Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 29 of 362
Found at i:8433561 original size:122 final size:123
Alignment explanation
Indices: 8433341--8433623 Score: 403
Period size: 122 Copynumber: 2.3 Consensus size: 123
8433331 GGGGTTATAT
*
8433341 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTACTCCGACTTTAGCGGCGTTTTACCAAAA
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTAGCGGCGTTTTACCAAAA
* * * * * * * *
8433406 GCGCCGCTATTGCTTTGGTTTTTAGCGGCGTTTT-GCCAAAAGCGTCGCTATTGCTCC
66 GCACCGCTATTGCTCTGATTTTTAGCGGCGTTTTAACAAAAAACGCCGCTATTACTCC
8433463 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAAA
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGAC-TTTAGCGGCGTTTTACCAAA
* *
8433528 AGCACCGCTATTGCTCT-ATTTTTAGCGGTGTTTTAACAAAAAACGCCGCTATTACTCT
65 AGCACCGCTATTGCTCTGATTTTTAGCGGCGTTTTAACAAAAAACGCCGCTATTACTCC
* * *
8433586 G-TTTTTAGCGGCGTTTT-CCAAAAACGCTGCTATTGCTC
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
8433624 TGTGTTTTAC
Statistics
Matches: 145, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
121 19 0.13
122 73 0.50
123 53 0.37
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (123 bp):
GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTAGCGGCGTTTTACCAAAA
GCACCGCTATTGCTCTGATTTTTAGCGGCGTTTTAACAAAAAACGCCGCTATTACTCC
Found at i:8435702 original size:22 final size:22
Alignment explanation
Indices: 8435674--8435717 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
8435664 TAGAGACTCA
8435674 AAACATATTTTAACTTTTAAAT
1 AAACATATTTTAACTTTTAAAT
8435696 AAACATATTTTAACTTTTAAAT
1 AAACATATTTTAACTTTTAAAT
8435718 TTTTACTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (22 bp):
AAACATATTTTAACTTTTAAAT
Found at i:8439683 original size:7 final size:7
Alignment explanation
Indices: 8439666--8439718 Score: 63
Period size: 7 Copynumber: 7.4 Consensus size: 7
8439656 ATAGATTTTG
8439666 AACCTCTA
1 AACCT-TA
*
8439674 AACCCTA
1 AACCTTA
8439681 AACCTTA
1 AACCTTA
8439688 AA-CTATA
1 AACCT-TA
*
8439695 GACCTTA
1 AACCTTA
8439702 AACCTTA
1 AACCTTA
8439709 AACCTTA
1 AACCTTA
8439716 AAC
1 AAC
8439719 TCGAATTCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
6 2 0.05
7 31 0.79
8 6 0.15
ACGTcount: A:0.43, C:0.30, G:0.02, T:0.25
Consensus pattern (7 bp):
AACCTTA
Found at i:8445542 original size:2 final size:2
Alignment explanation
Indices: 8445535--8445577 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
8445525 AACTTTTTCT
* * * *
8445535 TC TC TC TC TC TC TC TC TC TC TC CC TT TT TC TC TC TC TC CC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8445577 T
1 T
8445578 TTTAAGTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8451607 original size:16 final size:18
Alignment explanation
Indices: 8451588--8451625 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
8451578 TTCTATATGA
8451588 ATTTTACT-TT-TATTTT
1 ATTTTACTATTGTATTTT
8451604 ATTTTACTATTGTATTTT
1 ATTTTACTATTGTATTTT
8451622 ATTT
1 ATTT
8451626 AAATAAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTACTATTGTATTTT
Found at i:8455168 original size:11 final size:12
Alignment explanation
Indices: 8455147--8455172 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8455137 AATTTCTTGC
8455147 TTTCTTTTTTTT
1 TTTCTTTTTTTT
8455159 TTTCTTTTTTTT
1 TTTCTTTTTTTT
8455171 TT
1 TT
8455173 AACGAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTCTTTTTTTT
Found at i:8458416 original size:19 final size:19
Alignment explanation
Indices: 8458392--8458431 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8458382 ATTTCTTAAT
*
8458392 TTAATAACAATAATAATAA
1 TTAATAACAACAATAATAA
*
8458411 TTAATAATAACAATAATAA
1 TTAATAACAACAATAATAA
8458430 TT
1 TT
8458432 TATATATCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
TTAATAACAACAATAATAA
Found at i:8464381 original size:20 final size:20
Alignment explanation
Indices: 8464343--8464390 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
8464333 TAAATTCTAA
* **
8464343 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
8464363 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
8464383 AAA-ATAAA
1 AAAGATAAA
8464391 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:8464415 original size:27 final size:26
Alignment explanation
Indices: 8464385--8464447 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
8464375 AGATAATTAA
8464385 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
8464412 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
8464439 AATATAAAT
1 AATA-AAAT
8464448 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:8464434 original size:15 final size:15
Alignment explanation
Indices: 8464414--8464443 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8464404 ATAATCCTAA
*
8464414 TAATTATCTTAATAT
1 TAATTATCCTAATAT
8464429 TAATTATCCTAATAT
1 TAATTATCCTAATAT
8464444 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:8465620 original size:45 final size:43
Alignment explanation
Indices: 8465522--8465665 Score: 189
Period size: 43 Copynumber: 3.3 Consensus size: 43
8465512 TTATTTAAAA
*
8465522 AAACGCCGCTAAAGACCATGACTTTTAACGGCGCTTTTTTTAC
1 AAACGCCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTTAC
**
8465565 AAACGCCGCTAAAGACCATGACCTTTAACAGTGCTTTTTTTTTAC
1 AAACGCCGCTAAAGACCATGACCTTTAAC-G-GCGCTTTTTTTAC
* * ****
8465610 AAACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTCCCGC
1 AAACGCCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTTAC
8465653 AAACGCCGCTAAA
1 AAACGCCGCTAAA
8465666 AATCATGAAT
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
43 48 0.54
44 2 0.02
45 39 0.44
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTTAC
Found at i:8468979 original size:9 final size:9
Alignment explanation
Indices: 8468961--8469016 Score: 53
Period size: 8 Copynumber: 6.2 Consensus size: 9
8468951 TATTGTTTAA
*
8468961 TTTAAATTT
1 TTTAATTTT
8468970 TTTAA-TTT
1 TTTAATTTT
8468978 TTTAA-TTT
1 TTTAATTTT
8468986 TTTATATTTT
1 TTTA-ATTTT
*
8468996 TTTCTATTTT
1 TTT-AATTTT
*
8469006 TTTTATTTT
1 TTTAATTTT
8469015 TT
1 TT
8469017 CTTTCAAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
8 15 0.35
9 14 0.33
10 14 0.33
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTAATTTT
Found at i:8468986 original size:7 final size:8
Alignment explanation
Indices: 8468965--8468997 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
8468955 GTTTAATTTA
8468965 AATTTTTT
1 AATTTTTT
8468973 AATTTTTT
1 AATTTTTT
8468981 AATTTTTT
1 AATTTTTT
8468989 ATATTTTTT
1 A-ATTTTTT
8468998 TCTATTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.71
9 7 0.29
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
AATTTTTT
Found at i:8468988 original size:10 final size:9
Alignment explanation
Indices: 8468967--8469016 Score: 64
Period size: 9 Copynumber: 5.4 Consensus size: 9
8468957 TTAATTTAAA
*
8468967 TTTTTTAAT
1 TTTTTTATT
*
8468976 TTTTTAATT
1 TTTTTTATT
*
8468985 TTTTATATT
1 TTTTTTATT
8468994 TTTTTCTATT
1 TTTTT-TATT
8469004 TTTTTTATT
1 TTTTTTATT
8469013 TTTT
1 TTTT
8469017 CTTTCAAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
9 26 0.74
10 9 0.26
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTATT
Found at i:8469028 original size:21 final size:21
Alignment explanation
Indices: 8468963--8469030 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 21
8468953 TTGTTTAATT
8468963 TAAATTTTTTA-A--TTTTT-
1 TAAATTTTTTATATTTTTTTC
8468980 T-AATTTTTTATATTTTTTTC
1 TAAATTTTTTATATTTTTTTC
** *
8469000 TATTTTTTTTATTTTTTCTTTC
1 TAAATTTTTTATATTTT-TTTC
8469022 -AAATTTTTT
1 TAAATTTTTT
8469031 GTGCTGAGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
16 9 0.22
17 2 0.05
19 5 0.12
20 1 0.03
21 19 0.47
22 4 0.10
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (21 bp):
TAAATTTTTTATATTTTTTTC
Found at i:8469114 original size:7 final size:7
Alignment explanation
Indices: 8469102--8469129 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
8469092 ATATGGACTA
8469102 AAATATT
1 AAATATT
8469109 AAATATT
1 AAATATT
8469116 AAATATT
1 AAATATT
8469123 AAATATT
1 AAATATT
8469130 TAAGTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAATATT
Found at i:8469159 original size:6 final size:7
Alignment explanation
Indices: 8469134--8469158 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8469124 AATATTTAAG
8469134 TTTTTAT
1 TTTTTAT
8469141 TTTTTAT
1 TTTTTAT
8469148 TTTTTAT
1 TTTTTAT
8469155 TTTT
1 TTTT
8469159 AAATTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:8470327 original size:41 final size:40
Alignment explanation
Indices: 8470282--8470376 Score: 136
Period size: 41 Copynumber: 2.4 Consensus size: 40
8470272 TTATATAACT
* *
8470282 TTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGAGCCGCTAATGCTCT-GTC
** *
8470323 TTTAGCGGCGTTTTACCAAAAGAGTGGCTAATGCTCTGTT
1 TTTAGCGGCGTTTTACCAAAAGAGCCGCTAATGCTCTGTC
8470363 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
8470377 TGTTAAAACG
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 16 0.33
41 33 0.67
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (40 bp):
TTTAGCGGCGTTTTACCAAAAGAGCCGCTAATGCTCTGTC
Found at i:8475121 original size:13 final size:13
Alignment explanation
Indices: 8475103--8475127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8475093 TATTACTTAA
8475103 AATAAAAAATATG
1 AATAAAAAATATG
8475116 AATAAAAAATAT
1 AATAAAAAATAT
8475128 TTCTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
AATAAAAAATATG
Found at i:8475955 original size:18 final size:18
Alignment explanation
Indices: 8475922--8475984 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
8475912 ATGTACTACT
8475922 ATTATA-TATA-ATTATA
1 ATTATATTATAGATTATA
8475938 ATTATATTATAGATTATA
1 ATTATATTATAGATTATA
* * *
8475956 ATAAAAGTATAGTATTAT-
1 ATTATATTATAG-ATTATA
*
8475974 ATGATATTATA
1 ATTATATTATA
8475985 ATTTTTAATC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
16 6 0.16
17 4 0.11
18 23 0.61
19 5 0.13
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (18 bp):
ATTATATTATAGATTATA
Found at i:8476198 original size:7 final size:7
Alignment explanation
Indices: 8476167--8476208 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
8476157 AAGGTACTAC
*
8476167 TATTTTA
1 TATTATA
*
8476174 TATAATA
1 TATTATA
8476181 -ATTATTA
1 TATTA-TA
8476188 TATTATA
1 TATTATA
8476195 TATTATA
1 TATTATA
8476202 TATTATA
1 TATTATA
8476209 ATAAAAGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
6 3 0.10
7 23 0.77
8 4 0.13
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TATTATA
Found at i:8478959 original size:41 final size:43
Alignment explanation
Indices: 8478913--8478997 Score: 113
Period size: 41 Copynumber: 2.0 Consensus size: 43
8478903 AGGGTAAATC
* * *
8478913 CAACAACTCAAGTTTATCTTCT-C-CTTTTTAAATT-TATTTTT
1 CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCT-TTTTT
8478954 CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCTTTTTT
8478997 C
1 C
8478998 TAGGATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 19 0.50
42 1 0.03
43 17 0.45
44 1 0.03
ACGTcount: A:0.27, C:0.24, G:0.02, T:0.47
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCTTTTTT
Found at i:8479286 original size:21 final size:21
Alignment explanation
Indices: 8479262--8479305 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8479252 TGCAATGATA
*
8479262 AAAATACTAGTGAAATGT-CCT
1 AAAATACTACT-AAATGTACCT
*
8479283 AAAATGCTACTAAATGTACCT
1 AAAATACTACTAAATGTACCT
8479304 AA
1 AA
8479306 GTACAAGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.27
Consensus pattern (21 bp):
AAAATACTACTAAATGTACCT
Found at i:8483307 original size:111 final size:109
Alignment explanation
Indices: 8483150--8483358 Score: 260
Period size: 111 Copynumber: 1.9 Consensus size: 109
8483140 CAAAGACAAT
* * * * *
8483150 AAAAAAAATTGGTGTTGGCTAGTAGATGACCAGCACCAGGTACAATTTTCGGTTCCCAAGGCACT
1 AAAAAAAATTGGTGCTGGCCAGTAGATGACCAGCACCAAGTACAATTATCGGCTCCCAAGGCA-T
* * * *
8483215 TTTTTTT-TCTTTGGGACACTGATGGCCGTCACCAGTGTATTTTAA
65 TTTTTTTAT-TTTGGAACACAGATGACCGGCACCAGTGTATTTTAA
* * *
8483260 AAAAAAAATTGGGTGCTGGCCATGTA-ATGGCCGGCACCAAGTACAATTATCGGCTCCCAATGCA
1 AAAAAAAATT-GGTGCTGGCCA-GTAGATGACCAGCACCAAGTACAATTATCGGCTCCCAAGGCA
8483324 TTTTTTTTATTTTGGAACACAGATGACCGGCACCA
64 TTTTTTTTATTTTGGAACACAGATGACCGGCACCA
8483359 AACCCTATAT
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
110 39 0.46
111 42 0.50
112 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (109 bp):
AAAAAAAATTGGTGCTGGCCAGTAGATGACCAGCACCAAGTACAATTATCGGCTCCCAAGGCATT
TTTTTTATTTTGGAACACAGATGACCGGCACCAGTGTATTTTAA
Found at i:8483977 original size:90 final size:88
Alignment explanation
Indices: 8483775--8484095 Score: 333
Period size: 90 Copynumber: 3.6 Consensus size: 88
8483765 TCAAAATAAT
* * * *
8483775 TGTATT-ATTTCTTTAGAATGTTTGTATTTTTTTATATCTGTAAATTTAATGTAGTTGT-TTAGG
1 TGTATTAATTT-TTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTCGTATTA-T
* *
8483838 ATTTAAAGTTTCATTTTTATATTTTCG
64 ATTT--AGTTTGAATTTTATATTTTCG
*
8483865 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTCCGTATTATA
1 TGTATTAATTTTTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGT-CGTATTATA
* * *
8483930 TGTAGTTTGAATTTAAAATTTTCG
65 TTTAGTTTGAATTTTATATTTTCG
** * * * ** * * *
8483954 TGTATTAATTTTTTCCATCTGTTTGTAGTTTGTTGGGTGTTTAAATTTAATTTAGTGCATATTAT
1 TGTATTAATTTTTTAGA-ATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGT-CGTATTAT
* *
8484019 -TTTTGTTTGAATTTTATATTTTTG
64 ATTTAGTTTGAATTTTATATTTTCG
* * *
8484043 TGTATTAATATTGTAGAATGTTTGTATTTTATTGTATCTGTAAATTTAATTTA
1 TGTATTAATTTTTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTA
8484096 TTGTGTACTT
Statistics
Matches: 189, Mismatches: 38, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
88 29 0.15
89 63 0.33
90 85 0.45
91 9 0.05
92 3 0.02
ACGTcount: A:0.25, C:0.04, G:0.14, T:0.57
Consensus pattern (88 bp):
TGTATTAATTTTTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTCGTATTATAT
TTAGTTTGAATTTTATATTTTCG
Found at i:8484040 original size:89 final size:89
Alignment explanation
Indices: 8483852--8484095 Score: 258
Period size: 89 Copynumber: 2.7 Consensus size: 89
8483842 AAAGTTTCAT
* * * *
8483852 TTTTATATTTTCGTGTATTAATTTCTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTT
1 TTTTATATTTTCGTGTATTAATTTCTTACAATGTTTGTAGTTTGTTGGATCTGTAAATTTAATTT
*
8483917 AGTCCGTATTATATGTAGTTTGAA
66 AGTCCATATTATATGTAGTTTGAA
* * * * * * * *
8483941 TTTAAAATTTTCGTGTATTAATTTTTTCCATCTGTTTGTAGTTTGTTGGGTGTTTAAATTTAATT
1 TTTTATATTTTCGTGTATTAATTTCTTACA-ATGTTTGTAGTTTGTTGGATCTGTAAATTTAATT
* * *
8484006 TAGTGCATATTAT-TTTTGTTTGAA
65 TAGTCCATATTATATGTAGTTTGAA
* * * * * *
8484030 TTTTATATTTTTGTGTATTAATATT-GTAGAATGTTTGTATTTTATTGTATCTGTAAATTTAATT
1 TTTTATATTTTCGTGTATTAAT-TTCTTACAATGTTTGTAGTTTGTTGGATCTGTAAATTTAATT
8484094 TA
65 TA
8484096 TTGTGTACTT
Statistics
Matches: 124, Mismatches: 29, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
88 29 0.23
89 55 0.44
90 40 0.32
ACGTcount: A:0.25, C:0.05, G:0.14, T:0.57
Consensus pattern (89 bp):
TTTTATATTTTCGTGTATTAATTTCTTACAATGTTTGTAGTTTGTTGGATCTGTAAATTTAATTT
AGTCCATATTATATGTAGTTTGAA
Found at i:8486443 original size:68 final size:69
Alignment explanation
Indices: 8486370--8486521 Score: 179
Period size: 67 Copynumber: 2.2 Consensus size: 69
8486360 CATCATGTGT
* * * * *
8486370 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTTGCATGGGT-GATAC-TATG-TGTACACC
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAGATGAAGGACACC
8486432 ATGTAG
64 ATGTAG
* * *
8486438 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCGCATGCGTGGTTCCAGATGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGGATACAGATGAAGGACACCAT
8486501 GTAG
66 GTAG
8486505 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
8486522 TAAACTGGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
64 19 0.27
65 6 0.08
66 4 0.06
67 27 0.38
68 15 0.21
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (69 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGGATACAGATGAAGGACACCAT
GTAG
Found at i:8488492 original size:23 final size:23
Alignment explanation
Indices: 8488466--8488552 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
8488456 GCTTTATTGA
* *
8488466 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
8488489 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
* *
8488510 TCAGACACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
8488532 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
8488553 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
21 33 0.62
22 2 0.04
23 18 0.34
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:8490605 original size:27 final size:27
Alignment explanation
Indices: 8490563--8490695 Score: 191
Period size: 27 Copynumber: 5.0 Consensus size: 27
8490553 GTCACAAGAT
8490563 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
8490589 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
8490616 TCAGATA-ATCGTGGCATAGCCACCAGA
1 ACAGATATAT-GTGGCAGAGCCACCAGA
8490643 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
8490670 TCAGATA-ATTGTGGCATAGCCACCAG
1 ACAGATATA-TGTGGCAGAGCCACCAG
8490696 GACGCTTCTT
Statistics
Matches: 97, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
26 11 0.11
27 84 0.87
28 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:8490639 original size:54 final size:54
Alignment explanation
Indices: 8490559--8490695 Score: 240
Period size: 54 Copynumber: 2.5 Consensus size: 54
8490549 CGAAGTCACA
*
8490559 AGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
*
8490613 AGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
8490667 AGATCAGATAATTGTGGCATAGCCACCAG
1 AGATCAGATAATTGTGGCATAGCCACCAG
8490696 GACGCTTCTT
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
Found at i:8490843 original size:26 final size:28
Alignment explanation
Indices: 8490799--8490863 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 28
8490789 CAAAAGTAAC
**
8490799 CCTAGGGGTATAATGGTAA-TTT-TGTA
1 CCTAGGGGTATAACAGTAATTTTCTGTA
*
8490825 CCTAGGGGTTTAACAGTAATTTTCTGTA
1 CCTAGGGGTATAACAGTAATTTTCTGTA
*
8490853 CATAGGGGTAT
1 CCTAGGGGTAT
8490864 TCAAGTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 16 0.50
27 3 0.09
28 13 0.41
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (28 bp):
CCTAGGGGTATAACAGTAATTTTCTGTA
Found at i:8492290 original size:26 final size:26
Alignment explanation
Indices: 8492257--8492364 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
8492247 TGAAATTCCC
8492257 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8492283 ATGATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8492309 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8492335 ATCATGGAACATTTACCTAACCCGTT
1 ATCATGGAACATTTACCTAACCCATT
8492361 ATCA
1 ATCA
8492365 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8498667 original size:27 final size:27
Alignment explanation
Indices: 8498625--8498703 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
8498615 GTCACAAGAT
8498625 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
8498651 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
8498678 TCAGATA-ATCGTGGCATAGCCACCAG
1 ACAGATATAT-GTGGCAGAGCCACCAG
8498704 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.16
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:8498871 original size:28 final size:26
Alignment explanation
Indices: 8498809--8498871 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
8498799 AAAGTAACCC
** *
8498809 TAGGGGTATAATGGTAATTTTCAACT
1 TAGGGGTATAACAGTAATTTTCAACA
*
8498835 TAGGGGTATAACAGTAATTTTCCGTACA
1 TAGGGGTATAACAGTAATTTT-C-AACA
8498863 TAGGGGTAT
1 TAGGGGTAT
8498872 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 19 0.61
27 1 0.03
28 11 0.35
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCAACA
Found at i:8500085 original size:12 final size:12
Alignment explanation
Indices: 8500068--8500092 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8500058 AAATAGAAGC
8500068 AAGGTACCAAGA
1 AAGGTACCAAGA
8500080 AAGGTACCAAGA
1 AAGGTACCAAGA
8500092 A
1 A
8500093 CTTACCTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.24, T:0.08
Consensus pattern (12 bp):
AAGGTACCAAGA
Found at i:8500307 original size:26 final size:26
Alignment explanation
Indices: 8500277--8500332 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
8500267 TGAAATTCCC
8500277 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8500303 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8500329 ATCA
1 ATCA
8500333 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8503981 original size:21 final size:21
Alignment explanation
Indices: 8503952--8504122 Score: 71
Period size: 25 Copynumber: 7.4 Consensus size: 21
8503942 TTCTCATTTC
8503952 ATTTAAATTATCTTTCTTCCT
1 ATTTAAATTATCTTTCTTCCT
* *
8503973 ATTTTAATTTAT-TTTTTTCTCATTT
1 A-TTTAAATTATCTTTCTTC-C---T
8503998 CATTTAAATTATCTTTCTTCCT
1 -ATTTAAATTATCTTTCTTCCT
* *
8504020 ATTTTAATTTAT-TTTTTTCTCATTT
1 A-TTTAAATTATCTTTCTTC-C---T
*
8504045 CATTTAAATTAT-TTTTTTCC-
1 -ATTTAAATTATCTTTCTTCCT
* *
8504065 ATTTAAATTTAATTTTTTTTCTCATTT
1 ATTTAAA-TT-ATCTTTCTTC-C---T
*
8504092 CATTTAAATTATCTTTCTTCCC
1 -ATTTAAATTATCTTTCTTCCT
8504114 ATTTAAATT
1 ATTTAAATT
8504123 TAATTTTTTT
Statistics
Matches: 118, Mismatches: 10, Indels: 44
0.69 0.06 0.26
Matches are distributed among these distances:
19 7 0.06
20 2 0.02
21 25 0.21
22 28 0.24
23 1 0.01
24 1 0.01
25 29 0.25
26 16 0.14
27 2 0.02
28 7 0.06
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTTAAATTATCTTTCTTCCT
Found at i:8503984 original size:22 final size:22
Alignment explanation
Indices: 8503953--8504031 Score: 79
Period size: 22 Copynumber: 3.5 Consensus size: 22
8503943 TCTCATTTCA
8503953 TTTAAATTATCTTTCTTCCTAT
1 TTTAAATTATCTTTCTTCCTAT
* * *
8503975 TTTAATTTAT-TTTTTTCTCATTT
1 TTTAAATTATCTTTCTTC-C-TAT
8503998 CATTTAAATTATCTTTCTTCCTAT
1 --TTTAAATTATCTTTCTTCCTAT
*
8504022 TTTAATTTAT
1 TTTAAATTAT
8504032 TTTTTTCTCA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
21 6 0.13
22 19 0.42
23 2 0.04
24 2 0.04
25 10 0.22
26 6 0.13
ACGTcount: A:0.23, C:0.14, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTAAATTATCTTTCTTCCTAT
Found at i:8504082 original size:20 final size:19
Alignment explanation
Indices: 8504045--8504082 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8504035 TTTCTCATTT
*
8504045 CATTTAAATTATTTTTTTC
1 CATTTAAATTAATTTTTTC
8504064 CATTTAAATTTAATTTTTT
1 CATTTAAA-TTAATTTTTT
8504083 TTCTCATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (19 bp):
CATTTAAATTAATTTTTTC
Found at i:8504144 original size:27 final size:27
Alignment explanation
Indices: 8504064--8504284 Score: 166
Period size: 27 Copynumber: 8.3 Consensus size: 27
8504054 TATTTTTTTC
8504064 CATTTAAATTTAATTTTTTTTCTCATTT
1 CATTTAAATTTAA-TTTTTTTCTCATTT
*
8504092 CATTTAAA-TT-ATCTTTCTTC-C----
1 CATTTAAATTTAAT-TTTTTTCTCATTT
8504113 CATTTAAATTTAATTTTTTTCTCATTT
1 CATTTAAATTTAATTTTTTTCTCATTT
* *
8504140 TATTTAAA-TTATCTTTTTTTC-CATTT
1 CATTTAAATTTA-ATTTTTTTCTCATTT
8504166 CGATTTAAATATTTCAATTTAAATTTTTTCTCATTT
1 C-ATTT-AA-ATTT-AA--T---TTTTTTCTCATTT
* *
8504202 CATTTAAA-TT-A--TCTTTCT--TTC
1 CATTTAAATTTAATTTTTTTCTCATTT
8504223 CATTTAAATTTAATTTTTTTCTCATTT
1 CATTTAAATTTAATTTTTTTCTCATTT
* *
8504250 CATTTAAATTTATTTTTTTTCTCTTTT
1 CATTTAAATTTAATTTTTTTCTCATTT
8504277 CATTTAAA
1 CATTTAAA
8504285 GTATCTTTCT
Statistics
Matches: 155, Mismatches: 12, Indels: 53
0.70 0.05 0.24
Matches are distributed among these distances:
21 18 0.12
22 10 0.06
23 10 0.06
25 8 0.05
26 15 0.10
27 56 0.36
28 10 0.06
29 1 0.01
30 3 0.02
31 1 0.01
32 3 0.02
33 1 0.01
34 2 0.01
35 11 0.07
36 6 0.04
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (27 bp):
CATTTAAATTTAATTTTTTTCTCATTT
Found at i:8504209 original size:110 final size:111
Alignment explanation
Indices: 8504065--8504284 Score: 356
Period size: 110 Copynumber: 2.0 Consensus size: 111
8504055 ATTTTTTTCC
*
8504065 ATTTAAATTTAATTTTTTTTCTCATTTCATTTAAATTATCTTTCTTCCCATTTAAATTTAATTTT
1 ATTTAAATTTAATATTTTTTCTCATTTCATTTAAATTATCTTTCTTCCCATTTAAATTTAATTTT
*
8504130 TTTCTCATTTTATTTAAA-TTATCTTTTTTTC-CATTTCGATTTAAAT
66 TTTCTCATTTCATTTAAATTTAT-TTTTTTTCTCATTTC-ATTTAAAT
* *
8504176 ATTTCAATTTAA-ATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTTT
1 ATTTAAATTTAATATTTTTTCTCATTTCATTTAAATTATCTTTCTTCCCATTTAAATTTAATTTT
*
8504240 TTTCTCATTTCATTTAAATTTATTTTTTTTCTCTTTTCATTTAAA
66 TTTCTCATTTCATTTAAATTTATTTTTTTTCTCATTTCATTTAAA
8504285 GTATCTTTCT
Statistics
Matches: 102, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
110 82 0.80
111 20 0.20
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (111 bp):
ATTTAAATTTAATATTTTTTCTCATTTCATTTAAATTATCTTTCTTCCCATTTAAATTTAATTTT
TTTCTCATTTCATTTAAATTTATTTTTTTTCTCATTTCATTTAAAT
Found at i:8504234 original size:62 final size:62
Alignment explanation
Indices: 8504114--8504235 Score: 190
Period size: 62 Copynumber: 2.0 Consensus size: 62
8504104 CTTTCTTCCC
* * * **
8504114 ATTTAAATTTAATTTTTTTCTCATTTTATTTAAATTATCTTTTTTTCCATTTCGATTTAAAT
1 ATTTAAATTTAAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAAAT
*
8504176 ATTTCAATTTAAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAA
1 ATTTAAATTTAAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAA
8504236 TTTTTTTCTC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.29, C:0.11, G:0.01, T:0.59
Consensus pattern (62 bp):
ATTTAAATTTAAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAAAT
Found at i:8504252 original size:48 final size:48
Alignment explanation
Indices: 8503940--8504315 Score: 360
Period size: 47 Copynumber: 8.0 Consensus size: 48
8503930 TTCAATTTTC
*
8503940 TTTTCTCATTTCATTTAAATTATCTTTC-TTCCTATTTTAATTT-ATTT
1 TTTTCTCATTTCATTTAAATTATCTTTCTTTCC-ATTTAAATTTAATTT
*
8503987 TTTTCTCATTTCATTTAAATTATCTTTC-TTCCTATTTTAATTT-ATTT
1 TTTTCTCATTTCATTTAAATTATCTTTCTTTCC-ATTTAAATTTAATTT
8504034 TTTTCTCATTTCATTTAAATTAT-TTT-TTTCCATTTAAATTTAATTTT
1 TTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAA-TTT
*
8504081 TTTTCTCATTTCATTTAAATTATCTTTCTTCCCATTTAAATTTAATTT
1 TTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTT
* * ** *
8504129 TTTTCTCATTTTATTTAAATTATCTTTTTTTCCATTTCGATTTAA--A
1 TTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTT
* *
8504175 TATT-TCA----ATTTAAATT-T-TTTCTCATTTCATTTAAA-TT-ATCTT
1 TTTTCTCATTTCATTTAAATTATCTTTCT--TTCCATTTAAATTTAAT-TT
* * * *
8504217 TCTTTC-CATTTAAATTT-AATT-TTTTTCTCATTTCATTTAAATTTATTTT
1 T-TTTCTCATTT-CATTTAAATTATCTTTCT--TTCCATTTAAATTTAATTT
* * * *
8504266 TTTTCTCTTTTCATTTAAAGTATCTTTCTTTACATTTAAATTTACTTT
1 TTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTT
8504314 TT
1 TT
8504316 CTACATATAA
Statistics
Matches: 284, Mismatches: 22, Indels: 45
0.81 0.06 0.13
Matches are distributed among these distances:
39 5 0.02
40 3 0.01
41 17 0.06
42 1 0.00
43 4 0.01
45 12 0.04
46 11 0.04
47 101 0.36
48 95 0.33
49 28 0.10
50 7 0.02
ACGTcount: A:0.24, C:0.14, G:0.01, T:0.62
Consensus pattern (48 bp):
TTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTT
Found at i:8504313 original size:21 final size:22
Alignment explanation
Indices: 8504271--8504329 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
8504261 ATTTTTTTTC
* *
8504271 TCTTTTCATTTAAA-GTATCTT
1 TCTTTACATTTAAATTTATCTT
8504292 TCTTTACATTTAAATTTA-CTT
1 TCTTTACATTTAAATTTATCTT
*
8504313 T-TTCTACATATAAATTT
1 TCTT-TACATTTAAATTT
8504330 TTCTCTCATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 2 0.06
21 29 0.88
22 2 0.06
ACGTcount: A:0.29, C:0.14, G:0.02, T:0.56
Consensus pattern (22 bp):
TCTTTACATTTAAATTTATCTT
Found at i:8505832 original size:12 final size:12
Alignment explanation
Indices: 8505815--8505848 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
8505805 CCGGCCCGCC
8505815 TATATTAATTTT
1 TATATTAATTTT
8505827 TATATT-ATTTT
1 TATATTAATTTT
8505838 TATA-TAATTTT
1 TATATTAATTTT
8505849 AAAATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 14 0.67
12 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:8506016 original size:30 final size:30
Alignment explanation
Indices: 8505973--8506030 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
8505963 TTTAACAAGA
8505973 AAATGCCTCTAAAATAATAACAA-AATTAGC
1 AAATGCCTCTAAAATAATAA-AAGAATTAGC
* *
8506003 AAATGTCTTTAAAATAATAAAAGAATTA
1 AAATGCCTCTAAAATAATAAAAGAATTA
8506031 ACAATAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.28
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAGAATTAGC
Found at i:8506134 original size:25 final size:26
Alignment explanation
Indices: 8506106--8506158 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
8506096 AATAGGGAGA
8506106 AAATAATATTTT-AAAAAATTCATTT
1 AAATAATATTTTAAAAAAATTCATTT
8506131 AAATAATATTTTAAAAAAAATTCATTT
1 AAATAATATTTT-AAAAAAATTCATTT
8506158 A
1 A
8506159 GTGAATTCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 12 0.46
27 14 0.54
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (26 bp):
AAATAATATTTTAAAAAAATTCATTT
Found at i:8506577 original size:8 final size:8
Alignment explanation
Indices: 8506564--8506607 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
8506554 ACTTAAGTGT
8506564 ATAATATA
1 ATAATATA
8506572 ATAATATA
1 ATAATATA
*
8506580 ATAATTTA
1 ATAATATA
*
8506588 ATAATTTA
1 ATAATATA
8506596 ATAATATA
1 ATAATATA
8506604 ATAA
1 ATAA
8506608 AACATAAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATAATATA
Found at i:8511595 original size:46 final size:45
Alignment explanation
Indices: 8511545--8511717 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
8511535 TGGTTGAGCA
* *
8511545 TCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AAACG
* * *
8511591 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AA--A--CG
* *
8511638 TTCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGAGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA-AACG
* *
8511684 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
8511718 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.56
47 28 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAACG
Found at i:8511706 original size:93 final size:93
Alignment explanation
Indices: 8511542--8511712 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
8511532 GGATGGTTGA
* *
8511542 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
8511607 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
8511635 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATG-AGAACGCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCA-AACGCCCGAACTCGTTGAG
8511699 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
8511713 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:8511979 original size:19 final size:20
Alignment explanation
Indices: 8511942--8511979 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
8511932 ATAAGGTGGT
8511942 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
8511962 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
8511980 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:8518888 original size:24 final size:24
Alignment explanation
Indices: 8518861--8518924 Score: 119
Period size: 24 Copynumber: 2.7 Consensus size: 24
8518851 CGAAAGAGAG
8518861 TCCCGTTATTAGCTCTCATGAGCT
1 TCCCGTTATTAGCTCTCATGAGCT
8518885 TCCCGTTATTAGCTCTCATGAGCT
1 TCCCGTTATTAGCTCTCATGAGCT
*
8518909 TCCCGTTAATAGCTCT
1 TCCCGTTATTAGCTCT
8518925 TCGGAACATC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.38
Consensus pattern (24 bp):
TCCCGTTATTAGCTCTCATGAGCT
Found at i:8519039 original size:27 final size:26
Alignment explanation
Indices: 8519009--8519073 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
8518999 TGGCTTTTCG
*
8519009 GAGCTTCCCGATTAA-AGGCTCTTTCA
1 GAGCTTCCCGATTAATAGGCTC-TCCA
** *
8519035 TGAGCTTCCTAATTAATTGGCTCTCCA
1 -GAGCTTCCCGATTAATAGGCTCTCCA
8519062 GAGCTTCCCGAT
1 GAGCTTCCCGAT
8519074 ATTAGCTCGC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
26 10 0.32
27 16 0.52
28 5 0.16
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (26 bp):
GAGCTTCCCGATTAATAGGCTCTCCA
Found at i:8519116 original size:24 final size:24
Alignment explanation
Indices: 8519062--8519118 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
8519052 TGGCTCTCCA
* *
8519062 GAGCTTCCCGATATTAGCTCGCTT
1 GAGCTTCCCAATATTAGCTCGCAT
* *
8519086 GAACTTCCCAATTATT-GCTCGGAT
1 GAGCTTCCCAA-TATTAGCTCGCAT
8519110 GAGCTTCCC
1 GAGCTTCCC
8519119 GTTACATGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.32
Consensus pattern (24 bp):
GAGCTTCCCAATATTAGCTCGCAT
Found at i:8521202 original size:5 final size:5
Alignment explanation
Indices: 8521173--8521220 Score: 60
Period size: 5 Copynumber: 9.0 Consensus size: 5
8521163 TAGGAAGATA
*
8521173 TTATT TTGTT TTATTAT TTATTT TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTA-T-T TTA-TT TTATT TTATT TTATT TTATT TTATT
8521221 AATTTAGGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
5 28 0.72
6 5 0.13
7 6 0.15
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:8521206 original size:15 final size:15
Alignment explanation
Indices: 8521186--8521225 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
8521176 TTTTGTTTTA
8521186 TTATTTATTTTTATT
1 TTATTTATTTTTATT
8521201 TTATTT-TATTTTATT
1 TTATTTAT-TTTTATT
*
8521216 TTATTAATTT
1 TTATTTATTT
8521226 AGGTTAGGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 20 0.91
16 1 0.05
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTATTTATTTTTATT
Found at i:8529122 original size:41 final size:41
Alignment explanation
Indices: 8529051--8529145 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
8529041 AAATGGGTCT
* * *
8529051 ACTCACACAAGCTGACGGTCAGAATGTAGCTATACGATGCC
1 ACTCACACAAGCTGACAGTCAGAATATAGCTACACGATGCC
* * * *
8529092 GCTCACACAAGTTGACAGTCGGAATATAGCTACATGATGCC
1 ACTCACACAAGCTGACAGTCAGAATATAGCTACACGATGCC
*
8529133 ACTTACACAAGCT
1 ACTCACACAAGCT
8529146 AACTAGTATC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (41 bp):
ACTCACACAAGCTGACAGTCAGAATATAGCTACACGATGCC
Found at i:8530079 original size:39 final size:39
Alignment explanation
Indices: 8530035--8530111 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
8530025 GTTGTATACC
8530035 ATGTTCATAAAAGATGTATTGTTAATATATATACTAACG
1 ATGTTCATAAAAGATGTATTGTTAATATATATACTAACG
8530074 ATGTTCATAAAAGATGTATTGTTAATATATATACTAAC
1 ATGTTCATAAAAGATGTATTGTTAATATATATACTAAC
8530112 AATATGAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.39
Consensus pattern (39 bp):
ATGTTCATAAAAGATGTATTGTTAATATATATACTAACG
Found at i:8533613 original size:18 final size:19
Alignment explanation
Indices: 8533590--8533632 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
8533580 ATATTTATTT
*
8533590 ATATATTATAAAT-TTTAA
1 ATATATTATAAATAATTAA
*
8533608 ATATATTTTAAATAATTAA
1 ATATATTATAAATAATTAA
8533627 ATATAT
1 ATATAT
8533633 ATTAAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATATTATAAATAATTAA
Found at i:8533628 original size:19 final size:18
Alignment explanation
Indices: 8533590--8533639 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
8533580 ATATTTATTT
* *
8533590 ATATATTATAAATTTTAA
1 ATATATTTTAAATATTAA
8533608 ATATATTTTAAATAATTAA
1 ATATATTTTAAAT-ATTAA
*
8533627 ATATATATTAAAT
1 ATATATTTTAAAT
8533640 TAAGTATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 12 0.43
19 16 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATATTTTAAATATTAA
Found at i:8537470 original size:45 final size:45
Alignment explanation
Indices: 8537406--8537496 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
8537396 ATTCAAATAT
* * *
8537406 TCATTTTATGACTAAGCTAATAATTAGGTTAACGAGAAGATTTGA
1 TCATTTTATGACTAAGCTAATAATTAGATTAACAAAAAGATTTGA
*
8537451 TCATTTTATGACTAGGCTAATAATTAGATTAACAAAAAGATTTGA
1 TCATTTTATGACTAAGCTAATAATTAGATTAACAAAAAGATTTGA
8537496 T
1 T
8537497 TGATATGATA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (45 bp):
TCATTTTATGACTAAGCTAATAATTAGATTAACAAAAAGATTTGA
Found at i:8542853 original size:67 final size:68
Alignment explanation
Indices: 8542725--8542854 Score: 183
Period size: 68 Copynumber: 1.9 Consensus size: 68
8542715 TAAAGTATTA
* * * *
8542725 AAAATTAATATTTTCAATAATTTAATTTTTTTAATGTGTTTAATAATTTACAATAAAAATTACAA
1 AAAATTAATATGTGCAATAATTTAATTTTTTGAATGTGTTTAATAATTCACAATAAAAATTACAA
8542790 TTG
66 TTG
* *
8542793 AAAATTAATATGTGCAATAGTTTAATTTTTTGACATG-G-TTAATAATTCGCAATAAAAATTAC
1 AAAATTAATATGTGCAATAATTTAATTTTTTGA-ATGTGTTTAATAATTCACAATAAAAATTAC
8542855 TAGATAGATA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
67 22 0.40
68 30 0.55
69 3 0.05
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (68 bp):
AAAATTAATATGTGCAATAATTTAATTTTTTGAATGTGTTTAATAATTCACAATAAAAATTACAA
TTG
Found at i:8550550 original size:44 final size:44
Alignment explanation
Indices: 8550499--8550586 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
8550489 AATATGTTAG
*
8550499 AATTTTTCAAAATTGTAAAAAATAATAAAAATTTTTAAAAACTA
1 AATTTTTCAAAATTGTAAAAAATAATAAAAAATTTTAAAAACTA
8550543 AATTTTTCAAAATTGTAAAAAATAATAAAAAATTTTAAAAACTA
1 AATTTTTCAAAATTGTAAAAAATAATAAAAAATTTTAAAAACTA
8550587 CAAAAAAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (44 bp):
AATTTTTCAAAATTGTAAAAAATAATAAAAAATTTTAAAAACTA
Found at i:8550564 original size:10 final size:10
Alignment explanation
Indices: 8550551--8550670 Score: 70
Period size: 10 Copynumber: 12.4 Consensus size: 10
8550541 TAAATTTTTC
*
8550551 AAAATTGTAA
1 AAAATTATAA
*
8550561 AAAATAATAA
1 AAAATTATAA
*
8550571 AAAATT-TTA
1 AAAATTATAA
* *
8550580 AAAACTACAAA
1 AAAATTA-TAA
8550591 AAAATTAT-A
1 AAAATTATAA
*
8550600 AAAATTATTA
1 AAAATTATAA
* *
8550610 GAAATTGTAA
1 AAAATTATAA
*
8550620 AAAATTGT-A
1 AAAATTATAA
*
8550629 AAAATCAT-A
1 AAAATTATAA
*
8550638 AAAA-TATTA
1 AAAATTATAA
* *
8550647 GAAATCATAA
1 AAAATTATAA
*
8550657 AAAATTGTAA
1 AAAATTATAA
8550667 AAAA
1 AAAA
8550671 AATATTTAAA
Statistics
Matches: 83, Mismatches: 22, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
8 2 0.02
9 32 0.39
10 42 0.51
11 7 0.08
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (10 bp):
AAAATTATAA
Found at i:8550574 original size:20 final size:20
Alignment explanation
Indices: 8550507--8550624 Score: 78
Period size: 20 Copynumber: 5.8 Consensus size: 20
8550497 AGAATTTTTC
8550507 AAAATTGTAAAAAATAATAA
1 AAAATTGTAAAAAATAATAA
* * * **
8550527 AAATTTTTAAAAACTAAATTTTTC
1 AAAATTGTAAAAAAT-AA---TAA
8550551 AAAATTGTAAAAAATAATAA
1 AAAATTGTAAAAAATAATAA
* *
8550571 AAAATTTTAAAAACTACA-AA
1 AAAATTGTAAAAAATA-ATAA
* * *
8550591 AAAATTAT-AAAAATTATTA
1 AAAATTGTAAAAAATAATAA
*
8550610 GAAATTGTAAAAAAT
1 AAAATTGTAAAAAAT
8550625 TGTAAAAATC
Statistics
Matches: 73, Mismatches: 18, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
18 1 0.01
19 12 0.16
20 42 0.58
21 3 0.04
23 2 0.03
24 13 0.18
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (20 bp):
AAAATTGTAAAAAATAATAA
Found at i:8550625 original size:29 final size:28
Alignment explanation
Indices: 8550546--8550642 Score: 86
Period size: 29 Copynumber: 3.4 Consensus size: 28
8550536 AAAACTAAAT
* *
8550546 TTTTCAAAATTGTAAAAAATAATAAAAAA
1 TTTTAAAAATTGTAAAAAATTAT-AAAAA
***
8550575 TTTTAAAAACTACAAAAAAATTATAAAAA
1 TTTTAAAAA-TTGTAAAAAATTATAAAAA
* *
8550604 TTATTAGAAATTGTAAAAAATTGTAAAAA
1 TT-TTAAAAATTGTAAAAAATTATAAAAA
**
8550633 TCATAAAAAT
1 TTTTAAAAAT
8550643 ATTAGAAATC
Statistics
Matches: 53, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
28 6 0.11
29 31 0.58
30 16 0.30
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (28 bp):
TTTTAAAAATTGTAAAAAATTATAAAAA
Found at i:8550640 original size:18 final size:19
Alignment explanation
Indices: 8550617--8550669 Score: 74
Period size: 18 Copynumber: 2.8 Consensus size: 19
8550607 TTAGAAATTG
8550617 TAAAAAATTGTAAAAATCA
1 TAAAAAATTGTAAAAATCA
*
8550636 T-AAAAATAT-TAGAAATCA
1 TAAAAAAT-TGTAAAAATCA
8550654 TAAAAAATTGTAAAAA
1 TAAAAAATTGTAAAAA
8550670 AAATATTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 16 0.55
19 13 0.45
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (19 bp):
TAAAAAATTGTAAAAATCA
Found at i:8550658 original size:37 final size:38
Alignment explanation
Indices: 8550590--8550669 Score: 126
Period size: 37 Copynumber: 2.1 Consensus size: 38
8550580 AAAACTACAA
* **
8550590 AAAAATTATAAAAATTATTAGAAATTGTAAAAAATTGT
1 AAAAATCATAAAAATTATTAGAAATCATAAAAAATTGT
8550628 AAAAATCATAAAAA-TATTAGAAATCATAAAAAATTGT
1 AAAAATCATAAAAATTATTAGAAATCATAAAAAATTGT
8550665 AAAAA
1 AAAAA
8550670 AAATATTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 26 0.67
38 13 0.33
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (38 bp):
AAAAATCATAAAAATTATTAGAAATCATAAAAAATTGT
Found at i:8553447 original size:58 final size:58
Alignment explanation
Indices: 8553343--8553459 Score: 162
Period size: 58 Copynumber: 2.0 Consensus size: 58
8553333 AAACTTCCTA
* * * *
8553343 ACATATTTATTTTTAGAATTTTTAGAAGATTTATTATACAACGGAAATAACACAAAAC
1 ACATATTTATTTTTAGAATTTTTAGAAGACTAATTAAACAACGGAAAGAACACAAAAC
* * * *
8553401 ACATTTTTATTTTTAGAATTTTTGGAGGACTAATTAAACAAGGGAAAGAACACAAAAC
1 ACATATTTATTTTTAGAATTTTTAGAAGACTAATTAAACAACGGAAAGAACACAAAAC
8553459 A
1 A
8553460 TATAAAATTG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.33
Consensus pattern (58 bp):
ACATATTTATTTTTAGAATTTTTAGAAGACTAATTAAACAACGGAAAGAACACAAAAC
Found at i:8565486 original size:3 final size:3
Alignment explanation
Indices: 8565478--8565513 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
8565468 GAAATAAGAG
*
8565478 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8565514 CAAAACAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8573298 original size:223 final size:223
Alignment explanation
Indices: 8572910--8573355 Score: 770
Period size: 223 Copynumber: 2.0 Consensus size: 223
8572900 ACATAAAGAA
* * *
8572910 ACCCAAAGAACTTTTAAGGAAATTGAATGGAGATCTTTAGGCTTGAAGTAGATCTTGTTTCCGAG
1 ACCCAAAGAACTTCTAAGGAAATTGAATGGAGATCTTTAGGCTTGAAGTAGATCCTGCTTCCGAG
* *
8572975 CTAATTTCGTTGGCTGTCTTCGAGTATTCTCTGCCTTCTACTCTCCGTCCCCCATTTGATCCTCT
66 CTAATTCCGTTGGCTGTCTTCAAGTATTCTCTGCCTTCTACTCTCCGTCCCCCATTTGATCCTCT
8573040 TCTCCTTTGTTTAAGTAGACTTTGGAATGCCCAAAATATTCAAAAATTAGCCTTTT-CTGAGTAG
131 TCTCCTTTGTTTAAGTAGACTTTGGAATGCCCAAAATATTCAAAAATTAGCCTTTTCCT-AGTAG
*
8573104 AATTAAAATAGGTTCTGACAGGGACACGG
195 AATTAAAATAGGTTCCGACAGGGACACGG
8573133 ACCCAAAGAACTTCTAAGGAAATTGAATGGAGAT-TTTCAGGCTTGAAGTAGATCCTGCTTCCGA
1 ACCCAAAGAACTTCTAAGGAAATTGAATGGAGATCTTT-AGGCTTGAAGTAGATCCTGCTTCCGA
* * *
8573197 GCTGATTCCGTTGGCTGTCTTCAAGTATTCTCTGCCTTCTACTTTCTGTCCCCCATTTGATCCTC
65 GCTAATTCCGTTGGCTGTCTTCAAGTATTCTCTGCCTTCTACTCTCCGTCCCCCATTTGATCCTC
8573262 TTCTCCTTTGTTTAAGTAGACTTTGGAATGCCCAAAATATTCAAAAATTAGCCTTTTCCTAGTAG
130 TTCTCCTTTGTTTAAGTAGACTTTGGAATGCCCAAAATATTCAAAAATTAGCCTTTTCCTAGTAG
*
8573327 AATTAAAATAGGTTCCGACTGGGACACGG
195 AATTAAAATAGGTTCCGACAGGGACACGG
8573356 CAGTGTGACA
Statistics
Matches: 211, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
222 3 0.01
223 206 0.98
224 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (223 bp):
ACCCAAAGAACTTCTAAGGAAATTGAATGGAGATCTTTAGGCTTGAAGTAGATCCTGCTTCCGAG
CTAATTCCGTTGGCTGTCTTCAAGTATTCTCTGCCTTCTACTCTCCGTCCCCCATTTGATCCTCT
TCTCCTTTGTTTAAGTAGACTTTGGAATGCCCAAAATATTCAAAAATTAGCCTTTTCCTAGTAGA
ATTAAAATAGGTTCCGACAGGGACACGG
Found at i:8573848 original size:105 final size:105
Alignment explanation
Indices: 8573726--8574088 Score: 399
Period size: 105 Copynumber: 3.5 Consensus size: 105
8573716 TAACGAACTA
* * *
8573726 TTTAGGAGTTGCAATCTTAAATTAACTAACTCAAATAAATTTAGGTTGCGATCTTAAATCAACTA
1 TTTAGAAGTTGCAATCTTAAATTAACTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAACTA
* * *
8573791 ACCTTTGTAATATCAGCTGTGAACGTAGGTTAACGAGTTG
66 ACCTTTGTAATATCAGCTGTGAACGTAGGTCAACAAGCTG
*
8573831 TTTCA-AAGTTGCAATCTTAAA-TATGCTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAAC
1 TTT-AGAAGTTGCAATCTTAAATTA-ACTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAAC
* **
8573894 TAACCTTTGTAATATTAGCTGTGAACGTAGGTCAGTAAGCTG
64 TAACCTTTGTAATATCAGCTGTGAACGTAGGTCAACAAGCTG
** * * * *
8573936 TTTAGAAGTTGTGATATTAAATCT-ACTAACTCAAAGAAACTTAGGTTGCAATCTAAAATCAGCT
1 TTTAGAAGTTGCAATCTTAAAT-TAACTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAACT
* * * * * * *
8574000 AACCTTTATAATAGCAGTTGTGAACGTGGGTCATCGAGCTA
65 AACCTTTGTAATATCAGCTGTGAACGTAGGTCAACAAGCTG
* * ** * * * *
8574041 TTTAGGATTTGTGATTTTAAATTTACTAACTCGAAGAAACTTTGGTTG
1 TTTAGAAGTTGCAATCTTAAATTAACTAACTCAAAGAAACTTAGGTTG
8574089 TCCATATTTG
Statistics
Matches: 221, Mismatches: 31, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
104 4 0.02
105 215 0.97
106 1 0.00
107 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (105 bp):
TTTAGAAGTTGCAATCTTAAATTAACTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAACTA
ACCTTTGTAATATCAGCTGTGAACGTAGGTCAACAAGCTG
Found at i:8575691 original size:196 final size:196
Alignment explanation
Indices: 8575357--8575750 Score: 716
Period size: 196 Copynumber: 2.0 Consensus size: 196
8575347 TCGATACCAA
*
8575357 ATGTAAAAATACCGTTACTTGTGTTCAAAAATGGTAAAAATTAATTTTTAAAAGATGCACTTATG
1 ATGTAAAAATACCGTTACTTGTGTTCAAAAATGGTAAAAACTAATTTTTAAAAGATGCACTTATG
8575422 CTCAAAACTTGCCTAAACTCAAATAACATACCTAAACATGAAAAAAGGCATGCAAATCATCATTT
66 CTCAAAACTTGCCTAAACTCAAATAACATACCTAAACATGAAAAAAGGCATGCAAATCATCATTT
* *
8575487 AAATATCTTATCCATGTACAGCTCTATTCAGTACATCAAAATATAAGCCAAATATATATCCTTAA
131 AAATATCTTATCCATGTACAACTCTATGCAGTACATCAAAATATAAGCCAAATATATATCCTTAA
8575552 G
196 G
* *
8575553 ATGTAAAAATATCGTTACTTGTGTTCAAAAATGGTAAAAACTAATTTTTAAAAGATGCATTTATG
1 ATGTAAAAATACCGTTACTTGTGTTCAAAAATGGTAAAAACTAATTTTTAAAAGATGCACTTATG
*
8575618 CTCAAAACTTGCCTAAACTCAAATAACATACCTAAACATGAAAAAAGGCCTGCAAATCATCATTT
66 CTCAAAACTTGCCTAAACTCAAATAACATACCTAAACATGAAAAAAGGCATGCAAATCATCATTT
* *
8575683 ATATATCTTATCCATGTACAACTCTATGCAGTACATCAAAATCTAAGCCAAATATATATCCTTAA
131 AAATATCTTATCCATGTACAACTCTATGCAGTACATCAAAATATAAGCCAAATATATATCCTTAA
8575748 G
196 G
8575749 AT
1 AT
8575751 CAACAAACTT
Statistics
Matches: 190, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
196 190 1.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (196 bp):
ATGTAAAAATACCGTTACTTGTGTTCAAAAATGGTAAAAACTAATTTTTAAAAGATGCACTTATG
CTCAAAACTTGCCTAAACTCAAATAACATACCTAAACATGAAAAAAGGCATGCAAATCATCATTT
AAATATCTTATCCATGTACAACTCTATGCAGTACATCAAAATATAAGCCAAATATATATCCTTAA
G
Found at i:8582197 original size:13 final size:13
Alignment explanation
Indices: 8582164--8582276 Score: 106
Period size: 13 Copynumber: 9.6 Consensus size: 13
8582154 AAATATCTTT
8582164 ACTCCACTAAACC
1 ACTCCACTAAACC
8582177 ACT---C-AAACC
1 ACTCCACTAAACC
8582186 ACTCCACTAAACC
1 ACTCCACTAAACC
* *
8582199 ATTACACTAAACC
1 ACTCCACTAAACC
8582212 ACTCCACTAAACC
1 ACTCCACTAAACC
8582225 AC-CC-C--AACC
1 ACTCCACTAAACC
* *
8582234 ACCCCATTAAACC
1 ACTCCACTAAACC
8582247 ACTCCACTAAACC
1 ACTCCACTAAACC
8582260 A--CC-CT-AACC
1 ACTCCACTAAACC
8582269 ACTCCACT
1 ACTCCACT
8582277 TGCCTACAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
9 19 0.23
10 5 0.06
11 5 0.06
12 5 0.06
13 48 0.59
ACGTcount: A:0.38, C:0.47, G:0.00, T:0.15
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:8582234 original size:35 final size:35
Alignment explanation
Indices: 8582202--8582270 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
8582192 CTAAACCATT
8582202 ACACTAAACCACTCCACTAAACCACCCCAACCACC
1 ACACTAAACCACTCCACTAAACCACCCCAACCACC
* * *
8582237 CCATTAAACCACTCCACTAAACCACCCTAACCAC
1 ACACTAAACCACTCCACTAAACCACCCCAACCAC
8582271 TCCACTTGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.49, G:0.00, T:0.12
Consensus pattern (35 bp):
ACACTAAACCACTCCACTAAACCACCCCAACCACC
Found at i:8582234 original size:48 final size:48
Alignment explanation
Indices: 8582164--8582261 Score: 142
Period size: 48 Copynumber: 2.0 Consensus size: 48
8582154 AAATATCTTT
* * *
8582164 ACTCCACTAAACCACTCAAACCACTCCACTAAACCATTACACTAAACC
1 ACTCCACTAAACCACCCAAACCACCCCACTAAACCACTACACTAAACC
* * *
8582212 ACTCCACTAAACCACCCCAACCACCCCATTAAACCACTCCACTAAACC
1 ACTCCACTAAACCACCCAAACCACCCCACTAAACCACTACACTAAACC
8582260 AC
1 AC
8582262 CCTAACCACT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.40, C:0.46, G:0.00, T:0.14
Consensus pattern (48 bp):
ACTCCACTAAACCACCCAAACCACCCCACTAAACCACTACACTAAACC
Found at i:8582736 original size:33 final size:39
Alignment explanation
Indices: 8582657--8582743 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 39
8582647 TTTAATATTG
*
8582657 TTATTATTTTCTATTATTATTACTAATACCACTATTATCA
1 TTATTA-TTACTATTATTATTACTAATACCACTATTATCA
*
8582697 TCATTATTACTATTA-TATTA-TAATA-C-CT-TT-TCA
1 TTATTATTACTATTATTATTACTAATACCACTATTATCA
*
8582730 TTATTATAACTATT
1 TTATTATTACTATT
8582744 GTGTTTTTAC
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
33 15 0.35
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.12
38 5 0.12
39 8 0.19
40 5 0.12
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.53
Consensus pattern (39 bp):
TTATTATTACTATTATTATTACTAATACCACTATTATCA
Found at i:8588803 original size:3 final size:3
Alignment explanation
Indices: 8588795--8588836 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
8588785 TGTTGGTAGA
8588795 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8588837 GCTCACTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8593127 original size:105 final size:104
Alignment explanation
Indices: 8592948--8593221 Score: 313
Period size: 105 Copynumber: 2.6 Consensus size: 104
8592938 AATTGACGGA
* * *
8592948 TAAGACCATGGTTGGACCATGGCAA-A-GTGTTAAATGTAAGACCATAGCTGGGCTATGGCATTT
1 TAAGACCATGGTTGGACCATGGCAATATATGTTAAATGTAAGACCATAACTGGGCTATGGCATCT
* *
8593011 CAGTGAAAAGACCATAACT-AGGTTATGGCACATTGTACG
66 CAGTGAAAAGACCATAACTGA-GTTATGACACATTGAACG
* *
8593050 TAAGACCATGGTTGGACCATGGCAATATATGTATAAGTGTAAGACCATAATTGGGCTATGGCATC
1 TAAGACCATGGTTGGACCATGGCAATATATGT-TAAATGTAAGACCATAACTGGGCTATGGCATC
* * * **
8593115 -CTGATGATAAGACTATAACTGAGTTATGACATTTTGAACG
65 TCAG-TGAAAAGACCATAACTGAGTTATGACACATTGAACG
* * * * *
8593155 TAAGACCATGGTTGGACCATGGCAGTATATGTGTGTACATGTAAGACCATAGCTAGGCTATAGCA
1 TAAGACCATGGTTGGACCATGGCA--ATATATGT-TAAATGTAAGACCATAACTGGGCTATGGCA
8593220 TC
63 TC
8593222 GTGATTAAGT
Statistics
Matches: 145, Mismatches: 20, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
102 25 0.17
103 1 0.01
104 5 0.03
105 80 0.55
106 1 0.01
107 33 0.23
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (104 bp):
TAAGACCATGGTTGGACCATGGCAATATATGTTAAATGTAAGACCATAACTGGGCTATGGCATCT
CAGTGAAAAGACCATAACTGAGTTATGACACATTGAACG
Found at i:8595134 original size:37 final size:37
Alignment explanation
Indices: 8595093--8595182 Score: 96
Period size: 37 Copynumber: 2.5 Consensus size: 37
8595083 TCACATTCTT
* *
8595093 AATATTTTAAGAATAAAT-ATATA-AATTATAAATTATA
1 AATATTTTAATAATAAATGATATATAA-TATAAAATA-A
* * *
8595130 AATA-TCTAATAATAAATGTTTTATAATATAAAATAA
1 AATATTTTAATAATAAATGATATATAATATAAAATAA
8595166 AATATTTTAATAATAAA
1 AATATTTTAATAATAAA
8595183 AACATGAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
36 16 0.36
37 26 0.59
38 2 0.05
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (37 bp):
AATATTTTAATAATAAATGATATATAATATAAAATAA
Found at i:8595173 original size:22 final size:22
Alignment explanation
Indices: 8595143--8595184 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8595133 ATCTAATAAT
*
8595143 AAATGTTTT-ATAATATAAAATA
1 AAATATTTTAATAATA-AAAATA
8595165 AAATATTTTAATAATAAAAA
1 AAATATTTTAATAATAAAAA
8595185 CATGAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAATATTTTAATAATAAAAATA
Found at i:8595429 original size:16 final size:15
Alignment explanation
Indices: 8595409--8595457 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
8595399 TTAAAATGGT
8595409 AATTTTTTAATTTAA
1 AATTTTTTAATTTAA
*
8595424 ATATTTTATAATTTATA
1 A-ATTTTTTAATTTA-A
* *
8595441 AAATTTTAAATTTAA
1 AATTTTTTAATTTAA
8595456 AA
1 AA
8595458 ATTATACTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 4 0.14
16 22 0.79
17 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTTTTTAATTTAA
Found at i:8621322 original size:17 final size:17
Alignment explanation
Indices: 8621290--8621323 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8621280 CAATTTCCTT
*
8621290 ATTGTTATTCTCAATTA
1 ATTGTTATTATCAATTA
*
8621307 ATTGTTATTATTAATTA
1 ATTGTTATTATCAATTA
8621324 TTTATTATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (17 bp):
ATTGTTATTATCAATTA
Found at i:8624747 original size:17 final size:17
Alignment explanation
Indices: 8624725--8624774 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
8624715 ACACGTTAAA
8624725 GCCCGATAAATGA-AAGT
1 GCCCGATAAATGATAA-T
* *
8624742 GCCCGATCAATTATAAT
1 GCCCGATAAATGATAAT
*
8624759 GCCCGACAAATGATAA
1 GCCCGATAAATGATAA
8624775 ATGATAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:8632212 original size:39 final size:39
Alignment explanation
Indices: 8632136--8632267 Score: 140
Period size: 39 Copynumber: 3.4 Consensus size: 39
8632126 GAATTCAATC
* * * * *
8632136 ACCAACACAAAGCCTACGGGACTTTAAGCCCGGATATAGT
1 ACCAGCACGAAGCCTAC-GGACCTTAAGTCCGAATATAGT
*
8632176 ACCAGTACGAAGCCTACGGACCTTAAGTCCGAATATAGT
1 ACCAGCACGAAGCCTACGGACCTTAAGTCCGAATATAGT
* * * *
8632215 ACCAGCACGAAGCCTGCGGATCTTAAGTCCGGATA-AAT
1 ACCAGCACGAAGCCTACGGACCTTAAGTCCGAATATAGT
* *
8632253 TCCAGCACAAAGCCT
1 ACCAGCACGAAGCCT
8632268 GCGGGTCTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 15 0.19
39 50 0.63
40 14 0.18
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.18
Consensus pattern (39 bp):
ACCAGCACGAAGCCTACGGACCTTAAGTCCGAATATAGT
Found at i:8632280 original size:39 final size:40
Alignment explanation
Indices: 8632141--8632410 Score: 312
Period size: 40 Copynumber: 6.8 Consensus size: 40
8632131 CAATCACCAA
* * * *
8632141 CACAAAGCCTACGGGACTTTAAGCCCGGATATAGTACCAG
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAG
* * * * * * * * *
8632181 TACGAAGCCTAC-GGACCTTAAGTCCGAATATAGTACCAG
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAG
* * *
8632220 CACGAAGCCTGCGGATC-TTAAGTCCGGATA-AATTCCAG
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAG
* *
8632258 CACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTTCAG
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAG
* *
8632298 CACGAAGCCTGTGGGTCTTTAAGCCCGGATATAATTCCAG
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAG
*
8632338 CACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAG
* *
8632378 CATATAGCCTGCGGGTCTTTAAGCCCGGATATA
1 CACAAAGCCTGCGGGTCTTTAAGCCCGGATATA
8632411 CATCAAATAT
Statistics
Matches: 201, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
38 21 0.10
39 58 0.29
40 122 0.61
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.22
Consensus pattern (40 bp):
CACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAG
Found at i:8652542 original size:27 final size:27
Alignment explanation
Indices: 8652511--8652597 Score: 90
Period size: 27 Copynumber: 3.1 Consensus size: 27
8652501 TTTCCTCATA
8652511 TTTTTGAATAACATAAAGAACTATGAG
1 TTTTTGAATAACATAAAGAACTATGAG
*
8652538 TTTTTGAATAACATAAAGTCAA-TGATTATGG
1 TTTTTGAATAACATAAAG--AACT-ATGA--G
*
8652569 TTTTTGAATAAC--AAAGGACTATGAG
1 TTTTTGAATAACATAAAGAACTATGAG
8652594 TTTT
1 TTTT
8652598 GATTTTTTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
25 5 0.10
27 22 0.43
28 2 0.04
29 9 0.18
31 13 0.25
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.38
Consensus pattern (27 bp):
TTTTTGAATAACATAAAGAACTATGAG
Found at i:8652604 original size:31 final size:31
Alignment explanation
Indices: 8652510--8652604 Score: 83
Period size: 31 Copynumber: 3.2 Consensus size: 31
8652500 TTTTCCTCAT
* *
8652510 ATTTTTGAATAACATAAAGA-ACT-ATGA-G
1 ATTTTTGAATAACATAAAGACAATGATTATG
*
8652538 -TTTTTGAATAACATAAAGTCAATGATTATG
1 ATTTTTGAATAACATAAAGACAATGATTATG
* * * *
8652568 GTTTTTGAATAACA-AAGGACTATGAGTTTTG
1 ATTTTTGAATAACATAAAGACAATGA-TTATG
8652599 ATTTTT
1 ATTTTT
8652605 TATTTCACAT
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
27 18 0.33
28 2 0.04
29 3 0.06
30 9 0.17
31 22 0.41
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.40
Consensus pattern (31 bp):
ATTTTTGAATAACATAAAGACAATGATTATG
Found at i:8657682 original size:23 final size:23
Alignment explanation
Indices: 8657599--8657686 Score: 72
Period size: 23 Copynumber: 3.7 Consensus size: 23
8657589 CTCACCACAA
*
8657599 CTCGTATGAGCTTACCGATATATAAG
1 CTCGTATGAGCTTA-CGAT-T-TCAG
* *
8657625 CTCGTAAGAGCTTACTATTTTCAG
1 CTCGTATGAGCTTACGA-TTTCAG
*
8657649 CTCAT-TGGAGCTTATC-ATTTCAG
1 CTCGTAT-GAGCTTA-CGATTTCAG
8657672 CTCGTATGAGCTTAC
1 CTCGTATGAGCTTAC
8657687 TGTTCTCAAC
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
22 1 0.02
23 17 0.33
24 16 0.31
25 4 0.08
26 14 0.27
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (23 bp):
CTCGTATGAGCTTACGATTTCAG
Found at i:8659266 original size:19 final size:19
Alignment explanation
Indices: 8659226--8659268 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8659216 ATTGAATGTG
**
8659226 AATGAATGATATTTAGTGA
1 AATGAATGATATTTAGAAA
8659245 AATGAGATGATATTT-GAAA
1 AATGA-ATGATATTTAGAAA
8659264 AATGA
1 AATGA
8659269 TTGTTCTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.33
Consensus pattern (19 bp):
AATGAATGATATTTAGAAA
Found at i:8662849 original size:13 final size:13
Alignment explanation
Indices: 8662831--8662856 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8662821 TCGTATTTCC
8662831 AAAACCATTTGTT
1 AAAACCATTTGTT
8662844 AAAACCATTTGTT
1 AAAACCATTTGTT
8662857 TGCATAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAACCATTTGTT
Found at i:8663745 original size:37 final size:37
Alignment explanation
Indices: 8663702--8663783 Score: 146
Period size: 37 Copynumber: 2.2 Consensus size: 37
8663692 TGGCTTTCCC
* *
8663702 TGTGTGGTTCCCACGGCCTAGCCCAAACCCACATGCT
1 TGTGTGGCTCACACGGCCTAGCCCAAACCCACATGCT
8663739 TGTGTGGCTCACACGGCCTAGCCCAAACCCACATGCT
1 TGTGTGGCTCACACGGCCTAGCCCAAACCCACATGCT
8663776 TGTGTGGC
1 TGTGTGGC
8663784 CTGTCTGTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.18, C:0.35, G:0.24, T:0.22
Consensus pattern (37 bp):
TGTGTGGCTCACACGGCCTAGCCCAAACCCACATGCT
Found at i:8666250 original size:21 final size:21
Alignment explanation
Indices: 8666226--8666269 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8666216 CTTTCCTATG
* *
8666226 TTCAATTGATTGTTTCTTGTT
1 TTCAATTGATTATTACTTGTT
8666247 TTCAATTGATTATTACTTGTT
1 TTCAATTGATTATTACTTGTT
8666268 TT
1 TT
8666270 TTGTAACACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.18, C:0.09, G:0.11, T:0.61
Consensus pattern (21 bp):
TTCAATTGATTATTACTTGTT
Found at i:8668479 original size:28 final size:28
Alignment explanation
Indices: 8668447--8668503 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 28
8668437 TAGCATCTCT
8668447 TAAATCATATC-TTTCATATTCATGAATA
1 TAAATCATA-CATTTCATATTCATGAATA
8668475 TAAATCATACATTTCATATTCATGAATA
1 TAAATCATACATTTCATATTCATGAATA
8668503 T
1 T
8668504 TCATACTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 1 0.04
28 27 0.96
ACGTcount: A:0.40, C:0.14, G:0.04, T:0.42
Consensus pattern (28 bp):
TAAATCATACATTTCATATTCATGAATA
Found at i:8668713 original size:33 final size:32
Alignment explanation
Indices: 8668676--8668803 Score: 82
Period size: 33 Copynumber: 3.9 Consensus size: 32
8668666 GTTTACTTTG
8668676 TGCCATAGCCCAACTATGGTCTTACATATGCAT
1 TGCCATAGCCCAACTATGGTCTTACATATG-AT
* * ** *
8668709 TGCCATGGTCCTGCCATGGTCTTACAT-TCGTAGT
1 TGCCATAGCCCAACTATGGTCTTACATAT-G-A-T
* ** * *
8668743 T-CCATAACCCAGTTATGATCTTATCATCA-GAA
1 TGCCATAGCCCAACTATGGTCTTA-CAT-ATGAT
*
8668775 TGCCATAGCCCAACTATGGTCTTATATAT
1 TGCCATAGCCCAACTATGGTCTTACATAT
8668804 AAACACTACC
Statistics
Matches: 69, Mismatches: 19, Indels: 15
0.67 0.18 0.15
Matches are distributed among these distances:
31 1 0.01
32 4 0.06
33 58 0.84
34 6 0.09
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (32 bp):
TGCCATAGCCCAACTATGGTCTTACATATGAT
Found at i:8668891 original size:87 final size:87
Alignment explanation
Indices: 8668744--8668913 Score: 286
Period size: 87 Copynumber: 2.0 Consensus size: 87
8668734 ATTCGTAGTT
*
8668744 CCATAACCCAGTTATGATCTTATCATCAGAATGCCATAGCCCAACTATGGTCTTATATATAAACA
1 CCATAACCCAGTTATGATCTTATCATCAGAATGCCATAGCCCAACTATGGTCTTACATATAAACA
8668809 CTACCACGGTCAAACCATGGTG
66 CTACCACGGTCAAACCATGGTG
* *
8668831 CCATAACCTAGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTATGGTCTTACATATAAACA
1 CCATAACCCAGTTATGATCTTATCATCAGAATGCCATAGCCCAACTATGGTCTTACATATAAACA
* * *
8668896 CTCCCATGGTCCAACCAT
66 CTACCACGGTCAAACCAT
8668914 ACTCTTACGT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 77 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (87 bp):
CCATAACCCAGTTATGATCTTATCATCAGAATGCCATAGCCCAACTATGGTCTTACATATAAACA
CTACCACGGTCAAACCATGGTG
Found at i:8672419 original size:33 final size:33
Alignment explanation
Indices: 8672382--8672444 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
8672372 TGATCTGTGG
*
8672382 GGATCCTATAGAGTTTCTACTCATGGTGGTTAA
1 GGATCCTATAGAGTCTCTACTCATGGTGGTTAA
8672415 GGATCCTATAGAGTCTCTACTCATGGTGGT
1 GGATCCTATAGAGTCTCTACTCATGGTGGT
8672445 CATAGGTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.35
Consensus pattern (33 bp):
GGATCCTATAGAGTCTCTACTCATGGTGGTTAA
Found at i:8675509 original size:26 final size:25
Alignment explanation
Indices: 8675480--8675541 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
8675470 AAATTAAAAG
* * *
8675480 TTAAAATTCAATATTCTAATTATGCT
1 TTAAAATTCAATATCCTAA-CATGCC
* * *
8675506 TTAAAGTTTAATATCCTGACATGCC
1 TTAAAATTCAATATCCTAACATGCC
8675531 TTAAAATTCAA
1 TTAAAATTCAA
8675542 AATCAAAATA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.40
Consensus pattern (25 bp):
TTAAAATTCAATATCCTAACATGCC
Found at i:8676015 original size:73 final size:73
Alignment explanation
Indices: 8675919--8676224 Score: 183
Period size: 74 Copynumber: 4.1 Consensus size: 73
8675909 AAGAAATATA
* * ** *
8675919 GTGACAATTTAATTTTGTTACAATTGCTTGTGA-GTTTAGTGTAAAAAAATTGGTCACAAACAAA
1 GTGACCATTTAA-TTTGTCACAATTGCTTAAGATGTTTAGTGTAAAAAAATTGGCCACAAA-AAA
*
8675983 TTTAATAATT
64 TTGAATAATT
* * * *
8675993 GTG-CCTATTTAATTTGTCACAATTGCTTAAGATTTTTAGTGTACAAAACTTGGCCATAAAAAAT
1 GTGACC-ATTTAATTTGTCACAATTGCTTAAGATGTTTAGTGTAAAAAAATTGGCCACAAAAAAT
*
8676057 TGAATAGTT
65 TGAATAATT
* * * * ** * ** *
8676066 GTGACCATTTACATTTGACATAATTACTTACA-AT-TTTAGTATTTGACATTTTGGTCACAAAAA
1 GTGACCATTTA-ATTTGTCACAATTGCTTA-AGATGTTTAGT-GTAAAAAAATTGGCCACAAAAA
**
8676129 ATTGAATACCT
63 ATTGAATAATT
* * * * * * ***
8676140 GTTACCATTTATTTTTTTTCACAATTGCTTACAG-TTTTTA-TGTCAAAAATTTCATCACAAAAA
1 GTGACCATTTA--ATTTGTCACAATTGCTTA-AGATGTTTAGTGTAAAAAAATTGGCCACAAAAA
8676203 TATTGAATAATT
63 -ATTGAATAATT
*
8676215 GTGACGATTT
1 GTGACCATTT
8676225 CATAACAGCT
Statistics
Matches: 180, Mismatches: 42, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
73 43 0.24
74 98 0.54
75 35 0.19
76 4 0.02
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (73 bp):
GTGACCATTTAATTTGTCACAATTGCTTAAGATGTTTAGTGTAAAAAAATTGGCCACAAAAAATT
GAATAATT
Found at i:8680430 original size:21 final size:21
Alignment explanation
Indices: 8680406--8680474 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
8680396 AACAGAAACC
*
8680406 CATAAAGGTTGAATAGAAGCT
1 CATAAAGGTTAAATAGAAGCT
* * *
8680427 CAT-AAGAGCTAAATGGAAACT
1 CATAAAG-GTTAAATAGAAGCT
* *
8680448 CATAAAAGTTAAACAGAAGCT
1 CATAAAGGTTAAATAGAAGCT
8680469 CA-AAAG
1 CATAAAG
8680475 AGCTTAATGG
Statistics
Matches: 36, Mismatches: 10, Indels: 5
0.71 0.20 0.10
Matches are distributed among these distances:
20 6 0.17
21 28 0.78
22 2 0.06
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (21 bp):
CATAAAGGTTAAATAGAAGCT
Found at i:8680431 original size:42 final size:42
Alignment explanation
Indices: 8680379--8680533 Score: 150
Period size: 42 Copynumber: 3.7 Consensus size: 42
8680369 AGGCGAAATT
* * *
8680379 GAAGCGCATAAGTGCGAAACAGAAACCCATAAAGGTTGAATA
1 GAAGCTCATAAGAGCGAAACGGAAACCCATAAAGGTTGAATA
* * * * * *
8680421 GAAGCTCATAAGAGCTAAATGGAAACTCATAAAAGTTAAACA
1 GAAGCTCATAAGAGCGAAACGGAAACCCATAAAGGTTGAATA
* ** * * *
8680463 GAAGCTCAAAAGAGCTTAATGGAAACCCATTAGGGTTGAATA
1 GAAGCTCATAAGAGCGAAACGGAAACCCATAAAGGTTGAATA
*
8680505 GAAGCTCGTAAGAGCTG-AACGGAAACCCA
1 GAAGCTCATAAGAGC-GAAACGGAAACCCA
8680534 ATAGGGTTAA
Statistics
Matches: 91, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.17
Consensus pattern (42 bp):
GAAGCTCATAAGAGCGAAACGGAAACCCATAAAGGTTGAATA
Found at i:8684257 original size:16 final size:17
Alignment explanation
Indices: 8684228--8684261 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
8684218 AAGGTTAATT
8684228 AGGTAAATAGTTAATAA
1 AGGTAAATAGTTAATAA
*
8684245 AGGTTAATA-TTAATAA
1 AGGTAAATAGTTAATAA
8684261 A
1 A
8684262 ACAAAAGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (17 bp):
AGGTAAATAGTTAATAA
Found at i:8685190 original size:43 final size:43
Alignment explanation
Indices: 8685142--8685305 Score: 190
Period size: 43 Copynumber: 3.8 Consensus size: 43
8685132 TATTGAGATG
*
8685142 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
* *
8685185 TGATTACGTATAAGACCATGTCTGGGACATTGGCATCGTATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
* * * * * *
8685228 TGATTTCATGTAAGACCCTGTCTGAGACAGTGGCATCG-ACATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA-TTA
* *
8685271 TGA-TAGCATGTAAGACCATATCTGGGATA-TGGCAT
1 TGATTA-CATGTAAGACCATGTCTGGGACATTGGCAT
8685306 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
42 8 0.08
43 95 0.92
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
Found at i:8685866 original size:60 final size:60
Alignment explanation
Indices: 8685798--8685915 Score: 209
Period size: 60 Copynumber: 2.0 Consensus size: 60
8685788 AGGTATGTAC
*
8685798 GGAAAACTACTCAAGTATCGAGTTATATAAAGTTGAGAACTTACGAATGAGGACATGAAT
1 GGAAAACTAATCAAGTATCGAGTTATATAAAGTTGAGAACTTACGAATGAGGACATGAAT
* *
8685858 GGAAAACTAATCAAGTATCGAGTTATATGAAGTTGAGAACTTGCGAATGAGGACATGA
1 GGAAAACTAATCAAGTATCGAGTTATATAAAGTTGAGAACTTACGAATGAGGACATGA
8685916 GTAATTTGAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.25
Consensus pattern (60 bp):
GGAAAACTAATCAAGTATCGAGTTATATAAAGTTGAGAACTTACGAATGAGGACATGAAT
Found at i:8686215 original size:19 final size:19
Alignment explanation
Indices: 8686191--8686227 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8686181 GGTCTTTATG
*
8686191 ATATGGTTGTTAGAAATGT
1 ATATGGTTATTAGAAATGT
*
8686210 ATATGGTTATTTGAAATG
1 ATATGGTTATTAGAAATG
8686228 GCTAATTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.43
Consensus pattern (19 bp):
ATATGGTTATTAGAAATGT
Found at i:8688741 original size:25 final size:25
Alignment explanation
Indices: 8688704--8688759 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 25
8688694 GTTGATTTAA
* **
8688704 TTTTTTAATAAGT-TATTAAAATAT
1 TTTTTTAAAAAGTATACAAAAATAT
8688728 TTTTTTAACAAAGTAATACAAAAATAT
1 TTTTTTAA-AAAGT-ATACAAAAATAT
8688755 TTTTT
1 TTTTT
8688760 ATCTTTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 8 0.31
25 4 0.15
27 14 0.54
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (25 bp):
TTTTTTAAAAAGTATACAAAAATAT
Found at i:8704779 original size:26 final size:26
Alignment explanation
Indices: 8704743--8704826 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
8704733 CATGAAATTC
8704743 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8704769 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
8704795 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
8704821 TTATCA
1 TTATCA
8704827 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:8709359 original size:30 final size:31
Alignment explanation
Indices: 8709324--8709433 Score: 88
Period size: 30 Copynumber: 3.7 Consensus size: 31
8709314 TTTAATTAAT
*
8709324 TTTTTAAAATTTTAAAAATTA-TAAAAACTA
1 TTTTTAAAATATTAAAAATTACTAAAAACTA
* * *
8709354 TTTTTAAAA-ATTAAAAATCATTTAAAACTA
1 TTTTTAAAATATTAAAAATTACTAAAAACTA
* * *
8709384 --TTAAAAAT-TATAAAAATTACAAATAAAATA
1 TTTTTAAAATAT-TAAAAATTACTAA-AAACTA
*
8709414 TTTTT-CAATATTAAAAATTA
1 TTTTTAAAATATTAAAAATTA
8709434 ATTAAATGCT
Statistics
Matches: 62, Mismatches: 11, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
28 7 0.11
29 18 0.29
30 22 0.35
31 12 0.19
32 3 0.05
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTTAAAATATTAAAAATTACTAAAAACTA
Found at i:8710571 original size:21 final size:23
Alignment explanation
Indices: 8710537--8710580 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
8710527 ATTTGTGCTT
8710537 GTATCAATCTTCT-A-CCTTCAC
1 GTATCAATCTTCTAAGCCTTCAC
8710558 GTATCATATC-TCTAAGCCTTCAC
1 GTATCA-ATCTTCTAAGCCTTCAC
8710581 TCTCTCACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 9 0.45
22 4 0.20
23 7 0.35
ACGTcount: A:0.25, C:0.32, G:0.07, T:0.36
Consensus pattern (23 bp):
GTATCAATCTTCTAAGCCTTCAC
Found at i:8711986 original size:13 final size:13
Alignment explanation
Indices: 8711968--8711992 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8711958 AATATTGCAT
8711968 GAAAATTTTTATA
1 GAAAATTTTTATA
8711981 GAAAATTTTTAT
1 GAAAATTTTTAT
8711993 CAAATATGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
GAAAATTTTTATA
Found at i:8712774 original size:37 final size:37
Alignment explanation
Indices: 8712724--8712800 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
8712714 CATAGTAATA
8712724 TAAAGAGAAATGGTATGATGAGCTCATCTATGCATTT
1 TAAAGAGAAATGGTATGATGAGCTCATCTATGCATTT
*
8712761 TAAAGAGAAATGGTATGATGAGCTCATCTATGTATTT
1 TAAAGAGAAATGGTATGATGAGCTCATCTATGCATTT
8712798 TAA
1 TAA
8712801 TATTTTTGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (37 bp):
TAAAGAGAAATGGTATGATGAGCTCATCTATGCATTT
Found at i:8720427 original size:41 final size:42
Alignment explanation
Indices: 8720328--8720443 Score: 137
Period size: 41 Copynumber: 2.8 Consensus size: 42
8720318 TGATTTTGTG
* * *
8720328 TAAGACCAAGTCTAAGACATTGGCATCGATATGAGATTACGTG
1 TAAGACCATGTCTAGGACATTGGCATCGATAT-AGATTACGTA
8720371 TAAGACCATGTCTAGGACATTGGCATCG-TATATGATT-CGTA
1 TAAGACCATGTCTAGGACATTGGCATCGATATA-GATTACGTA
* * **
8720412 TAAGACCCTGTCTAGGATAGAGGCATCGATAT
1 TAAGACCATGTCTAGGACATTGGCATCGATAT
8720444 GTGATAGCAT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 28 0.44
42 10 0.16
43 26 0.41
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (42 bp):
TAAGACCATGTCTAGGACATTGGCATCGATATAGATTACGTA
Found at i:8723017 original size:21 final size:20
Alignment explanation
Indices: 8722984--8723022 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8722974 TATATTATAT
*
8722984 TATATATATTAAATTATAAA
1 TATATATATTAAAATATAAA
8723004 TATATATCATTAAAATATA
1 TATATAT-ATTAAAATATA
8723023 GATTAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
TATATATATTAAAATATAAA
Found at i:8724057 original size:26 final size:27
Alignment explanation
Indices: 8724030--8724082 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
8724020 TTTGAAAAAA
*
8724030 TTTTCAAAGAGAAGAGAGAGAGAGAATT
1 TTTTCAAAGAAAAGAGAGAGAGAGAA-T
8724058 TTTTCAAAGAAAAGAGAGAGAGAGA
1 TTTTCAAAGAAAAGAGAGAGAGAGA
8724083 GAGGGGGGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.49, C:0.04, G:0.28, T:0.19
Consensus pattern (27 bp):
TTTTCAAAGAAAAGAGAGAGAGAGAAT
Found at i:8724246 original size:20 final size:21
Alignment explanation
Indices: 8724209--8724269 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 21
8724199 CTTTTCTTAA
*
8724209 AAAAATAAATTTTAAATTTTTT
1 AAAAAT-AATTTTGAATTTTTT
*
8724231 ATAAAT-ATTTTGAA--TTTT
1 AAAAATAATTTTGAATTTTTT
8724249 AAAAATAATTTTGTAATTTTT
1 AAAAATAATTTTG-AATTTTT
8724270 GTTGAAGGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
18 9 0.28
19 6 0.19
20 9 0.28
22 8 0.25
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (21 bp):
AAAAATAATTTTGAATTTTTT
Found at i:8731541 original size:5 final size:5
Alignment explanation
Indices: 8731494--8731524 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
8731484 AATCTGTTTT
8731494 TATTA TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA T
8731525 TTTTTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:8731541 original size:10 final size:10
Alignment explanation
Indices: 8731491--8731537 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
8731481 TCAAATCTGT
8731491 TTTTATTATA
1 TTTTATTATA
*
8731501 TTATATTATA
1 TTTTATTATA
*
8731511 TTATATTATA
1 TTTTATTATA
*
8731521 TTATT-TTTTA
1 TT-TTATTATA
8731531 TTTTATT
1 TTTTATT
8731538 TTATCTATCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 2 0.06
10 29 0.91
11 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTATTATA
Found at i:8732130 original size:18 final size:18
Alignment explanation
Indices: 8732084--8732119 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8732074 ATATTATATT
8732084 AATAAGATTAAAATTAAA
1 AATAAGATTAAAATTAAA
8732102 AATAAGATTAAAATTAAA
1 AATAAGATTAAAATTAAA
8732120 GTTAATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.28
Consensus pattern (18 bp):
AATAAGATTAAAATTAAA
Found at i:8732561 original size:24 final size:24
Alignment explanation
Indices: 8732517--8732563 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8732507 TAAATTTGAG
* *
8732517 ATTTAATTTTTTTATTTAATTTTA
1 ATTTAATTTTGTTATTCAATTTTA
8732541 ATTTAA-TTTGTTATCTCAATTTT
1 ATTTAATTTTGTTAT-TCAATTTT
8732564 TGAATATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (24 bp):
ATTTAATTTTGTTATTCAATTTTA
Found at i:8736750 original size:16 final size:15
Alignment explanation
Indices: 8736718--8736761 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 15
8736708 TAAAAGAGTG
8736718 AAAAAAAATCAAATA
1 AAAAAAAATCAAATA
* *
8736733 AAAATAAAATGAATTA
1 AAAA-AAAATCAAATA
8736749 AAAAAAAATCAAA
1 AAAAAAAATCAAA
8736762 ATAAGTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (15 bp):
AAAAAAAATCAAATA
Done.