Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 292 of 362
Found at i:98066048 original size:27 final size:27
Alignment explanation
Indices: 98066017--98066194 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
98066007 TAAATTGTAC
98066017 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
98066044 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
98066070 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
98066098 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
98066126 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
98066153 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
98066180 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
98066195 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:98066131 original size:82 final size:81
Alignment explanation
Indices: 98066018--98066173 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
98066008 AAATTGTACA
* *
98066018 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
98066082 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
98066099 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
98066164 TGCGAGTTGA
65 TGCGAATTGA
98066174 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:98066185 original size:82 final size:81
Alignment explanation
Indices: 98066014--98066194 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
98066004 GATTAAATTG
* *
98066014 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
98066079 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
98066095 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
98066159 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
98066177 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
98066195 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:98069556 original size:13 final size:13
Alignment explanation
Indices: 98069479--98069556 Score: 54
Period size: 15 Copynumber: 5.6 Consensus size: 13
98069469 TTTTAACAGA
98069479 TTAT-TATTA-TT
1 TTATATATTATTT
98069490 TTATATCATTATTT
1 TTATAT-ATTATTT
*
98069504 TTAT-TTTTACTTGT
1 TTATATATTA-TT-T
98069518 ATTATATATTATTTAT
1 -TTATATATTA-TT-T
98069534 TTATACATATTATTT
1 TTAT--ATATTATTT
98069549 TTATATAT
1 TTATATAT
98069557 AAACTTTCAT
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
11 4 0.07
12 4 0.07
13 11 0.20
14 7 0.13
15 13 0.24
16 9 0.17
17 6 0.11
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (13 bp):
TTATATATTATTT
Found at i:98069936 original size:19 final size:21
Alignment explanation
Indices: 98069899--98069939 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
98069889 GCTCAATATA
*
98069899 TTTTATATATAATTATTATTC
1 TTTTATAAATAATTATTATTC
*
98069920 TTTTATAAATATTTTATTAT
1 TTTTATAAATA-ATTATTAT
98069940 GATGTGTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTATAAATAATTATTATTC
Found at i:98071872 original size:40 final size:40
Alignment explanation
Indices: 98071774--98071990 Score: 277
Period size: 40 Copynumber: 5.5 Consensus size: 40
98071764 AAGCCAAGTA
* * *
98071774 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
98071812 CCTTCGGGA-TATAGCTCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACT-TAGCCCGGATATAGTAACTCGCACAAATG
*
98071852 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
98071892 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
98071932 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
98071973 -CTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
98071991 TTATCATCCA
Statistics
Matches: 162, Mismatches: 9, Indels: 14
0.88 0.05 0.08
Matches are distributed among these distances:
37 1 0.01
38 12 0.07
39 17 0.10
40 122 0.75
41 6 0.04
42 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:98078591 original size:29 final size:29
Alignment explanation
Indices: 98078546--98078627 Score: 128
Period size: 29 Copynumber: 2.8 Consensus size: 29
98078536 TATATATGTG
* *
98078546 AATTATCGAGCATTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCAAAGTAA
*
98078575 AATTATTGAGCACTAAGTGTGCAAAGTAA
1 AATTATCGAGCACTAAGTGTGCAAAGTAA
*
98078604 AACTATCGAGCACTAAGTGTGCAA
1 AATTATCGAGCACTAAGTGTGCAA
98078628 TCTCATTGCA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCAAAGTAA
Found at i:98085637 original size:5 final size:5
Alignment explanation
Indices: 98085627--98085652 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
98085617 GAGATAAAAA
98085627 AAATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT A
98085653 GTTTGAAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:98086261 original size:29 final size:29
Alignment explanation
Indices: 98086219--98086300 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
98086209 TATATATGTG
*
98086219 AATTATCGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCAAAGTAA
*
98086248 AATTATTGAGCACTAAGTGTGCAAAGTAA
1 AATTATCGAGCACTAAGTGTGCAAAGTAA
*
98086277 AACTATCGAGCACTAAGTGTGCAA
1 AATTATCGAGCACTAAGTGTGCAA
98086301 TCTCATTGCA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCAAAGTAA
Found at i:98088442 original size:55 final size:53
Alignment explanation
Indices: 98088372--98088504 Score: 140
Period size: 55 Copynumber: 2.4 Consensus size: 53
98088362 TGCCCTTAGC
* * * * * *
98088372 CCGTGTGCAACACTGACTTAAAAGCACGGCTATGACGCATGCCCGTGTGGCCTG
1 CCGTGTACAACACTGACTTAAAA-CACGACCATGACACACGCCCGTGTGACCTG
* * *
98088426 TCCGTGTACAATACTGACTTTAATACACGACCATGGCACACGCCCGTGTGACCTG
1 -CCGTGTACAACACTGAC-TTAAAACACGACCATGACACACGCCCGTGTGACCTG
*
98088481 CCAGTGTACAACAATGACTTAAAA
1 CC-GTGTACAACACTGACTTAAAA
98088505 TTTTAAGTGC
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
54 7 0.11
55 52 0.81
56 5 0.08
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (53 bp):
CCGTGTACAACACTGACTTAAAACACGACCATGACACACGCCCGTGTGACCTG
Found at i:98096401 original size:50 final size:50
Alignment explanation
Indices: 98096306--98096582 Score: 455
Period size: 50 Copynumber: 5.5 Consensus size: 50
98096296 CGATGATCAG
* * * *
98096306 GTAGCCGAAGCTACCACTTTTTACTTGCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
98096357 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* * *
98096407 GTAGCCGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
98096457 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
98096507 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
98096557 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
98096583 GTTGCCATGG
Statistics
Matches: 211, Mismatches: 15, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
50 189 0.90
51 22 0.10
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:98099311 original size:37 final size:37
Alignment explanation
Indices: 98099270--98099343 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
98099260 AGAGATGAAG
98099270 AAATACTGATCATAAATCGACCAGACCAACAGGGCTT
1 AAATACTGATCATAAATCGACCAGACCAACAGGGCTT
98099307 AAATACTGATCATAAATCGACCAGACCAACAGGGCTT
1 AAATACTGATCATAAATCGACCAGACCAACAGGGCTT
98099344 TTGTCTAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.24, G:0.16, T:0.19
Consensus pattern (37 bp):
AAATACTGATCATAAATCGACCAGACCAACAGGGCTT
Found at i:98101487 original size:31 final size:31
Alignment explanation
Indices: 98101433--98101502 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
98101423 CTTGTCACTT
* *
98101433 GTAGCCGAAGCTATCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTATTCACTAATCAG
* * * *
98101464 GTAGCCGGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTATTCACTAATCAG
*
98101495 GTAACCGA
1 GTAGCCGA
98101503 TGATCAGGTA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTAATCAG
Found at i:98101541 original size:31 final size:31
Alignment explanation
Indices: 98101503--98101561 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
98101493 AAGTAACCGA
98101503 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
98101534 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
98101562 TACTTGCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:98101636 original size:50 final size:50
Alignment explanation
Indices: 98101541--98101867 Score: 528
Period size: 50 Copynumber: 6.5 Consensus size: 50
98101531 CATTGATCAG
* * * *
98101541 GTAGCCGAAGCTACCACTTTTTACTTGCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
98101592 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* * *
98101642 GTAGCCGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
**
98101692 GTAGCTAAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
98101742 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
98101792 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
98101842 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
98101868 GTTGCCATGG
Statistics
Matches: 256, Mismatches: 20, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
50 234 0.91
51 22 0.09
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:98117098 original size:13 final size:13
Alignment explanation
Indices: 98117082--98117106 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98117072 GAATGATTTC
98117082 GTAAAAATTTTGT
1 GTAAAAATTTTGT
98117095 GTAAAAATTTTG
1 GTAAAAATTTTG
98117107 ACGTTTGGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (13 bp):
GTAAAAATTTTGT
Found at i:98123004 original size:30 final size:27
Alignment explanation
Indices: 98122950--98123015 Score: 87
Period size: 27 Copynumber: 2.3 Consensus size: 27
98122940 CCATGTTCTA
*
98122950 GCCCGTGTGCCACACACGAGTAGACAT
1 GCCCGTGTGCCACACACGAGTAGACAC
*
98122977 GCCTGTGTGCCACACACGACCAGTAGACAC
1 GCCCGTGTGCCACACACG---AGTAGACAC
98123007 GCCCGTGTG
1 GCCCGTGTG
98123016 TCTAGGCTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 17 0.52
30 16 0.48
ACGTcount: A:0.23, C:0.35, G:0.27, T:0.15
Consensus pattern (27 bp):
GCCCGTGTGCCACACACGAGTAGACAC
Found at i:98127213 original size:38 final size:38
Alignment explanation
Indices: 98127157--98127267 Score: 152
Period size: 38 Copynumber: 2.9 Consensus size: 38
98127147 TGTAACGTTA
* *
98127157 ATTCAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGAT
*
98127195 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTG-TAGTGAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGAT
* * * *
98127232 ATTCGAGCTCTATGCCTAGTAGGCTTTGTGCTGGTG
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTG
98127268 TAATTGTATC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 31 0.48
38 33 0.52
ACGTcount: A:0.14, C:0.19, G:0.32, T:0.36
Consensus pattern (38 bp):
ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGAT
Found at i:98127248 original size:37 final size:38
Alignment explanation
Indices: 98127169--98127262 Score: 127
Period size: 37 Copynumber: 2.5 Consensus size: 38
98127159 TCAGGCTTTG
* * * *
98127169 TGCCTAGCAGGCTTTGTGCCGGTGATATTCGGGCTTTG
1 TGCCTAGCAGGCTTTGTGCCAGTGATATTCGAGCTCTA
*
98127207 TGCCTAGCAGGCTTTGTG-TAGTGATATTCGAGCTCTA
1 TGCCTAGCAGGCTTTGTGCCAGTGATATTCGAGCTCTA
*
98127244 TGCCTAGTAGGCTTTGTGC
1 TGCCTAGCAGGCTTTGTGC
98127263 TGGTGTAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
37 31 0.63
38 18 0.37
ACGTcount: A:0.14, C:0.20, G:0.31, T:0.35
Consensus pattern (38 bp):
TGCCTAGCAGGCTTTGTGCCAGTGATATTCGAGCTCTA
Found at i:98127593 original size:62 final size:62
Alignment explanation
Indices: 98127518--98127641 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
98127508 GATTATGTAT
98127518 TACGACTTATAAATCCTAGTATGTTATATATGAAAGGTATATGTGATCTTTTAATATACTCA
1 TACGACTTATAAATCCTAGTATGTTATATATGAAAGGTATATGTGATCTTTTAATATACTCA
98127580 TACGACTTATAAATCCTAGTATGTTATATATGAAAGGTATATGTGATCTTTTAATATACTCA
1 TACGACTTATAAATCCTAGTATGTTATATATGAAAGGTATATGTGATCTTTTAATATACTCA
98127642 ATTATGAGTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.40
Consensus pattern (62 bp):
TACGACTTATAAATCCTAGTATGTTATATATGAAAGGTATATGTGATCTTTTAATATACTCA
Found at i:98132404 original size:16 final size:16
Alignment explanation
Indices: 98132383--98132444 Score: 61
Period size: 16 Copynumber: 3.5 Consensus size: 16
98132373 TAATTCGGGT
98132383 TTTGTGCCTATCAGGC
1 TTTGTGCCTATCAGGC
98132399 TTTGTGCCGCTGAGATTCAGGC
1 TTTGTG-C-CT---A-TCAGGC
*
98132421 TTTGTGCCTAGCAGGC
1 TTTGTGCCTATCAGGC
98132437 TTTGTGCC
1 TTTGTGCC
98132445 AATGATATTC
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
16 19 0.49
17 2 0.05
18 2 0.05
20 2 0.05
21 2 0.05
22 12 0.31
ACGTcount: A:0.11, C:0.24, G:0.29, T:0.35
Consensus pattern (16 bp):
TTTGTGCCTATCAGGC
Found at i:98132464 original size:22 final size:22
Alignment explanation
Indices: 98132434--98132486 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
98132424 GTGCCTAGCA
98132434 GGCTTTGTGCCAATGATATTCG
1 GGCTTTGTGCCAATGATATTCG
* *
98132456 GGCTCTGTGCCAGTGATATTCG
1 GGCTTTGTGCCAATGATATTCG
98132478 GGCTTTGTG
1 GGCTTTGTG
98132487 GCTAGTAGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.13, C:0.19, G:0.32, T:0.36
Consensus pattern (22 bp):
GGCTTTGTGCCAATGATATTCG
Found at i:98132465 original size:38 final size:38
Alignment explanation
Indices: 98132375--98132466 Score: 121
Period size: 38 Copynumber: 2.4 Consensus size: 38
98132365 GGTAATGTTA
* * **
98132375 ATTCGGGTTTTGTGCCTATCAGGCTTTGTGCCGCTGAG
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCAATGAG
* *
98132413 ATTCAGGCTTTGTGCCTAGCAGGCTTTGTGCCAATGAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCAATGAG
*
98132451 ATTCGGGCTCTGTGCC
1 ATTCGGGCTTTGTGCC
98132467 AGTGATATTC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.13, C:0.23, G:0.29, T:0.35
Consensus pattern (38 bp):
ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCAATGAG
Found at i:98132497 original size:60 final size:60
Alignment explanation
Indices: 98132396--98132519 Score: 160
Period size: 60 Copynumber: 2.1 Consensus size: 60
98132386 GTGCCTATCA
* *
98132396 GGCTTTGTGCCGCTGAGATTCAGGCTTTGTGCCTAGCAGGCTTTGTGCCAATGATATTCG
1 GGCTCTGTGCCGCTGAGATTCAGGCTTTGTGCCTAGCAGGCTTTGTACCAATGATATTCG
* * * * * *
98132456 GGCTCTGTGCCAG-TGATATTCGGGCTTTGTGGCTAGTAGGCTTTGTATCAGTGATATTCG
1 GGCTCTGTGCC-GCTGAGATTCAGGCTTTGTGCCTAGCAGGCTTTGTACCAATGATATTCG
98132516 GGCT
1 GGCT
98132520 TTATGCCTAG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 54 0.98
61 1 0.02
ACGTcount: A:0.15, C:0.19, G:0.31, T:0.35
Consensus pattern (60 bp):
GGCTCTGTGCCGCTGAGATTCAGGCTTTGTGCCTAGCAGGCTTTGTACCAATGATATTCG
Found at i:98132517 original size:38 final size:38
Alignment explanation
Indices: 98132466--98132539 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
98132456 GGCTCTGTGC
* * *
98132466 CAGTGATATTCGGGCTTTGTGGCTAGTAGGCTTTGTAT
1 CAGTGATATTCGGGCTTTATGCCTAGTAGCCTTTGTAT
98132504 CAGTGATATTCGGGCTTTATGCCTAGTAGCCTTTGT
1 CAGTGATATTCGGGCTTTATGCCTAGTAGCCTTTGT
98132540 GTTGGTGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.16, C:0.16, G:0.28, T:0.39
Consensus pattern (38 bp):
CAGTGATATTCGGGCTTTATGCCTAGTAGCCTTTGTAT
Found at i:98134471 original size:9 final size:9
Alignment explanation
Indices: 98134457--98134498 Score: 84
Period size: 9 Copynumber: 4.7 Consensus size: 9
98134447 AAGAAAGAGC
98134457 TTTGGTCAT
1 TTTGGTCAT
98134466 TTTGGTCAT
1 TTTGGTCAT
98134475 TTTGGTCAT
1 TTTGGTCAT
98134484 TTTGGTCAT
1 TTTGGTCAT
98134493 TTTGGT
1 TTTGGT
98134499 ATATGTTAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.10, C:0.10, G:0.24, T:0.57
Consensus pattern (9 bp):
TTTGGTCAT
Found at i:98134613 original size:2 final size:2
Alignment explanation
Indices: 98134608--98134632 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
98134598 GTTGTATATA
98134608 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
98134633 AAATGGCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:98144352 original size:3 final size:3
Alignment explanation
Indices: 98144337--98144371 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
98144327 ATTTTGATGT
* *
98144337 GAA GAA AAA GAA GAA GAA AAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
98144372 GAGTTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:98144354 original size:12 final size:12
Alignment explanation
Indices: 98144337--98144371 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
98144327 ATTTTGATGT
98144337 GAAGAAAAAGAA
1 GAAGAAAAAGAA
98144349 GAAGAAAAAGAA
1 GAAGAAAAAGAA
*
98144361 GAAGAAGAAGA
1 GAAGAAAAAGA
98144372 GAGTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (12 bp):
GAAGAAAAAGAA
Found at i:98158768 original size:46 final size:46
Alignment explanation
Indices: 98158692--98158824 Score: 176
Period size: 46 Copynumber: 2.9 Consensus size: 46
98158682 TTAATATTAT
* * * *
98158692 TGTATTCTCGAGTTTACAACATATGTAGGAGCTCAGAACCTAAACC
1 TGTATTCTCGAGTCTGCAACACATGCAGGAGCTCAGAACCTAAACC
* **
98158738 TGTATTCTTGAGTCTGCAACACATGCAGGAGCTCAGAACCTATTCC
1 TGTATTCTCGAGTCTGCAACACATGCAGGAGCTCAGAACCTAAACC
* * *
98158784 TGTATTCTCAAGTCCGCAACACGTGCAGGAGCTCAGAACCT
1 TGTATTCTCGAGTCTGCAACACATGCAGGAGCTCAGAACCT
98158825 GCACAAAAAT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (46 bp):
TGTATTCTCGAGTCTGCAACACATGCAGGAGCTCAGAACCTAAACC
Found at i:98172495 original size:17 final size:17
Alignment explanation
Indices: 98172473--98172506 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
98172463 TTAAATTGAA
98172473 AGAAATCATAAGTTGGC
1 AGAAATCATAAGTTGGC
98172490 AGAAATCATAAGTTGGC
1 AGAAATCATAAGTTGGC
98172507 GGTTTCTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
AGAAATCATAAGTTGGC
Found at i:98173788 original size:17 final size:17
Alignment explanation
Indices: 98173752--98173801 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
98173742 CCATTCAACA
98173752 TTACATAATTTCACATACTT
1 TTACAT-ATTT-A-ATACTT
98173772 TTACGA-ATTTAATACTT
1 TTAC-ATATTTAATACTT
98173789 TTACATATTTAAT
1 TTACATATTTAAT
98173802 TGACATGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 1 0.04
17 17 0.61
18 1 0.04
19 4 0.14
20 4 0.14
21 1 0.04
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (17 bp):
TTACATATTTAATACTT
Found at i:98183561 original size:19 final size:18
Alignment explanation
Indices: 98183537--98183579 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
98183527 ACCATGTTTA
98183537 TATTTTA-ACACATGTTAAT
1 TATTTTATA-ACAT-TTAAT
*
98183556 TATTTTATAATATTTAAT
1 TATTTTATAACATTTAAT
98183574 TATTTT
1 TATTTT
98183580 TCGACAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 11 0.50
19 10 0.45
20 1 0.05
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (18 bp):
TATTTTATAACATTTAAT
Found at i:98206789 original size:13 final size:13
Alignment explanation
Indices: 98206771--98206799 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
98206761 CACATGGGCA
98206771 TGTGACACGGCCG
1 TGTGACACGGCCG
98206784 TGTGACACGGCCG
1 TGTGACACGGCCG
98206797 TGT
1 TGT
98206800 CCCTTTGGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.28, G:0.38, T:0.21
Consensus pattern (13 bp):
TGTGACACGGCCG
Found at i:98220168 original size:43 final size:42
Alignment explanation
Indices: 98220119--98220214 Score: 122
Period size: 43 Copynumber: 2.3 Consensus size: 42
98220109 CATATTCCAT
** *
98220119 ATATGGTCTTACATGTAA-TCTCATATCGATGCCAATAGCCCAG
1 ATATGGTCTTAC-TCAAAGTCTCATATCGATGCC-ATAGCACAG
* *
98220162 CTATGGTCTTACTCAAAGTCTCATATCGATGCCATATCACAG
1 ATATGGTCTTACTCAAAGTCTCATATCGATGCCATAGCACAG
98220204 ATATGGTCTTA
1 ATATGGTCTTA
98220215 AACATAGTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 20 0.43
43 26 0.57
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
ATATGGTCTTACTCAAAGTCTCATATCGATGCCATAGCACAG
Found at i:98225717 original size:36 final size:36
Alignment explanation
Indices: 98225670--98225745 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
98225660 AGAGCATATA
* *
98225670 TGTCTGAGGCATTTCATCATGTTTTGATATATTACC
1 TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
98225706 TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
1 TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
98225742 TGTC
1 TGTC
98225746 CTTTGACATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.42
Consensus pattern (36 bp):
TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
Found at i:98232658 original size:20 final size:20
Alignment explanation
Indices: 98232616--98232658 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
98232606 GAGGCATCGT
* *
98232616 AGTGTAAATAGAGACACTGA
1 AGTGTAAATAAAGACACTAA
**
98232636 AGTGTAAATAAAGGTACTAA
1 AGTGTAAATAAAGACACTAA
98232656 AGT
1 AGT
98232659 CTGAATAGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.07, G:0.23, T:0.23
Consensus pattern (20 bp):
AGTGTAAATAAAGACACTAA
Found at i:98237929 original size:30 final size:30
Alignment explanation
Indices: 98237893--98238050 Score: 163
Period size: 30 Copynumber: 5.3 Consensus size: 30
98237883 TTAGTGAGTT
* * *
98237893 ACACGGCTGGTTGCCAGGACCGTGTGACCC
1 ACACGGCCGGTTGGCACGACCGTGTGACCC
** *
98237923 ACACGGCTAGTTGGCACGACCGCGTGACCC
1 ACACGGCCGGTTGGCACGACCGTGTGACCC
* *
98237953 ACACGGCCGGTTGGTACGATCGTGTGACCC
1 ACACGGCCGGTTGGCACGACCGTGTGACCC
* * *
98237983 ACACAGCCGGTTGGCACGACCGAGTGACCA
1 ACACGGCCGGTTGGCACGACCGTGTGACCC
* * * ** *
98238013 ACATGGCCGGTCGGCACAACTATGTGACCT
1 ACACGGCCGGTTGGCACGACCGTGTGACCC
98238043 ACACGGCC
1 ACACGGCC
98238051 TGGACACACG
Statistics
Matches: 105, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 105 1.00
ACGTcount: A:0.21, C:0.34, G:0.30, T:0.15
Consensus pattern (30 bp):
ACACGGCCGGTTGGCACGACCGTGTGACCC
Found at i:98239052 original size:3 final size:3
Alignment explanation
Indices: 98239033--98239167 Score: 79
Period size: 3 Copynumber: 45.0 Consensus size: 3
98239023 TATGTATTTC
* *
98239033 TTA TATA TTA TTG TTA TTA TTA GTTA -GA TTA TT- TTA TT- TCT- TTA
1 TTA T-TA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA T-TA TTA
* *
98239077 TTGA TTA TTA TTA TTC TTA TATA TTA TTA TTA TTA GTTA -GA TTA TT-
1 TT-A TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA
* * *
98239123 TTA TT- TCT- TTA TTGA TTA TTA TTA TTC TTA GTA TTA TTC TTA TTA
1 TTA TTA T-TA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
98239168 GTCATTTTTC
Statistics
Matches: 104, Mismatches: 14, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
2 10 0.10
3 76 0.73
4 18 0.17
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:98239129 original size:57 final size:57
Alignment explanation
Indices: 98239030--98239169 Score: 228
Period size: 57 Copynumber: 2.4 Consensus size: 57
98239020 ATTTATGTAT
98239030 TTCTTATATATTATTGTTATTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTA
1 TTCTTATATATTA---TTATTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTA
98239090 TTCTTATATATTATTATTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTA
1 TTCTTATATATTATTATTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTA
* *
98239147 TTCTTA-GTATTATTCTTATTAGT
1 TTCTTATATATTATTATTATTAGT
98239170 CATTTTTCTT
Statistics
Matches: 78, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
56 15 0.19
57 50 0.64
60 13 0.17
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.63
Consensus pattern (57 bp):
TTCTTATATATTATTATTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTA
Found at i:98239148 original size:38 final size:37
Alignment explanation
Indices: 98239079--98239166 Score: 101
Period size: 38 Copynumber: 2.4 Consensus size: 37
98239069 TTTCTTTATT
*
98239079 GATTATTATTA-TTCTTATATATTATTATTATTAGTTA
1 GATTATTATTATTTCTTATATATTATTATTATT-CTTA
98239116 GATTATT-TTATTTCTT-TATTGATTATTATTATTCTTA
1 GATTATTATTATTTCTTATA-T-ATTATTATTATTCTTA
*
98239153 GTATTATTCTTATT
1 G-ATTATTATTATT
98239167 AGTCATTTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
36 5 0.11
37 17 0.38
38 18 0.40
39 5 0.11
ACGTcount: A:0.27, C:0.05, G:0.06, T:0.62
Consensus pattern (37 bp):
GATTATTATTATTTCTTATATATTATTATTATTCTTA
Found at i:98240800 original size:6 final size:6
Alignment explanation
Indices: 98240789--98240815 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
98240779 TGACCATTTG
98240789 TTTTAT TTTTAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT
98240816 CTTAGATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:98245224 original size:17 final size:17
Alignment explanation
Indices: 98245200--98245241 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
98245190 ATTGCATTTG
98245200 TTTATTTTT-TTATTGA
1 TTTATTTTTGTTATTGA
* *
98245216 TTTCTTTTTGTTATTTA
1 TTTATTTTTGTTATTGA
98245233 TTTATTTTT
1 TTTATTTTT
98245242 ATTTCTCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTATTTTTGTTATTGA
Found at i:98245232 original size:21 final size:21
Alignment explanation
Indices: 98245186--98245239 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
98245176 TGGTTTATCG
*
98245186 ATTTATTGCATTTGTTTATTTT
1 ATTTATTG-ATTTCTTTATTTT
98245208 -TTTATTGATTTCTTT-TTGTT
1 ATTTATTGATTTCTTTATT-TT
*
98245228 ATTTATTTATTT
1 ATTTATTGATTT
98245240 TTATTTCTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 2 0.07
20 9 0.32
21 17 0.61
ACGTcount: A:0.17, C:0.04, G:0.07, T:0.72
Consensus pattern (21 bp):
ATTTATTGATTTCTTTATTTT
Found at i:98254372 original size:10 final size:10
Alignment explanation
Indices: 98254357--98254381 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
98254347 TATTAAAATG
98254357 AATTTTAATT
1 AATTTTAATT
98254367 AATTTTAATT
1 AATTTTAATT
98254377 AATTT
1 AATTT
98254382 ATGATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
AATTTTAATT
Found at i:98269656 original size:15 final size:15
Alignment explanation
Indices: 98269636--98269665 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
98269626 CGAGAGAGAT
98269636 AATAATATAACTTAG
1 AATAATATAACTTAG
98269651 AATAATATAACTTAG
1 AATAATATAACTTAG
98269666 GGATTTCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (15 bp):
AATAATATAACTTAG
Found at i:98272362 original size:21 final size:20
Alignment explanation
Indices: 98272333--98272388 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
98272323 GTAGAGGTTT
*
98272333 ACACGCCCATGTGAAGGCTAC
1 ACACGCCCATGTGAAGG-GAC
*
98272354 ACATGCCCATGTGGAAGGGAC
1 ACACGCCCATGT-GAAGGGAC
*
98272375 ACACACCCATGTGA
1 ACACGCCCATGTGA
98272389 GTAGCCCATG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 2 0.07
21 23 0.77
22 5 0.17
ACGTcount: A:0.30, C:0.30, G:0.25, T:0.14
Consensus pattern (20 bp):
ACACGCCCATGTGAAGGGAC
Found at i:98275954 original size:13 final size:13
Alignment explanation
Indices: 98275936--98275969 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
98275926 TATTTTATTA
98275936 ATATTTTAATAAG
1 ATATTTTAATAAG
98275949 ATATTTTAATAAG
1 ATATTTTAATAAG
98275962 ATATTTTA
1 ATATTTTA
98275970 TTATTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (13 bp):
ATATTTTAATAAG
Found at i:98276252 original size:13 final size:13
Alignment explanation
Indices: 98276234--98276267 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
98276224 TATTTTATTA
*
98276234 ATATTTTAGTAAG
1 ATATTTTAATAAG
98276247 ATATTTTAATAAG
1 ATATTTTAATAAG
98276260 ATATTTTA
1 ATATTTTA
98276268 CTATTTTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (13 bp):
ATATTTTAATAAG
Found at i:98276253 original size:298 final size:301
Alignment explanation
Indices: 98275696--98276297 Score: 994
Period size: 298 Copynumber: 2.0 Consensus size: 301
98275686 TAGTGCAAAT
* * * *
98275696 ATTTTAAGGGTGGAATGATCTAGAAACTAAGGAAAATGGATGAATTAGGACTAAATTGAATAGGA
1 ATTTGAAGGGTAGAATGATCTACAAACTAAGAAAAATGGATGAATTAGGACTAAATTGAATAGGA
*
98275761 AAAGAATTATGAGGAACTAAATTATAATTTTATCAAATTATGTAATGATTCAATGATAAAATTTT
66 AAAGAATTATGAGG------ATCATAATTTTATCAAATTATGTAATGATTCAATGATAAAATTTT
*
98275826 AAAAGATCACAAAGGGCAAAATGGTCAATTGGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGT
125 AAAAGATCACAAAGGGCAAAATGGTCAACTGGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGT
98275891 TGATGATATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTT
190 TGATGATATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTT
* *
98275956 AATAAGATATTTTATTATTTTATTATTATTTATTAAATATAAAAGGA
255 AATAAGATATTTTACTATTTTACTATTATTTATTAAATATAAAAGGA
*
98276003 ATTTGAAGGGTAGAATGATCTACAAACTAAGAAAAATGGATGAATTGGGACTAAATTGAATAGGA
1 ATTTGAAGGGTAGAATGATCTACAAACTAAGAAAAATGGATGAATTAGGACTAAATTGAATAGGA
* *
98276068 AAAGAATTAT-A-G-TCGTAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTTAAAAGA
66 AAAGAATTATGAGGATCATAATTTTATCAAATTATGTAATGATTCAATGATAAAATTTTAAAAGA
* *
98276130 TCACAAAGGGCAAAATGTTCAACTGGAAGAGAGAGAAATCTAGAAAGTAATGATGATGTTGATGA
131 TCACAAAGGGCAAAATGGTCAACTGGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGTTGATGA
*
98276195 TATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAGTAAGATATTTTAATAAG
196 TATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTTAATAAG
*
98276260 ATATTTTACTATTTTACTATTATTTATTAAGTATAAAA
261 ATATTTTACTATTTTACTATTATTTATTAAATATAAAA
98276298 TGAAGGAAAG
Statistics
Matches: 280, Mismatches: 15, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
298 208 0.74
305 1 0.00
306 1 0.00
307 70 0.25
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (301 bp):
ATTTGAAGGGTAGAATGATCTACAAACTAAGAAAAATGGATGAATTAGGACTAAATTGAATAGGA
AAAGAATTATGAGGATCATAATTTTATCAAATTATGTAATGATTCAATGATAAAATTTTAAAAGA
TCACAAAGGGCAAAATGGTCAACTGGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGTTGATGA
TATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTTAATAAG
ATATTTTACTATTTTACTATTATTTATTAAATATAAAAGGA
Found at i:98278375 original size:24 final size:24
Alignment explanation
Indices: 98278347--98278398 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
98278337 TTAGTAGGTC
*
98278347 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATGCT
* *
98278371 AAATATATTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATGCT
98278395 AAAT
1 AAAT
98278399 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATGCT
Found at i:98282643 original size:40 final size:40
Alignment explanation
Indices: 98282586--98282663 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
98282576 TGCAATACCT
* * *
98282586 TATGGTGTGTAGGGATGGACGGGTCAATTTTATCCCCATA
1 TATGGTGTGCAGAGATGGACAGGTCAATTTTATCCCCATA
** *
98282626 TATGGTGTGCAGAGATGGGTAGGTCGATTTTATCCCCA
1 TATGGTGTGCAGAGATGGACAGGTCAATTTTATCCCCA
98282664 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.32
Consensus pattern (40 bp):
TATGGTGTGCAGAGATGGACAGGTCAATTTTATCCCCATA
Found at i:98289744 original size:40 final size:38
Alignment explanation
Indices: 98289694--98289787 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 38
98289684 TTTTAATGCA
*
98289694 ATCCCT-TATGGTGTGTAGGAATGGACGGGTCGATTTT
1 ATCCCTATATGGTGTGTAGGAATGGACGGATCGATTTT
** * **
98289731 ATCCCCATATATGGTGTACAGGGATGGGTGGATCGATTTT
1 AT-CCC-TATATGGTGTGTAGGAATGGACGGATCGATTTT
*
98289771 ATCCCTACATGGTGTGT
1 ATCCCTATATGGTGTGT
98289788 TGGGTTAGAC
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
37 2 0.04
38 12 0.27
39 4 0.09
40 27 0.60
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (38 bp):
ATCCCTATATGGTGTGTAGGAATGGACGGATCGATTTT
Found at i:98295019 original size:14 final size:14
Alignment explanation
Indices: 98295000--98295027 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
98294990 TAAATACTTG
98295000 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
98295014 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
98295028 CTTGCTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (14 bp):
ATTTGTTCTTAATT
Found at i:98295823 original size:80 final size:80
Alignment explanation
Indices: 98295728--98295888 Score: 313
Period size: 80 Copynumber: 2.0 Consensus size: 80
98295718 TAATTTTTAT
*
98295728 TACTTTAGCCATTTATTTTATTACAATTTAAATTTAAATTTAGTTTTGTTAATTTTACTAAATTT
1 TACTTTAGCCATTTATTTTATTAAAATTTAAATTTAAATTTAGTTTTGTTAATTTTACTAAATTT
98295793 TCTTTTGTTTTCTTC
66 TCTTTTGTTTTCTTC
98295808 TACTTTAGCCATTTATTTTATTAAAATTTAAATTTAAATTTAGTTTTGTTAATTTTACTAAATTT
1 TACTTTAGCCATTTATTTTATTAAAATTTAAATTTAAATTTAGTTTTGTTAATTTTACTAAATTT
98295873 TCTTTTGTTTTCTTC
66 TCTTTTGTTTTCTTC
98295888 T
1 T
98295889 GACAAGTTTT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.27, C:0.09, G:0.05, T:0.59
Consensus pattern (80 bp):
TACTTTAGCCATTTATTTTATTAAAATTTAAATTTAAATTTAGTTTTGTTAATTTTACTAAATTT
TCTTTTGTTTTCTTC
Found at i:98296004 original size:30 final size:30
Alignment explanation
Indices: 98295970--98296027 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
98295960 ACAGCTTGGA
98295970 GAAACCAAAGAGAAAAAAGGCGAAACCTTC
1 GAAACCAAAGAGAAAAAAGGCGAAACCTTC
98296000 GAAACCAAAGAGAAAAAAGGCGAAACCT
1 GAAACCAAAGAGAAAAAAGGCGAAACCT
98296028 AACCCGAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.55, C:0.19, G:0.21, T:0.05
Consensus pattern (30 bp):
GAAACCAAAGAGAAAAAAGGCGAAACCTTC
Found at i:98300832 original size:47 final size:47
Alignment explanation
Indices: 98300761--98301496 Score: 1240
Period size: 47 Copynumber: 15.6 Consensus size: 47
98300751 CCCTTCGGGA
* * * * * * *
98300761 CTTATCACATTTACACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
98300808 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
98300855 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
98300902 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98300949 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
98300996 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98301043 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
98301090 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98301139 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
98301186 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98301233 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
98301280 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98301329 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
98301376 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98301423 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98301470 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
98301497 TATTCAAATA
Statistics
Matches: 652, Mismatches: 31, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 561 0.86
49 90 0.14
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:98300839 original size:25 final size:25
Alignment explanation
Indices: 98300811--98300889 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
98300801 ACTCGGCCCT
98300811 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * *
98300836 ATCACAT-T-GGC-CATTCAGCCTT-
1 ATCACATATATACACTTTCA-CATTC
98300858 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
98300883 ATCACAT
1 ATCACAT
98300890 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 12 0.29
23 5 0.12
24 5 0.12
25 19 0.46
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:98301196 original size:190 final size:188
Alignment explanation
Indices: 98300761--98301496 Score: 1312
Period size: 190 Copynumber: 3.9 Consensus size: 188
98300751 CCCTTCGGGA
* * * * * * * *
98300761 CTTATCACATTTACACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
98300826 TTTCACATTCATCACATTGGCCATTCA-GCCTTATCACATATATACACTTTCACATTCATCACAT
66 TTTCACATTCATCACATCGGCTATT-AGGCCTTATCACATATATACACTTTCACATTCATCACAT
98300890 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
130 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
98300949 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
98301014 TTTCACATTCATCACATCAGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
98301079 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
98301139 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
98301204 TTTCACATTCATCACATCGACTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
98301269 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
98301329 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
98301394 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
98301459 GGCCATTAGGCCTTATCACATATATACACTTTCACATT
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATT
98301497 TATTCAAATA
Statistics
Matches: 531, Mismatches: 14, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
187 1 0.00
188 155 0.29
190 375 0.71
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:98316450 original size:29 final size:30
Alignment explanation
Indices: 98316350--98316496 Score: 126
Period size: 30 Copynumber: 5.0 Consensus size: 30
98316340 CAGTTACATC
98316350 GATGGTCATCACCATCCCTTTTCATAATTT
1 GATGGTCATCACCATCCCTTTTCATAATTT
* * *
98316380 GATAGCCGA--AGCTATCCCTTTTCATAATTT
1 GATGGTC-ATCA-CCATCCCTTTTCATAATTT
** *
98316410 GATGGTTGTCACCATCCCTTTTCAT-AGTT
1 GATGGTCATCACCATCCCTTTTCATAATTT
*
98316439 GATGGTCATCACCAT-CATTTTCCATAATTT
1 GATGGTCATCACCATCCCTTTT-CATAATTT
* * *
98316469 GATAGTGA--AGCTATCCCTTTTCATAATT
1 GATGGTCATCA-CCATCCCTTTTCATAATT
98316497 CAGTGATCGT
Statistics
Matches: 92, Mismatches: 17, Indels: 17
0.73 0.13 0.13
Matches are distributed among these distances:
28 6 0.07
29 30 0.33
30 54 0.59
31 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.39
Consensus pattern (30 bp):
GATGGTCATCACCATCCCTTTTCATAATTT
Found at i:98330362 original size:17 final size:17
Alignment explanation
Indices: 98330330--98330362 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
98330320 TAAAAAAATC
98330330 ATATTTTTTTATATTTA
1 ATATTTTTTTATATTTA
98330347 ATATATTTTTTA-ATTT
1 ATAT-TTTTTTATATTT
98330363 CAAAATACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
ATATTTTTTTATATTTA
Found at i:98330667 original size:14 final size:15
Alignment explanation
Indices: 98330648--98330704 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
98330638 AATCTTTAAG
98330648 GATATG-CAATCTTA
1 GATATGACAATCTTA
98330662 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
98330679 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
98330698 GATATGA
1 GATATGA
98330705 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:98330689 original size:36 final size:38
Alignment explanation
Indices: 98330648--98330726 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
98330638 AATCTTTAAG
98330648 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
98330684 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
98330724 GAT
1 GAT
98330727 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:98330695 original size:19 final size:19
Alignment explanation
Indices: 98330648--98330726 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
98330638 AATCTTTAAG
98330648 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98330667 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98330684 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98330703 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
98330724 GAT
1 GAT
98330727 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:98338247 original size:43 final size:43
Alignment explanation
Indices: 98338191--98338305 Score: 132
Period size: 38 Copynumber: 2.8 Consensus size: 43
98338181 AATTCATCAC
* *
98338191 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
* ** * *
98338234 CTTATCTGCCTAAGTAGTAAGGTAACAGG-----TTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
98338272 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
98338306 GTATAGCAGA
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
38 32 0.58
43 23 0.42
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
Found at i:98338693 original size:175 final size:174
Alignment explanation
Indices: 98338390--98339244 Score: 1001
Period size: 175 Copynumber: 4.9 Consensus size: 174
98338380 GAACAAATCG
* * * *
98338390 AAGA-AACAGATTTGGCATCTCCATACTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACC
1 AAGATAACAGATCTGGCATCTCCAT-TTCGACGGAGAGCAGGT-----ACATAGCAGATCTAACC
** * * *
98338454 TTTTGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATCCCTGTGTTTACAGGGAACAA
60 TTCAGATATTTT-AC-T-GAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAA
* * * *
98338519 ATCGAAGACATAGCAGATCTGATTTTCGGATGTTTTCACACCAAAGAAGATCC
122 ATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
*
98338572 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGTAGGTACATAGCAGATCTAACCTTCAGA
1 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
* *
98338637 TATTTATACTGAAGCAGATCCAAGATGATTTGACATTCTTGTGTTTACAAGGAACAAATCGAAGA
66 TATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA
98338702 CATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
130 CATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
* * * *
98338747 AAGATAACAGATCTGGCATCTCTATTTCGACGGAGAGCATGCACATAGCAGGTCTAACCTTCAGA
1 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
* * * * * *
98338812 TTTTTATATTAAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAACAAATCAAAGA
66 TATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA
98338877 CATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
130 CATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
* *
98338922 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGAGCTAACCTTCAGA
1 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
* * *
98338987 TGATTTTACTGAAACAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGA
66 T-ATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA
* * * * * **
98339052 CACAACAGATTTGGCTTTCACG-TGTT-T-ACGCTGAAGCAGATCC
130 CATAGCAGATTTGACTTTC-GGATGTTCTCACACCAAAGCAGATCC
* ** * * * * *
98339095 AAGAT----GATTTGGCAT-TCTTGTGTTTGCAAGGAACAAATCAAAG-ACATAGCAGATCTAAC
1 AAGATAACAGATCTGGCATCTC-CAT-TTCG-ACGG---AGAGC-AGGTACATAGCAGATCTAAC
* *
98339154 CTTCAGATGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAA
59 CTTCAGAT-ATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAA
* *
98339219 TCGAAGACACAGCAGATTTGGCTTTC
123 TCGAAGACATAGCAGATTTGACTTTC
98339245 ACGTGTTTAC
Statistics
Matches: 601, Mismatches: 61, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
168 2 0.00
169 10 0.02
170 3 0.00
171 3 0.00
173 18 0.03
174 108 0.18
175 388 0.65
176 5 0.01
177 26 0.04
178 1 0.00
182 18 0.03
183 19 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (174 bp):
AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
TATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGAC
ATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
Found at i:98339094 original size:87 final size:87
Alignment explanation
Indices: 98338995--98339314 Score: 439
Period size: 87 Copynumber: 3.7 Consensus size: 87
98338985 GATGATTTTA
* * *
98338995 CTGAAACAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAACAG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAG
98339060 ATTTGGCTTTCACGTGTTTACG
66 ATTTGGCTTTCACGTGTTTACG
* ** * *
98339082 CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTGCAAGGAACAAATCAAAGACATAGCAG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAG
* ** *
98339147 ATCTAACCTTCA-GATGATTTTA--
66 ATTTGGCTTTCACG-TG--TTTACG
*
98339169 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAG
98339234 ATTTGGCTTTCACGTGTTTACG
66 ATTTGGCTTTCACGTGTTTACG
* * * *
98339256 CTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAGATTGAAGACA
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACA
98339315 TAGTAGATCT
Statistics
Matches: 200, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
85 4 0.02
86 1 0.00
87 190 0.95
88 1 0.00
89 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (87 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAG
ATTTGGCTTTCACGTGTTTACG
Found at i:98339351 original size:174 final size:174
Alignment explanation
Indices: 98338964--98339360 Score: 582
Period size: 174 Copynumber: 2.3 Consensus size: 174
98338954 GAGAGCAGAT
* * ** *
98338964 ACATAGCAGAGCTAACCTTCAGATGATTTTACTGAAACAGATCCAAGATGATTTGGCATCCTTGT
1 ACATAGCAGATCTAACATTCAGATGATTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
98339029 GTTCACAAGGAGCAAATCGAAGACACAACAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATC
66 GTTCACAAGGAGCAAATCGAAGACACAACAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATC
* *
98339094 CAAGATGATTTGGCATTCTTGTGTTTGCAAGGAACAAATCAAAG
131 CAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCAAAG
* **
98339138 ACATAGCAGATCTAACCTTCAGATGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
1 ACATAGCAGATCTAACATTCAGATGATTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
* *
98339203 GTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGTAGATC
66 GTTCACAAGGAGCAAATCGAAGACACAACAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATC
* **
98339268 CAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAGATTGAAG
131 CAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCAAAG
* * * * *
98339312 ACATAGTAGATCTGACATTTATG-TGCTTACAGC-GAAGCAGATCAAAGAT
1 ACATAGCAGATCTAACATTCA-GATGATTACA-CTGAAGCAGATCCAAGAT
98339361 TTTAACATGG
Statistics
Matches: 204, Mismatches: 17, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
174 202 0.99
175 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (174 bp):
ACATAGCAGATCTAACATTCAGATGATTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
GTTCACAAGGAGCAAATCGAAGACACAACAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATC
CAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCAAAG
Found at i:98339354 original size:87 final size:87
Alignment explanation
Indices: 98338995--98339360 Score: 436
Period size: 87 Copynumber: 4.2 Consensus size: 87
98338985 GATGATTTTA
* * *
98338995 CTGAAACAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAACAG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAG
* *
98339060 ATTTGGCTTTCACGTGTTTACG
66 ATCTGACTTTCACGTGTTTACG
* ** * *
98339082 CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTGCAAGGAACAAATCAAAGACATAGCAG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAG
* *
98339147 ATCTAACCTTCA-GATGATTTTA--
66 ATCTGACTTTCACG-TG--TTTACG
*
98339169 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAG
* *
98339234 ATTTGGCTTTCACGTGTTTACG
66 ATCTGACTTTCACGTGTTTACG
* * * * * *
98339256 CTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAGATTGAAGACATAGTAG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAG
* *
98339321 ATCTGACATTT-ATGTGCTTACAG
66 ATCTGAC-TTTCACGTGTTTAC-G
*
98339344 C-GAAGCAGATCAAAGAT
1 CTGAAGCAGATCCAAGAT
98339361 TTTAACATGG
Statistics
Matches: 236, Mismatches: 35, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
85 4 0.02
86 1 0.00
87 221 0.94
88 6 0.03
89 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (87 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAG
ATCTGACTTTCACGTGTTTACG
Found at i:98339929 original size:14 final size:15
Alignment explanation
Indices: 98339910--98339966 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
98339900 AATCTTTAAG
98339910 GATATG-CAATCTTA
1 GATATGACAATCTTA
98339924 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
98339941 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
98339960 GATATGA
1 GATATGA
98339967 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:98339951 original size:36 final size:38
Alignment explanation
Indices: 98339910--98339988 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
98339900 AATCTTTAAG
98339910 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
98339946 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
98339986 GAT
1 GAT
98339989 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:98339957 original size:19 final size:19
Alignment explanation
Indices: 98339910--98339988 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
98339900 AATCTTTAAG
98339910 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98339929 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98339946 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98339965 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
98339986 GAT
1 GAT
98339989 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:98343861 original size:79 final size:79
Alignment explanation
Indices: 98343730--98343879 Score: 291
Period size: 79 Copynumber: 1.9 Consensus size: 79
98343720 AGTCTGCTCT
98343730 GTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGA
1 GTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGA
98343795 GGTTTTTCTACTCC
66 GGTTTTTCTACTCC
*
98343809 GTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGTTTTTTACAGTTGGTTCTTTGTGTCATTAGA
1 GTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGA
98343874 GGTTTT
66 GGTTTT
98343880 CTTGGTGCCG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 70 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (79 bp):
GTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGA
GGTTTTTCTACTCC
Found at i:98343915 original size:79 final size:79
Alignment explanation
Indices: 98343741--98343915 Score: 201
Period size: 79 Copynumber: 2.2 Consensus size: 79
98343731 TCATAGCCAG
* *
98343741 ATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGAGGTTTTTCTAC
1 ATTTACTCTAGAAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGAGGTTTTTCTAC
* * * *
98343806 TCCGTCATAGCCAG
66 TCCGACAAAGCAAA
* * * *
98343820 ATTTAGTCTAGCAAAAGTCTAGGTTTTTTACAGTTGGTTCTTTGTGTCATTAGAGG-TTTTCTTG
1 ATTTACTCTAGAAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGAGGTTTTTC-TA
* *
98343884 GTGCCGACAAAGTAAA
65 CT-CCGACAAAGCAAA
*
98343900 ATTT-CTTTAGAAAAAG
1 ATTTACTCTAGAAAAAG
98343916 GGATATTAGA
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
78 5 0.06
79 66 0.80
80 12 0.14
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.40
Consensus pattern (79 bp):
ATTTACTCTAGAAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGAGGTTTTTCTAC
TCCGACAAAGCAAA
Found at i:98348388 original size:872 final size:872
Alignment explanation
Indices: 98346704--98348448 Score: 3490
Period size: 872 Copynumber: 2.0 Consensus size: 872
98346694 GTATCTTTTG
98346704 TATTTATGTTTTTTATATTTTGTATGCATAGCAAAATTGTGACAAGCAAAGATTAGCTCATTGAT
1 TATTTATGTTTTTTATATTTTGTATGCATAGCAAAATTGTGACAAGCAAAGATTAGCTCATTGAT
98346769 TGTCTAAAGTTCAAACTGAAGATAAGTGGCATTGTAAAGAATATTTACAGTGTAAGAAAGACAAC
66 TGTCTAAAGTTCAAACTGAAGATAAGTGGCATTGTAAAGAATATTTACAGTGTAAGAAAGACAAC
98346834 TTACTTTAATAAATAATCTAAATGAACCCATAATCCTGTAAAATAATCAAAGTGAGCATTTGATT
131 TTACTTTAATAAATAATCTAAATGAACCCATAATCCTGTAAAATAATCAAAGTGAGCATTTGATT
98346899 CAAATACTGAGAAGGATTATTATGTTGTCTACAATTTCAATTGGGGAGATGGCTAGTATTGGTTA
196 CAAATACTGAGAAGGATTATTATGTTGTCTACAATTTCAATTGGGGAGATGGCTAGTATTGGTTA
98346964 TTGGAGCAGTTGACTCCATGAGTAGAGACACAGATGTATGCATTGGTAAAATGATATATTGGATT
261 TTGGAGCAGTTGACTCCATGAGTAGAGACACAGATGTATGCATTGGTAAAATGATATATTGGATT
98347029 GGACCCAAGATGAATTAATTCTGAACCCATTTGTGAATTAATTCACTTGTGACGTTCATGGTGTG
326 GGACCCAAGATGAATTAATTCTGAACCCATTTGTGAATTAATTCACTTGTGACGTTCATGGTGTG
98347094 ATTTACCTAAATCCTAAATTAGTCACTAACCATGCGTCTGCAACTTATGTGCTTTGATATAAGTG
391 ATTTACCTAAATCCTAAATTAGTCACTAACCATGCGTCTGCAACTTATGTGCTTTGATATAAGTG
98347159 GATGCTTATGCTCTAAAGAAGATCGAGCCCATAGCCAGTATGTTGGCTACATAACTTGTGTATGG
456 GATGCTTATGCTCTAAAGAAGATCGAGCCCATAGCCAGTATGTTGGCTACATAACTTGTGTATGG
98347224 CATGAGTTCACTAAAAACAATGGAATTCATAGCTCAATTAAAGAGTTAATGATATCCTCTCAATG
521 CATGAGTTCACTAAAAACAATGGAATTCATAGCTCAATTAAAGAGTTAATGATATCCTCTCAATG
98347289 GCATTGTGTGGGTTGATAAATATAAAATGTAGCCACGGGTTGTTCGTTCTCGAACGAGCAATTTA
586 GCATTGTGTGGGTTGATAAATATAAAATGTAGCCACGGGTTGTTCGTTCTCGAACGAGCAATTTA
98347354 TTATAGTCATTTATTGATAGTGGTCATATTAATCATTAAGAAAACACGATGGTAACAATAAGATA
651 TTATAGTCATTTATTGATAGTGGTCATATTAATCATTAAGAAAACACGATGGTAACAATAAGATA
98347419 AAATAGAATTGTATTGAGTGAAGATGTTTAACTCAAAAAAGTCAAGGATATCATATGAGGGTAAC
716 AAATAGAATTGTATTGAGTGAAGATGTTTAACTCAAAAAAGTCAAGGATATCATATGAGGGTAAC
98347484 ACACACATGACGAGGTCATTGGACAAAACAGTTGGATGAATTAATTTCGTAAAGAGTATACAATA
781 ACACACATGACGAGGTCATTGGACAAAACAGTTGGATGAATTAATTTCGTAAAGAGTATACAATA
98347549 AGGAGTTTTCAATCGTGGTACTTCTTA
846 AGGAGTTTTCAATCGTGGTACTTCTTA
98347576 TATTTATGTTTTTTATATTTTGTATGCATAGCAAAATTGTGACAAGCAAAGATTAGCTCATTGAT
1 TATTTATGTTTTTTATATTTTGTATGCATAGCAAAATTGTGACAAGCAAAGATTAGCTCATTGAT
98347641 TGTCTAAAGTTCAAACTGAAGATAAGTGGCATTGTAAAGAATATTTACAGTGTAAGAAAGACAAC
66 TGTCTAAAGTTCAAACTGAAGATAAGTGGCATTGTAAAGAATATTTACAGTGTAAGAAAGACAAC
98347706 TTACTTTAATAAATAATCTAAATGAACCCATAATCCTGTAAAATAATCAAAGTGAGCATTTGATT
131 TTACTTTAATAAATAATCTAAATGAACCCATAATCCTGTAAAATAATCAAAGTGAGCATTTGATT
98347771 CAAATACTGAGAAGGATTATTATGTTGTCTACAATTTCAATTGGGGAGATGGCTAGTATTGGTTA
196 CAAATACTGAGAAGGATTATTATGTTGTCTACAATTTCAATTGGGGAGATGGCTAGTATTGGTTA
98347836 TTGGAGCAGTTGACTCCATGAGTAGAGACACAGATGTATGCATTGGTAAAATGATATATTGGATT
261 TTGGAGCAGTTGACTCCATGAGTAGAGACACAGATGTATGCATTGGTAAAATGATATATTGGATT
98347901 GGACCCAAGATGAATTAATTCTGAACCCATTTGTGAATTAATTCACTTGTGACGTTCATGGTGTG
326 GGACCCAAGATGAATTAATTCTGAACCCATTTGTGAATTAATTCACTTGTGACGTTCATGGTGTG
98347966 ATTTACCTAAATCCTAAATTAGTCACTAACCATGCGTCTGCAACTTATGTGCTTTGATATAAGTG
391 ATTTACCTAAATCCTAAATTAGTCACTAACCATGCGTCTGCAACTTATGTGCTTTGATATAAGTG
98348031 GATGCTTATGCTCTAAAGAAGATCGAGCCCATAGCCAGTATGTTGGCTACATAACTTGTGTATGG
456 GATGCTTATGCTCTAAAGAAGATCGAGCCCATAGCCAGTATGTTGGCTACATAACTTGTGTATGG
98348096 CATGAGTTCACTAAAAACAATGGAATTCATAGCTCAATTAAAGAGTTAATGATATCCTCTCAATG
521 CATGAGTTCACTAAAAACAATGGAATTCATAGCTCAATTAAAGAGTTAATGATATCCTCTCAATG
98348161 GCATTGTGTGGGTTGATAAATATAAAATGTAGCCACGGGTTGTTCGTTCTCGAACGAGCAATTTA
586 GCATTGTGTGGGTTGATAAATATAAAATGTAGCCACGGGTTGTTCGTTCTCGAACGAGCAATTTA
98348226 TTATAGTCATTTATTGATAGTGGTCATATTAATCATTAAGAAAACACGATGGTAACAATAAGATA
651 TTATAGTCATTTATTGATAGTGGTCATATTAATCATTAAGAAAACACGATGGTAACAATAAGATA
98348291 AAATAGAATTGTATTGAGTGAAGATGTTTAACTCAAAAAAGTCAAGGATATCATATGAGGGTAAC
716 AAATAGAATTGTATTGAGTGAAGATGTTTAACTCAAAAAAGTCAAGGATATCATATGAGGGTAAC
98348356 ACACACATGACGAGGTCATTGGACAAAACAGTTGGATGAATTAATTTCGTAAAGAGTATACAATA
781 ACACACATGACGAGGTCATTGGACAAAACAGTTGGATGAATTAATTTCGTAAAGAGTATACAATA
98348421 AGGAGTTTTCAATCGTGGTACTTCTTA
846 AGGAGTTTTCAATCGTGGTACTTCTTA
98348448 T
1 T
98348449 GGACTGACTC
Statistics
Matches: 873, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
872 873 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (872 bp):
TATTTATGTTTTTTATATTTTGTATGCATAGCAAAATTGTGACAAGCAAAGATTAGCTCATTGAT
TGTCTAAAGTTCAAACTGAAGATAAGTGGCATTGTAAAGAATATTTACAGTGTAAGAAAGACAAC
TTACTTTAATAAATAATCTAAATGAACCCATAATCCTGTAAAATAATCAAAGTGAGCATTTGATT
CAAATACTGAGAAGGATTATTATGTTGTCTACAATTTCAATTGGGGAGATGGCTAGTATTGGTTA
TTGGAGCAGTTGACTCCATGAGTAGAGACACAGATGTATGCATTGGTAAAATGATATATTGGATT
GGACCCAAGATGAATTAATTCTGAACCCATTTGTGAATTAATTCACTTGTGACGTTCATGGTGTG
ATTTACCTAAATCCTAAATTAGTCACTAACCATGCGTCTGCAACTTATGTGCTTTGATATAAGTG
GATGCTTATGCTCTAAAGAAGATCGAGCCCATAGCCAGTATGTTGGCTACATAACTTGTGTATGG
CATGAGTTCACTAAAAACAATGGAATTCATAGCTCAATTAAAGAGTTAATGATATCCTCTCAATG
GCATTGTGTGGGTTGATAAATATAAAATGTAGCCACGGGTTGTTCGTTCTCGAACGAGCAATTTA
TTATAGTCATTTATTGATAGTGGTCATATTAATCATTAAGAAAACACGATGGTAACAATAAGATA
AAATAGAATTGTATTGAGTGAAGATGTTTAACTCAAAAAAGTCAAGGATATCATATGAGGGTAAC
ACACACATGACGAGGTCATTGGACAAAACAGTTGGATGAATTAATTTCGTAAAGAGTATACAATA
AGGAGTTTTCAATCGTGGTACTTCTTA
Found at i:98349237 original size:20 final size:19
Alignment explanation
Indices: 98349202--98349276 Score: 68
Period size: 20 Copynumber: 4.1 Consensus size: 19
98349192 TATTCCAAAA
*
98349202 ATAATATT-ATTTTAATAGT
1 ATAATATTAAATTTAATA-T
98349221 ATAATATTAAATTTAAT-T
1 ATAATATTAAATTTAATAT
* *
98349239 -TAATATTAAATTGATTATT
1 ATAATATTAAATTTAATA-T
*
98349258 TTAATATTAAA-TTAATAT
1 ATAATATTAAATTTAATAT
98349276 A
1 A
98349277 ATATTTATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
17 14 0.30
18 2 0.04
19 13 0.28
20 17 0.37
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
ATAATATTAAATTTAATAT
Found at i:98349247 original size:11 final size:11
Alignment explanation
Indices: 98349203--98349307 Score: 55
Period size: 11 Copynumber: 9.8 Consensus size: 11
98349193 ATTCCAAAAA
*
98349203 TAATATTATTT
1 TAATATTAATT
98349214 TAATAGTATAATAT
1 TAATA-T-TAAT-T
98349228 TAA-ATTTAATT
1 TAATA-TTAATT
*
98349239 TAATATTAAAT
1 TAATATTAATT
* *
98349250 T--GATTATTT
1 TAATATTAATT
*
98349259 TAATATTAAAT
1 TAATATTAATT
98349270 TAATA-TAATAT
1 TAATATTAAT-T
*
98349281 T--TA-TCATT
1 TAATATTAATT
98349289 T-ATATTAATT
1 TAATATTAATT
98349299 TAATATTAA
1 TAATATTAA
98349308 AGTTGTTAAG
Statistics
Matches: 72, Mismatches: 12, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
8 2 0.03
9 13 0.18
10 8 0.11
11 34 0.47
12 6 0.08
13 5 0.07
14 4 0.06
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (11 bp):
TAATATTAATT
Found at i:98349281 original size:24 final size:24
Alignment explanation
Indices: 98349254--98349305 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
98349244 TTAAATTGAT
98349254 TATTT-TAATATTAAATTAATATAA
1 TATTTATAAT-TTAAATTAATATAA
* * *
98349278 TATTTATCATTTATATTAATTTAA
1 TATTTATAATTTAAATTAATATAA
98349302 TATT
1 TATT
98349306 AAAGTTGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
TATTTATAATTTAAATTAATATAA
Found at i:98350229 original size:31 final size:31
Alignment explanation
Indices: 98350194--98350254 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 31
98350184 TATTATATAT
98350194 AAATAT-TCAATCGGTTCGATTAATTTTTTAG
1 AAATATATCAATCGG-TCGATTAATTTTTTAG
*
98350225 AAATATAAATTAATCGGTCGATTAATTTTT
1 AAATAT--ATCAATCGGTCGATTAATTTTT
98350255 GATATGTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 6 0.23
33 13 0.50
34 7 0.27
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (31 bp):
AAATATATCAATCGGTCGATTAATTTTTTAG
Found at i:98353908 original size:34 final size:36
Alignment explanation
Indices: 98353865--98353944 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 36
98353855 AATACTAAAT
*
98353865 ATTAAATTA-GA-G-TTTAGGGTATTAGGGTTAATTG
1 ATTAAATTAGGATGATTTAGGGT-TTAAGGTTAATTG
98353899 ATTAAATTAGGGATTGATTTAGGGTTTAAGGTTAATTG
1 ATTAAATTA-GGA-TGATTTAGGGTTTAAGGTTAATTG
98353937 ATTAAATT
1 ATTAAATT
98353945 TAGGGTTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
34 9 0.22
36 2 0.05
38 21 0.52
39 8 0.20
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (36 bp):
ATTAAATTAGGATGATTTAGGGTTTAAGGTTAATTG
Found at i:98353951 original size:20 final size:20
Alignment explanation
Indices: 98353886--98353958 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
98353876 GTTTAGGGTA
98353886 TTAGGGTTAATTGATTAAA-
1 TTAGGGTTAATTGATTAAAT
**
98353905 TTAGGG---ATTGATTTAGGGT
1 TTAGGGTTAATTGA-TTA-AAT
*
98353924 TTAAGGTTAATTGATTAAAT
1 TTAGGGTTAATTGATTAAAT
98353944 TTAGGGTTAATTGAT
1 TTAGGGTTAATTGAT
98353959 ACATAATGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
16 5 0.12
17 3 0.07
19 11 0.26
20 15 0.36
21 3 0.07
22 5 0.12
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.44
Consensus pattern (20 bp):
TTAGGGTTAATTGATTAAAT
Found at i:98354728 original size:126 final size:126
Alignment explanation
Indices: 98354515--98354883 Score: 549
Period size: 126 Copynumber: 2.9 Consensus size: 126
98354505 AATTCTGAGC
* * * * *
98354515 AGACGTTTCTAAACAAATAGCGTCGAAAAACGCTTCAAGCAGGATGCATTATCAGCAAAATTTCT
1 AGACATTTCTGAACAAATAGTGTCG-AAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCT
*
98354580 GGAAAAAGCTCCCACATGGACGCTCTTTTGTTACAATAGTTCGTAGAAAAATAATTCTAAAT
65 GGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAAAATAATTCTAAAT
*
98354642 AGATATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTG
1 AGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTG
* * *
98354707 GAAAAAGCTCCCACATGGACGCTCTTTTACTACAATAGTTCGTAGAAAAATAATTCTGAGT
66 GAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAAAATAATTCTAAAT
* * * * * * * *
98354768 AGACGTTTTTGAACAAATATTGTCGAAAAAGCTTCAAGCATGATGCACTGTCATCAAAACTTCAG
1 AGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTG
* *
98354833 AAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAAT
66 GAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAAAAT
98354884 GAGGCTATAA
Statistics
Matches: 220, Mismatches: 22, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
126 199 0.90
127 21 0.10
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (126 bp):
AGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTG
GAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAAAATAATTCTAAAT
Found at i:98358120 original size:21 final size:21
Alignment explanation
Indices: 98358082--98358121 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
98358072 TCGATCAGCT
* *
98358082 TCTGGTAGGGGTTGTGGTTCC
1 TCTGGTAGGGGATCTGGTTCC
98358103 TCTGGTAGGGGATCTGGTT
1 TCTGGTAGGGGATCTGGTT
98358122 GTGGGTGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.12, G:0.42, T:0.38
Consensus pattern (21 bp):
TCTGGTAGGGGATCTGGTTCC
Found at i:98360056 original size:48 final size:46
Alignment explanation
Indices: 98359988--98360115 Score: 168
Period size: 48 Copynumber: 2.7 Consensus size: 46
98359978 ATGCAAACAT
**
98359988 CATAAATGAAAAAAAAATCAAGCAGTATTGAAATTGTAATTATAA-TTG
1 CATAAATG-AAAAAAAATCAAATAGTATTGAAATT-TAATTA-AATTTG
*
98360036 CATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAA-AAAAAATCAAATAGTATTG-AAATTTAATTAAATTTG
*
98360084 CATAAATTAAAAAAAATCAAATAGTATTGAAA
1 CATAAATGAAAAAAAATCAAATAGTATTGAAA
98360116 AATTAAAATT
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
46 3 0.04
47 22 0.31
48 42 0.58
49 5 0.07
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.30
Consensus pattern (46 bp):
CATAAATGAAAAAAAATCAAATAGTATTGAAATTTAATTAAATTTG
Found at i:98360275 original size:11 final size:11
Alignment explanation
Indices: 98360256--98360287 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
98360246 TTTTAAACAA
*
98360256 AGAAATTTGAT
1 AGAATTTTGAT
98360267 AGAATTTTGAT
1 AGAATTTTGAT
98360278 AGAATTTTGA
1 AGAATTTTGA
98360288 GAAAAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (11 bp):
AGAATTTTGAT
Found at i:98375398 original size:46 final size:44
Alignment explanation
Indices: 98375191--98375498 Score: 165
Period size: 46 Copynumber: 6.6 Consensus size: 44
98375181 ATGCTGACAT
* * *
98375191 CATGTCCCAGACATGGTCTTACACTAGCTCTCATTTGTCGGTGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-A--TCTC-ATGCCGATG
* * * * * * * *
98375240 TAATGTCCCAGACAGGTCTTACACT-GACAC-AACACAAGCTGACG
1 -CATGTCCCAGACATGTCTTACACTAG-CTCTATCTCATGCCGATG
* * * *
98375284 CCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACAAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGC---TCTATCTC-ATGCCGATG
* * *
98375333 C-TTTCCCAGACATGCCTTACACTAGCTCTAGTCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTA-TCTC-ATGCCGATG
* * * *
98375378 CAAGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-T--CTATCTC-ATGCCGATG
* * * *
98375426 CATGTCCCAAACACGTCTTACACTGGCTCTTATGCT-ATGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTC-TAT-CTCAT-GCCGATG
98375472 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
98375499 ACACATATCA
Statistics
Matches: 200, Mismatches: 43, Indels: 34
0.72 0.16 0.12
Matches are distributed among these distances:
44 31 0.16
45 15 0.08
46 54 0.27
47 27 0.14
48 41 0.20
49 20 0.10
50 12 0.06
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTATCTCATGCCGATG
Found at i:98375483 original size:94 final size:92
Alignment explanation
Indices: 98375285--98375498 Score: 243
Period size: 94 Copynumber: 2.3 Consensus size: 92
98375275 AAGCTGACGC
* ** * * *
98375285 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACAAGGCCGATGCTTTCCCAGACATGCCT
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGCCGATGCTGTCCCAAACACGCCT
98375350 TACACTAGCTCTAGTCTCAATGCCAATG
66 TACACTAGCTCTAGTCT-AATGCCAATG
* * * * *
98375378 CAAGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCCAAACACGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGCCGATGC-TGTCCCAAACACGCC
* **
98375443 TTACACTGGCTCTTA-TGCT-ATGGCTGATG
65 TTACACTAGCTC-TAGT-CTAAT-GCCAATG
98375472 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
98375499 ACACATATCA
Statistics
Matches: 101, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
93 44 0.44
94 53 0.52
95 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGCCGATGCTGTCCCAAACACGCCT
TACACTAGCTCTAGTCTAATGCCAATG
Found at i:98377349 original size:23 final size:22
Alignment explanation
Indices: 98377319--98377362 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
98377309 TATCAATTCA
*
98377319 TAAATAAATTCATACCAAAACT
1 TAAATAAAATCATACCAAAACT
*
98377341 TAAACTAAAATCATACCTAAAC
1 TAAA-TAAAATCATACCAAAAC
98377363 ATACGATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (22 bp):
TAAATAAAATCATACCAAAACT
Found at i:98378046 original size:42 final size:43
Alignment explanation
Indices: 98377947--98378053 Score: 130
Period size: 43 Copynumber: 2.5 Consensus size: 43
98377937 AACATATATA
98377947 ATGCCAATGTCCCAGACATGGTATTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTATTACATGTAATCAAACATCG
* * * * *
98377990 ATGCCACTGTCCCAGATA-GTGTCTTACATG-AAGTCAGATA-CG
1 ATGCCAATGTCCCAGACATG-GTATTACATGTAA-TCAAACATCG
98378032 ATGCCAATGTCCCAGACATGGT
1 ATGCCAATGTCCCAGACATGGT
98378054 CGTAAAGCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
42 23 0.43
43 31 0.57
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTATTACATGTAATCAAACATCG
Found at i:98381890 original size:47 final size:47
Alignment explanation
Indices: 98381815--98382034 Score: 225
Period size: 47 Copynumber: 4.7 Consensus size: 47
98381805 TGGGTAAGGT
*
98381815 GCCGGTGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * * * * *
98381862 GTCGATGCCATGTCACATACATGATCTTACACTGACT-ATCATCTCGCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AA
* * *
98381910 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * ***
98381955 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATACTGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCAA
*
98382004 GCCGATG-CATGTGCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
98382035 AGCCAACAAC
Statistics
Matches: 143, Mismatches: 23, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 34 0.24
47 76 0.53
48 30 0.21
49 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
Found at i:98381984 original size:94 final size:93
Alignment explanation
Indices: 98381823--98382037 Score: 288
Period size: 94 Copynumber: 2.3 Consensus size: 93
98381813 GTGCCGGTGC
* * *
98381823 CATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCACATACATGATC
1 CATGTCCCAGACAT-GTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCACAGACATGATC
98381888 TTACACTGACTATCAT-CTCGCAGCCGATG
65 TTACACTGACTATCATACT-GCAGCCGATG
* * * *
98381917 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA-GCCGATGCCATGTCACAGACATGATC
* * **
98381982 TTACACTGCCTCTCATACTGTGGCCGATG
65 TTACACTGACTATCATACTGCAGCCGATG
*
98382011 CATGTGCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
98382038 CAACAACAAC
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
93 21 0.20
94 84 0.79
95 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCACAGACATGATCT
TACACTGACTATCATACTGCAGCCGATG
Found at i:98393911 original size:20 final size:19
Alignment explanation
Indices: 98393876--98393924 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
98393866 TGAATCCTCC
98393876 TATTTT-TTTATTTATTCT
1 TATTTTCTTTATTTATTCT
*
98393894 TATTTTCTTTAGTTTATTTT
1 TATTTTCTTTA-TTTATTCT
98393914 TATTTTTCTTT
1 TA-TTTTCTTT
98393925 TAATTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 6 0.22
19 4 0.15
20 9 0.33
21 8 0.30
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (19 bp):
TATTTTCTTTATTTATTCT
Found at i:98393931 original size:17 final size:17
Alignment explanation
Indices: 98393906--98393966 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
98393896 TTTTCTTTAG
*
98393906 TTTATTTTTATTTTTCT
1 TTTAATTTTATTTTTCT
98393923 TTTAATTTT-TATTTTCAT
1 TTTAATTTTAT-TTTTC-T
* * *
98393941 TTCAATTTTATTATTAT
1 TTTAATTTTATTTTTCT
98393958 TTT-ATTTTA
1 TTTAATTTTA
98393967 AAAGACATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
16 7 0.19
17 16 0.44
18 12 0.33
19 1 0.03
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTAATTTTATTTTTCT
Found at i:98393932 original size:7 final size:6
Alignment explanation
Indices: 98393876--98393965 Score: 53
Period size: 6 Copynumber: 15.0 Consensus size: 6
98393866 TGAATCCTCC
* *
98393876 TATTTT T-TTATT TATTCT TATTTT CT-TTAGTT TATTTT TATTTT TCTTTT
1 TATTTT TATT-TT TATTTT TATTTT -TATT--TT TATTTT TATTTT TATTTT
* * * * *
98393926 AATTTT TATTTT CA-TTT CAATTT TATTAT TA-TTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
98393966 AAAAGACATA
Statistics
Matches: 65, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 11 0.17
6 46 0.71
7 4 0.06
8 4 0.06
ACGTcount: A:0.19, C:0.06, G:0.01, T:0.74
Consensus pattern (6 bp):
TATTTT
Found at i:98396864 original size:17 final size:16
Alignment explanation
Indices: 98396844--98396886 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
98396834 TCTCTTCGCT
* *
98396844 TTAATTAAATCAGTTAA
1 TTAATTAAAT-AATCAA
98396861 TTAATTTAAATAATCAA
1 TTAA-TTAAATAATCAA
98396878 TTAATTAAA
1 TTAATTAAA
98396887 ACAAACCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 5 0.22
17 12 0.52
18 6 0.26
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (16 bp):
TTAATTAAATAATCAA
Found at i:98399343 original size:47 final size:48
Alignment explanation
Indices: 98399256--98399369 Score: 126
Period size: 47 Copynumber: 2.4 Consensus size: 48
98399246 GTAAGGTGCT
* * * * * **
98399256 GATGCCATATCCCAGATATGGTCTTACACTGGCTCACATCT-GAATTC
1 GATGCCATGTCCCAGACATGGCCTTAAACTGACTCACATCTCGAAGCC
*
98399303 GATGCCATGTCCCAGACATGGCCTTAAACTGACT-ATCATCTCGCAGCC
1 GATGCCATGTCCCAGACATGGCCTTAAACTGACTCA-CATCTCGAAGCC
98399351 GATG-CATGTCCCAGACATG
1 GATGCCATGTCCCAGACATG
98399370 TCTTACATTG
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 49 0.86
48 7 0.12
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGCCTTAAACTGACTCACATCTCGAAGCC
Found at i:98400697 original size:26 final size:27
Alignment explanation
Indices: 98400658--98400720 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
98400648 TATACTCGAC
* *
98400658 TCCAAATTTTTGGTCCCGAAACCAC-T
1 TCCAAATTTGTGGTCCCAAAACCACAT
98400684 TCCAAATTTGTGGTCCCAAAACCACTAT
1 TCCAAATTTGTGGTCCCAAAACCAC-AT
98400712 TCCAAATTT
1 TCCAAATTT
98400721 TTCGGGCTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 23 0.70
28 10 0.30
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.32
Consensus pattern (27 bp):
TCCAAATTTGTGGTCCCAAAACCACAT
Found at i:98420260 original size:16 final size:15
Alignment explanation
Indices: 98420233--98420262 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
98420223 TAAAATAAAA
98420233 AATAAAATAAAATGC
1 AATAAAATAAAATGC
98420248 AATAAAGATAAAATG
1 AATAAA-ATAAAATG
98420263 GCTAAAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.20
Consensus pattern (15 bp):
AATAAAATAAAATGC
Found at i:98421869 original size:20 final size:21
Alignment explanation
Indices: 98421844--98421882 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
98421834 TCCTTAAAAC
98421844 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
98421864 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
98421883 ACCAACTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.21, C:0.31, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:98423119 original size:46 final size:46
Alignment explanation
Indices: 98423018--98423239 Score: 227
Period size: 46 Copynumber: 4.7 Consensus size: 46
98423008 TCGGTAAGGT
*
98423018 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCG-AG
* * *
98423066 GCCGATGCATGTCCCAGACATGTCTCACACTAGCT-TACGTTTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAG
* * *
98423112 GCCGATGCATGTCCCAGACATGTCTTACATTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * * *
98423158 GCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAG
* *
98423206 GCTGATTCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
98423240 CAACAACAAC
Statistics
Matches: 147, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
45 2 0.01
46 73 0.50
47 42 0.29
48 29 0.20
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:98423230 original size:94 final size:92
Alignment explanation
Indices: 98423018--98423239 Score: 245
Period size: 94 Copynumber: 2.4 Consensus size: 92
98423008 TCGGTAAGGT
*
98423018 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTAGCCGATGCATGTCCCA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTATCATCTCATAGCCGATGCATGTCCCA
* *
98423082 GACATGTCTCACACTAGCTTACGTTTCGAG
63 GACATGTCTCACACTAGCTTACATATCGAG
* *
98423112 GCCGATGCATGTCCCAGACATGTCTTACATTAGCTCTCATCTCA-ATGCCGATGCCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCATA-GCCGATG-CATGTCCCAG
* * * *
98423176 ATATGGTCTTACACTGGCTCT-CATAAT-GTG
64 ACAT-GTCTCACACTAGCT-TACAT-ATCGAG
* *
98423206 GCTGATTCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
98423240 CAACAACAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
91 1 0.01
92 25 0.23
93 28 0.25
94 54 0.49
95 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCATAGCCGATGCATGTCCCAGAC
ATGTCTCACACTAGCTTACATATCGAG
Found at i:98428989 original size:19 final size:19
Alignment explanation
Indices: 98428967--98429008 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
98428957 TCAAGCGATC
*
98428967 AAAACTTTTGAATTTGATT
1 AAAACTTTTGAATTTGAGT
*
98428986 AAAACTTTTGGATTTGAGT
1 AAAACTTTTGAATTTGAGT
98429005 AAAA
1 AAAA
98429009 TGTAGATGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (19 bp):
AAAACTTTTGAATTTGAGT
Found at i:98432469 original size:35 final size:35
Alignment explanation
Indices: 98432407--98432497 Score: 121
Period size: 35 Copynumber: 2.6 Consensus size: 35
98432397 CATTGCGATG
* *
98432407 ACGATTTATAGGT-CATTCGGGTGACACCATGGAA
1 ACGATTTATAGGTCCTTTGGGGTGACACCATGGAA
* *
98432441 ACGGTTTATAGGTCCTTTGGGGTGACACCGTGGAA
1 ACGATTTATAGGTCCTTTGGGGTGACACCATGGAA
* *
98432476 ATGATTTATAGGTCTTTTGGGG
1 ACGATTTATAGGTCCTTTGGGG
98432498 AAACACCTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 12 0.24
35 37 0.76
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (35 bp):
ACGATTTATAGGTCCTTTGGGGTGACACCATGGAA
Found at i:98432646 original size:68 final size:68
Alignment explanation
Indices: 98432551--98432813 Score: 341
Period size: 68 Copynumber: 3.9 Consensus size: 68
98432541 CTACCACTAA
* * * *
98432551 AATAAACATGAGATCATATTGTGTAAGACCATGGTTCGAATATGTCAACATATGAAGTCTGCCAG
1 AATAAACATGAGATCATATTGTGTAAGACCATAGCTCGACTATGGCAACATATGAAGTCTGCCAG
98432616 GAC
66 GAC
*
98432619 AATAAACATGAGATCATATTGTGTAAGACCATAGCTCGACTATGGCAACATATGAAGTCTGCCAA
1 AATAAACATGAGATCATATTGTGTAAGACCATAGCTCGACTATGGCAACATATGAAGTCTGCCAG
98432684 GAC
66 GAC
* * ** * * *
98432687 AATAAACATGGGAACATATTGTGTAAGACTGTAGCTCGACTAAGGAAACATATGAAATCCT-CCA
1 AATAAACATGAGATCATATTGTGTAAGACCATAGCTCGACTATGGCAACATATGAAGT-CTGCCA
*
98432751 GGAT
65 GGAC
* * * *
98432755 AATAAACATG-GAATCATATTGTGTAAGACCATAGGTAGGCTATGGCAATATATGAAGTC
1 AATAAACATGAG-ATCATATTGTGTAAGACCATAGCTCGACTATGGCAACATATGAAGTC
98432814 CACCAAGATG
Statistics
Matches: 169, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
67 2 0.01
68 165 0.98
69 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (68 bp):
AATAAACATGAGATCATATTGTGTAAGACCATAGCTCGACTATGGCAACATATGAAGTCTGCCAG
GAC
Found at i:98438541 original size:30 final size:30
Alignment explanation
Indices: 98438505--98438561 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
98438495 TGGGTAACCT
*
98438505 TGATATAATGTCAACTTGTGTGAGCAACAC
1 TGATATAATGTCAACTTATGTGAGCAACAC
*
98438535 TGATATACTGTCAACTTATGTGAGCAA
1 TGATATAATGTCAACTTATGTGAGCAA
98438562 TTTTTTCCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (30 bp):
TGATATAATGTCAACTTATGTGAGCAACAC
Found at i:98441246 original size:7 final size:8
Alignment explanation
Indices: 98441227--98441252 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
98441217 ATTTTTGTAC
98441227 AAAAAATT
1 AAAAAATT
98441235 AAAAAATT
1 AAAAAATT
98441243 AAAAAATT
1 AAAAAATT
98441251 AA
1 AA
98441253 TATAGACAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAAAATT
Found at i:98453268 original size:2 final size:2
Alignment explanation
Indices: 98453261--98453290 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
98453251 TTATGTCATG
98453261 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
98453291 TCATCTATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:98453448 original size:39 final size:39
Alignment explanation
Indices: 98453394--98453474 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
98453384 AATATGTGAA
98453394 TAAAACTTTATATGGCTTACCAATAAGCCAGGCCCGTAC
1 TAAAACTTTATATGGCTTACCAATAAGCCAGGCCCGTAC
98453433 TAAAACTTTATATGGCTTACCAATAAGCCAGGCCCGTAC
1 TAAAACTTTATATGGCTTACCAATAAGCCAGGCCCGTAC
98453472 TAA
1 TAA
98453475 TTAAGCCTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.26
Consensus pattern (39 bp):
TAAAACTTTATATGGCTTACCAATAAGCCAGGCCCGTAC
Found at i:98454043 original size:42 final size:42
Alignment explanation
Indices: 98453979--98454059 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
98453969 CACAGCCATA
* *
98453979 TGGGGTGACCATGTGTGGCACACGACTGTGTGACAGACCGTG
1 TGGGATGACCATGTGTGACACACGACTGTGTGACAGACCGTG
* * *
98454021 TGGGATGACCGTGTGTGACACACGATTGTGTGATAGACC
1 TGGGATGACCATGTGTGACACACGACTGTGTGACAGACC
98454060 TTGTTTAGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.21, C:0.20, G:0.36, T:0.23
Consensus pattern (42 bp):
TGGGATGACCATGTGTGACACACGACTGTGTGACAGACCGTG
Found at i:98459123 original size:27 final size:28
Alignment explanation
Indices: 98459092--98459171 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 28
98459082 TTAATATTAC
*
98459092 ACATATTTATTTAATAATAAAATAAAA-
1 ACATATATATTTAATAATAAAATAAAAT
* * ***
98459119 ACATATGTAATTAATAA-GCGATAAAAT
1 ACATATATATTTAATAATAAAATAAAAT
*
98459146 A-ATATATATTTTATAATAAAATAAAA
1 ACATATATATTTAATAATAAAATAAAA
98459172 GTGATGTAAG
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
26 18 0.45
27 22 0.55
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (28 bp):
ACATATATATTTAATAATAAAATAAAAT
Found at i:98459243 original size:21 final size:21
Alignment explanation
Indices: 98459219--98459264 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
98459209 TAATAAAATT
98459219 TATAAACGAAATAT-ATAA-TAA
1 TATAAAC--AATATGATAAGTAA
98459240 TATAAACAATATGATAAGTAA
1 TATAAACAATATGATAAGTAA
98459261 TATA
1 TATA
98459265 TAAAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.22
20 4 0.17
21 14 0.61
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (21 bp):
TATAAACAATATGATAAGTAA
Found at i:98459271 original size:21 final size:18
Alignment explanation
Indices: 98459227--98459276 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 18
98459217 TTTATAAACG
98459227 AAATATATAATAATATAA
1 AAATATATAATAATATAA
98459245 ACAATATGATAAGTAATATATA
1 A-AATAT-ATAA-TAATATA-A
98459267 AAATAATATA
1 AAAT-ATATA
98459277 TATTTATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 1 0.04
19 5 0.19
20 4 0.15
21 13 0.48
22 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (18 bp):
AAATATATAATAATATAA
Found at i:98459279 original size:16 final size:16
Alignment explanation
Indices: 98459260--98459321 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
98459250 ATGATAAGTA
98459260 ATATATAAAATAATAT
1 ATATATAAAATAATAT
* * *
98459276 ATATTTATAATAAAAT
1 ATATATAAAATAATAT
** *
98459292 ATAGGTAACATAATAT
1 ATATATAAAATAATAT
*
98459308 ATA-ATAATATAATA
1 ATATATAAAATAATA
98459322 AATAAAATAC
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
15 9 0.25
16 27 0.75
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (16 bp):
ATATATAAAATAATAT
Found at i:98461033 original size:16 final size:16
Alignment explanation
Indices: 98461012--98461043 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
98461002 TGCAGTGGCT
98461012 TTGGTTGAAAGTTTCA
1 TTGGTTGAAAGTTTCA
98461028 TTGGTTGAAAGTTTCA
1 TTGGTTGAAAGTTTCA
98461044 AGTGGCTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.25, T:0.44
Consensus pattern (16 bp):
TTGGTTGAAAGTTTCA
Found at i:98469687 original size:85 final size:84
Alignment explanation
Indices: 98469539--98469695 Score: 219
Period size: 85 Copynumber: 1.9 Consensus size: 84
98469529 TAAGTCTTTG
* *
98469539 TTTTTTTACACTCAATTGAGTACTTGAACTTTTAAAATGCATAAAAAAGGCCTCCAAATTTTTTT
1 TTTTTTTACACTCAATTGAGTACTTGAACTTTCAAAATGCATAAAAAAGGCCTCCAAA-CTTTTT
98469604 CAAAAAAAGTAACAAAGGCA
65 CAAAAAAAGTAACAAAGGCA
* * * *
98469624 TTTTTTTGCACTCAATT-ATGTATTTGAACTTTCAAAATGCATAAAAAAAG-TTCTCAAACTTTT
1 TTTTTTTACACTCAATTGA-GTACTTGAACTTTCAAAATGCATAAAAAAGGCCTC-CAAACTTTT
98469687 TCAAAAAAA
64 TCAAAAAAA
98469696 TAATTAAATC
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
84 16 0.25
85 48 0.75
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.36
Consensus pattern (84 bp):
TTTTTTTACACTCAATTGAGTACTTGAACTTTCAAAATGCATAAAAAAGGCCTCCAAACTTTTTC
AAAAAAAGTAACAAAGGCA
Found at i:98469906 original size:9 final size:9
Alignment explanation
Indices: 98469894--98470015 Score: 50
Period size: 9 Copynumber: 12.9 Consensus size: 9
98469884 TCAATAAATT
98469894 TTATAAAAA
1 TTATAAAAA
**
98469903 TTATTAAATT
1 TTA-TAAAAA
98469913 TTAATAAAAA
1 TT-ATAAAAA
98469923 -TATAAAAA
1 TTATAAAAA
*
98469931 TCGTAAAAAAA
1 T--TATAAAAA
*
98469942 TTAGAAAAA
1 TTATAAAAA
*
98469951 TCATAAAAA
1 TTATAAAAA
**
98469960 CCATAAAAA
1 TTATAAAAA
**
98469969 -TATAAATTTT
1 TTATAAA--AA
**
98469979 TTATAAATT
1 TTATAAAAA
98469988 TTATAAAAAA
1 TTAT-AAAAA
*
98469998 TTGTAAAAAA
1 TTAT-AAAAA
98470008 TTATAAAA
1 TTATAAAA
98470016 TATACAGAAA
Statistics
Matches: 88, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
8 12 0.14
9 36 0.41
10 25 0.28
11 15 0.17
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:98469919 original size:20 final size:20
Alignment explanation
Indices: 98469876--98469923 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
98469866 AAATGTTAAA
98469876 AATAAAAATCAATAAATTTT
1 AATAAAAATCAATAAATTTT
* *
98469896 -ATAAAAATTATTAAATTTT
1 AATAAAAATCAATAAATTTT
98469915 AATAAAAAT
1 AATAAAAAT
98469924 ATAAAAATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAAAAATCAATAAATTTT
Found at i:98469931 original size:20 final size:20
Alignment explanation
Indices: 98469876--98469931 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
98469866 AAATGTTAAA
98469876 AATAAAAATCA-ATAAATTTT
1 AATAAAAAT-ATATAAATTTT
98469896 -ATAAAAAT-TATTAAATTTT
1 AATAAAAATATA-TAAATTTT
*
98469915 AATAAAAATATAAAAAT
1 AATAAAAATATATAAAT
98469932 CGTAAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.03
19 16 0.52
20 12 0.39
21 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
AATAAAAATATATAAATTTT
Found at i:98469941 original size:20 final size:20
Alignment explanation
Indices: 98469918--98469959 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
98469908 AAATTTTAAT
* *
98469918 AAAAATATAAAAATCGTAAA
1 AAAAATAGAAAAATCATAAA
*
98469938 AAAATTAGAAAAATCATAAA
1 AAAAATAGAAAAATCATAAA
98469958 AA
1 AA
98469960 CCATAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.19
Consensus pattern (20 bp):
AAAAATAGAAAAATCATAAA
Found at i:98470011 original size:20 final size:20
Alignment explanation
Indices: 98469988--98470116 Score: 63
Period size: 21 Copynumber: 6.5 Consensus size: 20
98469978 TTTATAAATT
98469988 TTATAAAAAATTGTAAAAAA
1 TTATAAAAAATTGTAAAAAA
* *
98470008 TTAT--AAAA-TATACAGAAA
1 TTATAAAAAATTGTA-AAAAA
* *
98470026 -TATAGAAAAATATATATAAAA
1 TTATA-AAAAAT-TGTAAAAAA
* * * *
98470047 TTTTATAAAGTCGTAAGAAAA
1 TTATAAAAAATTGTAA-AAAA
*
98470068 TTATAAAAAAATGTAAAGAAA
1 TTATAAAAAATTGTAAA-AAA
* *
98470089 -TAT-AAAATTTGTAATAAAT
1 TTATAAAAAATTGTAA-AAAA
98470108 TTATAAAAA
1 TTATAAAAA
98470117 GTATTGTACC
Statistics
Matches: 79, Mismatches: 18, Indels: 23
0.66 0.15 0.19
Matches are distributed among these distances:
17 6 0.08
18 8 0.10
19 11 0.14
20 18 0.23
21 29 0.37
22 7 0.09
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (20 bp):
TTATAAAAAATTGTAAAAAA
Done.