Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 289 of 362
Found at i:97214891 original size:8 final size:8
Alignment explanation
Indices: 97214845--97214907 Score: 50
Period size: 7 Copynumber: 8.8 Consensus size: 8
97214835 TTAATTTTAT
97214845 TTAAAATA
1 TTAAAATA
*
97214853 --AAAACA
1 TTAAAATA
97214859 TT-AAAT-
1 TTAAAATA
97214865 TTAAAAT-
1 TTAAAATA
97214872 TTAAAA-A
1 TTAAAATA
*
97214879 ATAAAATA
1 TTAAAATA
97214887 TT-AAATA
1 TTAAAATA
*
97214894 TTTAAATA
1 TTAAAATA
97214902 TTAAAA
1 TTAAAA
97214908 AACACTTTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
6 7 0.16
7 25 0.57
8 12 0.27
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (8 bp):
TTAAAATA
Found at i:97214896 original size:23 final size:22
Alignment explanation
Indices: 97214843--97214899 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
97214833 AATTAATTTT
*
97214843 ATTTAAAA--TAAAAACATTAA
1 ATTTAAAATTTAAAAACATAAA
97214863 ATTTAAAATTTAAAAA-ATAAA
1 ATTTAAAATTTAAAAACATAAA
97214884 ATATTAAATATTTAAA
1 AT-TTAAA-ATTTAAA
97214900 TATTAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 8 0.25
21 6 0.19
22 11 0.34
23 7 0.22
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
ATTTAAAATTTAAAAACATAAA
Found at i:97215086 original size:24 final size:24
Alignment explanation
Indices: 97215052--97215115 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
97215042 TATAATACAT
97215052 AAAAATA-TTTTTAAAAAAGTT-TA
1 AAAAATATTTTTTAAAAAA-TTATA
*
97215075 AAAAATATTTTTTATAAAATTATA
1 AAAAATATTTTTTAAAAAATTATA
* *
97215099 AAATATATATTTATAAA
1 AAAAATAT-TTTTTAAA
97215116 TTTTAAGAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 9 0.26
24 19 0.56
25 6 0.18
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
AAAAATATTTTTTAAAAAATTATA
Found at i:97215101 original size:23 final size:24
Alignment explanation
Indices: 97215050--97215115 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 24
97215040 TATATAATAC
*
97215050 ATAAAAATA-TTTTTAAAAAAGTT
1 ATAAAAATATTTTTTATAAAAGTT
97215073 -TAAAAAATATTTTTTATAAAA-TT
1 AT-AAAAATATTTTTTATAAAAGTT
*
97215096 AT-AAAATATATATTTATAAA
1 ATAAAAATAT-TTTTTATAAA
97215116 TTTTAAGAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
22 8 0.22
23 18 0.49
24 11 0.30
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
ATAAAAATATTTTTTATAAAAGTT
Found at i:97215312 original size:22 final size:21
Alignment explanation
Indices: 97215265--97215312 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
97215255 TTATAAAAAA
* *
97215265 TATTTTAAAAATTATTTATAG
1 TATTTTAAAAATAATTTATAC
*
97215286 T-TTTTCAAAAATAATTTTTAC
1 TATTTT-AAAAATAATTTATAC
97215307 TATTTT
1 TATTTT
97215313 TTACATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 4 0.18
21 14 0.64
22 4 0.18
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (21 bp):
TATTTTAAAAATAATTTATAC
Found at i:97215445 original size:18 final size:20
Alignment explanation
Indices: 97215422--97215470 Score: 66
Period size: 18 Copynumber: 2.5 Consensus size: 20
97215412 TTTCTAGATG
* *
97215422 ATATATATTTATGAATTTAT
1 ATATATATTTATGAATGTGT
97215442 ATATATATTT-T-AATGTGT
1 ATATATATTTATGAATGTGT
97215460 ATATATATTTA
1 ATATATATTTA
97215471 GTAAAAGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 15 0.58
19 1 0.04
20 10 0.38
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (20 bp):
ATATATATTTATGAATGTGT
Found at i:97216772 original size:20 final size:21
Alignment explanation
Indices: 97216742--97216780 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
97216732 CATTTTTATT
97216742 ATTTATAAAAAACATAAAAAA
1 ATTTATAAAAAACATAAAAAA
97216763 ATTT-TAAAAAACATAAAA
1 ATTTATAAAAAACATAAAA
97216781 TCTTAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (21 bp):
ATTTATAAAAAACATAAAAAA
Found at i:97216897 original size:17 final size:16
Alignment explanation
Indices: 97216873--97216904 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
97216863 CTACATAAAA
97216873 AATAAAAAAAAATAAT
1 AATAAAAAAAAATAAT
97216889 AATATAAAAAAAATAA
1 AATA-AAAAAAAATAA
97216905 CATGCCTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AATAAAAAAAAATAAT
Found at i:97217350 original size:22 final size:21
Alignment explanation
Indices: 97217321--97217364 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
97217311 AAATTAAAAA
*
97217321 TTTAACTT-TCTTTATAATTTT
1 TTTAACTTAT-TTTAAAATTTT
97217342 TTTAGACTTATTTTAAAATTTT
1 TTTA-ACTTATTTTAAAATTTT
97217364 T
1 T
97217365 ATAATTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 4 0.20
22 15 0.75
23 1 0.05
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTAACTTATTTTAAAATTTT
Found at i:97217855 original size:19 final size:18
Alignment explanation
Indices: 97217827--97217874 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
97217817 CTTTATATAT
*
97217827 TTTTAGAATTTTTTAAAAA
1 TTTTA-AATTTTCTAAAAA
97217846 TTTTATAATTTTCTAAAAA
1 TTTTA-AATTTTCTAAAAA
*
97217865 TATTAAATTT
1 TTTTAAATTT
97217875 GAAATTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (18 bp):
TTTTAAATTTTCTAAAAA
Found at i:97218078 original size:6 final size:6
Alignment explanation
Indices: 97218067--97218094 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
97218057 TAACTCAAAA
97218067 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
97218095 CAGAATAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:97218246 original size:2 final size:2
Alignment explanation
Indices: 97218239--97218284 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
97218229 ATCCAGCGTT
97218239 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
97218281 TC TC
1 TC TC
97218285 ATTAAATTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:97218393 original size:21 final size:21
Alignment explanation
Indices: 97218354--97218407 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
97218344 TAACTAAATA
*
97218354 ATAAAATTATTTGATGTATA-
1 ATAATATTATTTGATGTATAG
97218374 ATAATTATTTATTT-ATGTATAG
1 ATAA-TA-TTATTTGATGTATAG
97218396 ATAATATTATTT
1 ATAATATTATTT
97218408 CAAGTAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 10 0.33
21 10 0.33
22 10 0.33
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (21 bp):
ATAATATTATTTGATGTATAG
Found at i:97221282 original size:20 final size:19
Alignment explanation
Indices: 97221260--97221317 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 19
97221250 ACTTGTTTTA
97221260 AAACAATTTTAACTTGATT
1 AAACAATTTTAACTTGATT
97221279 AAA-AATGTTTAACTAT-ATT
1 AAACAAT-TTTAACT-TGATT
*
97221298 GAAACCATTTTAACTTGATT
1 -AAACAATTTTAACTTGATT
97221318 TTGTCATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
18 3 0.09
19 14 0.42
20 14 0.42
21 2 0.06
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (19 bp):
AAACAATTTTAACTTGATT
Found at i:97221379 original size:23 final size:24
Alignment explanation
Indices: 97221344--97221391 Score: 64
Period size: 22 Copynumber: 2.0 Consensus size: 24
97221334 TTTGTTCAAC
97221344 TTTAACTTTTATA-CAAAA-ATAT
1 TTTAACTTTTATATCAAAACATAT
*
97221366 TTTAATTTGTTATATCAAAACATAT
1 TTTAACTT-TTATATCAAAACATAT
97221391 T
1 T
97221392 ATCAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 5 0.23
24 5 0.23
25 5 0.23
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (24 bp):
TTTAACTTTTATATCAAAACATAT
Found at i:97223669 original size:38 final size:37
Alignment explanation
Indices: 97223617--97223698 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 37
97223607 ATGTTTAACC
*
97223617 TTACAATCTCCCTTAAGAG-TTCTACCCAAAATCTTAAGA
1 TTACAA-CTCCCTTAA-AGTTTCTACCC-AAACCTTAAGA
97223656 TTACAACTCCCTTAAAGTTTCTACCCAAACCTTAAGA
1 TTACAACTCCCTTAAAGTTTCTACCCAAACCTTAAGA
97223693 TT-CAAC
1 TTACAAC
97223699 ACTCAAAGAG
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
36 4 0.10
37 14 0.34
38 17 0.41
39 6 0.15
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.30
Consensus pattern (37 bp):
TTACAACTCCCTTAAAGTTTCTACCCAAACCTTAAGA
Found at i:97224189 original size:18 final size:18
Alignment explanation
Indices: 97224166--97224200 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
97224156 TTAAAACAGC
97224166 TTTAACTTC-ATTGAAATG
1 TTTAAC-TCAATTGAAATG
97224184 TTTAACTCAATTGAAAT
1 TTTAACTCAATTGAAAT
97224201 CATTTTAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (18 bp):
TTTAACTCAATTGAAATG
Found at i:97224268 original size:22 final size:24
Alignment explanation
Indices: 97224240--97224283 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
97224230 GTTTTGTTCA
97224240 ATTTTAACTT-TTAT-TCAAAAAC
1 ATTTTAACTTGTTATATCAAAAAC
*
97224262 ATTTTAATTTGTTATATCAAAA
1 ATTTTAACTTGTTATATCAAAA
97224284 GATATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (24 bp):
ATTTTAACTTGTTATATCAAAAAC
Found at i:97227162 original size:40 final size:40
Alignment explanation
Indices: 97227107--97227188 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
97227097 ATGTGAAAAA
*
97227107 ATTGATATGCGTCTAGTGGATGTTATTACAACCTATTTGT
1 ATTGATATGCGTCTAGTGGATGTTATTACAACCTACTTGT
97227147 ATTGATATGCGTCTAGTGGATGTTATTACAACCTACTTGT
1 ATTGATATGCGTCTAGTGGATGTTATTACAACCTACTTGT
97227187 AT
1 AT
97227189 GGTACACTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (40 bp):
ATTGATATGCGTCTAGTGGATGTTATTACAACCTACTTGT
Found at i:97228995 original size:29 final size:25
Alignment explanation
Indices: 97228932--97228995 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 25
97228922 TATTTAAACC
*
97228932 ATATTA-ATAAAATAAAATAAAATT
1 ATATTATATAAAATAAAATAAAAAT
97228956 ATATT-TA-AAAATAAAAATAAAACAAT
1 ATATTATATAAAAT-AAAAT-AAA-AAT
97228982 ACTATTATATAAAA
1 A-TATTATATAAAA
97228996 ATAATGTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
23 5 0.16
24 11 0.34
25 3 0.09
26 3 0.09
27 4 0.12
28 2 0.06
29 4 0.12
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (25 bp):
ATATTATATAAAATAAAATAAAAAT
Found at i:97230280 original size:55 final size:55
Alignment explanation
Indices: 97230117--97230284 Score: 183
Period size: 58 Copynumber: 3.0 Consensus size: 55
97230107 AAAAAAGCAA
** * *
97230117 AAAAAAATTGAATCCCTAATTTTACTCTGTAATCTCATTCGACCTAGAATTCTAAAAG
1 AAAAAAA-TGAATCCCTAATTTTACTCTCCAATCTCATTCGATCTAGAATTC--AAGG
** * * * *
97230175 AAAAAGTTTGATTCCCTAATTTTACTCTTCAATCTCATTGGATCAAGAATTCAAGG
1 AAAAA-AATGAATCCCTAATTTTACTCTCCAATCTCATTCGATCTAGAATTCAAGG
* * *
97230231 AAAAAAATGAATCCCTAATTTTACTCTCCAATCTCATCCGATTTGGAATTCAAG
1 AAAAAAATGAATCCCTAATTTTACTCTCCAATCTCATTCGATCTAGAATTCAAG
97230285 TTCATGGCTT
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
55 40 0.44
56 8 0.09
58 43 0.47
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (55 bp):
AAAAAAATGAATCCCTAATTTTACTCTCCAATCTCATTCGATCTAGAATTCAAGG
Found at i:97232148 original size:21 final size:21
Alignment explanation
Indices: 97232108--97232148 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97232098 TAGCAAAAAA
*
97232108 CTCTCAAATTTCTCCCTAAAG
1 CTCTCAAATTTCTCACTAAAG
*
97232129 CTCTCAAATTTCTCATTAAA
1 CTCTCAAATTTCTCACTAAA
97232149 TTTCCCAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.02, T:0.37
Consensus pattern (21 bp):
CTCTCAAATTTCTCACTAAAG
Found at i:97233323 original size:7 final size:7
Alignment explanation
Indices: 97233311--97233342 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
97233301 AGTCGTTTCA
97233311 TATTTAG
1 TATTTAG
97233318 TATTTAG
1 TATTTAG
97233325 TATTTAG
1 TATTTAG
97233332 TATTTAG
1 TATTTAG
97233339 TATT
1 TATT
97233343 ATGTATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:97233951 original size:18 final size:18
Alignment explanation
Indices: 97233928--97233965 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
97233918 TGTCAGGTGC
97233928 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
97233946 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
97233964 GT
1 GT
97233966 TTCATTTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.08, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:97234383 original size:24 final size:23
Alignment explanation
Indices: 97234356--97234412 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
97234346 AATTTAATAA
*
97234356 AATAAAAGTTGTTTTTA-ATATTTT
1 AATAAAA-TTATTTTTATAT-TTTT
97234380 AATATTAAATTATTTTTATATTTTT
1 AATA--AAATTATTTTTATATTTTT
97234405 AATAAAAT
1 AATAAAAT
97234413 AGAAGTTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 4 0.14
24 4 0.14
25 16 0.55
26 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (23 bp):
AATAAAATTATTTTTATATTTTT
Found at i:97237723 original size:125 final size:125
Alignment explanation
Indices: 97237434--97237805 Score: 534
Period size: 125 Copynumber: 3.0 Consensus size: 125
97237424 GGCCAAACAT
*
97237434 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGTTGACA-TGTATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAG-CTTTTTCAGTAATTTTGTTGACAGTGTATC
* * *
97237498 TTGCTTGAAGCATTTTTTACACTATTTATTCAGAAACGTCTTCTCAAAATT-TTTTTTCAA
65 TTGCTTGAAGCATTTTTAACACTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTTTCAA
* * * * *
97237558 GAACTACTGTAGAAAAATAGCATCCACATGGGAGCATTTTTCAGTACTTTTGTTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAGTAATTTTGTTGACAGTGTATC
* * * *
97237623 TTGCTTAAAACATTTTTAACACTATTTGTTCAGAAATGTCTTCTC-AAATTAATTTTTTTAG
65 TTGCTTGAAGCATTTTTAACACTATTTGTTCAGAAATGTCTTCTCAAAATT-ATTTTTTCAA
* * *
97237684 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTCAGTAATTTTGCTGATAGTGTATCC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTCAGTAATTTTGTTGACAGTGTATCT
* *
97237749 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTTT
66 TGCTTGAAGCATTTTTAACACTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTTT
97237806 AAGGTAAAAA
Statistics
Matches: 218, Mismatches: 25, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
124 57 0.26
125 117 0.54
126 44 0.20
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (125 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTCAGTAATTTTGTTGACAGTGTATCT
TGCTTGAAGCATTTTTAACACTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTTTCAA
Found at i:97237919 original size:34 final size:34
Alignment explanation
Indices: 97237866--97237963 Score: 135
Period size: 34 Copynumber: 2.9 Consensus size: 34
97237856 ATTTAAACCC
*
97237866 TAAACCCTAATTTAATTAATTTATTTAAAACTCA
1 TAAACCCTAATTTAATTAATTTATTTAAAAATCA
* * * *
97237900 TAAAACCTAATGTACTTAATTTATTTAAAAATTA
1 TAAACCCTAATTTAATTAATTTATTTAAAAATCA
*
97237934 TAAACCCTAATTTAATTAATTT-TTAAAAAA
1 TAAACCCTAATTTAATTAATTTATTTAAAAA
97237964 GAACATTAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
33 7 0.13
34 48 0.87
ACGTcount: A:0.47, C:0.11, G:0.01, T:0.41
Consensus pattern (34 bp):
TAAACCCTAATTTAATTAATTTATTTAAAAATCA
Found at i:97241996 original size:29 final size:29
Alignment explanation
Indices: 97241948--97242004 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
97241938 AGACGCATTT
97241948 TGCTAAAATCAGCCATTTTCGGTAAATAA
1 TGCTAAAATCAGCCATTTTCGGTAAATAA
* *
97241977 TGCTAAAATCGGCTCA-TTTCTGTAAATA
1 TGCTAAAATCAGC-CATTTTCGGTAAATA
97242005 TACTTGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 23 0.92
30 2 0.08
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (29 bp):
TGCTAAAATCAGCCATTTTCGGTAAATAA
Found at i:97250387 original size:26 final size:25
Alignment explanation
Indices: 97250358--97250429 Score: 67
Period size: 26 Copynumber: 2.9 Consensus size: 25
97250348 CCTGTTATAT
97250358 GGCTCTTCATGAGCTTCTCGATTAAA
1 GGCTCTTCATGAGCTTCTCGATT-AA
** * *
97250384 GGCTCTTTGTGAGCTTCCCGA-TAT
1 GGCTCTTCATGAGCTTCTCGATTAA
* *
97250408 GGCTC-ACTTGAGCTTCTCGATT
1 GGCTCTTCATGAGCTTCTCGATT
97250430 TATGGCTATC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
23 11 0.30
24 7 0.19
25 1 0.03
26 18 0.49
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (25 bp):
GGCTCTTCATGAGCTTCTCGATTAA
Found at i:97250423 original size:23 final size:24
Alignment explanation
Indices: 97250393--97250509 Score: 68
Period size: 25 Copynumber: 4.8 Consensus size: 24
97250383 AGGCTCTTTG
97250393 TGAGCTTCCCGA-TATGGCTCA-CT
1 TGAGCTTCCCGATTATGGCT-ATCT
*
97250416 TGAGCTTCTCGATTTATGGCTATCT
1 TGAGCTTCCCGA-TTATGGCTATCT
* *
97250441 GGAGCTTCCCAATTAATGG-T-TCTT
1 TGAGCTTCCCGATT-ATGGCTATC-T
*
97250465 TGGAGCTACCCG-TTATTGGC--TCGT
1 T-GAGCTTCCCGATTA-TGGCTATC-T
*
97250489 ATGAGCTTCTCGATTATGGCT
1 -TGAGCTTCCCGATTATGGCT
97250510 CTTATAAGCT
Statistics
Matches: 73, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
23 14 0.19
24 25 0.34
25 34 0.47
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (24 bp):
TGAGCTTCCCGATTATGGCTATCT
Found at i:97250445 original size:25 final size:25
Alignment explanation
Indices: 97250368--97250448 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
97250358 GGCTCTTCAT
* * * *
97250368 GAGCTTCTCGATTAAAGGCTCTTTG
1 GAGCTTCTCGATTTATGGCTATCTG
* *
97250393 TGAGCTTCCCGA--TATGGCTCA-CTT
1 -GAGCTTCTCGATTTATGGCT-ATCTG
97250417 GAGCTTCTCGATTTATGGCTATCTG
1 GAGCTTCTCGATTTATGGCTATCTG
97250442 GAGCTTC
1 GAGCTTC
97250449 CCAATTAATG
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
23 10 0.23
24 7 0.16
25 16 0.37
26 10 0.23
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (25 bp):
GAGCTTCTCGATTTATGGCTATCTG
Found at i:97250456 original size:74 final size:73
Alignment explanation
Indices: 97250368--97250509 Score: 180
Period size: 74 Copynumber: 1.9 Consensus size: 73
97250358 GGCTCTTCAT
* * *
97250368 GAGCTTCTCGATTAAAGGCTCTTTGTGAGCTTCCCGATA-TGGCTCACT-TGAGCTTCTCGATTT
1 GAGCTTCCCAATTAAAGGCTCTTTG-GAGCTACCCGATATTGGCTC-CTATGAGCTTCTCGA-TT
97250431 ATGGCTATCTG
63 ATGGCTATCTG
* * * *
97250442 GAGCTTCCCAATTAATGGTTCTTTGGAGCTACCCGTTATTGGCTCGTATGAGCTTCTCGATTATG
1 GAGCTTCCCAATTAAAGGCTCTTTGGAGCTACCCGATATTGGCTCCTATGAGCTTCTCGATTATG
97250507 GCT
66 GCT
97250510 CTTATAAGCT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
73 20 0.34
74 39 0.66
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (73 bp):
GAGCTTCCCAATTAAAGGCTCTTTGGAGCTACCCGATATTGGCTCCTATGAGCTTCTCGATTATG
GCTATCTG
Found at i:97250859 original size:16 final size:16
Alignment explanation
Indices: 97250840--97250871 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
97250830 AAATGACTAA
97250840 CATGTTTAATGAAATT
1 CATGTTTAATGAAATT
*
97250856 CATGTTTGATGAAATT
1 CATGTTTAATGAAATT
97250872 GTGTGTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.44
Consensus pattern (16 bp):
CATGTTTAATGAAATT
Found at i:97258073 original size:39 final size:39
Alignment explanation
Indices: 97258028--97258105 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
97258018 AATGGGTAAA
97258028 ACCCTGATACGAGAAAATAAATGAATTCAAAGTGAATTG
1 ACCCTGATACGAGAAAATAAATGAATTCAAAGTGAATTG
97258067 ACCCTGATACGAGAAAATAAATGAATTCAAAGTGAATTG
1 ACCCTGATACGAGAAAATAAATGAATTCAAAGTGAATTG
97258106 TTACTTGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (39 bp):
ACCCTGATACGAGAAAATAAATGAATTCAAAGTGAATTG
Found at i:97261519 original size:20 final size:21
Alignment explanation
Indices: 97261487--97261530 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
97261477 TTGATAGTTT
*
97261487 AAATATCACTTT-AATGTAAA
1 AAATATCACTTTAAATGGAAA
97261507 AAATATCTA-TTTAAATGGAAA
1 AAATATC-ACTTTAAATGGAAA
97261528 AAA
1 AAA
97261531 GTATAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.32
Consensus pattern (21 bp):
AAATATCACTTTAAATGGAAA
Found at i:97262062 original size:13 final size:13
Alignment explanation
Indices: 97262030--97262076 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
97262020 AAAATATCAT
*
97262030 ATATTGTATGTTAA
1 ATATTTTAT-TTAA
97262044 ATATTTTATTTAA
1 ATATTTTATTTAA
*
97262057 AAATTTTTATTTAA
1 ATA-TTTTATTTAA
97262071 ATATTT
1 ATATTT
97262077 AGTTAAGATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 9 0.31
14 20 0.69
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (13 bp):
ATATTTTATTTAA
Found at i:97271561 original size:14 final size:14
Alignment explanation
Indices: 97271542--97271570 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
97271532 TTTGACTTGA
97271542 TAAATTTCAGTCCT
1 TAAATTTCAGTCCT
97271556 TAAATTTCAGTCCT
1 TAAATTTCAGTCCT
97271570 T
1 T
97271571 GTACTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.45
Consensus pattern (14 bp):
TAAATTTCAGTCCT
Found at i:97278073 original size:89 final size:89
Alignment explanation
Indices: 97277912--97278077 Score: 298
Period size: 88 Copynumber: 1.9 Consensus size: 89
97277902 CAGTACACTG
* *
97277912 GAGGTGATCAAATTCAGTTAAAAACTGGCAAATTTGCACTAATGACATTCCTCTGGAGTGAGGTT
1 GAGGTGATCAAATTCAGTTAAAAAATAGCAAATTTGCACTAATGACATTCCTCTGGAGTGAGGTT
97277977 GAGCAAGTCAACTTCAAAGACTCA
66 GAGCAAGTCAACTTCAAAGACTCA
97278001 GAGGTGAT-AAATTCAGTTAAAAAATAGCAAATTTGCACTAATGACATTCCTCTTGGAGTGAGGT
1 GAGGTGATCAAATTCAGTTAAAAAATAGCAAATTTGCACTAATGACATTCCTC-TGGAGTGAGGT
97278065 TGAGCAAGTCAAC
65 TGAGCAAGTCAAC
97278078 CATTCATTAC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
88 42 0.57
89 32 0.43
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (89 bp):
GAGGTGATCAAATTCAGTTAAAAAATAGCAAATTTGCACTAATGACATTCCTCTGGAGTGAGGTT
GAGCAAGTCAACTTCAAAGACTCA
Found at i:97287523 original size:21 final size:21
Alignment explanation
Indices: 97287497--97287537 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97287487 AGACGAGCAA
* *
97287497 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
97287518 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
97287538 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:97292445 original size:22 final size:21
Alignment explanation
Indices: 97292415--97292455 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
97292405 GGGATAAAGG
*
97292415 AAAAATTAAGTATCAAACTGA
1 AAAAATTAAGTACCAAACTGA
97292436 AAAAACTTAAGTACCAAACT
1 AAAAA-TTAAGTACCAAACT
97292456 AAACATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (21 bp):
AAAAATTAAGTACCAAACTGA
Found at i:97292527 original size:30 final size:28
Alignment explanation
Indices: 97292435--97292527 Score: 71
Period size: 31 Copynumber: 3.1 Consensus size: 28
97292425 TATCAAACTG
* *
97292435 AAAAAACTTAAGTACCAAACTAAACATTA
1 AAAAAATTTAAGTACCAAATTAAAC-TTA
* * *
97292464 AAGTCAAATTT-AGATACCAAACTAAAACGTA
1 AA--AAAATTTAAG-TACCAAA-TTAAACTTA
*
97292495 AAAAGAATTTAAGTACCAAATTAAACTTT
1 AAAA-AATTTAAGTACCAAATTAAACTTA
97292524 AAAA
1 AAAA
97292528 CCCAACACAA
Statistics
Matches: 49, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
29 13 0.27
30 14 0.29
31 18 0.37
32 4 0.08
ACGTcount: A:0.56, C:0.14, G:0.06, T:0.24
Consensus pattern (28 bp):
AAAAAATTTAAGTACCAAATTAAACTTA
Found at i:97302737 original size:42 final size:43
Alignment explanation
Indices: 97302658--97302738 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 43
97302648 AAATTGGGGC
* * * *
97302658 TAAATTTTAAAATAATTTGAAACCTCATTAAAATCTAGAAAAA
1 TAAATTTAAAAAAAATTTAAAACCTCAATAAAATCTAGAAAAA
* *
97302701 TAAATTTAAAAAAAATTTAAAATC-CAATAAATTCTAGA
1 TAAATTTAAAAAAAATTTAAAACCTCAATAAAATCTAGA
97302739 TTTGGAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 12 0.38
43 20 0.62
ACGTcount: A:0.56, C:0.09, G:0.04, T:0.32
Consensus pattern (43 bp):
TAAATTTAAAAAAAATTTAAAACCTCAATAAAATCTAGAAAAA
Found at i:97305768 original size:39 final size:39
Alignment explanation
Indices: 97305714--97305837 Score: 178
Period size: 39 Copynumber: 3.2 Consensus size: 39
97305704 CAGTGATGTT
*
97305714 TATCCGGACTTAGGGTCTGCAGGCTATGTGCTGAAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGAAATTA
*
97305753 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGAAATTA
* * *
97305792 TATCCGAACTTAAGGTCCGCAGGCTACGTGCTGGAAA-TA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCT-GAAATTA
*
97305831 TGTCCGG
1 TATCCGG
97305838 GCTAAAGTCC
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
39 73 0.96
40 3 0.04
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGAAATTA
Found at i:97305851 original size:39 final size:39
Alignment explanation
Indices: 97305714--97305864 Score: 126
Period size: 39 Copynumber: 3.9 Consensus size: 39
97305704 CAGTGATGTT
* ** * *
97305714 TATCCGGACTTAGGGTCTGCAGGCTATGTGCT-GAAATTA
1 TATCCGAACTTAAAGTCCGCAGGCTACGTGCTGGAAA-TA
* ** * *
97305753 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGAACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
*
97305792 TATCCGAACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGAACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
* ** * *
97305831 TGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGG
1 TATCCGAACTTAAAGT-CCGCAGGCTACGTGCTGG
97305865 TATTATACTG
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
38 5 0.05
39 90 0.92
40 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.26
Consensus pattern (39 bp):
TATCCGAACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
Found at i:97305864 original size:78 final size:78
Alignment explanation
Indices: 97305714--97305871 Score: 178
Period size: 78 Copynumber: 2.0 Consensus size: 78
97305704 CAGTGATGTT
* * * * **
97305714 TATCCGGACTTAGGGTCTGCAGGCTATGTGCTGAAATTATATCCGGACTTAGGGTCCGCAGGCTA
1 TATCCGAACTTAAGGTCCGCAGGCTACGTGCTGAAATTATATCCGGACTTAAAGTCCGCAGGCTA
*
97305779 TGTGCTGGAATTA
66 TGAGCTGGAATTA
* *
97305792 TATCCGAACTTAAGGTCCGCAGGCTACGTGCTGGAAA-TATGTCCGGGC-TAAAGTCCCGCAGGC
1 TATCCGAACTTAAGGTCCGCAGGCTACGTGCT-GAAATTATATCCGGACTTAAAGT-CCGCAGGC
*
97305855 T-TCGAGCTGGTATTA
64 TAT-GAGCTGGAATTA
97305870 TA
1 TA
97305872 CTGGGTTTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
77 5 0.07
78 58 0.87
79 4 0.06
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (78 bp):
TATCCGAACTTAAGGTCCGCAGGCTACGTGCTGAAATTATATCCGGACTTAAAGTCCGCAGGCTA
TGAGCTGGAATTA
Found at i:97307342 original size:21 final size:21
Alignment explanation
Indices: 97307318--97307388 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 21
97307308 AATCATGAAC
97307318 TCAGACCATAACTCAATGAGT
1 TCAGACCATAACTCAATGAGT
**
97307339 TCAGATGCCACATATA-TC-ATGAAC
1 TCAGA---C-CATA-ACTCAATGAGT
97307363 TCAGACCATAACTCAATGAGT
1 TCAGACCATAACTCAATGAGT
97307384 TCAGA
1 TCAGA
97307389 TCACACAGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
19 1 0.03
20 6 0.15
21 15 0.38
24 10 0.26
25 6 0.15
26 1 0.03
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (21 bp):
TCAGACCATAACTCAATGAGT
Found at i:97307352 original size:45 final size:45
Alignment explanation
Indices: 97307302--97307389 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
97307292 AAACATGTGT
97307302 CACATAAATCATGAACTCAGACCATAACTCAATGAGTTCAGATGC
1 CACATAAATCATGAACTCAGACCATAACTCAATGAGTTCAGATGC
*
97307347 CACATATATCATGAACTCAGACCATAACTCAATGAGTTCAGAT
1 CACATAAATCATGAACTCAGACCATAACTCAATGAGTTCAGAT
97307390 CACACAGTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (45 bp):
CACATAAATCATGAACTCAGACCATAACTCAATGAGTTCAGATGC
Found at i:97315193 original size:24 final size:24
Alignment explanation
Indices: 97315142--97315221 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
97315132 AGCGCTGAAT
* *
97315142 AGCCATATATCGGGAAGTTCAAGTG
1 AGCCA-ATATCGGGAAGCTCAAGAG
*
97315167 AGCCAATATCGGGAAGCTCAGGAG
1 AGCCAATATCGGGAAGCTCAAGAG
* * *
97315191 AGCCATTAATCAGGAAGCTCACAAAG
1 AGCCAAT-ATCGGGAAGCTCA-AGAG
97315217 AGCCA
1 AGCCA
97315222 TATAACGAGA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
24 22 0.48
25 17 0.37
26 7 0.15
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.16
Consensus pattern (24 bp):
AGCCAATATCGGGAAGCTCAAGAG
Found at i:97317393 original size:28 final size:28
Alignment explanation
Indices: 97317362--97317417 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
97317352 AAAATAGGAA
*
97317362 TCATTGAAATAAATGTTGAAATTCTAAC
1 TCATTGAAATAAATGCTGAAATTCTAAC
97317390 TCATTGAAATAAATGCTGAAATTCTAAC
1 TCATTGAAATAAATGCTGAAATTCTAAC
97317418 ATGTTGGGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (28 bp):
TCATTGAAATAAATGCTGAAATTCTAAC
Found at i:97321155 original size:24 final size:24
Alignment explanation
Indices: 97321117--97321231 Score: 89
Period size: 23 Copynumber: 5.0 Consensus size: 24
97321107 TAACGATATA
**
97321117 TCAGCTCGTTAGAGCTTACTGTTT
1 TCAGCTCGAAAGAGCTTACTGTTT
* *
97321141 TTAGCTC-AAAGGAGCTTACCG-TT
1 TCAGCTCGAAA-GAGCTTACTGTTT
*
97321164 TCAGCTCGTAAGAGCTTACTG--T
1 TCAGCTCGAAAGAGCTTACTGTTT
* **
97321186 TCAGCTCGATAGAGCTTACCATTT
1 TCAGCTCGAAAGAGCTTACTGTTT
*
97321210 T-AGCTC-AATAGAGCTCACTGTT
1 TCAGCTCGAA-AGAGCTTACTGTT
97321232 CATATGCTCA
Statistics
Matches: 71, Mismatches: 15, Indels: 11
0.73 0.15 0.11
Matches are distributed among these distances:
22 19 0.27
23 33 0.46
24 19 0.27
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (24 bp):
TCAGCTCGAAAGAGCTTACTGTTT
Found at i:97321191 original size:22 final size:23
Alignment explanation
Indices: 97321117--97321204 Score: 92
Period size: 22 Copynumber: 3.8 Consensus size: 23
97321107 TAACGATATA
*
97321117 TCAGCTCGTTAGAGCTTACTGTTT
1 TCAGCTCGTAAGAGCTTACTG-TT
* * *
97321141 TTAGCTC-AAAGGAGCTTACCGTT
1 TCAGCTCGTAA-GAGCTTACTGTT
97321164 TCAGCTCGTAAGAGCTTACTG-T
1 TCAGCTCGTAAGAGCTTACTGTT
97321186 TCAGCTCG-ATAGAGCTTAC
1 TCAGCTCGTA-AGAGCTTAC
97321205 CATTTTAGCT
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
21 1 0.02
22 18 0.33
23 18 0.33
24 17 0.31
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (23 bp):
TCAGCTCGTAAGAGCTTACTGTT
Found at i:97321215 original size:45 final size:45
Alignment explanation
Indices: 97321117--97321233 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 45
97321107 TAACGATATA
* * *
97321117 TCAGCTCGTTAGAGCTTACTGTTTTTAGCTCAAAGGAGCTTACCGTT
1 TCAGCTCGTAAGAGCTTACTG--TTCAGCTCAAAGGAGCTTACCATT
*
97321164 TCAGCTCGTAAGAGCTTACTGTTCAGCTCGATA-GAGCTTACCATT
1 TCAGCTCGTAAGAGCTTACTGTTCAGCTC-AAAGGAGCTTACCATT
* * *
97321209 TTAGCTC-AATAGAGCTCACTGTTCA
1 TCAGCTCGTA-AGAGCTTACTGTTCA
97321234 TATGCTCAGG
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
44 1 0.02
45 38 0.62
46 2 0.03
47 20 0.33
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (45 bp):
TCAGCTCGTAAGAGCTTACTGTTCAGCTCAAAGGAGCTTACCATT
Found at i:97325171 original size:29 final size:29
Alignment explanation
Indices: 97325133--97325275 Score: 126
Period size: 29 Copynumber: 4.9 Consensus size: 29
97325123 ATCAGTAGCC
* *
97325133 AAATCAAAAACCCTAAACCAATATCCCAA
1 AAATAAAAAACCCTAAACCAAAATCCCAA
** *
97325162 AAATTGAAAACCCTAAACAAAAATCCCAA
1 AAATAAAAAACCCTAAACCAAAATCCCAA
* * *
97325191 AAATAAAAAAACCTAAGA-GAAAATCCCCA
1 AAATAAAAAACCCTAA-ACCAAAATCCCAA
** * ** * *
97325220 AAATTGAAAACCTTAAAATAAAATCTCTA
1 AAATAAAAAACCCTAAACCAAAATCCCAA
*
97325249 AAATAAAAAACCCTAAACCATAATCCC
1 AAATAAAAAACCCTAAACCAAAATCCC
97325276 CATATTCAAC
Statistics
Matches: 89, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
28 1 0.01
29 87 0.98
30 1 0.01
ACGTcount: A:0.57, C:0.24, G:0.03, T:0.16
Consensus pattern (29 bp):
AAATAAAAAACCCTAAACCAAAATCCCAA
Found at i:97325264 original size:15 final size:15
Alignment explanation
Indices: 97325168--97325265 Score: 58
Period size: 15 Copynumber: 6.7 Consensus size: 15
97325158 CCAAAAATTG
*
97325168 AAAACCCT-AAACAA
1 AAAACCCTAAAATAA
* *
97325182 AAATCCCAAAAATAA
1 AAAACCCTAAAATAA
* * *
97325197 AAAAACCTAAGA-GA
1 AAAACCCTAAAATAA
* * **
97325211 AAATCCCCAAAATTG
1 AAAACCCTAAAATAA
*
97325226 AAAACCTTAAAAT-A
1 AAAACCCTAAAATAA
* *
97325240 AAATCTCTAAAATAA
1 AAAACCCTAAAATAA
97325255 AAAACCCTAAA
1 AAAACCCTAAA
97325266 CCATAATCCC
Statistics
Matches: 58, Mismatches: 23, Indels: 5
0.67 0.27 0.06
Matches are distributed among these distances:
14 25 0.43
15 33 0.57
ACGTcount: A:0.61, C:0.20, G:0.03, T:0.15
Consensus pattern (15 bp):
AAAACCCTAAAATAA
Found at i:97325276 original size:58 final size:57
Alignment explanation
Indices: 97325133--97325277 Score: 175
Period size: 58 Copynumber: 2.5 Consensus size: 57
97325123 ATCAGTAGCC
* *
97325133 AAATCAAAAACCCTAAACCAATATCCCAAAAATTGAAAACCCTAAACAAAAATCCCAA
1 AAATAAAAAACCCTAAACCAA-ATCCCCAAAATTGAAAACCCTAAACAAAAATCCCAA
* ** * * *
97325191 AAATAAAAAAACCTAAGAGAAAATCCCCAAAATTGAAAACCTTAAA-ATAAAATCTCTA
1 AAATAAAAAACCCTAA-ACCAAATCCCCAAAATTGAAAACCCTAAACA-AAAATCCCAA
97325249 AAATAAAAAACCCTAAACCATAATCCCCA
1 AAATAAAAAACCCTAAACCA-AATCCCCA
97325278 TATTCAACAA
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
57 3 0.04
58 67 0.92
59 3 0.04
ACGTcount: A:0.57, C:0.24, G:0.03, T:0.16
Consensus pattern (57 bp):
AAATAAAAAACCCTAAACCAAATCCCCAAAATTGAAAACCCTAAACAAAAATCCCAA
Found at i:97333529 original size:3 final size:3
Alignment explanation
Indices: 97333523--97333619 Score: 140
Period size: 3 Copynumber: 32.3 Consensus size: 3
97333513 ATATGAACGT
** * * * *
97333523 ATA ATA ATA ATA ACC ATA ATG ATG ATG ATG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
97333571 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
97333619 A
1 A
97333620 ATTTGCAAGT
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 88 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:97333680 original size:9 final size:9
Alignment explanation
Indices: 97333668--97333699 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
97333658 AATATAAAAA
97333668 ATAATAACG
1 ATAATAACG
97333677 ATAATAA--
1 ATAATAACG
97333684 ATAATAACG
1 ATAATAACG
97333693 ATAATAA
1 ATAATAA
97333700 AGGAAAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.33
9 14 0.67
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (9 bp):
ATAATAACG
Found at i:97333685 original size:16 final size:16
Alignment explanation
Indices: 97333661--97333700 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
97333651 TTTTAAAAAT
*
97333661 ATAAAAAATAATAACG
1 ATAATAAATAATAACG
97333677 ATAATAAATAATAACG
1 ATAATAAATAATAACG
97333693 ATAATAAA
1 ATAATAAA
97333701 GGAAAAAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (16 bp):
ATAATAAATAATAACG
Found at i:97333814 original size:21 final size:21
Alignment explanation
Indices: 97333765--97333826 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
97333755 AAACCAATTT
*
97333765 TAAATAAA-AAAGGAAATAATAAG
1 TAAATAAATAAA--AAATAA-AAA
97333788 TAAATAAATAAAAAATAAAAA
1 TAAATAAATAAAAAATAAAAA
*
97333809 TAAATACAT-AAAAATAAA
1 TAAATAAATAAAAAATAAA
97333827 TAATTTAGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
20 9 0.25
21 10 0.28
22 6 0.17
23 8 0.22
24 3 0.08
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.19
Consensus pattern (21 bp):
TAAATAAATAAAAAATAAAAA
Found at i:97333821 original size:14 final size:14
Alignment explanation
Indices: 97333793--97333829 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
97333783 ATAAGTAAAT
97333793 AAATAAA-AAATAA
1 AAATAAATAAATAA
*
97333806 AAATAAATACATAA
1 AAATAAATAAATAA
97333820 AAATAAATAA
1 AAATAAATAA
97333830 TTTAGACAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAATAAATAA
Found at i:97335602 original size:21 final size:21
Alignment explanation
Indices: 97335572--97335613 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
97335562 GTCTAGATTA
97335572 TTTATTTTTATGTA-TTATTT
1 TTTATTTTTATGTATTTATTT
*
97335592 TTTACTTTTTATTTATTTATTT
1 TTTA-TTTTTATGTATTTATTT
97335614 ACTTATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 9 0.47
22 6 0.32
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTATTTTTATGTATTTATTT
Found at i:97335616 original size:19 final size:18
Alignment explanation
Indices: 97335586--97335624 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
97335576 TTTTTATGTA
*
97335586 TTATTTTTTACTTTTTAT
1 TTATTTTTTACTTATTAT
97335604 TTATTTATTTACTTATTAT
1 TTATTT-TTTACTTATTAT
97335623 TT
1 TT
97335625 CCTTGTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
TTATTTTTTACTTATTAT
Found at i:97335634 original size:31 final size:30
Alignment explanation
Indices: 97335569--97335637 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
97335559 CCTGTCTAGA
*
97335569 TTATTTATTTTTATGTATTATTTTTTACTTT
1 TTATTTA-TTTTATGTATTATTATTTACTTT
* *
97335600 TTATTTA-TTTATTTACTTATTATTTCCTTGT
1 TTATTTATTTTATGTA-TTATTATTTACTT-T
97335631 TTATTTA
1 TTATTTA
97335638 AAATTGGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 7 0.21
30 11 0.33
31 15 0.45
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.71
Consensus pattern (30 bp):
TTATTTATTTTATGTATTATTATTTACTTT
Found at i:97342434 original size:19 final size:20
Alignment explanation
Indices: 97342382--97342436 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 20
97342372 CACCTCTTTT
*
97342382 TGCATTCATTTTGCATTCATCA
1 TGCATTAATTTT-CA-TCATCA
97342404 -GCATTACA-TTTCATCAT-A
1 TGCATTA-ATTTTCATCATCA
97342422 TGCATTAATTTTCAT
1 TGCATTAATTTTCAT
97342437 AAAAAGACCC
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
18 2 0.07
19 16 0.55
20 2 0.07
21 8 0.28
22 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.45
Consensus pattern (20 bp):
TGCATTAATTTTCATCATCA
Found at i:97344951 original size:10 final size:10
Alignment explanation
Indices: 97344917--97344962 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
97344907 ATAAAAAAGG
97344917 AAATAATAAGT
1 AAATAATAA-T
97344928 AAAT-A-AAT
1 AAATAATAAT
97344936 AAATAATAAT
1 AAATAATAAT
* *
97344946 ACATAAAAAT
1 AAATAATAAT
97344956 AAATAAT
1 AAATAAT
97344963 CTAGACAGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
8 5 0.17
9 3 0.10
10 17 0.59
11 4 0.14
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (10 bp):
AAATAATAAT
Found at i:97353660 original size:3 final size:3
Alignment explanation
Indices: 97353652--97353683 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
97353642 GAGAAACATA
97353652 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
97353684 AGAACGAGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:97359992 original size:3 final size:3
Alignment explanation
Indices: 97359980--97360010 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
97359970 GGTTAGCTTG
97359980 TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
97360011 CATGTAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:97361805 original size:11 final size:10
Alignment explanation
Indices: 97361757--97361818 Score: 70
Period size: 11 Copynumber: 5.8 Consensus size: 10
97361747 CACAAAAGTC
97361757 CTCTCATAATT
1 CTCTCA-AATT
97361768 CTCTCTAAATT
1 CTCTC-AAATT
97361779 CTCTTCAAATT
1 CTC-TCAAATT
97361790 CTCTCAAATTT
1 CTCTCAAA-TT
*
97361801 CTCTCACATT
1 CTCTCAAATT
*
97361811 TTCTCAAA
1 CTCTCAAA
97361819 GCTCTATTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
10 13 0.29
11 29 0.64
12 3 0.07
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.44
Consensus pattern (10 bp):
CTCTCAAATT
Found at i:97361815 original size:21 final size:21
Alignment explanation
Indices: 97361764--97361818 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
97361754 GTCCTCTCAT
97361764 AATTCTCTCTAAATTCTCTTCA
1 AATTCTCTC-AAATTCTCTTCA
97361786 AATTCTCTCAAATT-TCTCTCA
1 AATTCTCTCAAATTCTCT-TCA
* *
97361807 CATTTTCTCAAA
1 AATTCTCTCAAA
97361819 GCTCTATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 3 0.10
21 18 0.60
22 9 0.30
ACGTcount: A:0.29, C:0.27, G:0.00, T:0.44
Consensus pattern (21 bp):
AATTCTCTCAAATTCTCTTCA
Found at i:97362956 original size:7 final size:7
Alignment explanation
Indices: 97362944--97362976 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
97362934 TAGTCGTTTC
97362944 GTATTTA
1 GTATTTA
97362951 GTATTTA
1 GTATTTA
97362958 GTATTTA
1 GTATTTA
97362965 GTATTTA
1 GTATTTA
97362972 GTATT
1 GTATT
97362977 ATGTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:97363516 original size:30 final size:30
Alignment explanation
Indices: 97363480--97363538 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
97363470 CGCAGGCCTA
97363480 TCAACAGCGCCCACACAATCACCGGGCCCT
1 TCAACAGCGCCCACACAATCACCGGGCCCT
* * *
97363510 TCAACAGTGCCCATACAGTCACCGGGCCC
1 TCAACAGCGCCCACACAATCACCGGGCCC
97363539 AACACTTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.44, G:0.19, T:0.12
Consensus pattern (30 bp):
TCAACAGCGCCCACACAATCACCGGGCCCT
Found at i:97367437 original size:126 final size:125
Alignment explanation
Indices: 97367192--97367759 Score: 796
Period size: 126 Copynumber: 4.5 Consensus size: 125
97367182 CCAAATAGGA
* * ** *
97367192 ACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTTTTGTAATTTTACTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* * * * * *
97367257 GCTTGAAGCATTTTGGACACTATTTTTTCAGAAATGTCTTCTCGAAATTATTTTTTTAGAT
66 GCTTGACGCATTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA-TTTTTCAAAT
* * *
97367318 ACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAATAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* * *
97367383 GCTTGACGCGTTTTGGACACTATTTGTTCA-AAACCTTTTCTCAAAATTACTTTTTCAAAT
66 GCTTGACGCATTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA-TTTTTCAAAT
* * * *
97367443 ACTACTGTAGCAAAAAAGCGTCCACGTGAAAGTTTTTTTTAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* *
97367508 GCTTGACGCATTTTGAACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCGAAT
66 GCTTGACGCATTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA-TTTTTCAAAT
* * * ** * *
97367569 ACTACTGTAACAAAATAACGTCCATATGGAAGCTTGTTTCAGTAATTTTGCTAACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
*
97367634 GCTCGACGCATTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAAT
66 GCTTGACGCATTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA-TTTTTCAAAT
* *
97367695 ACAACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCGTCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
97367760 AATTTAATTA
Statistics
Matches: 390, Mismatches: 51, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
125 109 0.28
126 281 0.72
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (125 bp):
ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
GCTTGACGCATTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTCAAAT
Found at i:97367635 original size:251 final size:252
Alignment explanation
Indices: 97367192--97367759 Score: 827
Period size: 251 Copynumber: 2.3 Consensus size: 252
97367182 CCAAATAGGA
* * *
97367192 ACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTTTT-GTAATTTTACTGACAGTGCATCC
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAG-TTTTTTTTAGTAATTTTGCTGACAGTGCATCC
* * * * *
97367256 TGCTTGAAGCATTTTGGACACTATTTTTTCAGAAATGTCTTCTCGAAATTATTTTTTTAGATACT
65 TGCTTGAAGCATTTTGAACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTGAGATACT
* * * * * *
97367321 ACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAATAATTTTGCTGACAGTGCATCCTGCT
130 ACTGTAACAAAAGAACATCCACATGGAAGCTTGTTTCAATAATTTTGCTAACAGTGCATCCTGCT
* * *
97367386 TGACGCGTTTTGGACACTATTTGTTCA-AAACCTTTTCTCAAAATTACTTTTTCAAAT
195 CGACGCATTTTGGACACTATTTGTTCAGAAACCTCTTCTCAAAATTACTTTTTCAAAT
* *
97367443 ACTACTGTAGCAAAAAAGCGTCCACGTGAAAGTTTTTTTTAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGTTTTTTTTAGTAATTTTGCTGACAGTGCATCCT
*
97367508 GCTTGACGCATTTTGAACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCGA-ATACT
66 GCTTGAAGCATTTTGAACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTT-GAGATACT
* * * *
97367572 ACTGTAACAAAATAACGTCCATATGGAAGCTTGTTTCAGTAATTTTGCTAACAGTGCATCCTGCT
130 ACTGTAACAAAAGAACATCCACATGGAAGCTTGTTTCAATAATTTTGCTAACAGTGCATCCTGCT
* *
97367637 CGACGCATTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAAT
195 CGACGCATTTTGGACACTATTTGTTCAGAAACCTCTTCTCAAAATTACTTTTTCAAAT
* * * *
97367695 ACAACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCGTCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGTTTTTTTTAGTAATTTTGCTGACAGTGCATCCT
97367760 AATTTAATTA
Statistics
Matches: 282, Mismatches: 32, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
250 8 0.03
251 187 0.66
252 87 0.31
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (252 bp):
ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGTTTTTTTTAGTAATTTTGCTGACAGTGCATCCT
GCTTGAAGCATTTTGAACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTGAGATACTA
CTGTAACAAAAGAACATCCACATGGAAGCTTGTTTCAATAATTTTGCTAACAGTGCATCCTGCTC
GACGCATTTTGGACACTATTTGTTCAGAAACCTCTTCTCAAAATTACTTTTTCAAAT
Found at i:97368720 original size:60 final size:62
Alignment explanation
Indices: 97368634--97368749 Score: 164
Period size: 60 Copynumber: 1.9 Consensus size: 62
97368624 GTAGTACTTA
* *
97368634 AACTATTAATATGTGTTTTATCGTGGTACTAGTAATTTCATAAAATGTCTAATATGATACCT
1 AACTATTAATATGTGTTTTATCGTGGTACTAGTAATTTCATAAAATATCCAATATGATACCT
* * * *
97368696 AACTATT-A-ATGTGTTTTGTTGTGGTACTTGTACTTTCATAAAATATCCAATATG
1 AACTATTAATATGTGTTTTATCGTGGTACTAGTAATTTCATAAAATATCCAATATG
97368750 CTACTTGAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
60 40 0.83
61 1 0.02
62 7 0.15
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (62 bp):
AACTATTAATATGTGTTTTATCGTGGTACTAGTAATTTCATAAAATATCCAATATGATACCT
Found at i:97370976 original size:37 final size:38
Alignment explanation
Indices: 97370880--97370976 Score: 106
Period size: 39 Copynumber: 2.6 Consensus size: 38
97370870 ACACACCAGT
* ** *
97370880 TTGGCACCCAGTGTCTCATCGGATAATTCAAAGAATAAT
1 TTGGCACCCAGTGTCTCATTGGATAAACCAAAG-ATAAA
* * *
97370919 TTGACACCTAGTGTCTCATTGGCTAAACCAAAG-TAAA
1 TTGGCACCCAGTGTCTCATTGGATAAACCAAAGATAAA
*
97370956 TTGGCACCCAGTGCCTCATTG
1 TTGGCACCCAGTGTCTCATTG
97370977 AATATATCTG
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
37 21 0.44
39 27 0.56
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (38 bp):
TTGGCACCCAGTGTCTCATTGGATAAACCAAAGATAAA
Found at i:97384615 original size:17 final size:17
Alignment explanation
Indices: 97384593--97384627 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
97384583 ATAAGTTAAT
97384593 TTAATTAAATAAATTTC
1 TTAATTAAATAAATTTC
*
97384610 TTAATTAAATAATTTTC
1 TTAATTAAATAAATTTC
97384627 T
1 T
97384628 CAATCCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (17 bp):
TTAATTAAATAAATTTC
Found at i:97384808 original size:11 final size:11
Alignment explanation
Indices: 97384792--97384821 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
97384782 TCATAAATTA
97384792 AATTTTCAGGT
1 AATTTTCAGGT
97384803 AATTTTCAGGT
1 AATTTTCAGGT
97384814 AATTTTCA
1 AATTTTCA
97384822 TTTAGTGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.47
Consensus pattern (11 bp):
AATTTTCAGGT
Found at i:97387393 original size:23 final size:22
Alignment explanation
Indices: 97387375--97387420 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
97387365 CTAAGTGCTT
97387375 AAACAATAGGCACCGAAGTGTG
1 AAACAATAGGCACCGAAGTGTG
* * *
97387397 AATCAGTAGGCACCGTAGTG-G
1 AAACAATAGGCACCGAAGTGTG
97387418 AAA
1 AAA
97387421 TCCTGTACAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.39, C:0.17, G:0.28, T:0.15
Consensus pattern (22 bp):
AAACAATAGGCACCGAAGTGTG
Found at i:97389317 original size:33 final size:33
Alignment explanation
Indices: 97389274--97389435 Score: 175
Period size: 33 Copynumber: 4.9 Consensus size: 33
97389264 TCTTTCTGAG
* * **
97389274 TGGTACACACAAAGTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTGTACCTAACCTTTTCATA
**
97389307 TGGTATACACAAAGTGTACCTTTCCTTTTCATA
1 TGGTATACACAAAGTGTACCTAACCTTTTCATA
* * *
97389340 TGGTCTACAAAAAGTGTACATAACCTTTTCA-A
1 TGGTATACACAAAGTGTACCTAACCTTTTCATA
* * *
97389372 -GTGTACACACAAAGTGTACATAACCTTTTCATG
1 TG-GTATACACAAAGTGTACCTAACCTTTTCATA
* *
97389405 TGGTATACACAAAGTATACCTAACTTTTTCA
1 TGGTATACACAAAGTGTACCTAACCTTTTCA
97389436 CATTCGATAG
Statistics
Matches: 111, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
31 1 0.01
32 27 0.24
33 82 0.74
34 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.35
Consensus pattern (33 bp):
TGGTATACACAAAGTGTACCTAACCTTTTCATA
Found at i:97389384 original size:65 final size:65
Alignment explanation
Indices: 97389313--97389435 Score: 165
Period size: 65 Copynumber: 1.9 Consensus size: 65
97389303 CATATGGTAT
* ** * *
97389313 ACACAAAGTGTACCTTTCCTTTTCATATGGTCTACAAAAAGTGTACATAACCTTTTCAAGTGTAC
1 ACACAAAGTGTACATAACCTTTTCATATGGTATACAAAAAGTATACATAACCTTTTCAAGTGTAC
* * * *
97389378 ACACAAAGTGTACATAACCTTTTCATGTGGTATACACAAAGTATACCTAACTTTTTCA
1 ACACAAAGTGTACATAACCTTTTCATATGGTATACAAAAAGTATACATAACCTTTTCA
97389436 CATTCGATAG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
65 49 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (65 bp):
ACACAAAGTGTACATAACCTTTTCATATGGTATACAAAAAGTATACATAACCTTTTCAAGTGTAC
Found at i:97389463 original size:29 final size:29
Alignment explanation
Indices: 97389430--97389496 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
97389420 ATACCTAACT
* *
97389430 TTTTCACATTCGATAGCCGAAGCTATCTC
1 TTTTCACATTCGATAGCCAAAGCTATCCC
97389459 TTTTCACATTCGATAGCCAAAGCTATCCC
1 TTTTCACATTCGATAGCCAAAGCTATCCC
97389488 TTTTCACAT
1 TTTTCACAT
97389497 GGTACACACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.25, C:0.28, G:0.10, T:0.36
Consensus pattern (29 bp):
TTTTCACATTCGATAGCCAAAGCTATCCC
Found at i:97398115 original size:42 final size:42
Alignment explanation
Indices: 97398067--97398210 Score: 164
Period size: 42 Copynumber: 3.3 Consensus size: 42
97398057 CATAGTTCAA
*
97398067 CTATGGTCTTACACATCTTCACATAAT-GATACCATAGCCCAG
1 CTATGGTCTTACACATATTCACAT-ATCGATACCATAGCCCAG
* *
97398109 CTATGGTCTTACACATATTCATATATCGATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACATATCGATACCATAGCCCAG
* *
97398151 CTATGGTCTTACACGTAATCAGATATCACATATCGATGCCACAGCCCAG
1 CTATGGTCTTACAC---AT---AT-TCACATATCGATACCATAGCCCAG
97398200 CTATGGTCTTA
1 CTATGGTCTTA
97398211 TACGAATCAC
Statistics
Matches: 89, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
41 2 0.02
42 50 0.56
45 2 0.02
48 2 0.02
49 33 0.37
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
CTATGGTCTTACACATATTCACATATCGATACCATAGCCCAG
Found at i:97398202 original size:49 final size:48
Alignment explanation
Indices: 97398133--97398307 Score: 205
Period size: 47 Copynumber: 3.7 Consensus size: 48
97398123 ATATTCATAT
* * *
97398133 ATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCAGATATCACA
1 ATCGATGCCATAGCCCAGATATGGTCTTATACGTAATCACATATCACA
* * *
97398181 TATCGATGCCACAGCCCAGCTATGGTCTTATACG-AATCACATATCTCA
1 -ATCGATGCCATAGCCCAGATATGGTCTTATACGTAATCACATATCACA
* * * *
97398229 CT-GATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCAC-
1 ATCGATGCCATAGCCCAGATATGGTCTTATAC-GTAATCACATATCACA
*
97398275 ATCGATGCCATATCCCAGATATGGTCTTATACG
1 ATCGATGCCATAGCCCAGATATGGTCTTATACG
97398308 GAAATCACTT
Statistics
Matches: 111, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
46 28 0.25
47 40 0.36
48 12 0.11
49 31 0.28
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (48 bp):
ATCGATGCCATAGCCCAGATATGGTCTTATACGTAATCACATATCACA
Found at i:97398252 original size:46 final size:48
Alignment explanation
Indices: 97398133--97398307 Score: 191
Period size: 49 Copynumber: 3.7 Consensus size: 48
97398123 ATATTCATAT
* * * *
97398133 ATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCAG-ATATCA-CAT
1 ATCGATGCCATATCCCAGATATGGTCTTATACG-AAT-AGCATAT-ATCAC
* * * *
97398182 ATCGATGCCACAGCCCAGCTATGGTCTTATACGAATCA-CATATCTCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAAT-AGCATATATCAC
*
97398230 -T-GATGCCATATCCCAGATATGGTCTTATAC-AGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATAGCATATATCAC
97398275 ATCGATGCCATATCCCAGATATGGTCTTATACG
1 ATCGATGCCATATCCCAGATATGGTCTTATACG
97398308 GAAATCACTT
Statistics
Matches: 111, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
44 1 0.01
45 11 0.10
46 27 0.24
47 30 0.27
48 11 0.10
49 31 0.28
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (48 bp):
ATCGATGCCATATCCCAGATATGGTCTTATACGAATAGCATATATCAC
Found at i:97398315 original size:95 final size:94
Alignment explanation
Indices: 97398136--97398307 Score: 240
Period size: 95 Copynumber: 1.8 Consensus size: 94
97398126 TTCATATATC
* * *
97398136 GATGCCATAGCCCAGCTATGGTCTTACACGTAATCAGATATCACATATCGATGCCACAGCCCAGC
1 GATGCCATAGCCCAGATATGGTCTTACACGTAAGCAGATATCACA-ATCGATGCCACAGCCCAGA
97398201 TATGGTCTTATACGAATCACATATCTCACT
65 TATGGTCTTATACGAATCACATATCTCACT
* * * * *
97398231 GATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCAC-ATCGATGCCATATCCCAGA
1 GATGCCATAGCCCAGATATGGTCTTACAC-GTAAGCAGATATCACAATCGATGCCACAGCCCAGA
97398294 TATGGTCTTATACG
65 TATGGTCTTATACG
97398308 GAAATCACTT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
93 30 0.44
95 36 0.53
96 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (94 bp):
GATGCCATAGCCCAGATATGGTCTTACACGTAAGCAGATATCACAATCGATGCCACAGCCCAGAT
ATGGTCTTATACGAATCACATATCTCACT
Found at i:97398360 original size:31 final size:31
Alignment explanation
Indices: 97398325--97398473 Score: 212
Period size: 31 Copynumber: 4.8 Consensus size: 31
97398315 CTTGTCACTT
97398325 GTAGCCGAAGCTACCA-TTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTT-TTCACTGATCAG
* * *
97398356 GTAGCCGGAGCTACCATTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
97398387 GTAGCC-AGAGCTACCACTTTTCACTAATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
* *
97398418 GTAGCAGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
97398449 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
97398474 TGTCATTTGT
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
31 102 0.97
32 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:97398540 original size:50 final size:51
Alignment explanation
Indices: 97398449--97398577 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
97398439 CACTGATTAG
* **
97398449 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTAGCACTTGTCATTTGTCCTTGATCAGATAAGT
* *
97398500 GTAGCCGAAGTTATTACTTAGCACTT-TCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTAGCACTTGTCATTTGTCCTTGATCAGATAAGT
*
97398550 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTAGCACTTGT
97398578 TGCCATGGTC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 47 0.68
51 22 0.32
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTAGCACTTGTCATTTGTCCTTGATCAGATAAGT
Found at i:97400824 original size:33 final size:33
Alignment explanation
Indices: 97400781--97400942 Score: 186
Period size: 33 Copynumber: 4.9 Consensus size: 33
97400771 TCTTTCTGAG
* **
97400781 TGGTACACACAAAGTATAGC-TTTCCTTTTCATA
1 TGGTATACACAAAGTATA-CATAACCTTTTCATA
* **
97400814 TGGTATACACAAAGTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACATAACCTTTTCATA
*
97400847 TGGTATACACAAAGTGTACATAACCTTTTCA-A
1 TGGTATACACAAAGTATACATAACCTTTTCATA
* * *
97400879 -GTGTACACACAAAGTGTACATAACCTTTTCATG
1 TG-GTATACACAAAGTATACATAACCTTTTCATA
*
97400912 TGGTATACACAAAGTATACCTAACCTTTTCA
1 TGGTATACACAAAGTATACATAACCTTTTCA
97400943 CATTCGATAG
Statistics
Matches: 115, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
31 1 0.01
32 30 0.26
33 83 0.72
34 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (33 bp):
TGGTATACACAAAGTATACATAACCTTTTCATA
Found at i:97402187 original size:93 final size:94
Alignment explanation
Indices: 97402028--97402215 Score: 297
Period size: 93 Copynumber: 2.0 Consensus size: 94
97402018 CTCCTCTAGG
* *
97402028 GTGTATTTATAGGCTTTGGAATGCCTAAAAACCCTCGAAATTAGCCTTTTCCAAATTGGACTCAA
1 GTGTATTTATAGGCTTTGAAATGCATAAAAACCCTCGAAATTAGCCTTTTCCAAATTGGACTCAA
*
97402093 CTT-GGGATCGGCAGGGACACACCCGTGT
66 CTTGGGGATCGGCAAGGACACACCCGTGT
* * *
97402121 GTGTATTTATAGGCTTTGAAATGCATAAGAACCCTCGAAATTAGCCTTTTTCGAATTGGACTCAA
1 GTGTATTTATAGGCTTTGAAATGCATAAAAACCCTCGAAATTAGCCTTTTCCAAATTGGACTCAA
* *
97402186 CTTGGGGCTCGGCAAGGACACGCCCGTGT
66 CTTGGGGATCGGCAAGGACACACCCGTGT
97402215 G
1 G
97402216 ACACGCCCGG
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 63 0.73
94 23 0.27
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (94 bp):
GTGTATTTATAGGCTTTGAAATGCATAAAAACCCTCGAAATTAGCCTTTTCCAAATTGGACTCAA
CTTGGGGATCGGCAAGGACACACCCGTGT
Found at i:97414552 original size:13 final size:13
Alignment explanation
Indices: 97414531--97414570 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
97414521 GCTCGGCAAG
97414531 GACACGCCCGTGT
1 GACACGCCCGTGT
*
97414544 GACATGCCCGTGT
1 GACACGCCCGTGT
*
97414557 GACACACCCGTGT
1 GACACGCCCGTGT
97414570 G
1 G
97414571 CGATTACTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.17, C:0.35, G:0.30, T:0.17
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:97435692 original size:16 final size:17
Alignment explanation
Indices: 97435658--97435696 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
97435648 GTCAAAATTC
*
97435658 TCTTCTTCTTTTTCCCT
1 TCTTCTCCTTTTTCCCT
*
97435675 TCTTCTCCTTTTT-TCT
1 TCTTCTCCTTTTTCCCT
97435691 TCTTCT
1 TCTTCT
97435697 TCGATTGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (17 bp):
TCTTCTCCTTTTTCCCT
Found at i:97436225 original size:17 final size:18
Alignment explanation
Indices: 97436200--97436235 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
97436190 CAAATAGGCA
97436200 GTGTAGG-CCACACGGGT
1 GTGTAGGCCCACACGGGT
*
97436217 GTGTGGGCCCACACGGGT
1 GTGTAGGCCCACACGGGT
97436235 G
1 G
97436236 AACCACACGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.14, C:0.25, G:0.44, T:0.17
Consensus pattern (18 bp):
GTGTAGGCCCACACGGGT
Found at i:97438218 original size:26 final size:25
Alignment explanation
Indices: 97438183--97438526 Score: 97
Period size: 26 Copynumber: 14.5 Consensus size: 25
97438173 AAAGAAAGAT
97438183 AATTTAAATGAAAAGAGAAAAAATTA
1 AATTTAAATGAAAAGAGAAAAAA-TA
*
97438209 AATTTAAATGAAATGAGAAAAAA-A
1 AATTTAAATGAAAAGAGAAAAAATA
* * *
97438233 AATTAAAATG-GAA-AG-AAAGAT-
1 AATTTAAATGAAAAGAGAAAAAATA
* * *
97438254 AGTTTAAATGAAATGAGGAAGAAATTA
1 AATTTAAATGAAAAGA-GAA-AAAATA
*
97438281 AATTTAAAT--AAA-A-AAAAGAT-
1 AATTTAAATGAAAAGAGAAAAAATA
*
97438301 AATTTAAATGAAATA-A-AAAAATTA
1 AATTTAAATGAAA-AGAGAAAAAATA
* * *
97438325 AATTTACATG-GAA-A-AAAATATA
1 AATTTAAATGAAAAGAGAAAAAATA
*
97438347 AA-TGAAATGAGAAA-A-AAATTAAAT-
1 AATTTAAATGA-AAAGAGAAA--AAATA
* ** * *
97438371 GA---AAATG-GGA-AG-ATAGAT-
1 AATTTAAATGAAAAGAGAAAAAATA
*
97438389 AATTTAAATGAAATGAGAAAAAAAATTA
1 AATTTAAATGAAA--AGAGAAAAAA-TA
* * *
97438417 ATTTTAAATG-TAA-A-AAAAGAT-
1 AATTTAAATGAAAAGAGAAAAAATA
*
97438438 AATTTAAATGAAATGAGAAAAAATTA
1 AATTTAAATGAAAAGAGAAAAAA-TA
* *
97438464 AATATAAATGAAATGAGAAAAAA-A
1 AATTTAAATGAAAAGAGAAAAAATA
*
97438488 AA-TTAAATGTAAATG-GAAAATAATA
1 AATTTAAATG-AAAAGAGAAAA-AATA
97438513 TAATTTAAATGAAA
1 -AATTTAAATGAAA
97438527 TGTAAATGGA
Statistics
Matches: 237, Mismatches: 45, Indels: 72
0.67 0.13 0.20
Matches are distributed among these distances:
18 4 0.02
20 12 0.05
21 34 0.14
22 24 0.10
23 33 0.14
24 39 0.16
25 10 0.04
26 55 0.23
27 17 0.07
28 9 0.04
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.25
Consensus pattern (25 bp):
AATTTAAATGAAAAGAGAAAAAATA
Found at i:97438244 original size:71 final size:71
Alignment explanation
Indices: 97438161--97438426 Score: 232
Period size: 71 Copynumber: 3.8 Consensus size: 71
97438151 AGAAAAATGT
97438161 AAATTAAAATGGAAAGAAAGATAATTTAAATGAAAAGAGAAAAAATTAAATTTAAATGAAATGAG
1 AAATTAAAATGGAAAGAAAGATAATTTAAATGAAAAGAGAAAAAATTAAATTTAAATGAAATGAG
97438226 AAAAAA
66 AAAAAA
* * *
97438232 AAATTAAAATGGAAAGAAAGATAGTTTAAATGAAATGAGGAAGAAATTAAATTTAAAT-AAA--A
1 AAATTAAAATGGAAAGAAAGATAATTTAAATGAAAAGA-GAAAAAATTAAATTTAAATGAAATGA
*
97438294 -AAAAGA
65 GAAAAAA
* * * * * * * *
97438300 TAATTTAAAT-GAAATAAA-A-AAATTAAATTTACATG-G--AAAA--AAATATAAATGAAATGA
1 AAATTAAAATGGAAAGAAAGATAATTTAAA-TGAAAAGAGAAAAAATTAAATTTAAATGAAATGA
97438357 GAAAAAAA
65 G-AAAAAA
* * * * *
97438365 TTAAATGAAAATGGGAAGATAGATAATTTAAATGAAATGAGAAAAAAAATTAATTTTAAATG
1 --AAATTAAAATGGAAAGAAAGATAATTTAAATGAAA--AGAGAAAAAATTAAATTTAAATG
97438427 TAAAAAAAGA
Statistics
Matches: 149, Mismatches: 27, Indels: 33
0.71 0.13 0.16
Matches are distributed among these distances:
60 9 0.06
61 3 0.02
62 3 0.02
63 1 0.01
64 1 0.01
65 11 0.07
66 6 0.04
67 14 0.09
68 18 0.12
69 5 0.03
70 7 0.05
71 40 0.27
72 18 0.12
74 4 0.03
76 9 0.06
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (71 bp):
AAATTAAAATGGAAAGAAAGATAATTTAAATGAAAAGAGAAAAAATTAAATTTAAATGAAATGAG
AAAAAA
Found at i:97438282 original size:92 final size:89
Alignment explanation
Indices: 97438186--97438523 Score: 271
Period size: 92 Copynumber: 3.6 Consensus size: 89
97438176 GAAAGATAAT
*
97438186 TTAAATGAAAAGAGAAAAAATTAAATTTAAATGAAATGAGAAAAAAAAATTAAAATGGAAAGAAA
1 TTAAATGAAAAGAGAAAAAA-TAAATTTAAATGAAATGAGAAAAAAAAATTTAAATGGAAA-AAA
*
97438251 GATAGTTTAAATGAAATGAGGAAGAAA
64 GATA-TTTAAATGAAATGAGGAAAAAA
** * * * *
97438278 TTAAATTTAAATAAAAAAAAGATAATTTAAATGAAAT-A-AAAAAATTAAATTTACATGGAAAAA
1 TTAAATGAAAAGAGAAAAAATA-AATTTAAATGAAATGAGAAAAAA--AAATTTAAATGGAAAAA
*
97438341 A-ATA--TAAATGAAATGAGAAAAAAA
63 AGATATTTAAATGAAATGAGGAAAAAA
* * *
97438365 TTAAATGAAAATGGGAAGATAGAT-AATTTAAATGAAATGAGAAAAAAAATTAATTTTAAATGTA
1 TTAAATGAAAA-GAGAA-A-AAATAAATTTAAATGAAATGAG-AAAAAAA--AA-TTTAAATG-G
*
97438429 AAAAAAGATAATTTAAATGAAATGAGAAAAAATTAAA
58 AAAAAAGAT-ATTTAAATGAAATGAG--GAAA--AAA
*
97438466 TATAAATGAAATGAGAAAAAA-AAA-TTAAATGTAAATG-GAAAATAATATAATTTAAATG
1 T-TAAATGAAAAGAGAAAAAATAAATTTAAATG-AAATGAGAAAA-AA-A-AATTTAAATG
97438524 AAATGTAAAT
Statistics
Matches: 199, Mismatches: 21, Indels: 47
0.75 0.08 0.18
Matches are distributed among these distances:
87 27 0.14
88 16 0.08
89 3 0.02
90 11 0.06
91 13 0.07
92 50 0.25
93 6 0.03
94 2 0.01
95 1 0.01
97 25 0.13
98 13 0.07
99 14 0.07
100 1 0.01
101 8 0.04
102 9 0.05
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.25
Consensus pattern (89 bp):
TTAAATGAAAAGAGAAAAAATAAATTTAAATGAAATGAGAAAAAAAAATTTAAATGGAAAAAAGA
TATTTAAATGAAATGAGGAAAAAA
Found at i:97438348 original size:22 final size:22
Alignment explanation
Indices: 97438257--97438474 Score: 98
Period size: 21 Copynumber: 9.6 Consensus size: 22
97438247 GAAAGATAGT
* *
97438257 TTAAA-TGAAATGAGGAAGAAA
1 TTAAATTGAAATGAGAAAAAAA
*
97438278 TTAAATTTAAAT-A-AAAAAAA
1 TTAAATTGAAATGAGAAAAAAA
* * *
97438298 -GATAATTTAAATGAAATAAAAAAA
1 TTA-AATTGAAATG--AGAAAAAAA
* *
97438322 TTAAATTTACATG-GAAAAAAA
1 TTAAATTGAAATGAGAAAAAAA
97438343 TATAAA-TGAAATGAGAAAAAAA
1 T-TAAATTGAAATGAGAAAAAAA
*
97438365 TTAAA-TGAAAATGGGAAGATAGATAA
1 TTAAATTG-AAATGAGAA-A-A-A-AA
97438391 TTTAAA-TGAAATGAGAAAAAAAA
1 -TTAAATTGAAATGAG-AAAAAAA
* * *
97438414 TTAATTTTAAATGTAAAAAAAGATAA
1 TTAAATTGAAATG--AGAAAA-A-AA
97438440 TTTAAA-TGAAATGAG-AAAAAA
1 -TTAAATTGAAATGAGAAAAAAA
97438461 TTAAATAT-AAATGA
1 TTAAAT-TGAAATGA
97438475 AATGAGAAAA
Statistics
Matches: 156, Mismatches: 17, Indels: 48
0.71 0.08 0.22
Matches are distributed among these distances:
19 1 0.01
20 19 0.12
21 33 0.21
22 32 0.21
23 13 0.08
24 23 0.15
25 5 0.03
26 17 0.11
27 13 0.08
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.26
Consensus pattern (22 bp):
TTAAATTGAAATGAGAAAAAAA
Found at i:97438433 original size:21 final size:21
Alignment explanation
Indices: 97438406--97438447 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
97438396 ATGAAATGAG
97438406 AAAAAAA-ATTAATTTTAAATGT
1 AAAAAAAGA-TAA-TTTAAATGT
97438428 AAAAAAAGATAATTTAAATG
1 AAAAAAAGATAATTTAAATG
97438448 AAATGAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 10 0.53
23 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (21 bp):
AAAAAAAGATAATTTAAATGT
Found at i:97438438 original size:49 final size:48
Alignment explanation
Indices: 97438209--97438473 Score: 295
Period size: 49 Copynumber: 5.8 Consensus size: 48
97438199 GAAAAAATTA
* *
97438209 AATTTAAATGAAATGAG-AAAAAA--AAATTAAAATGGAAAGAAAGAT
1 AATTTAAATGAAATGAGAAAAAAATTAAATTTAAATGGAAAAAAAGAT
* * * *
97438254 AGTTTAAATGAAATGAGGAAGAAATTAAATTTAAAT-AAAAAAAAGAT
1 AATTTAAATGAAATGAGAAAAAAATTAAATTTAAATGGAAAAAAAGAT
*
97438301 AATTTAAATGAAAT---AAAAAAATTAAATTTACATGG-AAAAAA-AT
1 AATTTAAATGAAATGAGAAAAAAATTAAATTTAAATGGAAAAAAAGAT
** * * *
97438344 -A--TAAATGAAATGAGAAAAAAATTAAATGAAAATGGGAAGATAGAT
1 AATTTAAATGAAATGAGAAAAAAATTAAATTTAAATGGAAAAAAAGAT
* *
97438389 AATTTAAATGAAATGAGAAAAAAAATTAATTTTAAATGTAAAAAAAGAT
1 AATTTAAATGAAATGAG-AAAAAAATTAAATTTAAATGGAAAAAAAGAT
*
97438438 AATTTAAATGAAATGAG-AAAAAATTAAATATAAATG
1 AATTTAAATGAAATGAGAAAAAAATTAAATTTAAATG
97438474 AAATGAGAAA
Statistics
Matches: 183, Mismatches: 24, Indels: 24
0.79 0.10 0.10
Matches are distributed among these distances:
40 10 0.05
42 1 0.01
43 20 0.11
44 26 0.14
45 18 0.10
46 6 0.03
47 39 0.21
48 22 0.12
49 41 0.22
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.25
Consensus pattern (48 bp):
AATTTAAATGAAATGAGAAAAAAATTAAATTTAAATGGAAAAAAAGAT
Found at i:97438462 original size:21 final size:21
Alignment explanation
Indices: 97438208--97438486 Score: 86
Period size: 21 Copynumber: 12.1 Consensus size: 21
97438198 AGAAAAAATT
97438208 AAATTTAAATGAAATGAGAAAAAA
1 AAATTTAAATGAAATGAG---AAA
*
97438232 AAATTAAAATGGAAA-GA-AAGA
1 AAATTTAAAT-GAAATGAGAA-A
* * *
97438253 TAGTTTAAATGAAATGAGGAAG
1 AAATTTAAATGAAATGA-GAAA
* * *
97438275 AAA-TTAAATTTAAATAAAAAAAA
1 AAATTTAAA-TGAAAT--GAGAAA
97438298 GATAATTTAAATGAAAT-A-AAA
1 -A-AATTTAAATGAAATGAGAAA
* *
97438319 AAA-TTAAATTTACATG-GAAAA
1 AAATTTAAA-TGAAATGAG-AAA
*
97438340 AAATATAAATGAAATGAGAAA
1 AAATTTAAATGAAATGAGAAA
*
97438361 AAAATTAAATGAAAATGGGAAGATAGA
1 AAATTTAAATG-AAAT--G-AGA-A-A
*
97438388 TAATTTAAATGAAATGAGAAAA
1 AAATTTAAATGAAATGAG-AAA
* * * *
97438410 AAAATTAATTTTAAATGTAAAAAAA
1 AAATTTAA-ATGAAATG---AGAAA
97438435 GATAATTTAAATGAAATGAGAAA
1 -A-AATTTAAATGAAATGAGAAA
97438458 AAATTAAATATAAATGAAATGAGAAA
1 AAA-T---T-TAAATGAAATGAGAAA
97438484 AAA
1 AAA
97438487 AAATTAAATG
Statistics
Matches: 190, Mismatches: 30, Indels: 68
0.66 0.10 0.24
Matches are distributed among these distances:
18 5 0.03
19 6 0.03
20 7 0.04
21 43 0.23
22 25 0.13
23 17 0.09
24 16 0.08
25 18 0.09
26 37 0.19
27 16 0.08
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.24
Consensus pattern (21 bp):
AAATTTAAATGAAATGAGAAA
Found at i:97438494 original size:49 final size:48
Alignment explanation
Indices: 97438187--97438526 Score: 194
Period size: 49 Copynumber: 7.2 Consensus size: 48
97438177 AAAGATAATT
*
97438187 TAAATGAAAAGAGAAAAAATTAAATTTAAATGAAATGAGAAAAAAA--AATTA
1 TAAATG-AAA-AGAAAAAA--AAA-TTAAATGAAATGAGAAAAAAATTAAATA
* * * ** * * *
97438238 -AAATGGAAAGAAAGATAGTTTAAATGAAATGAGGAAGAAATTAAATT
1 TAAATGAAAAGAAAAAAAAATTAAATGAAATGAGAAAAAAATTAAATA
* * *
97438285 TAAAT-AAAA-AAAAGATAATTTAAATGAAAT---AAAAAAATTAAATT
1 TAAATGAAAAGAAAA-AAAAATTAAATGAAATGAGAAAAAAATTAAATA
* *
97438329 TACATG----GAAAAAAATA-TAAATGAAATGAGAAAAAAATTAAATGA
1 TAAATGAAAAGAAAAAAAAATTAAATGAAATGAGAAAAAAATTAAAT-A
** * * * * * *
97438373 -AAATGGGAAGATAGATAATTTAAATGAAATGAGAAAAAAAATTAATTT
1 TAAATGAAAAGAAAAAAAAATTAAATGAAATGAG-AAAAAAATTAAATA
* * *
97438421 TAAATGTAAAA-AAAGATAATTTAAATGAAATGAG-AAAAAATTAAATA
1 TAAATG-AAAAGAAAAAAAAATTAAATGAAATGAGAAAAAAATTAAATA
* *
97438468 TAAATGAAATGAGAAAAAAAAATTAAATGTAAATG-GAAAATAA-TATAATT
1 TAAATGAAA--AGAAAAAAAAATTAAATG-AAATGAGAAAAAAATTA-AATA
97438518 TAAATGAAA
1 TAAATGAAA
97438527 TGTAAATGGA
Statistics
Matches: 228, Mismatches: 37, Indels: 49
0.73 0.12 0.16
Matches are distributed among these distances:
40 10 0.04
41 2 0.01
42 4 0.02
43 17 0.07
44 16 0.07
45 19 0.08
46 7 0.03
47 43 0.19
48 24 0.11
49 57 0.25
50 29 0.13
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.24
Consensus pattern (48 bp):
TAAATGAAAAGAAAAAAAAATTAAATGAAATGAGAAAAAAATTAAATA
Found at i:97438527 original size:26 final size:26
Alignment explanation
Indices: 97438345--97438528 Score: 146
Period size: 26 Copynumber: 7.4 Consensus size: 26
97438335 GAAAAAAATA
97438345 TAAATGAAATGAG--AAAA-A-AA-T
1 TAAATGAAATGAGAAAAAAGATAATT
* * *
97438366 TAAATGAAAATGGGAAGATAGATAATT
1 TAAATG-AAATGAGAAAAAAGATAATT
*
97438393 TAAATGAAATGAGAAAAAAAATTAATT
1 TAAATGAAATGAGAAAAAAGA-TAATT
97438420 T---T-AAATGTA-AAAAAAGATAATT
1 TAAATGAAATG-AGAAAAAAGATAATT
* *
97438442 TAAATGAAATGAGAAAAAA-TTAAATA
1 TAAATGAAATGAGAAAAAAGAT-AATT
97438468 TAAATGAAATGAGAAAAAA-A-AA-T
1 TAAATGAAATGAGAAAAAAGATAATT
*
97438491 TAAATGTAAATG-GAAAATAATATAATT
1 TAAATG-AAATGAGAAAA-AAGATAATT
97438518 TAAATGAAATG
1 TAAATGAAATG
97438529 TAAATGGAAA
Statistics
Matches: 132, Mismatches: 12, Indels: 33
0.75 0.07 0.19
Matches are distributed among these distances:
21 6 0.05
22 12 0.09
23 23 0.17
24 13 0.10
25 5 0.04
26 53 0.40
27 20 0.15
ACGTcount: A:0.61, C:0.00, G:0.14, T:0.26
Consensus pattern (26 bp):
TAAATGAAATGAGAAAAAAGATAATT
Found at i:97438534 original size:11 final size:10
Alignment explanation
Indices: 97438519--97438608 Score: 65
Period size: 11 Copynumber: 8.3 Consensus size: 10
97438509 AATATAATTT
97438519 AAATGAAATG
1 AAATGAAATG
97438529 TAAATGGAAATG
1 -AAAT-GAAATG
* *
97438541 AAATTTAAATTC
1 AAA-TGAAA-TG
97438553 AAATGAAA-G
1 AAATGAAATG
97438562 AAATAGAAATAG
1 AAAT-GAAAT-G
*
97438574 AAATTAAATGG
1 AAATGAAAT-G
*
97438585 AATTGAAATAG
1 AAATGAAAT-G
97438596 AAATGAAATG
1 AAATGAAATG
97438606 AAA
1 AAA
97438609 AAATAAGGTG
Statistics
Matches: 63, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
9 4 0.06
10 8 0.13
11 35 0.56
12 16 0.25
ACGTcount: A:0.59, C:0.01, G:0.17, T:0.23
Consensus pattern (10 bp):
AAATGAAATG
Found at i:97438541 original size:17 final size:17
Alignment explanation
Indices: 97438519--97438608 Score: 82
Period size: 17 Copynumber: 5.5 Consensus size: 17
97438509 AATATAATTT
97438519 AAATGAAATGTAAATGG
1 AAATGAAATGTAAATGG
* **
97438536 AAATGAAATTTAAATTC
1 AAATGAAATGTAAATGG
*
97438553 AAATGAAA-G-AAATAG
1 AAATGAAATGTAAATGG
97438568 AAATAGAAAT-TAAATGG
1 AAAT-GAAATGTAAATGG
*
97438585 AATTGAAATAG-AAAT-G
1 AAATGAAAT-GTAAATGG
97438601 AAATGAAA
1 AAATGAAA
97438609 AAATAAGGTG
Statistics
Matches: 59, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
15 8 0.14
16 17 0.29
17 34 0.58
ACGTcount: A:0.59, C:0.01, G:0.17, T:0.23
Consensus pattern (17 bp):
AAATGAAATGTAAATGG
Found at i:97438569 original size:6 final size:5
Alignment explanation
Indices: 97438519--97438608 Score: 65
Period size: 6 Copynumber: 16.6 Consensus size: 5
97438509 AATATAATTT
* *
97438519 AAATG AAATG TAAATGG AAATG AAATTT AAATTC AAATG AAA-G AAATAG
1 AAATG AAATG -AAAT-G AAATG AAA-TG AAA-TG AAATG AAATG AAAT-G
* *
97438568 AAATAG AAATT AAATGG AATTG AAATAG AAATG AAATG AAA
1 AAAT-G AAATG AAAT-G AAATG AAAT-G AAATG AAATG AAA
97438609 AAATAAGGTG
Statistics
Matches: 71, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
4 4 0.06
5 30 0.42
6 36 0.51
7 1 0.01
ACGTcount: A:0.59, C:0.01, G:0.17, T:0.23
Consensus pattern (5 bp):
AAATG
Found at i:97438609 original size:125 final size:123
Alignment explanation
Indices: 97438340--97438611 Score: 284
Period size: 125 Copynumber: 2.2 Consensus size: 123
97438330 ACATGGAAAA
* *
97438340 AAATATAAATGAAATGAGAAAAAAATTAAATGAAAATGGGAAGATAGATAATTTAAATGAAATGA
1 AAATATAAATGAAATGAAAAAAAAATTAAATGAAAATGGGAAAATAGATAATTTAAATGAAATGA
* * **
97438405 GAAAAAAAATTAATTTTAAATGTAAAAAAAGATAATTTAAATGAAATGAGAAAAAATT
66 GAAAAAAAATGAAATTTAAATGTAAAAAAAGATAATAGAAATGAAATGAGAAAAAATT
* *
97438463 AAATATAAATGAAATGAGAAAAAAAAATTAAATGTAAAT-GGAAAATAATATAATTTAAATGAAA
1 AAATATAAATGAAAT--GAAAAAAAAATTAAATGAAAATGGGAAAAT-AGATAATTTAAATGAAA
*** * * **
97438527 TGTA-AATGGAAATGAAATTTAAAT-TCAAATGAAAGA-AATAGAAATAGAAATTA-AATGGAAT
63 TG-AGAAAAAAAATGAAATTTAAATGT-AAA-AAAAGATAATAGAAAT-GAAATGAGAA-AAAAT
97438588 T
123 T
*
97438589 GAAATAGAAATGAAATGAAAAAA
1 -AAATATAAATGAAATGAAAAAA
97438612 TAAGGTGAAA
Statistics
Matches: 124, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
123 15 0.12
124 7 0.06
125 72 0.58
126 16 0.13
127 14 0.11
ACGTcount: A:0.61, C:0.00, G:0.14, T:0.25
Consensus pattern (123 bp):
AAATATAAATGAAATGAAAAAAAAATTAAATGAAAATGGGAAAATAGATAATTTAAATGAAATGA
GAAAAAAAATGAAATTTAAATGTAAAAAAAGATAATAGAAATGAAATGAGAAAAAATT
Found at i:97439010 original size:21 final size:22
Alignment explanation
Indices: 97438974--97439015 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
97438964 CTAATTAATA
97438974 TGAAAAAAAATATGAAATGAAT
1 TGAAAAAAAATATGAAATGAAT
*
97438996 TGAAAAAAAAT-TGAATTGAA
1 TGAAAAAAAATATGAAATGAA
97439016 AAAAGATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (22 bp):
TGAAAAAAAATATGAAATGAAT
Found at i:97439027 original size:15 final size:16
Alignment explanation
Indices: 97438993--97439031 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
97438983 ATATGAAATG
*
97438993 AATTGAAAAAAAATTG
1 AATTGAAAAAAAATTA
*
97439009 AATTGAAAAAAGA-TA
1 AATTGAAAAAAAATTA
97439024 AATTGAAA
1 AATTGAAA
97439032 TGAGACTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.64, C:0.00, G:0.13, T:0.23
Consensus pattern (16 bp):
AATTGAAAAAAAATTA
Found at i:97439114 original size:5 final size:5
Alignment explanation
Indices: 97439104--97439204 Score: 67
Period size: 5 Copynumber: 18.0 Consensus size: 5
97439094 TGACAAAAAT
* *
97439104 AATGA AATGA AATGTTA AATGA AATGTGA ATATGA AATGA AATGTA ATTTGT
1 AATGA AATGA AATG--A AATGA AA--TGA A-ATGA AATGA AATG-A A-ATGA
* *
97439156 AATGA ATATGA AATTA AATGA AATGTTA AATGA ATATAA AATGA AATGA
1 AATGA A-ATGA AATGA AATGA AATG--A AATGA A-ATGA AATGA AATGA
97439205 TGATTATCAA
Statistics
Matches: 77, Mismatches: 8, Indels: 22
0.72 0.07 0.21
Matches are distributed among these distances:
5 44 0.57
6 16 0.21
7 16 0.21
8 1 0.01
ACGTcount: A:0.52, C:0.00, G:0.17, T:0.31
Consensus pattern (5 bp):
AATGA
Found at i:97439123 original size:12 final size:12
Alignment explanation
Indices: 97439108--97439203 Score: 65
Period size: 12 Copynumber: 7.8 Consensus size: 12
97439098 AAAAATAATG
97439108 AAATGAAATGTT
1 AAATGAAATGTT
*
97439120 AAATGAAATGTG
1 AAATGAAATGTT
97439132 AATATGAAATG--
1 AA-ATGAAATGTT
*
97439143 AAATGTAAT-TT
1 AAATGAAATGTT
*
97439154 GTAATGAATATGAAATT
1 -AAATGAA-ATG---TT
97439171 AAATGAAATGTT
1 AAATGAAATGTT
* *
97439183 AAATG-AATATA
1 AAATGAAATGTT
97439194 AAATGAAATG
1 AAATGAAATG
97439204 ATGATTATCA
Statistics
Matches: 66, Mismatches: 8, Indels: 20
0.70 0.09 0.21
Matches are distributed among these distances:
10 6 0.09
11 11 0.17
12 28 0.42
13 10 0.15
15 3 0.05
16 6 0.09
17 2 0.03
ACGTcount: A:0.52, C:0.00, G:0.17, T:0.31
Consensus pattern (12 bp):
AAATGAAATGTT
Found at i:97439143 original size:18 final size:18
Alignment explanation
Indices: 97439120--97439181 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 18
97439110 ATGAAATGTT
97439120 AAATGAAATGTGAATATG
1 AAATGAAATGTGAATATG
*
97439138 AAATGAAATGT-AATTTG
1 AAATGAAATGTGAATATG
* * *
97439155 TAATG-AATATGAA-ATT
1 AAATGAAATGTGAATATG
97439171 AAATGAAATGT
1 AAATGAAATGT
97439182 TAAATGAATA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
16 9 0.26
17 15 0.43
18 11 0.31
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (18 bp):
AAATGAAATGTGAATATG
Found at i:97439174 original size:28 final size:28
Alignment explanation
Indices: 97439104--97439204 Score: 103
Period size: 28 Copynumber: 3.4 Consensus size: 28
97439094 TGACAAAAAT
*
97439104 AATGAAATGAAATGTTAAATGAAATGTGA
1 AATGAAATGAAATGTTAAATG-AATATGA
*
97439133 ATATGAAATGAAATGTAATTTGTAATGAATATGA
1 A-ATGAAATGAAATG----TT-AAATGAATATGA
* *
97439167 AATTAAATGAAATGTTAAATGAATATAA
1 AATGAAATGAAATGTTAAATGAATATGA
97439195 AATGAAATGA
1 AATGAAATGA
97439205 TGATTATCAA
Statistics
Matches: 60, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
28 19 0.32
29 3 0.05
30 13 0.22
33 12 0.20
34 9 0.15
35 4 0.07
ACGTcount: A:0.52, C:0.00, G:0.17, T:0.31
Consensus pattern (28 bp):
AATGAAATGAAATGTTAAATGAATATGA
Found at i:97439177 original size:16 final size:16
Alignment explanation
Indices: 97439156--97439204 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
97439146 TGTAATTTGT
97439156 AATGAATATGAAATTA
1 AATGAATATGAAATTA
97439172 AATGAA-ATG---TTA
1 AATGAATATGAAATTA
* *
97439184 AATGAATATAAAATGA
1 AATGAATATGAAATTA
97439200 AATGA
1 AATGA
97439205 TGATTATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
15 3 0.11
16 13 0.48
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (16 bp):
AATGAATATGAAATTA
Found at i:97439330 original size:18 final size:19
Alignment explanation
Indices: 97439227--97439344 Score: 89
Period size: 18 Copynumber: 5.9 Consensus size: 19
97439217 GGAATGAAAG
97439227 TTTAAATGAAAATAAATTATAAA
1 TTTAAATGAAAAT-AA--AT-AA
* *
97439250 TTTGAATGAAAACAAAT-A
1 TTTAAATGAAAATAAATAA
* *
97439268 CTGAAATGAAAATAAA-AA
1 TTTAAATGAAAATAAATAA
*
97439286 CTTTGAAATGAGAAATAATTAAA
1 -TTT-AAATGA-AAATAAAT-AA
97439309 TTTAAATGAAAA-AAATAA
1 TTTAAATGAAAATAAATAA
97439327 TTTAAATGAAAAGTAAAT
1 TTTAAATGAAAA-TAAAT
97439345 GTAAATGAAA
Statistics
Matches: 77, Mismatches: 10, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
18 28 0.36
19 4 0.05
20 15 0.19
21 12 0.16
22 5 0.06
23 13 0.17
ACGTcount: A:0.59, C:0.03, G:0.09, T:0.29
Consensus pattern (19 bp):
TTTAAATGAAAATAAATAA
Found at i:97439357 original size:5 final size:5
Alignment explanation
Indices: 97439330--97439426 Score: 59
Period size: 5 Copynumber: 17.4 Consensus size: 5
97439320 AAAATAATTT
* * *
97439330 AAATG AAAAG TAAATG TAAATG AAATG AAATG AAAATAT AAATG AAATA
1 AAATG AAATG -AAATG -AAATG AAATG AAATG -AAAT-G AAATG AAATG
* *
97439379 AACAGG AAGAATG AAATG CAAATG CAAATG AAATAT AAATG AAATG AA
1 AA-ATG -A-AATG AAATG -AAATG -AAATG AAAT-G AAATG AAATG AA
97439427 GAAAAAAAAC
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
5 35 0.47
6 35 0.47
7 3 0.04
8 1 0.01
ACGTcount: A:0.61, C:0.03, G:0.16, T:0.20
Consensus pattern (5 bp):
AAATG
Found at i:97439366 original size:11 final size:10
Alignment explanation
Indices: 97439330--97439426 Score: 59
Period size: 11 Copynumber: 8.7 Consensus size: 10
97439320 AAAATAATTT
*
97439330 AAATGAAAAG
1 AAATGAAATG
97439340 TAAATGTAAATG
1 -AAATG-AAATG
97439352 AAATGAAATG
1 AAATGAAATG
*
97439362 AAAATATAAATG
1 -AAAT-GAAATG
* *
97439374 AAATAAACAGG
1 AAATGAA-ATG
97439385 AAGAATGAAATG
1 -A-AATGAAATG
97439397 CAAATGCAAATG
1 -AAATG-AAATG
*
97439409 AAATATAAATG
1 AAAT-GAAATG
97439420 AAATGAA
1 AAATGAA
97439427 GAAAAAAAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
10 9 0.13
11 37 0.54
12 18 0.26
13 5 0.07
ACGTcount: A:0.61, C:0.03, G:0.16, T:0.20
Consensus pattern (10 bp):
AAATGAAATG
Found at i:97441997 original size:90 final size:89
Alignment explanation
Indices: 97441903--97442245 Score: 228
Period size: 87 Copynumber: 3.9 Consensus size: 89
97441893 TTCGACTAAG
*
97441903 TAATAGTACACGACAAATTAAATTTACAGATATAATAAAATACAAACATTCTAA-AATATTAATA
1 TAATAGT-CACGACAAATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAA-ATTAATA
*
97441967 CAAAAAATATAAAATTCAAACAAAAA
64 CAAAAAATATAAAATTCAAACAAATA
* * * * * **
97441993 TAATACG-CAC--TAAATTAAATTTAAACGCTA-AACAAACTACAAACAGTGGGT-A-AAATTAA
1 TAATA-GTCACGACAAATTAAATTTACA-GATATAAAAAAATACAAACA-T-TCTAAGAAATTAA
** * *
97442052 TACATGAAAT-T-AAATTCGAACTACATA
62 TACAAAAAATATAAAATTCAAAC-AAATA
* * * * *
97442079 TAATA-T--GGATTAAATTGAATTTACAGATACAAAAAAAATACAAATATTCTAAGAAATTAATA
1 TAATAGTCACGA-CAAATTAAATTTACAGATA-TAAAAAAATACAAACATTCTAAGAAATTAATA
* * **
97442141 CAAGAAAATATAAAAATGAAA-ATTTA
64 CAA-AAAATATAAAATTCAAACAAATA
** * * *
97442167 -AATCCTAAACAACTATATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATA
1 TAATAGT-CACGAC-AAATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATA
97442231 CACAAAAATATAAAA
64 CA-AAAAATATAAAA
97442246 ATGATCCCTT
Statistics
Matches: 195, Mismatches: 36, Indels: 44
0.71 0.13 0.16
Matches are distributed among these distances:
85 13 0.07
86 24 0.12
87 65 0.33
88 15 0.08
89 5 0.03
90 54 0.28
91 19 0.10
ACGTcount: A:0.57, C:0.11, G:0.06, T:0.26
Consensus pattern (89 bp):
TAATAGTCACGACAAATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACA
AAAAATATAAAATTCAAACAAATA
Found at i:97442262 original size:90 final size:90
Alignment explanation
Indices: 97442096--97442322 Score: 316
Period size: 90 Copynumber: 2.5 Consensus size: 90
97442086 GATTAAATTG
* *
97442096 AATTTACAGATACAAAAAAAATACAAATATTCTAAGAAATTAATACAAGAAAATATAAAAATGAA
1 AATTTACAGATA-TAAAAAAATACAAAAATTCTAAGAAATTAATACAAGAAAATATAAAAATGAA
*
97442161 AATTTAAATCCTAAACAACTATATTA
65 AACTTAAATCCTAAACAACTATATTA
* *
97442187 AATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACA-AAAATATAAAAATGAT
1 AATTTACAGATATAAAAAAATACAAAAATTCTAAGAAATTAATACA-AGAAAATATAAAAATGAA
** * *
97442251 CCCTTACATCCTAAACAATTATATTA
65 AACTTAAATCCTAAACAACTATATTA
*
97442277 AATTTATAGATATAAAAAAATA-AAAAATTCTAAAGAAA-TAATACAA
1 AATTTACAGATATAAAAAAATACAAAAATTCT-AAGAAATTAATACAA
97442323 TTATTTTGAA
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
88 1 0.01
89 15 0.12
90 95 0.77
91 13 0.10
ACGTcount: A:0.59, C:0.11, G:0.04, T:0.27
Consensus pattern (90 bp):
AATTTACAGATATAAAAAAATACAAAAATTCTAAGAAATTAATACAAGAAAATATAAAAATGAAA
ACTTAAATCCTAAACAACTATATTA
Found at i:97444723 original size:44 final size:44
Alignment explanation
Indices: 97444675--97444759 Score: 161
Period size: 44 Copynumber: 1.9 Consensus size: 44
97444665 AATTATAGGA
97444675 AAATCAAACTCCACGATTACACCTACAGAAACTAACTCATACAT
1 AAATCAAACTCCACGATTACACCTACAGAAACTAACTCATACAT
*
97444719 AAATCAAACTCTACGATTACACCTACAGAAACTAACTCATA
1 AAATCAAACTCCACGATTACACCTACAGAAACTAACTCATA
97444760 AAACAAAACT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.46, C:0.28, G:0.05, T:0.21
Consensus pattern (44 bp):
AAATCAAACTCCACGATTACACCTACAGAAACTAACTCATACAT
Found at i:97444781 original size:17 final size:18
Alignment explanation
Indices: 97444747--97444781 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
97444737 ACACCTACAG
97444747 AAACTAACTCATAAAACA
1 AAACTAACTCATAAAACA
*
97444765 AAACTATCTCA-AAAACA
1 AAACTAACTCATAAAACA
97444782 CAATGAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (18 bp):
AAACTAACTCATAAAACA
Found at i:97448666 original size:20 final size:22
Alignment explanation
Indices: 97448643--97448687 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
97448633 GTGGGATTCA
*
97448643 ACATGCCAATGTGG-AGG-GGC
1 ACATGCCAATATGGAAGGAGGC
97448663 ACATGCCAATATGGAAGGAGGC
1 ACATGCCAATATGGAAGGAGGC
97448685 ACA
1 ACA
97448688 CGACCGTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.59
21 3 0.14
22 6 0.27
ACGTcount: A:0.33, C:0.20, G:0.33, T:0.13
Consensus pattern (22 bp):
ACATGCCAATATGGAAGGAGGC
Done.