Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 291 of 362
Found at i:97726147 original size:23 final size:23
Alignment explanation
Indices: 97726088--97726165 Score: 95
Period size: 23 Copynumber: 3.3 Consensus size: 23
97726078 AAAAATTACA
*
97726088 AAAAAAT-ATTTATATAAAAATTT
1 AAAAAATAATATAT-TAAAAATTT
97726111 AAAAATAATAATATATTAAAAATTT
1 -AAAA-AATAATATATTAAAAATTT
* *
97726136 TAAAAATAATATATAAAAAATTT
1 AAAAAATAATATATTAAAAATTT
97726159 AAAAAAT
1 AAAAAAT
97726166 TATAAAACAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
23 24 0.50
24 7 0.15
25 12 0.25
26 5 0.10
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAAAATAATATATTAAAAATTT
Found at i:97726243 original size:26 final size:26
Alignment explanation
Indices: 97726178--97726261 Score: 73
Period size: 26 Copynumber: 3.1 Consensus size: 26
97726168 TAAAACATAT
*
97726178 AAAAAC-AAACCCTAAACCCTAAAATTCAA
1 AAAAACAAAACCAT-AACCCT--AATT-AA
*
97726207 AAAACCTAAAACCATAACCCTAATTAA
1 AAAAAC-AAAACCATAACCCTAATTAA
*
97726234 AAAAACAAAA-CACTAACCCTAAATAA
1 AAAAACAAAACCA-TAACCCTAATTAA
97726260 AA
1 AA
97726262 CATTACACAT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
25 2 0.04
26 18 0.38
27 7 0.15
28 4 0.08
29 5 0.10
30 6 0.12
31 6 0.12
ACGTcount: A:0.61, C:0.25, G:0.00, T:0.14
Consensus pattern (26 bp):
AAAAACAAAACCATAACCCTAATTAA
Found at i:97727063 original size:29 final size:30
Alignment explanation
Indices: 97727018--97727075 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
97727008 TATTTTATTG
97727018 TTAATTTTGTTATTATTTTAAAGGCATTTA
1 TTAATTTTGTTATTATTTTAAAGGCATTTA
* *
97727048 TTAATTTT-TTATTATTTTAGAGGTATTT
1 TTAATTTTGTTATTATTTTAAAGGCATTT
97727076 TCTTGTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.28, C:0.02, G:0.10, T:0.60
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTA
Found at i:97728314 original size:25 final size:25
Alignment explanation
Indices: 97728285--97728335 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
97728275 CTAATTAAGA
97728285 TTGTTTTTATTTAATAAATGACAAT
1 TTGTTTTTATTTAATAAATGACAAT
97728310 TTGTTTTTATTTAATAAATGACAAT
1 TTGTTTTTATTTAATAAATGACAAT
97728335 T
1 T
97728336 AATAGGTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.53
Consensus pattern (25 bp):
TTGTTTTTATTTAATAAATGACAAT
Found at i:97733078 original size:24 final size:24
Alignment explanation
Indices: 97733049--97733104 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
97733039 TTCTAATTAA
*
97733049 ATTTTATAAATAATTAATATTTAT
1 ATTTTATAAATAATTAAAATTTAT
* *
97733073 -TGTTTAAAAATATTTAAAATTTAT
1 AT-TTTATAAATAATTAAAATTTAT
97733097 ATTTTATA
1 ATTTTATA
97733105 TATTAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.04
24 24 0.92
25 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTTATAAATAATTAAAATTTAT
Found at i:97743252 original size:10 final size:10
Alignment explanation
Indices: 97743237--97743269 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
97743227 GATGAAACAA
97743237 ATTTAAATAG
1 ATTTAAATAG
97743247 ATTTAAATAG
1 ATTTAAATAG
*
97743257 ATTTAAATCG
1 ATTTAAATAG
97743267 ATT
1 ATT
97743270 GTAACTGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.45, C:0.03, G:0.09, T:0.42
Consensus pattern (10 bp):
ATTTAAATAG
Found at i:97743304 original size:20 final size:20
Alignment explanation
Indices: 97743229--97743310 Score: 74
Period size: 20 Copynumber: 4.1 Consensus size: 20
97743219 ATAATAAAGA
* *
97743229 TGAAACAAATTTAAATAGAT
1 TGAAACAGATTTAAATCGAT
* *
97743249 TTAAATAGATTTAAATCGAT
1 TGAAACAGATTTAAATCGAT
* * **
97743269 TGTAACTGATAAAAATCGAT
1 TGAAACAGATTTAAATCGAT
* *
97743289 TGAAAGAGATTTAAATCAAT
1 TGAAACAGATTTAAATCGAT
97743309 TG
1 TG
97743311 TAGCAAATTT
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.48, C:0.06, G:0.13, T:0.33
Consensus pattern (20 bp):
TGAAACAGATTTAAATCGAT
Found at i:97745276 original size:50 final size:50
Alignment explanation
Indices: 97745152--97745400 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
97745142 GATAATAACA
* * ** * *
97745152 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
97745203 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
97745253 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
97745303 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
97745358 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
97745401 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:97745330 original size:100 final size:104
Alignment explanation
Indices: 97745151--97745400 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
97745141 TGATAATAAC
**
97745151 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
97745216 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
97745253 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
97745316 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
97745358 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
97745401 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:97745516 original size:13 final size:13
Alignment explanation
Indices: 97745495--97745526 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
97745485 GCTTGGATCA
*
97745495 TCATCAAATAAAT
1 TCATAAAATAAAT
97745508 TCATAAAATAAAT
1 TCATAAAATAAAT
97745521 TCATAA
1 TCATAA
97745527 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:97745773 original size:30 final size:30
Alignment explanation
Indices: 97745738--97745795 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
97745728 CCTCGACTCT
*
97745738 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
97745768 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
97745796 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:97752867 original size:50 final size:50
Alignment explanation
Indices: 97752743--97752991 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
97752733 GATAATAACA
* * ** * *
97752743 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
97752794 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
97752844 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
97752894 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
97752949 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
97752992 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:97752921 original size:100 final size:104
Alignment explanation
Indices: 97752742--97752991 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
97752732 TGATAATAAC
**
97752742 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
97752807 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
97752844 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
97752907 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
97752949 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
97752992 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:97753107 original size:13 final size:13
Alignment explanation
Indices: 97753086--97753117 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
97753076 GCTTGGATCA
*
97753086 TCATCAAATAAAT
1 TCATAAAATAAAT
97753099 TCATAAAATAAAT
1 TCATAAAATAAAT
97753112 TCATAA
1 TCATAA
97753118 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:97753364 original size:30 final size:30
Alignment explanation
Indices: 97753329--97753386 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
97753319 CCTCGACTCT
*
97753329 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
97753359 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
97753387 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:97755166 original size:49 final size:46
Alignment explanation
Indices: 97755094--97755256 Score: 159
Period size: 47 Copynumber: 3.5 Consensus size: 46
97755084 CAACTGTGGT
* *
97755094 CATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATTGATGC
1 CATAGCCCAACTATGGTCTTACACG-AATCACATATCAC--ACTGATGC
*
97755143 CATAGCCCAACTATGGTCTTACACGAATCACATATCTCACTGATGC
1 CATAGCCCAACTATGGTCTTACACGAATCACATATCACACTGATGC
* * * * * * *
97755189 CATATCCCAGA-TATGGTCTTATACAGTAGCATATATCACACCGATGT
1 CATAGCCCA-ACTATGGTCTTACAC-GAATCACATATCACACTGATGC
*
97755236 CATATCCCAGA-TATGGTCTTA
1 CATAGCCCA-ACTATGGTCTTA
97755257 TACGGAAATC
Statistics
Matches: 101, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
46 27 0.27
47 38 0.38
48 12 0.12
49 24 0.24
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (46 bp):
CATAGCCCAACTATGGTCTTACACGAATCACATATCACACTGATGC
Found at i:97755313 original size:31 final size:31
Alignment explanation
Indices: 97755278--97755426 Score: 210
Period size: 31 Copynumber: 4.8 Consensus size: 31
97755268 CTTGTCACTT
*
97755278 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
97755309 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
97755340 GTAGTC-AGAGTTACCATTTTTCACTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
* *
97755371 GTAGCAGAAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
97755402 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
97755427 TGTCATTTGT
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
31 103 0.99
32 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:97755499 original size:50 final size:51
Alignment explanation
Indices: 97755402--97755530 Score: 152
Period size: 50 Copynumber: 2.5 Consensus size: 51
97755392 CACTAATCAG
* * * * * * *
97755402 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCAAAACTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAAT
* *
97755453 GTAGCCAAAACTATTACTTATCACTT-TCACTTATCCTTGATTAGATAAAT
1 GTAGCCAAAACTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAAT
* *
97755503 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCAAAACTATCACTTATCACTTGT
97755531 TGCCATGGTC
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 43 0.66
51 22 0.34
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (51 bp):
GTAGCCAAAACTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAAT
Found at i:97758681 original size:13 final size:13
Alignment explanation
Indices: 97758663--97758693 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
97758653 GCATCATTTA
97758663 CATTTACAAGCAT
1 CATTTACAAGCAT
97758676 CATTTACAAGCAT
1 CATTTACAAGCAT
97758689 CATTT
1 CATTT
97758694 GCACTAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (13 bp):
CATTTACAAGCAT
Found at i:97763336 original size:15 final size:16
Alignment explanation
Indices: 97763300--97763337 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
97763290 TTTTTTTTCT
*
97763300 TTTTCGTTTAATTAAA
1 TTTTCATTTAATTAAA
*
97763316 TTTTCATTTAA-TAAC
1 TTTTCATTTAATTAAA
97763331 TTTTCAT
1 TTTTCAT
97763338 CTTTTCAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.29, C:0.11, G:0.03, T:0.58
Consensus pattern (16 bp):
TTTTCATTTAATTAAA
Found at i:97764393 original size:18 final size:17
Alignment explanation
Indices: 97764370--97764403 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
97764360 GCCTCATAGC
97764370 CAGATACAAACAGAATAT
1 CAGATA-AAACAGAATAT
*
97764388 CAGATATAACAGAATA
1 CAGATAAAACAGAATA
97764404 ATAGATGCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.18
Consensus pattern (17 bp):
CAGATAAAACAGAATAT
Found at i:97768921 original size:19 final size:18
Alignment explanation
Indices: 97768899--97768941 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
97768889 GGGTTAGAAT
97768899 TTTGGGTTAGGCTTAGGTG
1 TTTGGGTTAGGCTTAGG-G
* * *
97768918 TTTGGATTGGGCTTCGGG
1 TTTGGGTTAGGCTTAGGG
97768936 TTTGGG
1 TTTGGG
97768942 CATATTGTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.07, C:0.07, G:0.44, T:0.42
Consensus pattern (18 bp):
TTTGGGTTAGGCTTAGGG
Found at i:97769513 original size:132 final size:132
Alignment explanation
Indices: 97769271--97770187 Score: 1136
Period size: 132 Copynumber: 6.9 Consensus size: 132
97769261 GTGGCTTAAA
** * * * * * *
97769271 CCTGCTCCACTGTGACTTTAGAGAGACAAGGCTGGTGGCTTAAATCTGTTCCATTGCCGATATAT
1 CCTGCTCCACTGCAACCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACAT
* * * * * * * * *
97769336 GGAGATAAGATTCACCATTTTTTATCTACTCTACTACTGTTTAGGGAGATAAGATCTGTAACCTG
66 GGAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTATCTTG
97769401 AG
131 AG
* * * * * * *
97769403 CTTGTTCCACTACAACCTCAGAGAGATAAGGCTAGTGGCTTAAATTTACTCTATTGTCGATACAT
1 CCTGCTCCACTGCAACCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACAT
* * ** *
97769468 GGAGATAATATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAACTTG
66 GGAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTATCTTG
97769533 AG
131 AG
* * *
97769535 CCTGCTTCACTGCAACCTCAG-GAAGATGAGGCTAGTGGCTTACATCTGCTCCATTGCCGATACA
1 CCTGCTCCACTGCAACCTCAGAG-AGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACA
* * * * *
97769599 TGGAGATAAGATTTGCCGTCTTTGATCTACTCCACTACTGCTTAAGTAGATAAGACCTGTATCTT
65 TGGAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTATCTT
97769664 GAG
130 GAG
* * * *
97769667 CTTGCTCCACTGCAACCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTACCGATATAT
1 CCTGCTCCACTGCAACCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACAT
** * *
97769732 GGAGATAAGATTTGTCGTCTTTGGTCTGCTCCACTACTGCTTAGGGAGATAAGACCTGTATCTTG
66 GGAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTATCTTG
97769797 AG
131 AG
* * * * *
97769799 CCTACTCCATTGCAACCTCA-AGGAGATAAGGCTAGTCGCTTAAATCTGCTCCATTGCTGATATA
1 CCTGCTCCACTGCAACCTCAGA-GAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACA
* * * * *
97769863 TAGAGATAAGATTTACCATCTTTGGTCTGCTCCACTACTGCTTAGGAAGATAATATCTGTATCTT
65 TGGAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTATCTT
97769928 GAG
130 GAG
* * * *
97769931 CCTGCTCTACTGCAACCTCAGGGAGATAAGGCTAGTGGCTTAAATCTACTCCATTGTCGATACAT
1 CCTGCTCCACTGCAACCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACAT
* * * * *
97769996 AGAGATAAGATTTACCGTCGTTGGTCTGCTCCACTACTACTTAGGGAGATAAGACCTGTATCTTG
66 GGAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTATCTTG
97770061 AG
131 AG
* * * * *
97770063 CCTGCTCCATTGCAACTTCAGGGAGATAATGCTAGTGGCTTAAATCTGCTCCATTACCGATACAT
1 CCTGCTCCACTGCAACCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACAT
* * * * *
97770128 GGAGATAAGATTTTCCGTCTTCGATCTACTCCTCTACTGCTTAGGAAGATAAGATCTGTA
66 GGAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
97770188 ATTTTCTTCA
Statistics
Matches: 680, Mismatches: 101, Indels: 8
0.86 0.13 0.01
Matches are distributed among these distances:
131 1 0.00
132 678 1.00
133 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (132 bp):
CCTGCTCCACTGCAACCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACAT
GGAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTATCTTG
AG
Found at i:97776059 original size:132 final size:133
Alignment explanation
Indices: 97775872--97776146 Score: 437
Period size: 132 Copynumber: 2.1 Consensus size: 133
97775862 AGATGGTGAG
** * * *
97775872 TCTTATCTCCATGTATCGGCTATGGAACAGATTTTAGCCACCAGCCTTTTCTCTCTGATGCAGCA
1 TCTTATCTCCATGTATAAGCTATGGAACAGATTTTAGCCACCAGCCTTATCTCTCTCAAGCAGCA
*
97775937 AGAGAGCAGGTTGAAGATAC-AGATCTTATCTTTCTGAGGTAGCAAGGAAGTAGACTGAAAATTA
66 AGAGAGCAGGTTGAAGATACAAG-TCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAAATTA
*
97776001 TAGA
130 CAGA
* *
97776005 TCTTATC-CCATGTATAAGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTCAAGTAGCA
1 TCTTATCTCCATGTATAAGCTATGGAACAGATTTTAGCCACCAGCCTTATCTCTCTCAAGCAGCA
*
97776069 AGAGAGTAGGTTGAAGATACAAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
97776134 AGA
131 AGA
97776137 TCTTATCTCC
1 TCTTATCTCC
97776147 CTAAGCAGTA
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
132 119 0.92
133 11 0.08
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (133 bp):
TCTTATCTCCATGTATAAGCTATGGAACAGATTTTAGCCACCAGCCTTATCTCTCTCAAGCAGCA
AGAGAGCAGGTTGAAGATACAAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
AGA
Found at i:97776141 original size:177 final size:176
Alignment explanation
Indices: 97775954--97776323 Score: 435
Period size: 177 Copynumber: 2.1 Consensus size: 176
97775944 AGGTTGAAGA
** * *
97775954 TACAGATCTTATCTTTCTGAG-GTAGCAAGGAAGTAGA-CTGAAAATTATAGA-TCTTA-TCCCA
1 TACAGATCTTATCTCCCTAAGAGTAG-AA-G-AGTAGATC-GAAAA-TAGAGAGTCTTATTCCCA
* * * *
97776015 TGTATAAGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTCAAGTAGCAAGAGAGTAGGT
61 TATATAAGCTATGGAGCAGATCTTAGCCACCAGCCTTATCTCCCTCAAGCAGCAAGAGAGTAGGT
* * *
97776080 TGAAGATACAAGTCTTATCTTT-CTGAGGTAGCAAGGAAGCAGACTGAAAAT
126 TGAAGATACAAGTATTAT-TTTCCTGAGGTAGCAAAGAAACAGACTGAAAAT
* * * * *
97776131 TACAGATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAAATGGCGAGTCTTATTTCCGTATA
1 TACAGATCTTATCTCCCTAAG-AGTAGAAGAGTAGATCGAAAATAGAGAGTCTTATTCCCATATA
* * * * *
97776196 TCAGCTATGGAGCAGATCTTAGCCACCGGCTTTATCTCCCTGAAGCAGCAGGAGAGTAGGTTGAA
65 TAAGCTATGGAGCAGATCTTAGCCACCAGCCTTATCTCCCTCAAGCAGCAAGAGAGTAGGTTGAA
*
97776261 GATACAAGTATTATTTTCCTGAGGTAGCAAAGAAATAGACTGAAAAT
130 GATACAAGTATTATTTTCCTGAGGTAGCAAAGAAACAGACTGAAAAT
*
97776308 TACAGATATTATCTCC
1 TACAGATCTTATCTCC
97776324 TTAATCAGTA
Statistics
Matches: 164, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
175 3 0.02
176 19 0.12
177 137 0.84
178 1 0.01
179 4 0.02
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (176 bp):
TACAGATCTTATCTCCCTAAGAGTAGAAGAGTAGATCGAAAATAGAGAGTCTTATTCCCATATAT
AAGCTATGGAGCAGATCTTAGCCACCAGCCTTATCTCCCTCAAGCAGCAAGAGAGTAGGTTGAAG
ATACAAGTATTATTTTCCTGAGGTAGCAAAGAAACAGACTGAAAAT
Found at i:97776335 original size:177 final size:177
Alignment explanation
Indices: 97776021--97776361 Score: 513
Period size: 177 Copynumber: 1.9 Consensus size: 177
97776011 CCCATGTATA
* * *
97776021 AGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTCAAGTAGCAAGAGAGTAGGTTGAAGA
1 AGCTATGGAGCAGATCTTAGCCACCAGCCTTATCTCCCTCAAGCAGCAAGAGAGTAGGTTGAAGA
* * * *
97776086 TACAAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCCTAA
66 TACAAGTATTATCTTTCTGAGGTAGCAAAGAAACAGACTGAAAATTACAGATATTATCTCCCTAA
**
97776151 GCAGTAGTAGAGTAGATCGAAAATGGCGAGTCTTATTTCCGTATATC
131 GCAGTAGTAGAACAGATCGAAAATGGCGAGTCTTATTTCCGTATATC
* * * *
97776198 AGCTATGGAGCAGATCTTAGCCACCGGCTTTATCTCCCTGAAGCAGCAGGAGAGTAGGTTGAAGA
1 AGCTATGGAGCAGATCTTAGCCACCAGCCTTATCTCCCTCAAGCAGCAAGAGAGTAGGTTGAAGA
* *
97776263 TACAAGTATTAT-TTTCCTGAGGTAGCAAAGAAATAGACTGAAAATTACAGATATTATCTCCTTA
66 TACAAGTATTATCTTT-CTGAGGTAGCAAAGAAACAGACTGAAAATTACAGATATTATCTCCCTA
* *
97776327 ATCAGTAGTGGAACAGATCGAAAATGGCGAGTCTT
130 AGCAGTAGTAGAACAGATCGAAAATGGCGAGTCTT
97776362 TTCTCTATGT
Statistics
Matches: 146, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
176 3 0.02
177 143 0.98
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (177 bp):
AGCTATGGAGCAGATCTTAGCCACCAGCCTTATCTCCCTCAAGCAGCAAGAGAGTAGGTTGAAGA
TACAAGTATTATCTTTCTGAGGTAGCAAAGAAACAGACTGAAAATTACAGATATTATCTCCCTAA
GCAGTAGTAGAACAGATCGAAAATGGCGAGTCTTATTTCCGTATATC
Found at i:97777654 original size:28 final size:29
Alignment explanation
Indices: 97777600--97777669 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 29
97777590 TGGGCATTTT
* *
97777600 TATT-ATTATTTTAATAATATTATTATTG
1 TATTCATTATTTTTATAATATTACTATTG
*
97777628 TATTCATTATTTTTAT-ATGTTACTATTG
1 TATTCATTATTTTTATAATATTACTATTG
*
97777656 CATTCATT-TTTTTA
1 TATTCATTATTTTTA
97777670 CTTTTTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 6 0.16
28 21 0.57
29 10 0.27
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (29 bp):
TATTCATTATTTTTATAATATTACTATTG
Found at i:97780438 original size:18 final size:17
Alignment explanation
Indices: 97780405--97780443 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
97780395 TTTTATAAAT
97780405 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
97780423 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
97780440 TGTG
1 TGTG
97780444 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:97780696 original size:23 final size:23
Alignment explanation
Indices: 97780669--97780744 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
97780659 AGTGTTATTG
97780669 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
97780692 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
97780715 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
97780738 ATCAGTG
1 ATCAGTG
97780745 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:97785633 original size:31 final size:30
Alignment explanation
Indices: 97785580--97785654 Score: 96
Period size: 31 Copynumber: 2.5 Consensus size: 30
97785570 AGTTTATATC
* *
97785580 TTTATAATTTTTAAAAAATTAAATTAAAAT
1 TTTATTATTTTTAAAAAATTAAAATAAAAT
* *
97785610 TTTATTATTTTTGAAAAAGTTAAAATATAAT
1 TTTATTATTTTT-AAAAAATTAAAATAAAAT
*
97785641 TTTATTATTATTAA
1 TTTATTATTTTTAA
97785655 TTTAAAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 13 0.33
31 26 0.67
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.51
Consensus pattern (30 bp):
TTTATTATTTTTAAAAAATTAAAATAAAAT
Found at i:97788517 original size:30 final size:30
Alignment explanation
Indices: 97788483--97788540 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
97788473 TGTTTTATTG
97788483 TTAATTTTGTTATTATTTTAGAGGCATTCA
1 TTAATTTTGTTATTATTTTAGAGGCATTCA
97788513 TTAATTTTGTTATTATTTTAGAGGCATT
1 TTAATTTTGTTATTATTTTAGAGGCATT
97788541 TACTTGTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.26, C:0.05, G:0.14, T:0.55
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAGAGGCATTCA
Found at i:97792978 original size:32 final size:30
Alignment explanation
Indices: 97792925--97792989 Score: 94
Period size: 32 Copynumber: 2.1 Consensus size: 30
97792915 ACTTATTTTA
*
97792925 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
*
97792955 TTGTTAATTTTTTATTATTATTTTAGAGGCAT
1 TTGTTAA--TTTTATTATTATTTTAAAGGCAT
97792987 TTG
1 TTG
97792990 CTTGATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 7 0.23
32 24 0.77
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGGCAT
Found at i:97803220 original size:24 final size:24
Alignment explanation
Indices: 97803193--97803247 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
97803183 AGTCCAATAG
97803193 CCCAATAACTAACTAAACCC-TAAA
1 CCCAATAACTAACTAAACCCAT-AA
97803217 CCCAATAACTAACTAAACCCATAA
1 CCCAATAACTAACTAAACCCATAA
97803241 CCCAATA
1 CCCAATA
97803248 CCCAAATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 29 0.97
25 1 0.03
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (24 bp):
CCCAATAACTAACTAAACCCATAA
Found at i:97803257 original size:24 final size:24
Alignment explanation
Indices: 97803193--97803258 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
97803183 AGTCCAATAG
* *
97803193 CCCAATAACTAACTAAACCCTAAA
1 CCCAATAACCAAATAAACCCTAAA
* *
97803217 CCCAATAACTAACTAAACCC-ATAA
1 CCCAATAACCAAATAAACCCTA-AA
*
97803241 CCCAATACCCAAATAAAC
1 CCCAATAACCAAATAAAC
97803259 AAATAGGGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 1 0.03
24 37 0.97
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (24 bp):
CCCAATAACCAAATAAACCCTAAA
Found at i:97805534 original size:129 final size:127
Alignment explanation
Indices: 97805365--97805691 Score: 351
Period size: 129 Copynumber: 2.6 Consensus size: 127
97805355 GAAGATTCAT
* * * *
97805365 TAAAACAAAGGTAATAGTT-GATGTTTGGGAACTCGAGGAATCGTGCTCCAACCGTGCTGGGTTT
1 TAAAAC-AAGGCAAT-GTTCGATGTTTGGAAATTCGAGGAATCGTGC-CCTACCGTGCTGGGTTT
*
97805429 CGATTTTTAGTTTG-TCCAAATAATAAAATATTCCTTGA-AATTTCA-TC-CGTACTT-TGAAAA
63 CGATTTTTAGTTTGTTCAAAATAATAAAATATTCCTTGAGAATTTCACTCACGT-CTTCT--AAA
97805489 TTCCC
125 TT--C
* * * * * *
97805494 TAAAACGAAGGCAATGTTCGATGTTTGGAAATTTGGGGAATCGTGCCCTATCGTGCTGGGCTGCA
1 TAAAAC-AAGGCAATGTTCGATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGGTTTCG
* * ** * *
97805559 ATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTCTAAATTC
65 ATTTTTAGTTTGTTCAAAATAATAAAATATTCCTTGAGAATTTCACTCACGTCTTCTAAATTC
* * *
97805622 TAAAACAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTACCCTACTGTGCTGGGTTTCGA
1 TAAAACAAGGCAATGTTCGATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGGTTTCGA
97805687 TTTTT
66 TTTTT
97805692 TATTGGACTA
Statistics
Matches: 164, Mismatches: 28, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
127 54 0.33
128 34 0.21
129 56 0.34
130 12 0.07
131 5 0.03
132 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (127 bp):
TAAAACAAGGCAATGTTCGATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGGTTTCGA
TTTTTAGTTTGTTCAAAATAATAAAATATTCCTTGAGAATTTCACTCACGTCTTCTAAATTC
Found at i:97805661 original size:127 final size:125
Alignment explanation
Indices: 97805385--97805680 Score: 312
Period size: 127 Copynumber: 2.3 Consensus size: 125
97805375 GTAATAGTTG
* * * * * * * *
97805385 ATGTTTGGGAACTCGAGGAATCGTGCTCCAACCGTGCTGGGTTTCGATTTTTAGTTTGTCCAAAT
1 ATGTTTGGAAATTCGAGGAATCGTGC-CCTA-CGTGCTGGGCTGCAATTTCTAGTTTGTCAAAAT
*
97805450 AATAAAATATTCCTTGAAATTTCATCCGTACTTTGAAAATTCCCTAAAACGAAGGCAATGTTCG
64 AATAAAATATTCCTTGAAATTTCATCCGTACTTT-AAAATT-CCTAAAACGAAGGCAATGTTCA
* * *
97805514 ATGTTTGGAAATTTGGGGAATCGTGCCCTATCGTGCTGGGCTGCAATTTCTCGTTTGTTCAAAAT
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTA-CGTGCTGGGCTGCAATTTCTAGTTTG-TCAAAAT
** * *
97805579 AATCGAATATTCCTTTAGAATTTCACTCATGT-CTTCT-AAATT-CTAAAAC-AAGGCAATGTTC
64 AATAAAATATTCCTTGA-AATTTCA-TC-CGTACTT-TAAAATTCCTAAAACGAAGGCAATGTTC
97805640 A
125 A
*
97805641 ATGTTTGGAAATTCGAGGAATCGTACCCTACTGTGCTGGG
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTAC-GTGCTGGG
97805681 TTTCGATTTT
Statistics
Matches: 141, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
126 1 0.01
127 47 0.33
128 31 0.22
129 42 0.30
130 12 0.09
131 5 0.04
132 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (125 bp):
ATGTTTGGAAATTCGAGGAATCGTGCCCTACGTGCTGGGCTGCAATTTCTAGTTTGTCAAAATAA
TAAAATATTCCTTGAAATTTCATCCGTACTTTAAAATTCCTAAAACGAAGGCAATGTTCA
Found at i:97806797 original size:20 final size:20
Alignment explanation
Indices: 97806772--97806811 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
97806762 AATTCAGGTC
*
97806772 GACATCGTGACGTGAAGGAG
1 GACATCGCGACGTGAAGGAG
*
97806792 GACATCGCGACTTGAAGGAG
1 GACATCGCGACGTGAAGGAG
97806812 TGCCTCGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.17, G:0.38, T:0.15
Consensus pattern (20 bp):
GACATCGCGACGTGAAGGAG
Found at i:97808017 original size:27 final size:27
Alignment explanation
Indices: 97807964--97808017 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
97807954 TGGATTCCAA
* * *
97807964 TATAATCAGTAATAAACTACGTGCAAT
1 TATAATCAATAATAAACTACATACAAT
97807991 TATAATCAATAATAAACTACATACAAT
1 TATAATCAATAATAAACTACATACAAT
97808018 CACATACTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.50, C:0.15, G:0.06, T:0.30
Consensus pattern (27 bp):
TATAATCAATAATAAACTACATACAAT
Found at i:97811742 original size:125 final size:125
Alignment explanation
Indices: 97811520--97811831 Score: 590
Period size: 125 Copynumber: 2.5 Consensus size: 125
97811510 AAAGATGGGC
*
97811520 AATGACGATTTAGCATAGCACCCTTGGATTAGATTTGAAAGTTGGGAGTACTGGTTTCTTATTGC
1 AATGAAGATTTAGCATAGCACCCTTGGATTAGATTTGAAAGTTGGGAGTACTGGTTTCTTATTGC
97811585 CACACCTAAAGCATTCAAGATTTTTAACCACTGGATACTTATGGTGATGATTTCCAATAA
66 CACACCTAAAGCATTCAAGATTTTTAACCACTGGATACTTATGGTGATGATTTCCAATAA
97811645 AATGAAGATTTAGCATAGCACCCTTGGATTAGATTTGAAAGTTGGGAGTACTGGTTTCTTATTGC
1 AATGAAGATTTAGCATAGCACCCTTGGATTAGATTTGAAAGTTGGGAGTACTGGTTTCTTATTGC
97811710 CACACCTAAAGCATTCAAGATTTTTAACCACTGGATACTTATGGTGATGATTTCCAATAA
66 CACACCTAAAGCATTCAAGATTTTTAACCACTGGATACTTATGGTGATGATTTCCAATAA
* *
97811770 AATGAAGATTTAGCATAGCACCCTTGGATTAGATTTGAAAGTT-GGAATACTGATTTCTTATT
1 AATGAAGATTTAGCATAGCACCCTTGGATTAGATTTGAAAGTTGGGAGTACTGGTTTCTTATT
97811832 TCGTGTCAAA
Statistics
Matches: 184, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
124 17 0.09
125 167 0.91
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (125 bp):
AATGAAGATTTAGCATAGCACCCTTGGATTAGATTTGAAAGTTGGGAGTACTGGTTTCTTATTGC
CACACCTAAAGCATTCAAGATTTTTAACCACTGGATACTTATGGTGATGATTTCCAATAA
Found at i:97823124 original size:18 final size:18
Alignment explanation
Indices: 97823101--97823139 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
97823091 TATTAATACA
*
97823101 ATTATTGATATA-ACATAT
1 ATTATTG-TATACACAAAT
97823119 ATTATTGTATACACAAAT
1 ATTATTGTATACACAAAT
97823137 ATT
1 ATT
97823140 CATATTTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.44
Consensus pattern (18 bp):
ATTATTGTATACACAAAT
Found at i:97828561 original size:3 final size:3
Alignment explanation
Indices: 97828553--97828587 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
97828543 CAAGACAGTA
97828553 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
97828588 ACCCAAACCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:97829442 original size:9 final size:10
Alignment explanation
Indices: 97829409--97829458 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
97829399 TTGTCTACCG
97829409 TTTTT-ATAA
1 TTTTTAATAA
*
97829418 TATTTTAGTAA
1 T-TTTTAATAA
97829429 TTTTTAATAA
1 TTTTTAATAA
97829439 TTTTTAA-AA
1 TTTTTAATAA
97829448 TTTTTTAATAA
1 -TTTTTAATAA
97829459 AAAGTTCTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 3 0.09
10 26 0.74
11 6 0.17
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:97830169 original size:9 final size:9
Alignment explanation
Indices: 97830087--97830274 Score: 67
Period size: 9 Copynumber: 19.6 Consensus size: 9
97830077 TTTTAATTAT
97830087 TTTTATATAA
1 TTTTATA-AA
97830097 TTTCTA-AAA
1 TTT-TATAAA
97830106 TTTTATAATA
1 TTTTATAA-A
* *
97830116 TTAATATGATA
1 TT-TTAT-AAA
*
97830127 TTTTCATATA
1 TTTT-ATAAA
*
97830137 TTTCATAACA
1 TTTTATAA-A
*
97830147 TATGTATAATA
1 T-TTTATAA-A
97830158 TTTTATAAA
1 TTTTATAAA
*
97830167 TTTAATATATA
1 TTT--TATAAA
*
97830178 TTTT-TTAA
1 TTTTATAAA
97830186 TTTT-TAAA
1 TTTTATAAA
* *
97830194 ATTTATGATA
1 TTTTAT-AAA
*
97830204 TTTAATAAA
1 TTTTATAAA
*
97830213 TTTTATAGA
1 TTTTATAAA
* *
97830222 TTTTCTATA
1 TTTTATAAA
* *
97830231 TTTTCTTAAT
1 TTTT-ATAAA
*
97830241 TTTTAAAAA
1 TTTTATAAA
97830250 TTTTATAATA
1 TTTTATAA-A
*
97830260 TTTTAATAAT
1 TTTT-ATAAA
97830270 TTTTA
1 TTTTA
97830275 AGCTTAAATA
Statistics
Matches: 133, Mismatches: 30, Indels: 31
0.69 0.15 0.16
Matches are distributed among these distances:
8 14 0.11
9 46 0.35
10 43 0.32
11 29 0.22
12 1 0.01
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (9 bp):
TTTTATAAA
Found at i:97830188 original size:28 final size:28
Alignment explanation
Indices: 97830157--97830272 Score: 89
Period size: 28 Copynumber: 4.2 Consensus size: 28
97830147 TATGTATAAT
97830157 ATTTTATAAATTTAATATATATTTT-TTA
1 ATTTTATAAATTT-ATATATATTTTATTA
* * *
97830185 ATTTT-TAAAATTTAT-GATATTTAATAA
1 ATTTTAT-AAATTTATATATATTTTATTA
* * *
97830212 ATTTTATAGATTT-TCTATATTTTCTTA
1 ATTTTATAAATTTATATATATTTTATTA
* *
97830239 ATTTTTAAAAATTT-TATAATATTTTAATA
1 A-TTTTATAAATTTATAT-ATATTTTATTA
97830268 ATTTT
1 ATTTT
97830273 TAAGCTTAAA
Statistics
Matches: 69, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
26 7 0.10
27 24 0.35
28 28 0.41
29 10 0.14
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (28 bp):
ATTTTATAAATTTATATATATTTTATTA
Found at i:97830217 original size:19 final size:19
Alignment explanation
Indices: 97830152--97830274 Score: 71
Period size: 19 Copynumber: 6.5 Consensus size: 19
97830142 TAACATATGT
97830152 ATAATATTTTATAA-ATTTA
1 ATAA-ATTTTATAATATTTA
*
97830171 ATATATATTTTTTAAT-TTT-
1 ATA-A-ATTTTATAATATTTA
* *
97830190 -TAAAATTTATGATATTTA
1 ATAAATTTTATAATATTTA
97830208 ATAAATTTTATAGAT-TTT-
1 ATAAATTTTATA-ATATTTA
* * * *
97830226 CTATATTTTCTTAATTTTTA
1 ATAAATTTT-ATAATATTTA
97830246 A-AAATTTTATAATATTTTA
1 ATAAATTTTATAATA-TTTA
*
97830265 ATAATTTTTA
1 ATAAATTTTA
97830275 AGCTTAAATA
Statistics
Matches: 79, Mismatches: 14, Indels: 21
0.69 0.12 0.18
Matches are distributed among these distances:
16 7 0.09
17 4 0.05
18 15 0.19
19 31 0.39
20 22 0.28
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
ATAAATTTTATAATATTTA
Found at i:97832188 original size:14 final size:14
Alignment explanation
Indices: 97832169--97832195 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97832159 CTGATTCTCC
97832169 TTCTTTTCTTTTTT
1 TTCTTTTCTTTTTT
97832183 TTCTTTTCTTTTT
1 TTCTTTTCTTTTT
97832196 CCTTTTATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTCTTTTCTTTTTT
Found at i:97835655 original size:40 final size:40
Alignment explanation
Indices: 97835570--97835663 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 40
97835560 ATCTCAGTAT
* *
97835570 CGCACACTTAGTGCCACAAATAGCCGAAGCTATTCCAATT
1 CGCACACTAAGTGCCACAAATAGCCGAAGCTATTCCAATA
* * * * *
97835610 TGCACACTAAGTGCTATATATAGCCGAAGCTATCTCGAA-A
1 CGCACACTAAGTGCCACAAATAGCCGAAGCTAT-TCCAATA
*
97835650 CGCACACCAAGTGC
1 CGCACACTAAGTGC
97835664 AAACATAGCT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
40 40 0.91
41 4 0.09
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (40 bp):
CGCACACTAAGTGCCACAAATAGCCGAAGCTATTCCAATA
Found at i:97841395 original size:21 final size:23
Alignment explanation
Indices: 97841355--97841400 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
97841345 ATAGGAGGTG
*
97841355 TTTAAATAACAAAAATAATTTTA
1 TTTAAATAACAAAAATAATTGTA
*
97841378 TTTAAATGA-AAAAA-AATTGTA
1 TTTAAATAACAAAAATAATTGTA
97841399 TT
1 TT
97841401 ACTGATATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.38
22 5 0.24
23 8 0.38
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.39
Consensus pattern (23 bp):
TTTAAATAACAAAAATAATTGTA
Found at i:97849071 original size:40 final size:40
Alignment explanation
Indices: 97849025--97849209 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
97849015 CTTGCACAAG
* * *
97849025 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
97849065 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
97849105 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACT-AGCACAAAT
* * * *
97849145 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
97849186 GCCTTCGGGACTTAGCCCGAATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
97849210 CATTCGAATA
Statistics
Matches: 120, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 91 0.76
41 28 0.23
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:97849120 original size:80 final size:80
Alignment explanation
Indices: 97848989--97849209 Score: 220
Period size: 80 Copynumber: 2.8 Consensus size: 80
97848979 CTCAAGAAAT
* * * * * *
97848989 CTTCGGGATTTAGCCGGATATAA-CTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCGGATATAATCAACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-
*
97849052 C-ACT-AGCATAAATGC
65 CAACTCA-CACAAATGC
* *
97849067 CTTCGGGACTTAGCCCGGATATAATC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAG-CCGGATATAATCAACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
*
97849131 CAACTCACACGAATGC
65 CAACTCACACAAATGC
* * * * *
97849147 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGAATAT
1 CTTCGGGA-CTTAG-CCGGATATAATCAACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
97849210 CATTCGAATA
Statistics
Matches: 121, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
78 12 0.10
79 20 0.17
80 56 0.46
81 33 0.27
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCGGATATAATCAACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
AACTCACACAAATGC
Found at i:97856299 original size:40 final size:40
Alignment explanation
Indices: 97856217--97856437 Score: 211
Period size: 40 Copynumber: 5.5 Consensus size: 40
97856207 CTCAAGAAAT
* *
97856217 CTTCGGGAT-TTAG-CCGGATATAA-CTACTTGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAATC-ACTAGCACAAATGC
* ** *
97856255 CTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
* *
97856295 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
*
97856335 CTTCGGGTCTTAGCCCGGATATAA-CAACTCA-CACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAATC-ACT-AGCACAAATGC
* * * * *
97856375 CTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAATCA-CTAGCACAAATGC
* *
97856416 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGTCTTAGCCCGGATAT
97856438 CATTCGAATA
Statistics
Matches: 148, Mismatches: 26, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 14 0.09
40 94 0.64
41 28 0.19
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:97863879 original size:17 final size:17
Alignment explanation
Indices: 97863857--97863891 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
97863847 TAGGCTAATT
97863857 ACCATTTTACCCCTGAC
1 ACCATTTTACCCCTGAC
97863874 ACCATTTTACCCCTGAC
1 ACCATTTTACCCCTGAC
97863891 A
1 A
97863892 TTTACAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.40, G:0.06, T:0.29
Consensus pattern (17 bp):
ACCATTTTACCCCTGAC
Found at i:97868044 original size:6 final size:6
Alignment explanation
Indices: 97868024--97868067 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
97868014 GGAAAACATA
* *
97868024 TTTC-T TTTC-T TTTCTT TTTCTT TTTCAT TTTCAT TTTCAT TTTC
1 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTC
97868068 CATGAATAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
5 9 0.24
6 28 0.76
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTCAT
Found at i:97871140 original size:7 final size:7
Alignment explanation
Indices: 97871128--97871154 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
97871118 TTGTTTTAAA
97871128 TTATTTT
1 TTATTTT
97871135 TTATTTT
1 TTATTTT
97871142 TTATTTT
1 TTATTTT
97871149 TTATTT
1 TTATTT
97871155 ATTTTCGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTATTTT
Found at i:97878050 original size:21 final size:21
Alignment explanation
Indices: 97878024--97878064 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97878014 ATCTGCTCAA
* *
97878024 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
97878045 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
97878065 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:97892318 original size:12 final size:12
Alignment explanation
Indices: 97892301--97892326 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97892291 TTGTTAACAC
97892301 TGTTAAATTTTT
1 TGTTAAATTTTT
97892313 TGTTAAATTTTT
1 TGTTAAATTTTT
97892325 TG
1 TG
97892327 GTGTGACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (12 bp):
TGTTAAATTTTT
Found at i:97896009 original size:7 final size:7
Alignment explanation
Indices: 97895997--97896021 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
97895987 TCAGTCTTAA
97895997 ACTTTCG
1 ACTTTCG
97896004 ACTTTCG
1 ACTTTCG
97896011 ACTTTCG
1 ACTTTCG
97896018 ACTT
1 ACTT
97896022 CCGGTTCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (7 bp):
ACTTTCG
Found at i:97897942 original size:3 final size:3
Alignment explanation
Indices: 97897934--97897958 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
97897924 ATATTTCATA
97897934 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
97897959 TATATGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:97907454 original size:25 final size:25
Alignment explanation
Indices: 97907401--97907455 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
97907391 ATATAATTTT
* *
97907401 TTTTATAAATTCATTCAAAATTATT
1 TTTTATAAATTCATTAAAAATTATA
97907426 TTTTATAAATTCA-TAAAAATATATA
1 TTTTATAAATTCATTAAAAAT-TATA
97907451 TTTTA
1 TTTTA
97907456 AAAAAATAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTTATAAATTCATTAAAAATTATA
Found at i:97909521 original size:19 final size:19
Alignment explanation
Indices: 97909497--97909540 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
97909487 GGGACTAAAT
* *
97909497 TGAAAAGTTGTAAAATTTA
1 TGAAAAATTCTAAAATTTA
*
97909516 TGAAAAAATTCTAAATTTTA
1 TG-AAAAATTCTAAAATTTA
97909536 TGAAA
1 TGAAA
97909541 TACATGGGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.36
Consensus pattern (19 bp):
TGAAAAATTCTAAAATTTA
Found at i:97909699 original size:10 final size:11
Alignment explanation
Indices: 97909684--97909712 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
97909674 TCCTAAAGTG
97909684 TGAATTGAAT-
1 TGAATTGAATA
97909694 TGAATTGAATA
1 TGAATTGAATA
97909705 TGAATTGA
1 TGAATTGA
97909713 TGTTAAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (11 bp):
TGAATTGAATA
Found at i:97910384 original size:24 final size:24
Alignment explanation
Indices: 97910357--97910414 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
97910347 ATTAGCTCGC
97910357 ATGAGCTTCCTGAATATGGCTGTT
1 ATGAGCTTCCTGAATATGGCTGTT
97910381 ATGAGCTTCCTGAATATGGCTGTT
1 ATGAGCTTCCTGAATATGGCTGTT
97910405 ATGAGCTTCC
1 ATGAGCTTCC
97910415 CGTTATACAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (24 bp):
ATGAGCTTCCTGAATATGGCTGTT
Found at i:97910474 original size:25 final size:25
Alignment explanation
Indices: 97910357--97910477 Score: 79
Period size: 24 Copynumber: 4.9 Consensus size: 25
97910347 ATTAGCTCGC
* **
97910357 ATGAGCTTCCTG-AATATGGCTGTT
1 ATGAGCTTCCTGTTATATGGCTCAT
* **
97910381 ATGAGCTTCCTG-AATATGGCTGTT
1 ATGAGCTTCCTGTTATATGGCTCAT
* **
97910405 ATGAGCTTCCCGTTATACAGCTCGA-
1 ATGAGCTTCCTGTTATATGGCTC-AT
* * * *
97910430 ATAAGATTTCC-ATTACATGGCTCAT
1 ATGAG-CTTCCTGTTATATGGCTCAT
97910455 ATGAGCTTCCTGTTATATGGCTC
1 ATGAGCTTCCTGTTATATGGCTC
97910478 GAGAGAGGGC
Statistics
Matches: 76, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
24 40 0.53
25 32 0.42
26 4 0.05
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (25 bp):
ATGAGCTTCCTGTTATATGGCTCAT
Found at i:97913025 original size:25 final size:25
Alignment explanation
Indices: 97912970--97913051 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
97912960 TCACTACGAC
** * *
97912970 GGCTTTCCAAATGATATGCCAGATA
1 GGCTTTCCAAATGATACACCACAAA
* *
97912995 GACTTTCCAAATGATACACCTCAAA
1 GGCTTTCCAAATGATACACCACAAA
* * *
97913020 GGCTTTTCAAATGATACGCCATAAA
1 GGCTTTCCAAATGATACACCACAAA
*
97913045 GCCTTTC
1 GGCTTTC
97913052 TAGGTAATCC
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (25 bp):
GGCTTTCCAAATGATACACCACAAA
Found at i:97915486 original size:23 final size:23
Alignment explanation
Indices: 97915459--97915508 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
97915449 ATCTCTAACC
97915459 TTTT-CTTTAT-TATATTTTTCTCT
1 TTTTCCTTTATAT-TATTTTTCT-T
*
97915482 TTTTCCTTTATATTCTTTTTCTT
1 TTTTCCTTTATATTATTTTTCTT
97915505 TTTT
1 TTTT
97915509 AGCTTAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 9 0.38
24 14 0.58
25 1 0.04
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTCCTTTATATTATTTTTCTT
Found at i:97923615 original size:25 final size:25
Alignment explanation
Indices: 97923582--97923639 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
97923572 AATAAGAAAC
*
97923582 AATTATAACGATTAAACCATTTATAT
1 AATT-TAACCATTAAACCATTTATAT
*
97923608 AATTTAACCATTAAACCATTTATCT
1 AATTTAACCATTAAACCATTTATAT
97923633 AATTTAA
1 AATTTAA
97923640 TCATGCATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 26 0.87
26 4 0.13
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.40
Consensus pattern (25 bp):
AATTTAACCATTAAACCATTTATAT
Found at i:97928680 original size:48 final size:47
Alignment explanation
Indices: 97928595--97928740 Score: 157
Period size: 48 Copynumber: 3.0 Consensus size: 47
97928585 GGTTATGTGT
** *
97928595 GATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGATATGA
1 GATCCCATAAAAGACCATG-CTGGGACATGGCATTGGCATCGATATGA
** *
97928643 GATCTGATAAAAGACCATGCTAGGGACATGGCATTGGCATCGATATGT
1 GATCCCATAAAAGACCATGCT-GGGACATGGCATTGGCATCGATATGA
** * * * *
97928691 GATCCCATGTAAGACCATATCTGAGATATGGCATTGGCATCAATATGA
1 GATCCCATAAAAGACCAT-GCTGGGACATGGCATTGGCATCGATATGA
97928739 GA
1 GA
97928741 CATCGTGTAG
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
47 2 0.02
48 77 0.95
49 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (47 bp):
GATCCCATAAAAGACCATGCTGGGACATGGCATTGGCATCGATATGA
Found at i:97928756 original size:96 final size:90
Alignment explanation
Indices: 97928592--97928822 Score: 270
Period size: 96 Copynumber: 2.5 Consensus size: 90
97928582 TAAGGTTATG
* * * *
97928592 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGATATGAGATCTGATAAAAGA
1 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAATATGAGATCTGAT-AAAGA
* *
97928657 CCAT-GCTAGGGACATGGCATTGGCATCGATA
65 CCATAGCT-GGG-C-T---ATCGGCATCAATA
* *
97928688 TGTGATCCCATGTAAGACCATATCTGAGATATGGCATTGGCATCAATATGAGACATCGTG-T-AG
1 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAATATGAG--ATC-TGATAAA
*
97928751 GACCATAGCTGGGCTATCGGCTTCAATA
63 GACCATAGCTGGGCTATCGGCATCAATA
97928779 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
97928823 TTACTATGTT
Statistics
Matches: 121, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
91 53 0.44
94 1 0.01
95 1 0.01
96 57 0.47
97 3 0.02
98 4 0.03
99 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (90 bp):
TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAATATGAGATCTGATAAAGAC
CATAGCTGGGCTATCGGCATCAATA
Found at i:97940014 original size:14 final size:14
Alignment explanation
Indices: 97939995--97940024 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
97939985 AGCTCTTAAT
*
97939995 CTGCTCTACTGCAA
1 CTGCTCCACTGCAA
97940009 CTGCTCCACTGCAA
1 CTGCTCCACTGCAA
97940023 CT
1 CT
97940025 TTAAGGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.13, T:0.27
Consensus pattern (14 bp):
CTGCTCCACTGCAA
Found at i:97940361 original size:44 final size:46
Alignment explanation
Indices: 97940293--97940410 Score: 141
Period size: 46 Copynumber: 2.6 Consensus size: 46
97940283 TCTTCAGTCT
* *
97940293 GCTCCACTGCAACTTCAGGGAGATAAGACTTGT-TA-CTTTAACCC
1 GCTCTACTGCAACTTCAGAGAGATAAGACTTGTGTATCTTTAACCC
* ** * * *
97940337 GCTCTACTGCAACTTTAGAGAGATAAGGTTTGTGTATTTTTATCCT
1 GCTCTACTGCAACTTCAGAGAGATAAGACTTGTGTATCTTTAACCC
*
97940383 ACTCTACTGCAACTTCAGAGAGATAAGA
1 GCTCTACTGCAACTTCAGAGAGATAAGA
97940411 ATTTTATGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 28 0.46
45 2 0.03
46 31 0.51
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (46 bp):
GCTCTACTGCAACTTCAGAGAGATAAGACTTGTGTATCTTTAACCC
Found at i:97940366 original size:147 final size:147
Alignment explanation
Indices: 97940099--97940370 Score: 463
Period size: 147 Copynumber: 1.9 Consensus size: 147
97940089 TGGTTTCGAT
* *
97940099 CTGCTCCACTGCAACTTCAAGGAGATGAGATCTGCTATCTTCAGTCTGTTCCACTACAACTTCAG
1 CTGCTCCACTGCAACTTCAAGGAGATAAGATCTGCTATCTTCAGTCTGCTCCACTACAACTTCAG
*
97940164 GGAGATAAGACTTGTTACTTCAACCCGCTCTACTGTAACTTCAAAGAGATAAGGTTTGTGGCTTC
66 GGAGATAAGACTTGTTACTTCAACCCGCTCTACTGCAACTTCAAAGAGATAAGGTTTGTGGCTTC
97940229 GATCTGGTCCACTGCAA
131 GATCTGGTCCACTGCAA
* * *
97940246 CTGCTCCACTGTAACTTCAGGGAGATAAGATCTGCTATCTTCAGTCTGCTCCACTGCAACTTCAG
1 CTGCTCCACTGCAACTTCAAGGAGATAAGATCTGCTATCTTCAGTCTGCTCCACTACAACTTCAG
* * *
97940311 GGAGATAAGACTTGTTACTTTAACCCGCTCTACTGCAACTTTAGAGAGATAAGGTTTGTG
66 GGAGATAAGACTTGTTACTTCAACCCGCTCTACTGCAACTTCAAAGAGATAAGGTTTGTG
97940371 TATTTTTATC
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
147 116 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (147 bp):
CTGCTCCACTGCAACTTCAAGGAGATAAGATCTGCTATCTTCAGTCTGCTCCACTACAACTTCAG
GGAGATAAGACTTGTTACTTCAACCCGCTCTACTGCAACTTCAAAGAGATAAGGTTTGTGGCTTC
GATCTGGTCCACTGCAA
Found at i:97960864 original size:14 final size:14
Alignment explanation
Indices: 97960845--97960890 Score: 65
Period size: 14 Copynumber: 3.1 Consensus size: 14
97960835 AAAACGGTTG
97960845 TAACAGTTAGTAGT
1 TAACAGTTAGTAGT
97960859 TAACAGATTGAGTAGT
1 TAACAG-TT-AGTAGT
*
97960875 TAGCAGTTAGTAGT
1 TAACAGTTAGTAGT
97960889 TA
1 TA
97960891 GTTGATGTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 14 0.48
15 4 0.14
16 11 0.38
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.35
Consensus pattern (14 bp):
TAACAGTTAGTAGT
Found at i:97960900 original size:27 final size:28
Alignment explanation
Indices: 97960848--97960904 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 28
97960838 ACGGTTGTAA
97960848 CAGTTAGTAGTTAACAGATTGAGTAGTTAG
1 CAGTTAGTAGTT-A-AGATTGAGTAGTTAG
97960878 CAGTTAGTAGTT-AG-TTGATGTAGTTAG
1 CAGTTAGTAGTTAAGATTGA-GTAGTTAG
97960905 TCAACGATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
26 4 0.15
27 10 0.38
30 12 0.46
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.37
Consensus pattern (28 bp):
CAGTTAGTAGTTAAGATTGAGTAGTTAG
Found at i:97962880 original size:21 final size:21
Alignment explanation
Indices: 97962841--97962881 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
97962831 CACTTGACAT
* *
97962841 AGGGGCACACACTCATGTGAA
1 AGGGACACACACCCATGTGAA
*
97962862 AGGGACACACACCCGTGTGA
1 AGGGACACACACCCATGTGA
97962882 CCAACTTAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.27, G:0.29, T:0.12
Consensus pattern (21 bp):
AGGGACACACACCCATGTGAA
Found at i:97963818 original size:47 final size:45
Alignment explanation
Indices: 97963744--97964013 Score: 188
Period size: 47 Copynumber: 5.8 Consensus size: 45
97963734 GGTAAGGTGC
* * *
97963744 CGATGCTATGTCCTAGACACAGGCTTACACTGGCTCATATCTCAAGT
1 CGATGC-ATGTCCCAGACA-TGTCTTACACTGGCTCATATCTCAAGT
* * * * *
97963791 TGATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCAT-ATCTC-AAGT
* * ** * *
97963839 CGATGCATGTCCCAGACATGTCTTACACTGGATTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCATATCTC-AAGT
* * * *
97963885 CGATGCATGTCCCAGACATGTCTTGCACTAGCCCTTATCTCAA-T
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCATATCTCAAGT
* *
97963929 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAGTGT--GGT
1 --CGATG-CATGTCCCAGACAT-GTCTTACACTGG--CTCATA-TCTCAAGT
* *
97963979 TGATGCATGTCCCAGACATGTCTTACACTAGCTCA
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCA
97964014 CACACGAATG
Statistics
Matches: 176, Mismatches: 34, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
44 4 0.02
45 1 0.01
46 70 0.40
47 73 0.41
48 21 0.12
50 5 0.03
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCATATCTCAAGT
Found at i:97963880 original size:46 final size:46
Alignment explanation
Indices: 97963792--97964007 Score: 176
Period size: 46 Copynumber: 4.6 Consensus size: 46
97963782 ATCTCAAGTT
* *
97963792 GATGCCATGTCCCAAACATGGTCTTACACT-GACTATCATCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGATTA-CATCTCGTAGCC
*
97963840 GATGCATGTCCCAGACATGTCTTACACTGGATTACGTCTCG-AGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGATTACATCTCGTA-GCC
* ** *
97963886 GATGCATGTCCCAGACATGTCTTGCACTAGCCCTT--ATCTCAATA-CC
1 GATGCATGTCCCAGACATGTCTTACACT-G-GATTACATCTC-GTAGCC
* * * **
97963932 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAGT-GTGGTT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGAT-TACAT-CTCGTAGCC
97963980 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
97964008 AGCTCACACA
Statistics
Matches: 141, Mismatches: 15, Indels: 26
0.77 0.08 0.14
Matches are distributed among these distances:
45 1 0.01
46 68 0.48
47 49 0.35
48 22 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGATTACATCTCGTAGCC
Found at i:97963904 original size:93 final size:95
Alignment explanation
Indices: 97963792--97963963 Score: 230
Period size: 93 Copynumber: 1.8 Consensus size: 95
97963782 ATCTCAAGTT
*
97963792 GATGCCATGTCCCAAACATGGTCTTACACT-G-ACTATCATCTC-GTAGCCGATG-CATGTCCCA
1 GATGCCATGTCCCAAACAT-GTCTTACACTAGCACT-T-ATCTCAATA-CCGATGCCATGTCCCA
97963853 GACAT-GTCTTACACTGGATTACGTCTCGAGGCC
62 GACATGGTCTTACACTGGATTACGTCTCGAGGCC
* * *
97963886 GATG-CATGTCCCAGACATGTCTTGCACTAGCCCTTATCTCAATACCGATGCCATGTCCCAGACA
1 GATGCCATGTCCCAAACATGTCTTACACTAGCACTTATCTCAATACCGATGCCATGTCCCAGACA
97963950 TGGTCTTACACTGG
66 TGGTCTTACACTGG
97963964 CTCTCATAGT
Statistics
Matches: 69, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
92 20 0.29
93 31 0.45
94 18 0.26
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (95 bp):
GATGCCATGTCCCAAACATGTCTTACACTAGCACTTATCTCAATACCGATGCCATGTCCCAGACA
TGGTCTTACACTGGATTACGTCTCGAGGCC
Found at i:97968932 original size:7 final size:7
Alignment explanation
Indices: 97968916--97968946 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
97968906 CAGATAAAAT
97968916 TTTAGGG
1 TTTAGGG
*
97968923 TTTAGAG
1 TTTAGGG
97968930 TTTAGGG
1 TTTAGGG
97968937 TTTAGGG
1 TTTAGGG
97968944 TTT
1 TTT
97968947 TATCCAGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.16, C:0.00, G:0.35, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:97969136 original size:26 final size:24
Alignment explanation
Indices: 97969097--97969156 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
97969087 TTATTTCATT
* * *
97969097 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
97969121 TAAATTAAATATATTTAAAAACATAA
1 -AAA-TAAATATATTTAAAAACATAA
97969147 AAATAAATAT
1 AAATAAATAT
97969157 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.23
25 6 0.19
26 18 0.58
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:97969168 original size:22 final size:22
Alignment explanation
Indices: 97969127--97969185 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
97969117 ATAATAAATT
* *
97969127 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
97969147 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
97969169 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
97969186 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:97969240 original size:22 final size:21
Alignment explanation
Indices: 97969211--97969275 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
97969201 ACAAATAAAC
* *
97969211 AATAAAATAAAAAATAGTTAT
1 AATAAAATAAAAAATAATTAA
* **
97969232 ATTAAAAATTTAAAATAATTAA
1 AAT-AAAATAAAAAATAATTAA
97969254 AATAAAATAAAAAATATATTAA
1 AATAAAATAAAAAATA-ATTAA
97969276 TATATAATTC
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
21 13 0.38
22 21 0.62
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (21 bp):
AATAAAATAAAAAATAATTAA
Found at i:97970260 original size:12 final size:13
Alignment explanation
Indices: 97970243--97970271 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
97970233 AAATGTATAA
97970243 TAATTTTAAT-TT
1 TAATTTTAATATT
97970255 TAATTTTAATATT
1 TAATTTTAATATT
97970268 TAAT
1 TAAT
97970272 ATTTTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TAATTTTAATATT
Found at i:97970888 original size:14 final size:14
Alignment explanation
Indices: 97970871--97970901 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
97970861 GGTAAAATAT
97970871 TTTCCGGAAAATGA
1 TTTCCGGAAAATGA
*
97970885 TTTCTGGAAAATGA
1 TTTCCGGAAAATGA
97970899 TTT
1 TTT
97970902 ACTTTTCTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (14 bp):
TTTCCGGAAAATGA
Found at i:97971138 original size:18 final size:19
Alignment explanation
Indices: 97971108--97971143 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
97971098 TTGCAATGAT
97971108 TTATTTATAAATAAATAAA
1 TTATTTATAAATAAATAAA
*
97971127 TTATTT-TAAATATATAA
1 TTATTTATAAATAAATAA
97971144 TAATATTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TTATTTATAAATAAATAAA
Found at i:97971408 original size:22 final size:22
Alignment explanation
Indices: 97971361--97971446 Score: 79
Period size: 22 Copynumber: 4.0 Consensus size: 22
97971351 ATCCAAGTGC
*
97971361 ATAACTAATATTACACCATATG
1 ATAACTAATATTACACCACATG
* *
97971383 ATAACTAATATTACAGCACATT
1 ATAACTAATATTACACCACATG
* **
97971405 ATAAC-AACATT-GTCCA-AGTG
1 ATAACTAATATTACACCACA-TG
97971425 CATAACTAATATTACACCACAT
1 -ATAACTAATATTACACCACAT
97971447 TATCAATATC
Statistics
Matches: 48, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
19 1 0.02
20 3 0.06
21 10 0.21
22 29 0.60
23 4 0.08
24 1 0.02
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (22 bp):
ATAACTAATATTACACCACATG
Found at i:97972437 original size:32 final size:32
Alignment explanation
Indices: 97972391--97972451 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
97972381 TGTCAATCAT
97972391 TTCAATATCCAACAAGC-TGAAAACATAATAAA
1 TTCAATATCCAACAAGCTTG-AAACATAATAAA
*
97972423 TTCAATATCTAACAAGCTTGAAACATAAT
1 TTCAATATCCAACAAGCTTGAAACATAAT
97972452 CAATATCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
32 25 0.93
33 2 0.07
ACGTcount: A:0.49, C:0.18, G:0.07, T:0.26
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTGAAACATAATAAA
Found at i:97980271 original size:16 final size:17
Alignment explanation
Indices: 97980239--97980271 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
97980229 TTTTCATATT
*
97980239 TTTAATGTATTATAATA
1 TTTAATGTATAATAATA
97980256 TTTAATGTA-AATAATA
1 TTTAATGTATAATAATA
97980272 CAATTAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
TTTAATGTATAATAATA
Found at i:97986816 original size:18 final size:19
Alignment explanation
Indices: 97986776--97986816 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
97986766 ACTTTATCCG
*
97986776 TTTTTGAAAATTTTATTTA
1 TTTTTGAAAATTTTAATTA
97986795 TTTTTG-AAATTTCTAATT-
1 TTTTTGAAAATTT-TAATTA
97986813 TTTT
1 TTTT
97986817 ATAAAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTTTGAAAATTTTAATTA
Found at i:97991431 original size:24 final size:24
Alignment explanation
Indices: 97991404--97991449 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
97991394 GCATAAAATG
*
97991404 GAATACATAGGAATGACTTGAATA
1 GAATACATAGGAATAACTTGAATA
*
97991428 GAATACGTAGGAATAACTTGAA
1 GAATACATAGGAATAACTTGAA
97991450 CATATTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.24
Consensus pattern (24 bp):
GAATACATAGGAATAACTTGAATA
Found at i:97995398 original size:13 final size:13
Alignment explanation
Indices: 97995380--97995420 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
97995370 TTGTTATTAA
97995380 ATAGATATTTATT
1 ATAGATATTTATT
97995393 ATAGATATTTATT
1 ATAGATATTTATT
* *
97995406 ATTGTTA-TTATT
1 ATAGATATTTATT
97995418 ATA
1 ATA
97995421 TTATATTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 7 0.28
13 18 0.72
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
ATAGATATTTATT
Found at i:97995413 original size:22 final size:22
Alignment explanation
Indices: 97995388--97995429 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
97995378 AAATAGATAT
97995388 TTATTATAGATATT-TATTATTG
1 TTATTAT-GATATTATATTATTG
*
97995410 TTATTATTATATTATATTAT
1 TTATTATGATATTATATTAT
97995430 ATATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (22 bp):
TTATTATGATATTATATTATTG
Found at i:97996705 original size:18 final size:16
Alignment explanation
Indices: 97996682--97996743 Score: 52
Period size: 18 Copynumber: 3.5 Consensus size: 16
97996672 TAACAGTTAT
97996682 TGAATAATTGACTGATAC
1 TGAATAATTGA-TG-TAC
*
97996700 TGAATAACTGATTGTCAC
1 TGAATAATTGA-TGT-AC
*
97996718 TGAACAATTGATCGTTAC
1 TGAATAATTGAT-G-TAC
97996736 TGAATAAT
1 TGAATAAT
97996744 ATTGATAAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
17 2 0.06
18 33 0.92
19 1 0.03
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (16 bp):
TGAATAATTGATGTAC
Found at i:98006122 original size:19 final size:19
Alignment explanation
Indices: 98006098--98006135 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
98006088 GGGACCATAC
98006098 AAAATAAAATA-AAAAACAA
1 AAAATAAAA-ACAAAAACAA
98006117 AAAATAAAAACAAAAACAA
1 AAAATAAAAACAAAAACAA
98006136 TAAACAACCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (19 bp):
AAAATAAAAACAAAAACAA
Found at i:98006125 original size:13 final size:14
Alignment explanation
Indices: 98006103--98006132 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
98006093 CATACAAAAT
98006103 AAAATAAAAAACAA
1 AAAATAAAAAACAA
98006117 AAAAT-AAAAACAA
1 AAAATAAAAAACAA
98006130 AAA
1 AAA
98006133 CAATAAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.87, C:0.07, G:0.00, T:0.07
Consensus pattern (14 bp):
AAAATAAAAAACAA
Found at i:98006693 original size:147 final size:146
Alignment explanation
Indices: 98006426--98006728 Score: 588
Period size: 147 Copynumber: 2.1 Consensus size: 146
98006416 ACGTCGACAG
98006426 AATCTGTGAGAAGGAAATAAACGCAGCAAAAGAACGCACGAGAAAGAGCAAAATAACAGAATTTA
1 AATCTGTGAGAAGGAAATAAACGCAGCAAAAGAACGCACGAGAAAGAGCAAAATAACAGAATTTA
98006491 CAACAAATGACAGATAATGTAATTTTTTTCTATTTTTCATTATTTCTCTGTAAAATCAGGCTATA
66 CAACAAATGACAGATAATGTAATTTTTTTCTATTTTTCATTATTTCTCTGTAAAATCAGGCTATA
98006556 AAAAGGCCTCACTTGT
131 AAAAGGCCTCACTTGT
98006572 AAATCTGTGAGAAGGAAATAAACGCAGCAAAAGAACGCACGAGAAAGAGCAAAATAACAGAATTT
1 -AATCTGTGAGAAGGAAATAAACGCAGCAAAAGAACGCACGAGAAAGAGCAAAATAACAGAATTT
98006637 ACAACAAATGACAGATAATGTAATTTTTTTCTATTTTTCATTATTTCTCTGTAAAATCAGGCTAT
65 ACAACAAATGACAGATAATGTAATTTTTTTCTATTTTTCATTATTTCTCTGTAAAATCAGGCTAT
98006702 AAAAAGGCCTCACTTGT
130 AAAAAGGCCTCACTTGT
*
98006719 AATCTATGAG
1 AATCTGTGAG
98006729 GACTTACGCA
Statistics
Matches: 155, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
146 9 0.06
147 146 0.94
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (146 bp):
AATCTGTGAGAAGGAAATAAACGCAGCAAAAGAACGCACGAGAAAGAGCAAAATAACAGAATTTA
CAACAAATGACAGATAATGTAATTTTTTTCTATTTTTCATTATTTCTCTGTAAAATCAGGCTATA
AAAAGGCCTCACTTGT
Found at i:98010158 original size:18 final size:17
Alignment explanation
Indices: 98010137--98010201 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 17
98010127 TACTGACAGT
98010137 TACTGAATAATTGACTGG
1 TACTGAATAATTGA-TGG
* *
98010155 TACTGAATAACTGATTG
1 TACTGAATAATTGATGG
* *
98010172 TCACTGAACAATTGATCGT
1 T-ACTGAATAATTGAT-GG
98010191 TACTGAATAAT
1 TACTGAATAAT
98010202 ATTGATAAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
17 3 0.08
18 34 0.89
19 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (17 bp):
TACTGAATAATTGATGG
Found at i:98012947 original size:21 final size:22
Alignment explanation
Indices: 98012904--98012949 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
98012894 TATAAATTAT
* *
98012904 TTTCTTACTCTTTCAATTTAAA
1 TTTCTTAATCTTTCAATTAAAA
*
98012926 TTTCTTAAT-TTTCTATTAAAA
1 TTTCTTAATCTTTCAATTAAAA
98012947 TTT
1 TTT
98012950 ATCAATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTCTTAATCTTTCAATTAAAA
Found at i:98012956 original size:21 final size:21
Alignment explanation
Indices: 98012914--98012966 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
98012904 TTTCTTACTC
* * *
98012914 TTTCAATTTAAATTTCTTAAT
1 TTTCAATTAAAATTTATCAAT
*
98012935 TTTCTATTAAAATTTATCAAT
1 TTTCAATTAAAATTTATCAAT
98012956 TTAATCAATTA
1 TT--TCAATTA
98012967 TATATCATGG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 19 0.76
23 6 0.24
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTCAATTAAAATTTATCAAT
Found at i:98015637 original size:103 final size:109
Alignment explanation
Indices: 98015450--98015650 Score: 270
Period size: 112 Copynumber: 1.9 Consensus size: 109
98015440 GTCTCAAATA
*
98015450 AAGTTTTAAGTTTGAATTTTATTAATATCAAATACTGATAAAAAAGAAGAAGAAGGTGTAAGTCA
1 AAGTTTTAAGTTTGAATCTTATTAATATCAAATACTGATAAAAAAGAAGAAGAAGGTGTAAGT--
* *
98015515 CATTCACTCGTGTAGGGTAGAAAGCCGGATGAATTTGTTTTTTTTTT
64 -ATTCACTCGTGTAAGGTAGAAAGCCGAATGAATTTGTTTTTTTTTT
* * *
98015562 AAGTTTTAAGTTTGAATCTTATTGATATTAAATATTGAT-AAAAA-AAGAA-AAGGTGT-A-T-T
1 AAGTTTTAAGTTTGAATCTTATTAATATCAAATACTGATAAAAAAGAAGAAGAAGGTGTAAGTAT
*
98015621 TCACTCGTGTAAGGTAGAACGCCGAATGAA
66 TCACTCGTGTAAGGTAGAAAGCCGAATGAA
98015651 AAGGATGAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
103 28 0.34
107 1 0.01
108 1 0.01
109 7 0.09
110 5 0.06
111 5 0.06
112 35 0.43
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (109 bp):
AAGTTTTAAGTTTGAATCTTATTAATATCAAATACTGATAAAAAAGAAGAAGAAGGTGTAAGTAT
TCACTCGTGTAAGGTAGAAAGCCGAATGAATTTGTTTTTTTTTT
Found at i:98018085 original size:22 final size:22
Alignment explanation
Indices: 98018060--98018105 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
98018050 ATGTGTATAT
98018060 ATATATTATATAATTTAAGTTA
1 ATATATTATATAATTTAAGTTA
98018082 ATATATTATATAATTTAAGTTA
1 ATATATTATATAATTTAAGTTA
98018104 AT
1 AT
98018106 TTTAAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
ATATATTATATAATTTAAGTTA
Found at i:98021696 original size:19 final size:20
Alignment explanation
Indices: 98021672--98021713 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
98021662 TAATAAGTAA
*
98021672 ATACATGTGTACA-AAAAAT
1 ATACATATGTACATAAAAAT
*
98021691 ATACATATGTACATAATAAT
1 ATACATATGTACATAAAAAT
98021711 ATA
1 ATA
98021714 TGAATACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.52, C:0.10, G:0.07, T:0.31
Consensus pattern (20 bp):
ATACATATGTACATAAAAAT
Found at i:98021753 original size:15 final size:14
Alignment explanation
Indices: 98021733--98021769 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
98021723 AATATTTAAG
98021733 TATAATATAATATAT
1 TATAATATAAT-TAT
98021748 TATAATAT-ATTAT
1 TATAATATAATTAT
98021761 TATAA-ATAA
1 TATAATATAA
98021770 CTAAAAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 2 0.10
13 9 0.43
14 2 0.10
15 8 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TATAATATAATTAT
Found at i:98022770 original size:40 final size:37
Alignment explanation
Indices: 98022690--98022773 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
98022680 CGACCTGAGT
* **
98022690 CGATGAGACACTGGGTGCCAACTTACTTCGGTTTAGC
1 CGATGAGACACTGAGTGCCAACTTACTTCGAATTAGC
* *
98022727 CGATGAGACACTGAGTGTCAACTTATTACTTCGAATTATC
1 CGATGAGACACTGAGTGCCAAC---TTACTTCGAATTAGC
98022767 CGATGAG
1 CGATGAG
98022774 GTACTGGGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
37 20 0.51
40 19 0.49
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (37 bp):
CGATGAGACACTGAGTGCCAACTTACTTCGAATTAGC
Found at i:98026181 original size:17 final size:17
Alignment explanation
Indices: 98026159--98026201 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
98026149 AGATTTTGGG
*
98026159 AAAATAGAATAAAATAA
1 AAAATAAAATAAAATAA
98026176 AAAATAAAATAAAATAA
1 AAAATAAAATAAAATAA
98026193 AAAATAAAA
1 AAAATAAAA
98026202 AGGTTAAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.16
Consensus pattern (17 bp):
AAAATAAAATAAAATAA
Found at i:98026183 original size:12 final size:12
Alignment explanation
Indices: 98026166--98026202 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
98026156 GGGAAAATAG
98026166 AATAAAATAAAA
1 AATAAAATAAAA
98026178 AATAAAATAAAA
1 AATAAAATAAAA
98026190 TAA-AAAATAAAA
1 -AATAAAATAAAA
98026202 A
1 A
98026203 GGTTAAACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 1 0.04
12 21 0.88
13 2 0.08
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AATAAAATAAAA
Found at i:98027057 original size:13 final size:11
Alignment explanation
Indices: 98027024--98027057 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
98027014 AAGAAAAATA
98027024 TATAATTTTTT
1 TATAATTTTTT
98027035 TATTAATTTTGTT
1 TA-TAATTTT-TT
98027048 TATAATTTTT
1 TATAATTTTT
98027058 AAAATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 3 0.14
12 14 0.67
13 4 0.19
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (11 bp):
TATAATTTTTT
Found at i:98027652 original size:12 final size:12
Alignment explanation
Indices: 98027635--98027659 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98027625 GAGTGGTTTT
98027635 AATATATATATA
1 AATATATATATA
98027647 AATATATATATA
1 AATATATATATA
98027659 A
1 A
98027660 TTGTCAGGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATATATATATA
Found at i:98028552 original size:14 final size:14
Alignment explanation
Indices: 98028533--98028570 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
98028523 CAGTAGTATG
98028533 TGAAAAAATAATTT
1 TGAAAAAATAATTT
* *
98028547 TGAAAAGATATTTT
1 TGAAAAAATAATTT
98028561 TGAAAAAATA
1 TGAAAAAATA
98028571 GTGTAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (14 bp):
TGAAAAAATAATTT
Found at i:98028582 original size:126 final size:126
Alignment explanation
Indices: 98028357--98028665 Score: 494
Period size: 126 Copynumber: 2.5 Consensus size: 126
98028347 ATTAAGTATT
* *
98028357 AATTACAAAAAAAAGCTCCCACGTGGACGTTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
1 AATTACGAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
* * *
98028422 AAGAAGATGTTTCTGAAAAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
66 AAGAAGATATTTCTGAAAAAATAGTGTAAAAAACGCTTCAAGAAGGATGCACAGTCAGCAA
* *
98028483 AATTACGAAAAAAATCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATGTGAAAAAATAATTTT
1 AATTACGAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
*
98028548 GAA-AAGATATTTTTGAAAAAATAGTGTAAAAAACGCTTCAAGAAGGATGCACAGTCAGCAA
66 -AAGAAGATATTTCTGAAAAAATAGTGTAAAAAACGCTTCAAGAAGGATGCACAGTCAGCAA
* * * *
98028609 AATTAAGGAAAAAAGCTCCCACGTGGACGCTCTTTTACTGCAGTAGTATCTGAAAAA
1 AATTACGAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAA
98028666 GCTTTAGTCT
Statistics
Matches: 168, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
126 166 0.99
127 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (126 bp):
AATTACGAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
AAGAAGATATTTCTGAAAAAATAGTGTAAAAAACGCTTCAAGAAGGATGCACAGTCAGCAA
Found at i:98038397 original size:22 final size:21
Alignment explanation
Indices: 98038369--98038411 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
98038359 TTTTATTTAC
* *
98038369 TTATTTATGCTTTTATTCATTT
1 TTATTTAAGATTTTATT-ATTT
98038391 TTATTTAAGATTTTATTATTT
1 TTATTTAAGATTTTATTATTT
98038412 GTTTTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (21 bp):
TTATTTAAGATTTTATTATTT
Found at i:98039848 original size:11 final size:10
Alignment explanation
Indices: 98039799--98039848 Score: 55
Period size: 11 Copynumber: 4.6 Consensus size: 10
98039789 TTGACAAAAA
98039799 TTGAGAGAAAT
1 TTGAGAG-AAT
*
98039810 TTGAAAGAAT
1 TTGAGAGAAT
98039820 TTGGAGAGAAT
1 TT-GAGAGAAT
98039831 TTAGAGAGAAT
1 TT-GAGAGAAT
98039842 TGTGAGA
1 T-TGAGA
98039849 TGACTATTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 5 0.15
11 28 0.82
12 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (10 bp):
TTGAGAGAAT
Found at i:98039848 original size:22 final size:21
Alignment explanation
Indices: 98039799--98039848 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
98039789 TTGACAAAAA
98039799 TTGAGAGAAATTTGAAAGAAT
1 TTGAGAGAAATTTGAAAGAAT
*
98039820 TTG-GAGAGAATTTAGAGAGAAT
1 TTGAGAGA-AATTT-GAAAGAAT
98039842 TGTGAGA
1 T-TGAGA
98039849 TGACTATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 4 0.17
21 8 0.33
22 8 0.33
23 2 0.08
24 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (21 bp):
TTGAGAGAAATTTGAAAGAAT
Found at i:98040302 original size:32 final size:31
Alignment explanation
Indices: 98040252--98040327 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 31
98040242 TAACATTATT
* **
98040252 TATTTAAAATTGTAATTATTATATTTTAA-TAA
1 TATTTAAAA-TATAATTA-TATATTCAAATTAA
98040284 TATTTAAAATATAGATTATATATTCAAATTAA
1 TATTTAAAATATA-ATTATATATTCAAATTAA
*
98040316 TTTTTAAAATAT
1 TATTTAAAATAT
98040328 TTAAAATTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 11 0.29
32 27 0.71
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (31 bp):
TATTTAAAATATAATTATATATTCAAATTAA
Found at i:98043614 original size:18 final size:19
Alignment explanation
Indices: 98043588--98043641 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 19
98043578 AGTAAAGCTT
*
98043588 ATATTAAAATTCTTGAAGG
1 ATATTAAAATTCTTGAAGC
* *
98043607 AT-TTAAAATGCTAGAAGC
1 ATATTAAAATTCTTGAAGC
*
98043625 ATATTGAAATTCTTGAA
1 ATATTAAAATTCTTGAA
98043642 AAGTTTTTCA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 15 0.54
19 13 0.46
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (19 bp):
ATATTAAAATTCTTGAAGC
Found at i:98045747 original size:19 final size:19
Alignment explanation
Indices: 98045723--98045759 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
98045713 AATAAACGTG
*
98045723 ACAAAAAGTAGAAAAATGA
1 ACAAAAAGAAGAAAAATGA
*
98045742 ACAAAAAGAAGGAAAATG
1 ACAAAAAGAAGAAAAATG
98045760 GAAAAAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.68, C:0.05, G:0.19, T:0.08
Consensus pattern (19 bp):
ACAAAAAGAAGAAAAATGA
Found at i:98045868 original size:21 final size:19
Alignment explanation
Indices: 98045844--98045886 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
98045834 ATATATTTGA
98045844 TTTTTTT-ATTAATGCTTAAT
1 TTTTTTTGATTAAT--TTAAT
*
98045864 TTTTTTTGATTTATTTAAT
1 TTTTTTTGATTAATTTAAT
98045883 TTTT
1 TTTT
98045887 ATAATCGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
20 7 0.33
21 5 0.24
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (19 bp):
TTTTTTTGATTAATTTAAT
Found at i:98049893 original size:29 final size:30
Alignment explanation
Indices: 98049855--98049922 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
98049845 AGTCTATATA
* *
98049855 TTTATAATTTTAAAGA-ATTAAATTAAAAT
1 TTTATTATTTTAAAGAGATTAAAATAAAAT
* *
98049884 TTTATTATTTTTAAGAGATTAAAATATAAT
1 TTTATTATTTTAAAGAGATTAAAATAAAAT
98049914 TTTA-TATTT
1 TTTATTATTT
98049923 ATTAATTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.56
30 15 0.44
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (30 bp):
TTTATTATTTTAAAGAGATTAAAATAAAAT
Found at i:98050279 original size:6 final size:6
Alignment explanation
Indices: 98050263--98050319 Score: 98
Period size: 6 Copynumber: 9.7 Consensus size: 6
98050253 AATTTTTTTT
*
98050263 AAAAT- AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AACATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
98050310 AAAATA AAAA
1 AAAATA AAAA
98050320 AGATGCTCCA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
5 5 0.10
6 44 0.90
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:98053986 original size:16 final size:16
Alignment explanation
Indices: 98053965--98053995 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
98053955 TTTAAGATAC
98053965 ATATTAAATCGTACAT
1 ATATTAAATCGTACAT
98053981 ATATTAAATCGTACA
1 ATATTAAATCGTACA
98053996 ATGGAGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (16 bp):
ATATTAAATCGTACAT
Found at i:98057192 original size:14 final size:14
Alignment explanation
Indices: 98057173--98057204 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
98057163 GGGAGTCTAA
98057173 TGTATGTTTAAGTT
1 TGTATGTTTAAGTT
98057187 TGTATGTTTAAGTT
1 TGTATGTTTAAGTT
98057201 TGTA
1 TGTA
98057205 CACATTCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (14 bp):
TGTATGTTTAAGTT
Done.