATATACACAATAAACATCAGTTTAATAATGTATAATTTAATGGCAGATACAAAC
1 AATGGCAGATATACACAATAAACATCAGTTTAATAATATATAATTTAATGACAGATACAAAC
* * *
97129976 AATGGCAGATATACACAATAAACATCAGTGTAATAATGTATAATTTAATGGCAGATACAAAC
1 AATGGCAGATATACACAATAAACATCAGTTTAATAATATATAATTTAATGACAGATACAAAC
* * *
97130038 AATTGCAGATATACACAATAAACATCAGTTTAATAATGTATAATTTAATGGCAGATACAAAC
1 AATGGCAGATATACACAATAAACATCAGTTTAATAATATATAATTTAATGACAGATACAAAC
* * * * * **
97130100 AATGGTAGATATACACAATAAACATCAATTTGATAATGACATTTATACAATGGA-AGATACAAAC
1 AATGGCAGATATACACAATAAACATCAGTTTAATAAT-ATA-TAATTTAAT-GACAGATACAAAC
* * * * **
97130164 AATGGCAGATATACACAATAAAGATCAATTTGATAATGGCAT-TCATACAATGACAGATACAAAC
1 AATGGCAGATATACACAATAAACATCAGTTTAATAAT---ATATAATTTAATGACAGATACAAAC
* * *
97130228 AATGGCAGATACACACAATAAAAATCAGTTTGATAAT
1 AATGGCAGATATACACAATAAACATCAGTTTAATAAT
97130265 GGCATTCATA
Statistics
Matches: 442, Mismatches: 27, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
62 334 0.76
63 3 0.01
64 103 0.23
65 1 0.00
66 1 0.00
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.27
Consensus pattern (62 bp):
AATGGCAGATATACACAATAAACATCAGTTTAATAATATATAATTTAATGACAGATACAAAC
Found at i:97130203 original size:34 final size:34
Alignment explanation
Indices: 97130100--97130204 Score: 87
Period size: 32 Copynumber: 3.2 Consensus size: 34
97130090 AGATACAAAC
* *
97130100 AATGGTAGATATACACAATAAACATCAATTTGAT
1 AATGGCAGATATACACAATAAAGATCAATTTGAT
* * * * *
97130134 AAT-G-ACATTTATACAATGGAAGATACAA----AC
1 AATGGCAGATATACACAAT-AAAGAT-CAATTTGAT
97130164 AATGGCAGATATACACAATAAAGATCAATTTGAT
1 AATGGCAGATATACACAATAAAGATCAATTTGAT
97130198 AATGGCA
1 AATGGCA
97130205 TTCATACAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 16
0.66 0.14 0.20
Matches are distributed among these distances:
30 7 0.13
31 6 0.12
32 20 0.38
33 5 0.10
34 14 0.27
ACGTcount: A:0.48, C:0.12, G:0.14, T:0.26
Consensus pattern (34 bp):
AATGGCAGATATACACAATAAAGATCAATTTGAT
Found at i:97130231 original size:16 final size:16
Alignment explanation
Indices: 97130210--97130246 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
97130200 TGGCATTCAT
97130210 ACAATGACAGATACAA
1 ACAATGACAGATACAA
* *
97130226 ACAATGGCAGATACAC
1 ACAATGACAGATACAA
97130242 ACAAT
1 ACAAT
97130247 AAAAATCAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.22, G:0.14, T:0.14
Consensus pattern (16 bp):
ACAATGACAGATACAA
Found at i:97130446 original size:12 final size:12
Alignment explanation
Indices: 97130429--97130468 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
97130419 CGAAAAAACC
97130429 CTAAATCAAAAT
1 CTAAATCAAAAT
*
97130441 CTAAATCGAAAT
1 CTAAATCAAAAT
* *
97130453 CAAAATCAAATT
1 CTAAATCAAAAT
97130465 CTAA
1 CTAA
97130469 TCCTAGATCG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.55, C:0.17, G:0.03, T:0.25
Consensus pattern (12 bp):
CTAAATCAAAAT
Found at i:97130560 original size:24 final size:24
Alignment explanation
Indices: 97130533--97130585 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
97130523 GAGTGTTTCA
* * *
97130533 AAATTGTAATCAAAATCGAAATAG
1 AAATTGAAAGCAAAATCAAAATAG
* *
97130557 AAATCGAAAGCAAAATCAAAATGG
1 AAATTGAAAGCAAAATCAAAATAG
97130581 AAATT
1 AAATT
97130586 AAATTTGAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.21
Consensus pattern (24 bp):
AAATTGAAAGCAAAATCAAAATAG
Found at i:97131889 original size:32 final size:32
Alignment explanation
Indices: 97131824--97131886 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
97131814 GTAAGAGTTA
* *
97131824 ATTTCATTTTTTTAATATTATTTAATATTTTT
1 ATTTCATTTTTGTAATATTAATTAATATTTTT
*
97131856 ATTTTATTTTTGTAATA-TAATTAATATTTTT
1 ATTTCATTTTTGTAATATTAATTAATATTTTT
97131887 TATAATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (32 bp):
ATTTCATTTTTGTAATATTAATTAATATTTTT
Found at i:97131897 original size:31 final size:30
Alignment explanation
Indices: 97131829--97131899 Score: 81
Period size: 32 Copynumber: 2.3 Consensus size: 30
97131819 AGTTAATTTC
* *
97131829 ATTTTTTTAATATTATTTAATATTTTTATTTT
1 ATTTTTTTAATATTAATTAATATTTTTA--TA
*
97131861 ATTTTTGTAATA-TAATTAATATTTTTTATA
1 ATTTTTTTAATATTAATTAATA-TTTTTATA
97131891 ATTTTTTTA
1 ATTTTTTTA
97131900 TTACAGTCGG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
30 9 0.26
31 8 0.24
32 17 0.50
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (30 bp):
ATTTTTTTAATATTAATTAATATTTTTATA
Found at i:97131898 original size:32 final size:30
Alignment explanation
Indices: 97131830--97131899 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
97131820 GTTAATTTCA
* *
97131830 TTTTTTTAATATTATTTAATATTTTTATTT
1 TTTTTTTAATATTAATTAATATTTTTATAT
*
97131860 TATTTTTGTAATA-TAATTAATATTTTTTATAA
1 T-TTTTT-TAATATTAATTAATA-TTTTTATAT
97131892 TTTTTTTA
1 TTTTTTTA
97131900 TTACAGTCGG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
30 3 0.09
31 18 0.53
32 13 0.38
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (30 bp):
TTTTTTTAATATTAATTAATATTTTTATAT
Found at i:97133937 original size:59 final size:59
Alignment explanation
Indices: 97133835--97133951 Score: 191
Period size: 59 Copynumber: 2.0 Consensus size: 59
97133825 ATTGATTTAT
*
97133835 TTTTTAATATTTTTGTACAAATTATTTTTATATTATCTTATTTAATAAAATAGAAGTTC
1 TTTTGAATATTTTTGTACAAATTATTTTTATATTATCTTATTTAATAAAATAGAAGTTC
* *
97133894 TTTTGAATATTTTTGTACAAATTATTTTTATATTGT-TTCATTTAATAAATTAGAAGTT
1 TTTTGAATATTTTTGTACAAATTATTTTTATATTATCTT-ATTTAATAAAATAGAAGTT
97133952 ATTTCGATGT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
58 2 0.04
59 52 0.96
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.55
Consensus pattern (59 bp):
TTTTGAATATTTTTGTACAAATTATTTTTATATTATCTTATTTAATAAAATAGAAGTTC
Found at i:97136870 original size:23 final size:22
Alignment explanation
Indices: 97136838--97136880 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
97136828 AGATCTTTCC
97136838 TAAATTTATCACTAAATAATCT
1 TAAATTTATCACTAAATAATCT
97136860 TAAATATTATCACTAAATAAT
1 TAAAT-TTATCACTAAATAAT
97136881 TCAAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAATTTATCACTAAATAATCT
Found at i:97136887 original size:23 final size:22
Alignment explanation
Indices: 97136839--97136890 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 22
97136829 GATCTTTCCT
*
97136839 AAATTTATCACTAAATAATCTT
1 AAATTTATCACTAAATAATCTA
97136861 AAATATTATCACTAAATAAT-TCA
1 AAAT-TTATCACTAAATAATCT-A
97136884 AAATTTA
1 AAATTTA
97136891 AAAATCAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 8 0.30
23 19 0.70
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (22 bp):
AAATTTATCACTAAATAATCTA
Found at i:97142072 original size:29 final size:29
Alignment explanation
Indices: 97142027--97142096 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
97142017 AATCTATTTC
*
97142027 GTCAAA-TAATTTTTTCAGAACACATCAT
1 GTCAAATTTATTTTTTCAGAACACATCAT
* * * * *
97142055 GTGAAATTTATTTTTTCATATCCCATCTT
1 GTCAAATTTATTTTTTCAGAACACATCAT
97142084 GTCAAATTTATTT
1 GTCAAATTTATTT
97142097 CTTCCAAAAC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 5 0.15
29 29 0.85
ACGTcount: A:0.31, C:0.16, G:0.07, T:0.46
Consensus pattern (29 bp):
GTCAAATTTATTTTTTCAGAACACATCAT
Found at i:97149736 original size:43 final size:44
Alignment explanation
Indices: 97149685--97149784 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 44
97149675 AATCGTCGTA
* *
97149685 AAAGATCATGTTCTT-TAACGACGTTTGTAGTAAAAGCGCCGCT
1 AAAGATCATGTTCTTATAACGACATTCGTAGTAAAAGCGCCGCT
** *
97149728 AAAGATCATGTT-TTATAGTGGCATTCGTAGTAAAAGCGCCGCT
1 AAAGATCATGTTCTTATAACGACATTCGTAGTAAAAGCGCCGCT
*
97149771 AAAGAACATGTTCT
1 AAAGATCATGTTCT
97149785 ATAGCAGCGT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
42 2 0.04
43 46 0.94
44 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (44 bp):
AAAGATCATGTTCTTATAACGACATTCGTAGTAAAAGCGCCGCT
Found at i:97150150 original size:21 final size:21
Alignment explanation
Indices: 97150107--97150157 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
97150097 CATATTTTCT
* *
97150107 TGTTGCCTCTGCTGCTCTTGC
1 TGTTGCCTCTGCTGCCCTCGC
*
97150128 TGTTGCCTCTGCTTCCCTCGC
1 TGTTGCCTCTGCTGCCCTCGC
*
97150149 TGCTGCCTC
1 TGTTGCCTC
97150158 CACTTTAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.39, G:0.22, T:0.39
Consensus pattern (21 bp):
TGTTGCCTCTGCTGCCCTCGC
Found at i:97151658 original size:29 final size:27
Alignment explanation
Indices: 97151616--97151670 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
97151606 TTCGAATACA
*
97151616 ATAGCAAAAAAATATACACAAAAAAATCG
1 ATAGC-AAAAAA-ATACAAAAAAAAATCG
**
97151645 ATAGCAATCAAATACAAAAAAAAATC
1 ATAGCAAAAAAATACAAAAAAAAATC
97151671 AAATACATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 14 0.61
28 4 0.17
29 5 0.22
ACGTcount: A:0.65, C:0.15, G:0.05, T:0.15
Consensus pattern (27 bp):
ATAGCAAAAAAATACAAAAAAAAATCG
Found at i:97161305 original size:12 final size:12
Alignment explanation
Indices: 97161285--97161315 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
97161275 CTTCTCTGAA
97161285 GCCTCTACCTCG
1 GCCTCTACCTCG
*
97161297 GCGTCTACCTCG
1 GCCTCTACCTCG
97161309 GCCTCTA
1 GCCTCTA
97161316 GTACCCGTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.45, G:0.19, T:0.26
Consensus pattern (12 bp):
GCCTCTACCTCG
Found at i:97162912 original size:17 final size:18
Alignment explanation
Indices: 97162876--97162913 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
97162866 AAAATGAGCT
97162876 CACACGCCCATGTGGGCC
1 CACACGCCCATGTGGGCC
* *
97162894 CACACGTCCGTGT-GGCC
1 CACACGCCCATGTGGGCC
97162911 CAC
1 CAC
97162914 TCGGCCCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.16, C:0.45, G:0.26, T:0.13
Consensus pattern (18 bp):
CACACGCCCATGTGGGCC
Found at i:97164138 original size:3 final size:3
Alignment explanation
Indices: 97164124--97164170 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
97164114 CGACAGAGGA
*
97164124 AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
97164171 AACGTGAGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:97172980 original size:5 final size:5
Alignment explanation
Indices: 97172970--97172997 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
97172960 CCAATTTGTG
97172970 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
97172998 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:97176328 original size:22 final size:24
Alignment explanation
Indices: 97176276--97176329 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 24
97176266 TTTTTTATGA
* *
97176276 TTAAATTGTTGTTATTAAATATGTT
1 TTAAATTATTGTTATT-AATATCTT
*
97176301 TGAAATTATTG-TATT-ATATCTT
1 TTAAATTATTGTTATTAATATCTT
97176323 TTAAATT
1 TTAAATT
97176330 GAATTTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 12 0.48
24 4 0.16
25 9 0.36
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.56
Consensus pattern (24 bp):
TTAAATTATTGTTATTAATATCTT
Found at i:97182680 original size:9 final size:9
Alignment explanation
Indices: 97182647--97182701 Score: 51
Period size: 9 Copynumber: 6.1 Consensus size: 9
97182637 CAAATCCAAC
*
97182647 TCTCTCTAT
1 TCTCTCAAT
97182656 TCTCTCTAA-
1 TCTCTC-AAT
*
97182665 ACTCTCAAT
1 TCTCTCAAT
*
97182674 TCTCTCAAC
1 TCTCTCAAT
97182683 TCTCTCAAAT
1 TCTCTC-AAT
97182693 T-TCTCAAT
1 TCTCTCAAT
97182701 T
1 T
97182702 TTTGTTCAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
8 6 0.16
9 28 0.74
10 4 0.11
ACGTcount: A:0.24, C:0.33, G:0.00, T:0.44
Consensus pattern (9 bp):
TCTCTCAAT
Found at i:97182687 original size:18 final size:18
Alignment explanation
Indices: 97182643--97182699 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
97182633 CACTCAAATC
*
97182643 CAACTCTCTCTATTCTCT
1 CAACTCTCTCAATTCTCT
*
97182661 CTAA-ACTCTCAATTCTCT
1 C-AACTCTCTCAATTCTCT
97182679 CAACTCTCTCAAATT-TCT
1 CAACTCTCTC-AATTCTCT
97182697 CAA
1 CAA
97182700 TTTTTGTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.06
18 25 0.76
19 6 0.18
ACGTcount: A:0.26, C:0.35, G:0.00, T:0.39
Consensus pattern (18 bp):
CAACTCTCTCAATTCTCT
Found at i:97185626 original size:129 final size:131
Alignment explanation
Indices: 97185462--97185696 Score: 323
Period size: 131 Copynumber: 1.8 Consensus size: 131
97185452 GAAAGTTTTC
* ** * *
97185462 AAAATAAAGGTAATATTTCGTATTTAAAACTTCGAGAA-GTCGTACTCTAACTTACGGGG-TTTC
1 AAAATAAAGGCAATATTTCACATTCAAAACTTCGAGAAGGTCGTACCCTAACTTACGGGGTTTTC
*
97185525 AATTTTCTCGTTGAACCTAAATAACCAAATATCCTTTTAAATTTTAAAATATATGAACTTTAAAT
66 AATTTTCTCGTTGAACCTAAACAACCAAATATCCTTTTAAATTTTAAAATATATGAACTTTAAAT
97185590 A
131 A
*
97185591 AAAATAAAGGCAATATTTCACATTCAGAAAC-TCGAGAAGGTCGTGCCCTAACTTACGGGGTTTT
1 AAAATAAAGGCAATATTTCACATTCA-AAACTTCGAGAAGGTCGTACCCTAACTTACGGGGTTTT
* * * * * *
97185655 GATTTTTCTTGTTGAATCTAAACAATCGAATATCCTTTTAAA
65 CAATTTTCTCGTTGAACCTAAACAACCAAATATCCTTTTAAA
97185697 AATTAAAGTA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
129 29 0.32
130 23 0.26
131 38 0.42
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (131 bp):
AAAATAAAGGCAATATTTCACATTCAAAACTTCGAGAAGGTCGTACCCTAACTTACGGGGTTTTC
AATTTTCTCGTTGAACCTAAACAACCAAATATCCTTTTAAATTTTAAAATATATGAACTTTAAAT
A
Found at i:97190364 original size:17 final size:17
Alignment explanation
Indices: 97190316--97190365 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
97190306 TCACCTTAAA
97190316 AAAACAAAACAAAAAATG
1 AAAA-AAAACAAAAAATG
97190334 AAAAAAAAGC-AAAAATG
1 AAAAAAAA-CAAAAAATG
*
97190351 AAAAAAAATAAAAAA
1 AAAAAAAACAAAAAA
97190366 AAGAGAAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 24 0.83
18 5 0.17
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (17 bp):
AAAAAAAACAAAAAATG
Found at i:97190374 original size:26 final size:26
Alignment explanation
Indices: 97190326--97190433 Score: 85
Period size: 26 Copynumber: 3.8 Consensus size: 26
97190316 AAAACAAAAC
*
97190326 AAAAAATGAAAAAAAAGCA-AAAATGAA
1 AAAAAAT-AAAAAAAAG-AGAAAAAGAA
97190353 AAAAAATAAAAAAAAGAGAAAAGAGAAA
1 AAAAAATAAAAAAAAGAGAAAA-AG-AA
* *
97190381 AGAGAAAAGAAACAAGAAACAAGAAACAAGAA
1 A-A-AAAATAAA-AA-AAA-GAGAAA-AAGAA
97190413 AAAAAATAAAAAAAA-AGAAAA
1 AAAAAATAAAAAAAAGAGAAAA
97190434 GCAAAATAGA
Statistics
Matches: 68, Mismatches: 4, Indels: 20
0.74 0.04 0.22
Matches are distributed among these distances:
25 2 0.03
26 18 0.26
27 8 0.12
28 6 0.09
29 3 0.04
30 14 0.21
31 3 0.04
32 6 0.09
33 7 0.10
34 1 0.01
ACGTcount: A:0.80, C:0.04, G:0.13, T:0.04
Consensus pattern (26 bp):
AAAAAATAAAAAAAAGAGAAAAAGAA
Found at i:97190375 original size:33 final size:31
Alignment explanation
Indices: 97190338--97190458 Score: 101
Period size: 33 Copynumber: 3.8 Consensus size: 31
97190328 AAAATGAAAA
97190338 AAAAGCAAAAATGAAAAAAAATAAAAAAAAGAG
1 AAAAG-AAAAA-GAAAAAAAATAAAAAAAAGAG
* * *
97190371 AAAAGAGAAAAG---AGAAA-AGAAACAAGA-
1 AAAAGA-AAAAGAAAAAAAATAAAAAAAAGAG
97190398 AACAAGAAACAAGAAAAAAAATAAAAAAAA-AG
1 AA-AAGAAA-AAGAAAAAAAATAAAAAAAAGAG
97190430 AAAAGCAAAATAGAAAAGAAAATAAAAAA
1 AAAAG-AAAA-AGAAAA-AAAATAAAAAA
97190459 GAAAAAGAAG
Statistics
Matches: 71, Mismatches: 6, Indels: 22
0.72 0.06 0.22
Matches are distributed among these distances:
27 4 0.06
28 15 0.21
29 4 0.06
31 9 0.13
32 19 0.27
33 20 0.28
ACGTcount: A:0.79, C:0.04, G:0.13, T:0.04
Consensus pattern (31 bp):
AAAAGAAAAAGAAAAAAAATAAAAAAAAGAG
Found at i:97190397 original size:14 final size:13
Alignment explanation
Indices: 97190366--97190467 Score: 58
Period size: 14 Copynumber: 7.8 Consensus size: 13
97190356 AAATAAAAAA
97190366 AAGAGAAAAGAGAA-
1 AAGA-AAAAGA-AAC
97190380 AAGAGAAAAGAAAC
1 AAGA-AAAAGAAAC
97190394 AAGAAACAAGAAAC
1 AAGAAA-AAGAAAC
*
97190408 AAGAAAAA-AAAT
1 AAGAAAAAGAAAC
*
97190420 AA-AAAAA-AAGAA
1 AAGAAAAAGAA-AC
97190432 AAGCAAAATAG-AA-
1 AAG-AAAA-AGAAAC
97190445 AAGAAAATA-AAA-
1 AAGAAAA-AGAAAC
97190457 AAGAAAAAGAA
1 AAGAAAAAGAA
97190468 GAGGCCAATG
Statistics
Matches: 77, Mismatches: 2, Indels: 20
0.78 0.02 0.20
Matches are distributed among these distances:
11 8 0.10
12 25 0.32
13 9 0.12
14 33 0.43
15 2 0.03
ACGTcount: A:0.77, C:0.04, G:0.16, T:0.03
Consensus pattern (13 bp):
AAGAAAAAGAAAC
Found at i:97190397 original size:21 final size:19
Alignment explanation
Indices: 97190344--97190467 Score: 66
Period size: 20 Copynumber: 6.4 Consensus size: 19
97190334 AAAAAAAAGC
* *
97190344 AAAAATGAAAAA-AAATAAA
1 AAAAA-GAAAAAGAAACAAG
97190363 AAAAAGAGAAAAGAGAA-AAG
1 AAAAAGA-AAAAGA-AACAAG
97190383 AGAAAAGAAACAAGAAACAAG
1 A-AAAAGAAA-AAGAAACAAG
*
97190404 AAACAAGAAAAA-AAATAA-
1 AAA-AAGAAAAAGAAACAAG
*
97190422 AAAAAAAGAAAAGCAAA-ATAG
1 AAAAAGA-AAAAG-AAACA-AG
97190443 -AAAAGAAAATA-AAA-AAG
1 AAAAAGAAAA-AGAAACAAG
97190460 AAAAAGAA
1 AAAAAGAA
97190468 GAGGCCAATG
Statistics
Matches: 87, Mismatches: 4, Indels: 29
0.73 0.03 0.24
Matches are distributed among these distances:
17 5 0.06
18 20 0.23
19 18 0.21
20 22 0.25
21 22 0.25
ACGTcount: A:0.79, C:0.03, G:0.14, T:0.04
Consensus pattern (19 bp):
AAAAAGAAAAAGAAACAAG
Found at i:97190433 original size:7 final size:7
Alignment explanation
Indices: 97190336--97190433 Score: 71
Period size: 7 Copynumber: 14.6 Consensus size: 7
97190326 AAAAAATGAA
97190336 AAAAAAG
1 AAAAAAG
*
97190343 CAAAAATG
1 -AAAAAAG
97190351 -AAAAA-
1 AAAAAAG
*
97190356 AAATAA-
1 AAAAAAG
97190362 AAAAAAG
1 AAAAAAG
*
97190369 AGAAAAG
1 AAAAAAG
*
97190376 AGAAAAG
1 AAAAAAG
*
97190383 AGAAAAG
1 AAAAAAG
*
97190390 AAACAAG
1 AAAAAAG
*
97190397 AAACAAG
1 AAAAAAG
*
97190404 AAACAAG
1 AAAAAAG
97190411 AAAAAA-
1 AAAAAAG
*
97190417 AATAAA-
1 AAAAAAG
97190423 AAAAAAG
1 AAAAAAG
97190430 AAAA
1 AAAA
97190434 GCAAAATAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
6 23 0.30
7 48 0.62
8 6 0.08
ACGTcount: A:0.80, C:0.04, G:0.13, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:97190439 original size:13 final size:12
Alignment explanation
Indices: 97190334--97190464 Score: 79
Period size: 12 Copynumber: 10.2 Consensus size: 12
97190324 ACAAAAAATG
97190334 AAAA-AAAAGCAA
1 AAAAGAAAAG-AA
* *
97190346 AAATGAAAAAAA
1 AAAAGAAAAGAA
*
97190358 ATAAAAAAAAGAGA
1 A-AAAGAAAAGA-A
*
97190372 AAAGAGAAAAGAG
1 AAA-AGAAAAGAA
97190385 AAAAGAAACAAGAA
1 AAAAG-AA-AAGAA
*
97190399 ACAAGAAACAAGAA
1 AAAAG-AA-AAGAA
*
97190413 AAAA-AATAAAAA
1 AAAAGAA-AAGAA
97190425 AAAAGAAAAGCAA
1 AAAAGAAAAG-AA
*
97190438 AATAGAAAAGAA
1 AAAAGAAAAGAA
97190450 AATAA-AAAAGAA
1 AA-AAGAAAAGAA
97190462 AAA
1 AAA
97190465 GAAGAGGCCA
Statistics
Matches: 95, Mismatches: 15, Indels: 19
0.74 0.12 0.15
Matches are distributed among these distances:
11 1 0.01
12 33 0.35
13 32 0.34
14 29 0.31
ACGTcount: A:0.79, C:0.04, G:0.13, T:0.04
Consensus pattern (12 bp):
AAAAGAAAAGAA
Found at i:97191002 original size:65 final size:65
Alignment explanation
Indices: 97190895--97191018 Score: 185
Period size: 65 Copynumber: 1.9 Consensus size: 65
97190885 TTTAGCAAAG
* * * * * * *
97190895 TTTGCTATCTTTGATTAATTTGTTCGTTTCGAGCTATGCTCTCAATCAATTTCTTTCTTATTGTA
1 TTTGCCATCTTGGATTAACTTATTCGTCTCGAGCTATACTCTCAATCAATTTCCTTCTTATTGTA
97190960 TTTGCCATCTTGGATTAACTTATTCGTCTCGAGCTATACTCTCAATCAATTTCCTTCTT
1 TTTGCCATCTTGGATTAACTTATTCGTCTCGAGCTATACTCTCAATCAATTTCCTTCTT
97191019 GTCCATCATT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
65 52 1.00
ACGTcount: A:0.19, C:0.21, G:0.11, T:0.48
Consensus pattern (65 bp):
TTTGCCATCTTGGATTAACTTATTCGTCTCGAGCTATACTCTCAATCAATTTCCTTCTTATTGTA
Found at i:97191920 original size:143 final size:143
Alignment explanation
Indices: 97191588--97191977 Score: 412
Period size: 143 Copynumber: 2.7 Consensus size: 143
97191578 TAGATCGAAG
* * * * *
97191588 ATGGCGGATCTTACCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTGTCTCCCTG
1 ATGGCAGATCTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTATCTACCTA
* * * * * *
97191653 AAGTTGTAGCGGAGTAGACTGAAGACAGCGAATCTTATTTTCTGGACATTGCAGTGGAATAGGTT
66 AAGTTGTAACAGAGCAGACTGAAGACAGCGAATCTTATTTTCTGGACATTACAGTGGAACAGATT
* *
97191718 GAAGCTACAAGTT
131 AAAGCTACAAATT
* * * * ** * *
97191731 ATGGCAGATCTCATCTTCCTGAAGTTGCAGTGGAGCAAATCAAAGCCACTAGCCTTATCTATCTA
1 ATGGCAGATCTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTATCTACCTA
* * *
97191796 AAGTT-TCAATAGAGCATACTGAAGACAGCGAATCTTATTTTCCT-GACGTTACAGTGGAACAGA
66 AAGTTGT-AACAGAGCAGACTGAAGACAGCGAATCTTATTTT-CTGGACATTACAGTGGAACAGA
97191859 TTAAAGCTACAAATT
129 TTAAAGCTACAAATT
* * *
97191874 ATGG-AGAATCTTATCTTCTTAAAGTTGTAGTGGAACAGATTGAAGCCACCAGCTTTATCT-CCT
1 ATGGCAG-ATCTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTATCTACC-
* * * * * *
97191937 TAAAGTT-CAGCGGAGTAGACTGAAGATAGCAAATCTTATTT
64 TAAAGTTGTAACAGAGCAGACTGAAGACAGCGAATCTTATTT
97191978 CCTTTTCCTG
Statistics
Matches: 200, Mismatches: 43, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
142 30 0.15
143 168 0.84
144 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (143 bp):
ATGGCAGATCTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTATCTACCTA
AAGTTGTAACAGAGCAGACTGAAGACAGCGAATCTTATTTTCTGGACATTACAGTGGAACAGATT
AAAGCTACAAATT
Found at i:97192280 original size:128 final size:131
Alignment explanation
Indices: 97192117--97192350 Score: 316
Period size: 129 Copynumber: 1.8 Consensus size: 131
97192107 GAAAGTTTTC
* * *
97192117 AAAATAAAGGTAATATTTTGTATTTGGAACTTCGAGAA-GTCATACCCTAACTTACGGGGTTTC-
1 AAAATAAAGGCAATATTTTGTATTAGAAACTTCGAGAAGGTCATACCCTAACTTACGGGGTTTCG
* *
97192180 AATTTTCTCGTT-CACCTAAATAACCAAATATCCTTTTAAATTTTAAAATATATGAACTTTAAAT
66 AATTTTCTCGTTGAACCTAAACAACCAAATATCCTTTTAAATTTTAAAATATATGAACTTTAAAT
97192244 A
131 A
* *
97192245 AAAATAAAGGCAATATTTCTCGT-TTAGAAAC-TCGAGAAGGTCGTGCCCTAACTTACGGGGTTT
1 AAAATAAAGGCAATATTT-T-GTATTAGAAACTTCGAGAAGGTCATACCCTAACTTACGGGGTTT
* * * *
97192308 CGATTTTTCTCGTTGAATCTAAACAATCGAATATCCTTTTAAA
64 CGAATTTTCTCGTTGAACCTAAACAACCAAATATCCTTTTAAA
97192351 AATTAAAGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
128 24 0.27
129 30 0.33
130 13 0.14
131 23 0.26
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (131 bp):
AAAATAAAGGCAATATTTTGTATTAGAAACTTCGAGAAGGTCATACCCTAACTTACGGGGTTTCG
AATTTTCTCGTTGAACCTAAACAACCAAATATCCTTTTAAATTTTAAAATATATGAACTTTAAAT
A
Found at i:97194407 original size:24 final size:23
Alignment explanation
Indices: 97194380--97194442 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 23
97194370 TATCATTTCC
97194380 GCTCTTTCGAGCTATGATCAGTAA
1 GCTCTTTCGAGCTATGA-CAGTAA
* *
97194404 GCTCCTCCTGAGCTGATGACAGTAA
1 GCTCTTTC-GAGCT-ATGACAGTAA
97194429 GCTCTATT-GAGCTA
1 GCTCT-TTCGAGCTA
97194443 AAATGGTAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
23 1 0.03
24 11 0.34
25 15 0.47
26 5 0.16
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (23 bp):
GCTCTTTCGAGCTATGACAGTAA
Found at i:97197388 original size:54 final size:54
Alignment explanation
Indices: 97197306--97197449 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
97197296 TGGAGGAAGC
*
97197306 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
97197360 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
97197414 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
97197450 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:97197460 original size:27 final size:27
Alignment explanation
Indices: 97197309--97197467 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
97197299 AGGAAGCGTC
*
97197309 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
97197336 TTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
97197363 CTAGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
97197390 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
97197417 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
97197444 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
97197468 GCAGCCTCAC
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:97197461 original size:81 final size:80
Alignment explanation
Indices: 97197309--97197467 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 80
97197299 AGGAAGCGTC
*
97197309 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTAGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTAGTGACTAT
97197374 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
97197390 CTGGTGGCTCTGCCAC-ATATATCTG-TTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGATT-TGGTGGCTCTGCCACATATATCTGT-CCTAGTGAC
*
97197452 T-TCGTCACAATATCTG
63 TAT-GCCACAATATCTG
97197468 GCAGCCTCAC
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
80 19 0.28
81 50 0.72
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTAGTGACTAT
GCCACAATATCTGAT
Found at i:97204392 original size:27 final size:27
Alignment explanation
Indices: 97204354--97204491 Score: 167
Period size: 27 Copynumber: 5.1 Consensus size: 27
97204344 AAGCGTCCTA
* *
97204354 GTGGCTATGCCACAATTATCTGATTTG
1 GTGGCTCTGCCACAATTATCTGATCTG
97204381 GTGGCTCTGCCAC-ATATATCTG-TCCTG
1 GTGGCTCTGCCACAAT-TATCTGAT-CTG
*
97204408 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
* *
97204435 GTGACTCTGCCAC-ATATATCTGTTCTG
1 GTGGCTCTGCCACAAT-TATCTGATCTG
97204462 GTGGCTCTGCCACAA-TATCTGTATCTG
1 GTGGCTCTGCCACAATTATCTG-ATCTG
97204489 GTG
1 GTG
97204492 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 81 0.84
28 4 0.04
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Found at i:97204430 original size:54 final size:54
Alignment explanation
Indices: 97204348--97204494 Score: 233
Period size: 54 Copynumber: 2.7 Consensus size: 54
97204338 TGGAGAAAGC
* * *
97204348 GTCCTAGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
97204402 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
* *
97204456 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACT
97204495 TCGTCACAAT
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 81 0.93
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:97204502 original size:27 final size:27
Alignment explanation
Indices: 97204361--97204508 Score: 153
Period size: 27 Copynumber: 5.5 Consensus size: 27
97204351 CTAGTGGCTA
* *
97204361 TGCCACAATTATCTG-ATTTGGTGGCTC
1 TGCCACAA-TATCTGTATCTGGTGACTC
* * *
97204388 TGCCACATATATCTGT-CCTGGTGGCTA
1 TGCCACA-ATATCTGTATCTGGTGACTC
97204415 TGCCACAATTATCTG-ATCTGGTGACTC
1 TGCCACAA-TATCTGTATCTGGTGACTC
*
97204442 TGCCACATATATCTGT-TCTGGTGGCTC
1 TGCCACA-ATATCTGTATCTGGTGACTC
97204469 TGCCACAATATCTGTATCTGGTGACT-
1 TGCCACAATATCTGTATCTGGTGACTC
*
97204495 TCGTCACAATATCT
1 T-GCCACAATATCT
97204509 AGCAGCCTCG
Statistics
Matches: 104, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
26 10 0.10
27 92 0.88
28 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Done.