Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 294 of 362
Found at i:98812474 original size:2 final size:2
Alignment explanation
Indices: 98812461--98812501 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
98812451 CAGTAGTGCA
*
98812461 AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
98812502 AAAGAAAGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.02, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Found at i:98815653 original size:60 final size:60
Alignment explanation
Indices: 98815578--98815711 Score: 191
Period size: 60 Copynumber: 2.2 Consensus size: 60
98815568 CAATTTGATC
* * ** * *
98815578 CTAAATCTAAAAATTCAATAAATTTAGTCC-TCAATGTTTACAAAATTTGTCATTTTAGTT
1 CTAATTCTTAAAATTCAATAAATTTAG-CCTTCAACATTTACAAAATTTGTCAATTTAGTG
98815638 CTAATTCTTAAAATTCAATAAATTTAGCCTTCAACATTTACAAAATTTGTCAATTTAGTG
1 CTAATTCTTAAAATTCAATAAATTTAGCCTTCAACATTTACAAAATTTGTCAATTTAGTG
98815698 CTAATTC-TAAAATT
1 CTAATTCTTAAAATT
98815712 TAAAAAAAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
59 9 0.13
60 58 0.87
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.41
Consensus pattern (60 bp):
CTAATTCTTAAAATTCAATAAATTTAGCCTTCAACATTTACAAAATTTGTCAATTTAGTG
Found at i:98815744 original size:18 final size:19
Alignment explanation
Indices: 98815719--98815753 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
98815709 ATTTAAAAAA
98815719 AAAGAAAAAT-ATTTTTTT
1 AAAGAAAAATCATTTTTTT
98815737 AAA-AAAAATCATTTTTT
1 AAAGAAAAATCATTTTTT
98815754 GGATAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (19 bp):
AAAGAAAAATCATTTTTTT
Found at i:98831639 original size:38 final size:38
Alignment explanation
Indices: 98831588--98831661 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
98831578 TCAAAAGAGT
98831588 TTCGACTGAGGTGGAAAAGGGTTGGAAAGAGTCAAGTG
1 TTCGACTGAGGTGGAAAAGGGTTGGAAAGAGTCAAGTG
98831626 TTCGACTGAGGTGGAAAAGGGTTGGAAAGAGTCAAG
1 TTCGACTGAGGTGGAAAAGGGTTGGAAAGAGTCAAG
98831662 CGTGGGGGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.32, C:0.08, G:0.39, T:0.20
Consensus pattern (38 bp):
TTCGACTGAGGTGGAAAAGGGTTGGAAAGAGTCAAGTG
Found at i:98833317 original size:26 final size:26
Alignment explanation
Indices: 98833288--98833338 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
98833278 TTAGCCACAT
*
98833288 ATACTGATACTGGCAGCTTTGCTGCA
1 ATACTGATAATGGCAGCTTTGCTGCA
*
98833314 ATACTGCTAATGGCAGCTTTGCTGC
1 ATACTGATAATGGCAGCTTTGCTGC
98833339 GATATTGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (26 bp):
ATACTGATAATGGCAGCTTTGCTGCA
Found at i:98834370 original size:22 final size:23
Alignment explanation
Indices: 98834340--98834383 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
98834330 ACAGATACGC
*
98834340 GAATTTCC-ACCCAAACACACCA
1 GAATATCCAACCCAAACACACCA
98834362 GAATATCCAACCCAAACACACC
1 GAATATCCAACCCAAACACACC
98834384 CGGAATATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.43, C:0.41, G:0.05, T:0.11
Consensus pattern (23 bp):
GAATATCCAACCCAAACACACCA
Found at i:98835508 original size:12 final size:12
Alignment explanation
Indices: 98835493--98835523 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
98835483 TTCTCTTTTA
*
98835493 TTTTTCTTTCCC
1 TTTTTCTTTCAC
98835505 TTTTTCTTTCAC
1 TTTTTCTTTCAC
98835517 TTTTTCT
1 TTTTTCT
98835524 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTTCTTTCAC
Found at i:98845833 original size:30 final size:30
Alignment explanation
Indices: 98845799--98845856 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
98845789 TTAGAAGGAC
*
98845799 AAAAAATTTAATATCAAATATTTAGTTTAT
1 AAAAAATTGAATATCAAATATTTAGTTTAT
*
98845829 AAAAAATTGAATATCAAATCTTTAGTTT
1 AAAAAATTGAATATCAAATATTTAGTTT
98845857 TAACCACAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.41
Consensus pattern (30 bp):
AAAAAATTGAATATCAAATATTTAGTTTAT
Found at i:98845891 original size:57 final size:57
Alignment explanation
Indices: 98845816--98845936 Score: 215
Period size: 57 Copynumber: 2.1 Consensus size: 57
98845806 TTAATATCAA
98845816 ATATTTAGTTTATAAAAAATTGAATATCAAATCTTTAGTTTTAACCACAATTCTATT
1 ATATTTAGTTTATAAAAAATTGAATATCAAATCTTTAGTTTTAACCACAATTCTATT
* * *
98845873 GTATTTAGTTTCTGAAAAATTGAATATCAAATCTTTAGTTTTAACCACAATTCTATT
1 ATATTTAGTTTATAAAAAATTGAATATCAAATCTTTAGTTTTAACCACAATTCTATT
98845930 ATATTTA
1 ATATTTA
98845937 ATCAAGACAA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.45
Consensus pattern (57 bp):
ATATTTAGTTTATAAAAAATTGAATATCAAATCTTTAGTTTTAACCACAATTCTATT
Found at i:98858043 original size:16 final size:16
Alignment explanation
Indices: 98858010--98858056 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
98858000 ATTGACGTGA
*
98858010 AAAACATTAA-AATGTT
1 AAAACAATAATAAT-TT
*
98858026 AAAACAATATTAATTT
1 AAAACAATAATAATTT
*
98858042 AAAATAATAATAATT
1 AAAACAATAATAATT
98858057 CCCATTTTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 23 0.88
17 3 0.12
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (16 bp):
AAAACAATAATAATTT
Found at i:98861321 original size:121 final size:121
Alignment explanation
Indices: 98861117--98861339 Score: 331
Period size: 121 Copynumber: 1.8 Consensus size: 121
98861107 TCCCAGTTCA
* * * *
98861117 TGTGTCCGCCCGTGTGTGCATTCAATGTTGGGTCACATGACCATGTCACAGGTCGTGTCACAAAC
1 TGTGTCCGCCCGTATGTGCATTCAATGTTGGGTCACACGACCATGTCACAAGCCGTGTCACAAAC
98861182 CATGTAACTAATCGTTTTAAGATACACAGTCGTGTCGCAAGCTATTTCCCAACCTG
66 CATGTAACTAATCGTTTTAAGATACACAGTCGTGTCGCAAGCTATTTCCCAACCTG
* * * * * *
98861238 TGTGTCCGCCCTTATGTGCATTTAATGTTGGGTCACACGGCCATGTCGCAAGCCGTGTCTCAGAC
1 TGTGTCCGCCCGTATGTGCATTCAATGTTGGGTCACACGACCATGTCACAAGCCGTGTCACAAAC
*
98861303 CATGTAACTAA-CTGTTTTAAGATACACGGTCGTGTCG
66 CATGTAACTAATC-GTTTTAAGATACACAGTCGTGTCG
98861340 TAGGCTGTGT
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
120 1 0.01
121 89 0.99
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (121 bp):
TGTGTCCGCCCGTATGTGCATTCAATGTTGGGTCACACGACCATGTCACAAGCCGTGTCACAAAC
CATGTAACTAATCGTTTTAAGATACACAGTCGTGTCGCAAGCTATTTCCCAACCTG
Found at i:98862593 original size:34 final size:35
Alignment explanation
Indices: 98862518--98862593 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 35
98862508 TTGTGCCTAA
*
98862518 CACTAGTCGAATAAATCAACAAAGATTGCGCCCAG
1 CACTAGTCGAATAAACCAACAAAGATTGCGCCCAG
* * * *
98862553 CGCTAGTCGGAT-AACCAACAATAG-TTGTGCCCTG
1 CACTAGTCGAATAAACCAACAA-AGATTGCGCCCAG
98862587 CACTAGT
1 CACTAGT
98862594 TGGGTGTACC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
34 22 0.65
35 12 0.35
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (35 bp):
CACTAGTCGAATAAACCAACAAAGATTGCGCCCAG
Found at i:98864922 original size:14 final size:15
Alignment explanation
Indices: 98864905--98864934 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
98864895 TCAAAACAGG
98864905 GAAAGAAAA-AGAAA
1 GAAAGAAAAGAGAAA
98864919 GAAAGAAAAGAGAAA
1 GAAAGAAAAGAGAAA
98864934 G
1 G
98864935 GAAAAACTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
GAAAGAAAAGAGAAA
Found at i:98870539 original size:3 final size:3
Alignment explanation
Indices: 98870531--98870712 Score: 112
Period size: 3 Copynumber: 62.3 Consensus size: 3
98870521 AATATCATTT
* * * *
98870531 TTA TTA TTA TTT TTA TATA TTA TTA TTA TTA TCA TTA TTA TCA CTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
98870577 TTA GTA CTA TTA TTA TT- TT- TTA TCA TTA TTA TTA TTA CTT- TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* * * * * * *
98870619 TTC CTA CTA TTA TTA TT- TCGTA CTA TTA TTG TTA TTA TTA CTA CTA
1 TTA TTA TTA TTA TTA TTA T--TA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
98870665 TTA TT- TT- TTA TTA TT- TT- TTA CTA TTA TTA TTG TTG TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
98870709 TTA T
1 TTA T
98870713 CTTTTTAATT
Statistics
Matches: 144, Mismatches: 26, Indels: 18
0.77 0.14 0.10
Matches are distributed among these distances:
2 17 0.12
3 121 0.84
4 6 0.04
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:98870642 original size:16 final size:16
Alignment explanation
Indices: 98870618--98870648 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98870608 TTATTACTTT
98870618 TTTCCTACTATTATTA
1 TTTCCTACTATTATTA
*
98870634 TTTCGTACTATTATT
1 TTTCCTACTATTATT
98870649 GTTATTATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.03, T:0.58
Consensus pattern (16 bp):
TTTCCTACTATTATTA
Found at i:98870686 original size:26 final size:28
Alignment explanation
Indices: 98870656--98870707 Score: 81
Period size: 26 Copynumber: 1.9 Consensus size: 28
98870646 ATTGTTATTA
98870656 TTACTACTATTATT-TT-TTATTATTTT
1 TTACTACTATTATTGTTGTTATTATTTT
*
98870682 TTACTATTATTATTGTTGTTATTATT
1 TTACTACTATTATTGTTGTTATTATT
98870708 ATTATCTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 13 0.57
27 2 0.09
28 8 0.35
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.67
Consensus pattern (28 bp):
TTACTACTATTATTGTTGTTATTATTTT
Found at i:98870687 original size:44 final size:45
Alignment explanation
Indices: 98870628--98870719 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 45
98870618 TTTCCTACTA
*
98870628 TTATTATTTCGTACTATTATTGTTATTATTACTACTATTAT-TTT
1 TTATTATTTCGTACTATTATTATTATTATTACTACTATTATCTTT
** * * * *
98870672 TTATTATTTTTTACTATTATTATTGTTGTTATTATTATTATCTTT
1 TTATTATTTCGTACTATTATTATTATTATTACTACTATTATCTTT
98870717 TTA
1 TTA
98870720 ATTTGTGTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 34 0.85
45 6 0.15
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.65
Consensus pattern (45 bp):
TTATTATTTCGTACTATTATTATTATTATTACTACTATTATCTTT
Found at i:98870851 original size:15 final size:16
Alignment explanation
Indices: 98870812--98870852 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
98870802 CTTATGGGTT
**
98870812 TTATTTATTTTATGCA
1 TTATTTATTTTAAACA
98870828 TTATTTATTTTAAACA
1 TTATTTATTTTAAACA
98870844 TT-TTTATTT
1 TTATTTATTT
98870853 GTTGTCTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (16 bp):
TTATTTATTTTAAACA
Found at i:98878551 original size:19 final size:19
Alignment explanation
Indices: 98878503--98878552 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
98878493 GGTATAGAGC
*
98878503 ACACGCCCGTATGCTAGGG
1 ACACGCCCGTGTGCTAGGG
98878522 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
98878541 ACACGCCCGTGT
1 ACACGCCCGTGT
98878553 CCCAAACCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (19 bp):
ACACGCCCGTGTGCTAGGG
Found at i:98880108 original size:93 final size:93
Alignment explanation
Indices: 98879996--98880165 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
98879986 GCCCATAAGT
* *
98879996 GAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGA-ACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
98880060 ATGAGCTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
*
98880089 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
98880154 CGAGTTCGGATG
66 CGAGCTCGGATG
98880166 TTCAACCATC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:98880182 original size:46 final size:46
Alignment explanation
Indices: 98879988--98880168 Score: 192
Period size: 46 Copynumber: 3.9 Consensus size: 46
98879978 TGTAACCTGC
98879988 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGTTCGCAT
* *
98880034 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCAT
* * * * *
98880084 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
98880127 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTC
98880169 AACCATCCTA
Statistics
Matches: 111, Mismatches: 14, Indels: 20
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 4 0.04
46 64 0.58
47 26 0.23
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:98885084 original size:9 final size:8
Alignment explanation
Indices: 98885069--98885093 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
98885059 TGAGACCTTC
98885069 TAAAAAAA
1 TAAAAAAA
98885077 TAAAAAAA
1 TAAAAAAA
98885085 TAAAAAAA
1 TAAAAAAA
98885093 T
1 T
98885094 GGAGAAGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:98886034 original size:45 final size:44
Alignment explanation
Indices: 98885938--98886154 Score: 217
Period size: 45 Copynumber: 4.8 Consensus size: 44
98885928 ATCTACAAAC
*
98885938 CTTATCTCACTGAAGTTGCAGTAGAGCAG---GAAATTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAATTACAAGT
*
98885979 CTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAGGATTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGA-AATTACAAGT
* * *
98886024 GTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAATATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAAT-TA-CAAGT
* * * **
98886069 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAG-----A-CT-GAAATTACAAGT
*
98886120 CTTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAA
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAA
98886155 GAAAACGAAT
Statistics
Matches: 150, Mismatches: 12, Indels: 25
0.80 0.06 0.13
Matches are distributed among these distances:
41 28 0.19
43 2 0.01
44 7 0.05
45 73 0.49
46 1 0.01
50 1 0.01
51 33 0.22
52 1 0.01
53 4 0.03
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAATTACAAGT
Found at i:98886166 original size:96 final size:95
Alignment explanation
Indices: 98886025--98886207 Score: 260
Period size: 96 Copynumber: 1.9 Consensus size: 95
98886015 ATTACAAGTG
** * * *
98886025 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAATCTTATCTCCCTGA-AGTTGCA
1 TTATCTCCCTGAAGTTGCAGCAGAGCAGACTAAAGAAAACAAATCTTA-CTCCCTGACA-TTGCA
*
98886089 GTGGAGCAGATTAAAGCTACAAATCACAAACC
64 GTGGAACAGATTAAAGCTACAAATCACAAACC
* * *
98886121 TTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGAAAACGAATCTTAGTCCCTGACATTGCAGT
1 TTATCTCCCTGAAGTTGCAGCAGAGCAGACTAAAGAAAACAAATCTTACTCCCTGACATTGCAGT
98886186 GGAACAGATTAAAGCTACAAAT
66 GGAACAGATTAAAGCTACAAAT
98886208 TATAGAGAAT
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
95 35 0.45
96 42 0.55
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (95 bp):
TTATCTCCCTGAAGTTGCAGCAGAGCAGACTAAAGAAAACAAATCTTACTCCCTGACATTGCAGT
GGAACAGATTAAAGCTACAAATCACAAACC
Found at i:98887981 original size:15 final size:15
Alignment explanation
Indices: 98887961--98887989 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
98887951 TCAAATACTA
98887961 TTATTTATCTATTTT
1 TTATTTATCTATTTT
98887976 TTATTTATCTATTT
1 TTATTTATCTATTT
98887990 ATATTTCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (15 bp):
TTATTTATCTATTTT
Found at i:98888066 original size:3 final size:3
Alignment explanation
Indices: 98888058--98888199 Score: 83
Period size: 3 Copynumber: 47.3 Consensus size: 3
98888048 ATATCATTTT
* * * * * *
98888058 TTA TTA TTA TCA TTA TTA TCA CTA TTA GTA CTA TTA TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
98888106 TTA TTA TTA TTA CTT- TT- TTC CTA CTA TTT TTA TT- TCGTA CTA TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T--TA TTA TTA
* * * * * *
98888151 TTG TTA TTA TTA CTA CTA CTA CTA CTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
98888199 T
1 T
98888200 CTTTTTAACT
Statistics
Matches: 112, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
2 5 0.04
3 104 0.93
4 3 0.03
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:98888239 original size:22 final size:22
Alignment explanation
Indices: 98888214--98888282 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
98888204 TTAACTTGTG
*
98888214 TTATTTAATCTTTTATTATTTT
1 TTATTTAATCTTTTATTGTTTT
*
98888236 TTA-TTAAACTTTTATTTGTTTAT
1 TTATTTAATCTTTTA-TTGTTT-T
* *
98888259 TTATTTACTCTTTTAGTGTTTT
1 TTATTTAATCTTTTATTGTTTT
98888281 TT
1 TT
98888283 TTACCAGCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 10 0.26
22 11 0.28
23 9 0.23
24 9 0.23
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.70
Consensus pattern (22 bp):
TTATTTAATCTTTTATTGTTTT
Found at i:98888340 original size:15 final size:16
Alignment explanation
Indices: 98888300--98888340 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
98888290 CTTATGGGTT
*
98888300 TTATTTATTTTATACA
1 TTATTTATTTTAAACA
*
98888316 TTATTTATTTTAAACC
1 TTATTTATTTTAAACA
98888332 TTA-TTATTT
1 TTATTTATTT
98888341 GTTGTCTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.63
Consensus pattern (16 bp):
TTATTTATTTTAAACA
Found at i:98889303 original size:15 final size:15
Alignment explanation
Indices: 98889283--98889366 Score: 73
Period size: 15 Copynumber: 5.6 Consensus size: 15
98889273 TTTATGGAAA
98889283 ATCAAATATATGGGT
1 ATCAAATATATGGGT
* **
98889298 ATCAAATA-ATAGAA
1 ATCAAATATATGGGT
*
98889312 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
**
98889328 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
*
98889342 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
98889358 ATCAAATAT
1 ATCAAATAT
98889367 TGGAAAGTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
14 8 0.16
15 35 0.69
16 8 0.16
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.27
Consensus pattern (15 bp):
ATCAAATATATGGGT
Found at i:98889324 original size:30 final size:30
Alignment explanation
Indices: 98889277--98889400 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
98889267 TCCATATTTA
* * *
98889277 TGGAAAATCAAATATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
98889307 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
98889337 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
* *
98889367 TGGAAAGTTAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
98889398 TGG
1 TGG
98889401 CATAATAAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 78 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:98903321 original size:17 final size:17
Alignment explanation
Indices: 98903299--98903332 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
98903289 ATAGCATAAA
98903299 TGACAGAAGGATTTAGC
1 TGACAGAAGGATTTAGC
98903316 TGACAGAAGGATTTAGC
1 TGACAGAAGGATTTAGC
98903333 GGAGCTGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (17 bp):
TGACAGAAGGATTTAGC
Found at i:98910691 original size:9 final size:8
Alignment explanation
Indices: 98910677--98910726 Score: 68
Period size: 7 Copynumber: 6.2 Consensus size: 8
98910667 TTGCTTTTTG
98910677 TTTTTAGTT
1 TTTTTA-TT
98910686 TTTTTA-T
1 TTTTTATT
98910693 TTTTTATTT
1 TTTTTA-TT
98910702 TTTTTATT
1 TTTTTATT
98910710 TTTTTA-T
1 TTTTTATT
98910717 TTTTTATT
1 TTTTTATT
98910725 TT
1 TT
98910727 GCTTTGTGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
7 14 0.37
8 11 0.29
9 13 0.34
ACGTcount: A:0.12, C:0.00, G:0.02, T:0.86
Consensus pattern (8 bp):
TTTTTATT
Found at i:98910696 original size:16 final size:15
Alignment explanation
Indices: 98910685--98910726 Score: 66
Period size: 16 Copynumber: 2.7 Consensus size: 15
98910675 TGTTTTTAGT
*
98910685 TTTTTTATTTTTTATT
1 TTTTTTATTTTTT-TA
98910701 TTTTTTATTTTTTTA
1 TTTTTTATTTTTTTA
98910716 TTTTTTATTTT
1 TTTTTTATTTT
98910727 GCTTTGTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTTATTTTTTTA
Found at i:98910704 original size:17 final size:17
Alignment explanation
Indices: 98910677--98910721 Score: 74
Period size: 16 Copynumber: 2.7 Consensus size: 17
98910667 TTGCTTTTTG
*
98910677 TTTTTAGTTTTTTTA-T
1 TTTTTATTTTTTTTATT
98910693 TTTTTATTTTTTTTATT
1 TTTTTATTTTTTTTATT
98910710 TTTTTATTTTTT
1 TTTTTATTTTTT
98910722 ATTTTGCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 14 0.52
17 13 0.48
ACGTcount: A:0.11, C:0.00, G:0.02, T:0.87
Consensus pattern (17 bp):
TTTTTATTTTTTTTATT
Found at i:98910711 original size:24 final size:25
Alignment explanation
Indices: 98910677--98910726 Score: 93
Period size: 24 Copynumber: 2.0 Consensus size: 25
98910667 TTGCTTTTTG
98910677 TTTTTAGTTTTTTTATTTTTTATTT
1 TTTTTAGTTTTTTTATTTTTTATTT
98910702 TTTTTA-TTTTTTTATTTTTTATTT
1 TTTTTAGTTTTTTTATTTTTTATTT
98910726 T
1 T
98910727 GCTTTGTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.12, C:0.00, G:0.02, T:0.86
Consensus pattern (25 bp):
TTTTTAGTTTTTTTATTTTTTATTT
Found at i:98912343 original size:20 final size:19
Alignment explanation
Indices: 98912316--98912367 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
98912306 AAAAAATTAT
98912316 ACATTTTTATTTTTTTAAA
1 ACATTTTTATTTTTTTAAA
** *
98912335 ACAATTTTTATACTTTTCAA
1 AC-ATTTTTATTTTTTTAAA
*
98912355 ACCTTTTTATTTT
1 ACATTTTTATTTT
98912368 AAAAAAAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.60
Consensus pattern (19 bp):
ACATTTTTATTTTTTTAAA
Found at i:98916370 original size:20 final size:21
Alignment explanation
Indices: 98916345--98916388 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
98916335 TCATTGTTTA
98916345 ATTAAA-TT-TATTTTATATCT
1 ATTAAATTTATATTTTATAT-T
98916365 ATTAAATTTATATTTTATATT
1 ATTAAATTTATATTTTATATT
98916386 ATT
1 ATT
98916389 TTTATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.27
21 6 0.27
22 10 0.45
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTAAATTTATATTTTATATT
Found at i:98916663 original size:19 final size:19
Alignment explanation
Indices: 98916636--98916676 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
98916626 TGTCCAAGTG
*
98916636 CATATTTAGTACTACACCA
1 CATAATTAGTACTACACCA
*
98916655 CATAATTAGTACTACATCA
1 CATAATTAGTACTACACCA
98916674 CAT
1 CAT
98916677 TAATACATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (19 bp):
CATAATTAGTACTACACCA
Found at i:98920108 original size:42 final size:42
Alignment explanation
Indices: 98920057--98920171 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 42
98920047 ATTTAACTAA
* * * *
98920057 TATGAGTTTCTGTTCAACTCTTTTGAGGTTCTGTTTAACCCT
1 TATGAGTTTCTGTTCAACTCTTATGAGCTTCCGTTCAACCCT
* * *
98920099 TATGGGTTTCTGTTTAGCTCTTATGAGCTTCCGTTCAACCCT
1 TATGAGTTTCTGTTCAACTCTTATGAGCTTCCGTTCAACCCT
* * * * *
98920141 TATGTGTTTCTATTTAGCTCTCATGAGCTTC
1 TATGAGTTTCTGTTCAACTCTTATGAGCTTC
98920172 TGTTTAGCCT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.46
Consensus pattern (42 bp):
TATGAGTTTCTGTTCAACTCTTATGAGCTTCCGTTCAACCCT
Found at i:98920176 original size:63 final size:63
Alignment explanation
Indices: 98920027--98920179 Score: 153
Period size: 63 Copynumber: 2.4 Consensus size: 63
98920017 TTACTTTCCG
* * * * * * * *
98920027 TTTAGCTCTCACGAGCTTCTATTTAACTAATATGAGTTTCTGTTCAACTCTTTTGAGGTTCTG
1 TTTAGCTCTCATGAGCTTCTGTTTAGCTAATATGAGCTTCCGTTCAACCCTTATGAGGTTCTA
* * * * * ** * *
98920090 TTTAACCCTTATGGGTTTCTGTTTAGCTCTTATGAGCTTCCGTTCAACCCTTATGTGTTTCTA
1 TTTAGCTCTCATGAGCTTCTGTTTAGCTAATATGAGCTTCCGTTCAACCCTTATGAGGTTCTA
98920153 TTTAGCTCTCATGAGCTTCTGTTTAGC
1 TTTAGCTCTCATGAGCTTCTGTTTAGC
98920180 CTTCGGGTTT
Statistics
Matches: 68, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
63 68 1.00
ACGTcount: A:0.18, C:0.21, G:0.16, T:0.45
Consensus pattern (63 bp):
TTTAGCTCTCATGAGCTTCTGTTTAGCTAATATGAGCTTCCGTTCAACCCTTATGAGGTTCTA
Found at i:98920179 original size:21 final size:21
Alignment explanation
Indices: 98920039--98920177 Score: 107
Period size: 21 Copynumber: 6.6 Consensus size: 21
98920029 TAGCTCTCAC
* **
98920039 GAGCTTCTATTTAACTAATAT
1 GAGCTTCTGTTTAACTCTTAT
* * *
98920060 GAGTTTCTGTTCAACTCTTTT
1 GAGCTTCTGTTTAACTCTTAT
* *
98920081 GAGGTTCTGTTTAACCCTTAT
1 GAGCTTCTGTTTAACTCTTAT
* * *
98920102 GGGTTTCTGTTTAGCTCTTAT
1 GAGCTTCTGTTTAACTCTTAT
* * *
98920123 GAGCTTCCGTTCAACCCTTAT
1 GAGCTTCTGTTTAACTCTTAT
* * * * *
98920144 GTGTTTCTATTTAGCTCTCAT
1 GAGCTTCTGTTTAACTCTTAT
98920165 GAGCTTCTGTTTA
1 GAGCTTCTGTTTA
98920178 GCCTTCGGGT
Statistics
Matches: 87, Mismatches: 31, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 87 1.00
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (21 bp):
GAGCTTCTGTTTAACTCTTAT
Found at i:98924581 original size:14 final size:14
Alignment explanation
Indices: 98924562--98924605 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
98924552 AAAGTTAATA
98924562 AATATTATTTATTT
1 AATATTATTTATTT
98924576 AATATTA-TTA---
1 AATATTATTTATTT
98924586 AATATTATTTATTT
1 AATATTATTTATTT
98924600 AATATT
1 AATATT
98924606 TACGAGTCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
10 7 0.27
11 3 0.12
13 3 0.12
14 13 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
AATATTATTTATTT
Found at i:98924587 original size:24 final size:24
Alignment explanation
Indices: 98924560--98924605 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
98924550 AGAAAGTTAA
98924560 TAAATATTATTTATTTAATATTAT
1 TAAATATTATTTATTTAATATTAT
98924584 TAAATATTATTTATTTAATATT
1 TAAATATTATTTATTTAATATT
98924606 TACGAGTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TAAATATTATTTATTTAATATTAT
Found at i:98926895 original size:18 final size:17
Alignment explanation
Indices: 98926862--98926900 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
98926852 TTGTATAAAT
98926862 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
98926880 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
98926897 TGTG
1 TGTG
98926901 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:98927021 original size:8 final size:8
Alignment explanation
Indices: 98927008--98927036 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
98926998 CACTAGAGAC
98927008 CAGTGTTA
1 CAGTGTTA
98927016 CAGTGTTA
1 CAGTGTTA
98927024 CAGTGTTA
1 CAGTGTTA
98927032 CAGTG
1 CAGTG
98927037 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:98927150 original size:23 final size:23
Alignment explanation
Indices: 98927123--98927198 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
98927113 AGTGTTATTG
98927123 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
98927146 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
98927169 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
98927192 ATCAGTG
1 ATCAGTG
98927199 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:98934232 original size:18 final size:17
Alignment explanation
Indices: 98934199--98934237 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
98934189 TTGTATAAAT
98934199 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
98934217 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
98934234 TGTG
1 TGTG
98934238 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:98934355 original size:8 final size:8
Alignment explanation
Indices: 98934342--98934370 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
98934332 CACTAGAGAC
98934342 CAGTGTTA
1 CAGTGTTA
98934350 CAGTGTTA
1 CAGTGTTA
98934358 CAGTGTTA
1 CAGTGTTA
98934366 CAGTG
1 CAGTG
98934371 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:98934484 original size:23 final size:23
Alignment explanation
Indices: 98934457--98934532 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
98934447 AGTGTTATTG
98934457 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
98934480 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
98934503 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
98934526 ATCAGTG
1 ATCAGTG
98934533 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:98946910 original size:26 final size:26
Alignment explanation
Indices: 98946880--98946987 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
98946870 TGAAATTCCC
98946880 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
98946906 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
98946932 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
98946958 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
98946984 ATCA
1 ATCA
98946988 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:98947262 original size:13 final size:13
Alignment explanation
Indices: 98947244--98947270 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
98947234 TCTTAAGCTT
98947244 GGGCCTTCTAGAG
1 GGGCCTTCTAGAG
98947257 GGGCCTTCTAGAG
1 GGGCCTTCTAGAG
98947270 G
1 G
98947271 CCCACTAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.22, G:0.41, T:0.22
Consensus pattern (13 bp):
GGGCCTTCTAGAG
Found at i:98947858 original size:26 final size:26
Alignment explanation
Indices: 98947829--98947881 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
98947819 CAATTTAGTC
98947829 ATTAAATGTTAGTTTTGATAAGATGT
1 ATTAAATGTTAGTTTTGATAAGATGT
*
98947855 ATTAAATGTTAGTTTTGATAATATGT
1 ATTAAATGTTAGTTTTGATAAGATGT
98947881 A
1 A
98947882 AATCATACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (26 bp):
ATTAAATGTTAGTTTTGATAAGATGT
Found at i:98948264 original size:16 final size:16
Alignment explanation
Indices: 98948243--98948280 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
98948233 ATGTAGGAGC
*
98948243 ACCTTTAGAAACAATT
1 ACCTTTAGAAACAACT
98948259 ACCTTTAGAAACAACT
1 ACCTTTAGAAACAACT
98948275 ACCTTT
1 ACCTTT
98948281 TGGGAACTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (16 bp):
ACCTTTAGAAACAACT
Found at i:98963618 original size:5 final size:5
Alignment explanation
Indices: 98963608--98963638 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
98963598 CTCGAAAATT
*
98963608 TTCGA TTCGA TTCAA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
98963639 CGAATGCTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:98966650 original size:13 final size:13
Alignment explanation
Indices: 98966632--98966658 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
98966622 AATACAAAAC
98966632 TTATGGTAGAAAT
1 TTATGGTAGAAAT
98966645 TTATGGTAGAAAT
1 TTATGGTAGAAAT
98966658 T
1 T
98966659 AGAAACAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (13 bp):
TTATGGTAGAAAT
Found at i:98970545 original size:27 final size:27
Alignment explanation
Indices: 98970514--98970691 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
98970504 TAAATTGTAC
*
98970514 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * *
98970541 TGCACTAAGTGTGCGAAATAAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
98970567 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * *
98970595 GGCACTAAGTGTGCGAGTTTAACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
98970623 AGCACTAAGTGTGCGACTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
98970650 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
98970677 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
98970692 GACTCAATAT
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 102 0.82
28 22 0.18
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:98970655 original size:82 final size:81
Alignment explanation
Indices: 98970515--98970670 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
98970505 AAATTGTACA
* * *
98970515 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATAAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAAGTGT
98970580 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
98970596 GCACTAAGTGTGCGAGTTTAACTATGTAGCACTAAGTGTGCGACTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGAT-GCACTAAGT
*
98970660 GTGCGAGTTGA
64 GTGCGAATTGA
98970671 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:98970682 original size:82 final size:81
Alignment explanation
Indices: 98970511--98970691 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
98970501 GATTAAATTG
* * *
98970511 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATAAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAA
98970576 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
98970592 TGCGGCACTAAGTGTGCGAGTTTAACTATGTAGCACTAAGTGTGCGACTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGAT-GCACT
* **
98970656 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
98970674 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
98970692 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:98976342 original size:16 final size:16
Alignment explanation
Indices: 98976321--98976359 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
98976311 GTTTGGTTCA
98976321 CTGTAATAGAAGAGAG
1 CTGTAATAGAAGAGAG
* *
98976337 CTGTAATTGAATAGAG
1 CTGTAATAGAAGAGAG
*
98976353 CTATAAT
1 CTGTAAT
98976360 CAGTATTTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (16 bp):
CTGTAATAGAAGAGAG
Found at i:98976621 original size:35 final size:38
Alignment explanation
Indices: 98976548--98976623 Score: 97
Period size: 35 Copynumber: 2.1 Consensus size: 38
98976538 ATATTTTAAC
* *
98976548 ATAATTATTATTAAGTATAATTTAATAAAATTCTTAAT
1 ATAATTATTATTAAGTATAATTTAATAAAAATCATAAT
98976586 ATAATTATTATT-A-TATGAA-TTAA-AAAAATCATAAT
1 ATAATTATTATTAAGTAT-AATTTAATAAAAATCATAAT
98976621 ATA
1 ATA
98976624 TAATACTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
35 13 0.37
36 7 0.20
37 3 0.09
38 12 0.34
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (38 bp):
ATAATTATTATTAAGTATAATTTAATAAAAATCATAAT
Found at i:98979720 original size:14 final size:15
Alignment explanation
Indices: 98979693--98979721 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
98979683 AATTTTATGA
98979693 ATTTCATGATGTATT
1 ATTTCATGATGTATT
98979708 ATTTCAT-ATGTATT
1 ATTTCATGATGTATT
98979722 GATGATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (15 bp):
ATTTCATGATGTATT
Found at i:98979914 original size:50 final size:50
Alignment explanation
Indices: 98979839--98980015 Score: 259
Period size: 50 Copynumber: 3.5 Consensus size: 50
98979829 CCATGGCAAC
98979839 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
98979889 AAGTGATAAGT-AGTAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGA-TAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
98979939 AAGTGATAAGTGATAGTTTCGGCTACACCTATCTGATCAGGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
98979989 CAAGTGACAAGT-AGTAGCTTCTGCTAC
1 -AAGTGATAAGTGA-TAGCTTCGGCTAC
98980016 CTGATCAGTG
Statistics
Matches: 115, Mismatches: 8, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.80
51 22 0.19
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:98980040 original size:31 final size:31
Alignment explanation
Indices: 98979991--98980170 Score: 279
Period size: 31 Copynumber: 5.8 Consensus size: 31
98979981 ACAAATGACA
* * *
98979991 AGTGACAAGTAGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
98980022 AGTGAAAAGTGGTGGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
98980053 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
98980084 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
98980115 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
98980146 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
98980171 AAGTGACAAG
Statistics
Matches: 139, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 139 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:98980258 original size:47 final size:46
Alignment explanation
Indices: 98980189--98980311 Score: 156
Period size: 47 Copynumber: 2.7 Consensus size: 46
98980179 AGTAATTTCC
* *
98980189 GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTATT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGAT-TT
* *
98980236 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATTT
** * **
98980282 GCGTAAGACCATAACTGGGCCATGGCATCG
1 GTATAAGACCATATCTGGGATATGGCATCG
98980312 ATATATGAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (46 bp):
GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATTT
Found at i:98980349 original size:42 final size:42
Alignment explanation
Indices: 98980284--98980396 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 42
98980274 TGTGATTTGC
* * * *
98980284 GTAAGACCATAACTGGGCCATGGCATCGATATATG-AATATGT
1 GTAAGACCATAGCTGGACTATGGCATCGAT-TATGAAAGATGT
98980326 GTAAGACCATAGCTGGACTATGGCATC-ATTATGTAAAGATGT
1 GTAAGACCATAGCTGGACTATGGCATCGATTATG-AAAGATGT
* *
98980368 GTAAGACCATAGTTGAACTATGGCATCGA
1 GTAAGACCATAGCTGGACTATGGCATCGA
98980397 CAAAACGAAG
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
40 4 0.06
41 2 0.03
42 55 0.89
43 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.27
Consensus pattern (42 bp):
GTAAGACCATAGCTGGACTATGGCATCGATTATGAAAGATGT
Found at i:98981393 original size:43 final size:43
Alignment explanation
Indices: 98981344--98981432 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
98981334 TCCCAAAAAA
98981344 TTATGATATTAAAGATTTATTCAAAGTCCTCTAATTTTGCACT
1 TTATGATATTAAAGATTTATTCAAAGTCCTCTAATTTTGCACT
*
98981387 TTATGATATTAAAGATTTTTTCAAAGTCCTCTAATTTTGCACT
1 TTATGATATTAAAGATTTATTCAAAGTCCTCTAATTTTGCACT
98981430 TTA
1 TTA
98981433 CTATGAGGAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.46
Consensus pattern (43 bp):
TTATGATATTAAAGATTTATTCAAAGTCCTCTAATTTTGCACT
Found at i:98982724 original size:23 final size:25
Alignment explanation
Indices: 98982679--98982733 Score: 78
Period size: 23 Copynumber: 2.2 Consensus size: 25
98982669 TATGAAACTT
98982679 TTTAATTTACCTTTTAAAAATTCGATC
1 TTTAATTTACCTTTT--AAATTCGATC
98982706 TTTAATTTACC-TTT-AATTCGATC
1 TTTAATTTACCTTTTAAATTCGATC
98982729 TTTAA
1 TTTAA
98982734 AAGTTGATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 14 0.50
26 3 0.11
27 11 0.39
ACGTcount: A:0.31, C:0.15, G:0.04, T:0.51
Consensus pattern (25 bp):
TTTAATTTACCTTTTAAATTCGATC
Found at i:98985530 original size:63 final size:63
Alignment explanation
Indices: 98985461--98985580 Score: 231
Period size: 63 Copynumber: 1.9 Consensus size: 63
98985451 TAAAACCTTA
98985461 AATTGTAAGTATTAAGGGTTAAAAAAGTTATTCTATCTATTTTATAATTGCCATATCTATTTT
1 AATTGTAAGTATTAAGGGTTAAAAAAGTTATTCTATCTATTTTATAATTGCCATATCTATTTT
*
98985524 AATTGTAAGTATTAAGGGTTAAAAAATTTATTCTATCTATTTTATAATTGCCATATC
1 AATTGTAAGTATTAAGGGTTAAAAAAGTTATTCTATCTATTTTATAATTGCCATATC
98985581 AACAAAATTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.45
Consensus pattern (63 bp):
AATTGTAAGTATTAAGGGTTAAAAAAGTTATTCTATCTATTTTATAATTGCCATATCTATTTT
Found at i:98998864 original size:123 final size:123
Alignment explanation
Indices: 98998642--98998866 Score: 342
Period size: 123 Copynumber: 1.8 Consensus size: 123
98998632 TTAACTCTGC
* * * ** *
98998642 GAGCTCTTATAATGTCAAATGGGAACATAGGTCTGCTAGTTGTTTTAGAAGTTGTGATTTTAAAC
1 GAGCTCTTATAATGTCAAATGAGAACATAGGTCTGCTAGCTATTTTAGAAGTTGCAATCTTAAAC
*
98998707 CGTCAAACCTTTATGACATCAGCTAGGAGCGTAGGTCTGCTAGCTGTGTCAGAGCTAT
66 CGTCAAACCTTTATGACATCAGCTAGGAGAGTAGGTCTGCTAGCTGTGTCAGAGCTAT
* * * *
98998765 GAGCTCTTATAATGTCAACTGAGAGCGTAGGTCTGCTAGCTATTTTAGAGGTTGCAATCTTAAAC
1 GAGCTCTTATAATGTCAAATGAGAACATAGGTCTGCTAGCTATTTTAGAAGTTGCAATCTTAAAC
*
98998830 CGTCAAACCTTTGTGACATCAGCTAGGAGAGTAGGTC
66 CGTCAAACCTTTATGACATCAGCTAGGAGAGTAGGTC
98998867 CGTTAGTTGC
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
123 90 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (123 bp):
GAGCTCTTATAATGTCAAATGAGAACATAGGTCTGCTAGCTATTTTAGAAGTTGCAATCTTAAAC
CGTCAAACCTTTATGACATCAGCTAGGAGAGTAGGTCTGCTAGCTGTGTCAGAGCTAT
Found at i:98999060 original size:69 final size:68
Alignment explanation
Indices: 98998787--98999080 Score: 247
Period size: 69 Copynumber: 4.3 Consensus size: 68
98998777 TGTCAACTGA
* * * *
98998787 GAGCGTAGGTCTGCTAGCTATTTTAGAGGTTGCAATCTTAAACCGTCAAACCTTTGTGACATCAG
1 GAGCGTAGGTCTGCTAGCTACTTTAGAGGTTGCGATCTTAAACCGTCAAACCTTTATAACATCAG
98998852 CTAG
66 CT-G
* * * * * * * * * *
98998856 GAGAGTAGGTCCGTTAGTTGCTTTGGAGGTTGCGATCTTAAACCGTCAAACCTCTATGATATCAA
1 GAGCGTAGGTCTGCTAGCTACTTTAGAGGTTGCGATCTTAAACCGTCAAACCTTTATAACATCAG
98998921 CTGG
66 CT-G
* * * * * * * **
98998925 GAGCGTAGGTCTGCTAGCT-GTGTCAGAGCTAT--GAGCTT-AACTCTGT-GAGCTTTTATAATG
1 GAGCGTAGGTCTGCTAGCTACT-TTAGAGGT-TGCGATCTTAAAC-C-GTCAAACCTTTATAACA
*
98998985 CCAGCTG
62 TCAGCTG
*
98998992 GAAGCGTAGGTCTGCTAGCTACTTTAGAGGTTGCGACCTTAAACCGTCAAACCTTTATAACATCA
1 G-AGCGTAGGTCTGCTAGCTACTTTAGAGGTTGCGATCTTAAACCGTCAAACCTTTATAACATCA
98999057 GCTG
65 GCTG
* *
98999061 CAGCGTAGGTCCGCTAGCTA
1 GAGCGTAGGTCTGCTAGCTA
98999081 TGCCGAAGCT
Statistics
Matches: 173, Mismatches: 42, Indels: 21
0.73 0.18 0.09
Matches are distributed among these distances:
67 6 0.03
68 63 0.36
69 100 0.58
70 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (68 bp):
GAGCGTAGGTCTGCTAGCTACTTTAGAGGTTGCGATCTTAAACCGTCAAACCTTTATAACATCAG
CTG
Found at i:98999138 original size:136 final size:137
Alignment explanation
Indices: 98998876--98999139 Score: 336
Period size: 136 Copynumber: 1.9 Consensus size: 137
98998866 CCGTTAGTTG
* * * * * *
98998876 CTTTGGAGGTTGCGATCTTAAACCGTCAAACCTCTATGATATCAACTGGGAGCGTAGGTCTGCTA
1 CTTTAGAGGTTGCGACCTTAAACCGTCAAACCTCTATAACATCAACTGGCAGCGTAGGTCCGCTA
* * * * * * * *
98998941 GCTGTGTCAGAGCTATGAGCTTAACTCTGTGAGCTTTTATAATGCCAGCTGGAAGCGTAGGTCTG
66 GCTATGCCAGAGCTACGAGCTTAACTCTGCGAGCTCTTATAATGCCAACTAGAAGCATAGGTCTG
98999006 CTAGCTA
131 CTAGCTA
* *
98999013 CTTTAGAGGTTGCGACCTTAAACCGTCAAACCTTTATAACATCAGCT-GCAGCGTAGGTCCGCTA
1 CTTTAGAGGTTGCGACCTTAAACCGTCAAACCTCTATAACATCAACTGGCAGCGTAGGTCCGCTA
*
98999077 GCTATGCC-GAAGCTACGAGCTTAACTCTGCGAGCTCTTATAATGTCAACTA-AGAGCATAGGTC
66 GCTATGCCAG-AGCTACGAGCTTAACTCTGCGAGCTCTTATAATGCCAACTAGA-AGCATAGGTC
98999140 CACTAGTTGT
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
135 2 0.02
136 65 0.60
137 41 0.38
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (137 bp):
CTTTAGAGGTTGCGACCTTAAACCGTCAAACCTCTATAACATCAACTGGCAGCGTAGGTCCGCTA
GCTATGCCAGAGCTACGAGCTTAACTCTGCGAGCTCTTATAATGCCAACTAGAAGCATAGGTCTG
CTAGCTA
Found at i:99006224 original size:43 final size:43
Alignment explanation
Indices: 99006177--99006417 Score: 261
Period size: 43 Copynumber: 5.6 Consensus size: 43
99006167 AGAAAGTGTA
* ***
99006177 GCTAAA-AACGTGACCTTTAGTGGCTTTTTTTCACACAAACGCT
1 GCTAAAGAACGTGACCTTTAGCGGC-GCCTTTCACACAAACGCT
* * * * * * * *
99006220 GCTAAACAATGTGACCTTTAGCGACACTTTTCACAGAAATGCC
1 GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCT
*
99006263 GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCC
1 GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCT
* * * *
99006306 ACTAAAGAACGTGACTTTTAACGACGCCTTTCACACAAACGCT
1 GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCT
* * *
99006349 GCTAAAGAACGTGACTTTTAGCGGTGCCTTTCACAAAAACG-T
1 GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCT
*
99006391 CGCTAAAGAACATGACCTTTAGCGGCG
1 -GCTAAAGAACGTGACCTTTAGCGGCG
99006418 TTTTTAGTAA
Statistics
Matches: 168, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
42 1 0.01
43 152 0.90
44 15 0.09
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCT
Found at i:99006432 original size:129 final size:129
Alignment explanation
Indices: 99006205--99006439 Score: 319
Period size: 129 Copynumber: 1.8 Consensus size: 129
99006195 AGTGGCTTTT
* * * *
99006205 TTTCACACAAACGCTGCTAAACAATGTGACCTTTAGCGACACTTTTCACAGAAATGCCGCTAAAG
1 TTTCACACAAACGCTGCTAAACAACGTGACCTTTAGCGACACCTTTCACAAAAACGCCGCTAAAG
* *
99006270 AACGTGACCTTTAGCGGCGCCTTTCACACAAACGCCACTAAAGAACGTGACTTTTAACGACGCC
66 AACATGACCTTTAGCGGCGCCTTTCACAAAAACGCCACTAAAGAACGTGACTTTTAACGACGCC
* * *** *
99006334 TTTCACACAAACGCTGCTAAAGAACGTGACTTTTAGCGGTGCCTTTCACAAAAACGTCGCTAAAG
1 TTTCACACAAACGCTGCTAAACAACGTGACCTTTAGCGACACCTTTCACAAAAACGCCGCTAAAG
* * *
99006399 AACATGACCTTTAGCGGCG-TTTTTAGTAAAAACGCCACTAA
66 AACATGACCTTTAGCGGCGCCTTTCA-CAAAAACGCCACTAA
99006440 TTTTAGCAGA
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
128 4 0.04
129 86 0.96
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (129 bp):
TTTCACACAAACGCTGCTAAACAACGTGACCTTTAGCGACACCTTTCACAAAAACGCCGCTAAAG
AACATGACCTTTAGCGGCGCCTTTCACAAAAACGCCACTAAAGAACGTGACTTTTAACGACGCC
Found at i:99007238 original size:13 final size:14
Alignment explanation
Indices: 99007198--99007240 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
99007188 ACTAACGACG
99007198 AATTAAACCATTAT
1 AATTAAACCATTAT
*
99007212 AACTAAACCATTAT
1 AATTAAACCATTAT
99007226 AATTAAA-CATTAT
1 AATTAAACCATTAT
99007239 AA
1 AA
99007241 ATATTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 8 0.30
14 19 0.70
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:99013437 original size:19 final size:19
Alignment explanation
Indices: 99013413--99013449 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
99013403 GTTGCGAGCT
99013413 CCTTTGGCGAACCCTCACC
1 CCTTTGGCGAACCCTCACC
99013432 CCTTTGGCGAACCCTCAC
1 CCTTTGGCGAACCCTCAC
99013450 TACAAGGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.46, G:0.16, T:0.22
Consensus pattern (19 bp):
CCTTTGGCGAACCCTCACC
Found at i:99017884 original size:18 final size:19
Alignment explanation
Indices: 99017851--99017886 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
99017841 TTAAATGAAT
99017851 TTAATTAAATAATATGATA
1 TTAATTAAATAATATGATA
*
99017870 TTAATTTAA-AATATGAT
1 TTAATTAAATAATATGAT
99017887 TTTTAGTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (19 bp):
TTAATTAAATAATATGATA
Found at i:99036700 original size:25 final size:22
Alignment explanation
Indices: 99036664--99036711 Score: 53
Period size: 22 Copynumber: 2.0 Consensus size: 22
99036654 TAATGAATTT
99036664 TTTTAGATAGATAACTATTATTAAA
1 TTTTAGATAGAT---TATTATTAAA
99036689 TTTTA-ATAAGATTATTATTAAA
1 TTTTAGAT-AGATTATTATTAAA
99036711 T
1 T
99036712 ATAATTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
22 11 0.50
24 2 0.09
25 9 0.41
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (22 bp):
TTTTAGATAGATTATTATTAAA
Found at i:99036760 original size:57 final size:58
Alignment explanation
Indices: 99036688--99036799 Score: 183
Period size: 57 Copynumber: 1.9 Consensus size: 58
99036678 CTATTATTAA
*
99036688 ATTTTAATAAGATTATTATTAAATATAATTTAATAAAAA-AATAAATAATTTAATCAT
1 ATTTTAATAAGATTATCATTAAATATAATTTAATAAAAATAATAAATAATTTAATCAT
*
99036745 ATTTTAATATA-ATTATCATTAAATATAATTTAATAAAAATAATATATAATTTAAT
1 ATTTTAATA-AGATTATCATTAAATATAATTTAATAAAAATAATAAATAATTTAAT
99036800 AATTGCACAC
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
57 36 0.71
58 15 0.29
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.44
Consensus pattern (58 bp):
ATTTTAATAAGATTATCATTAAATATAATTTAATAAAAATAATAAATAATTTAATCAT
Found at i:99038404 original size:30 final size:30
Alignment explanation
Indices: 99038370--99038432 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
99038360 ATTTATTTTA
*
99038370 TTGTTAATTTTCTTATTATTTTAAAGGCAT
1 TTGTTAATTTTCTTATTATTTTAAAAGCAT
*
99038400 TTGTTAATTTTTTTATTATTTTAAAAGCAT
1 TTGTTAATTTTCTTATTATTTTAAAAGCAT
99038430 TTG
1 TTG
99038433 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAAGCAT
Found at i:99038571 original size:11 final size:12
Alignment explanation
Indices: 99038555--99038588 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
99038545 ATATATATTT
99038555 AAAAATAATA-A
1 AAAAATAATATA
99038566 AAAAATAATATA
1 AAAAATAATATA
99038578 AAAAATTAATA
1 AAAAA-TAATA
99038589 CAGGCGGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 6 0.29
13 5 0.24
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAATAATATA
Found at i:99045517 original size:22 final size:22
Alignment explanation
Indices: 99045475--99045517 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
99045465 TATCCATATA
*
99045475 ATAATAACAAAATAACGACAAT
1 ATAATAACAAAATAACAACAAT
* *
99045497 ATAATAATAAAATGACAACAA
1 ATAATAACAAAATAACAACAA
99045518 AACAGTGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.65, C:0.12, G:0.05, T:0.19
Consensus pattern (22 bp):
ATAATAACAAAATAACAACAAT
Found at i:99045551 original size:21 final size:22
Alignment explanation
Indices: 99045516--99045556 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
99045506 AAATGACAAC
99045516 AAAACAGTGGGAAAACAACAGG
1 AAAACAGTGGGAAAACAACAGG
*
99045538 AAAATAGT-GGAAAACAACA
1 AAAACAGTGGGAAAACAACA
99045557 TTTTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.59, C:0.12, G:0.22, T:0.07
Consensus pattern (22 bp):
AAAACAGTGGGAAAACAACAGG
Found at i:99049753 original size:16 final size:17
Alignment explanation
Indices: 99049732--99049775 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
99049722 TTAATCACTT
99049732 TAATATTAAATT-AATG
1 TAATATTAAATTAAATG
* *
99049748 TAATATTAGATTAAATT
1 TAATATTAAATTAAATG
99049765 TAATATTAAAT
1 TAATATTAAAT
99049776 CTTATTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (17 bp):
TAATATTAAATTAAATG
Found at i:99051889 original size:5 final size:5
Alignment explanation
Indices: 99051879--99051917 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
99051869 GCCTAAGATG
* *
99051879 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
99051918 GTTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:99052249 original size:23 final size:23
Alignment explanation
Indices: 99052219--99052267 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
99052209 CGAACACACC
99052219 ATAGCTCACAAGAGCATCCCGAT
1 ATAGCTCACAAGAGCATCCCGAT
*
99052242 ATAGCTCACATGAGCATCCCGAT
1 ATAGCTCACAAGAGCATCCCGAT
99052265 ATA
1 ATA
99052268 AGTTCTCCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (23 bp):
ATAGCTCACAAGAGCATCCCGAT
Found at i:99055554 original size:42 final size:41
Alignment explanation
Indices: 99055400--99055555 Score: 140
Period size: 42 Copynumber: 3.7 Consensus size: 41
99055390 TATGTTATCG
*
99055400 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GATTCA
* * * * *
99055442 TGTATAAGACCATGTCTGGGACATCGACATC-ATATTTGATTTCG
1 TG--TAAGACCACGTCTGGGACGTTGGCATCGATA-TTGA-TTCA
*
99055486 TGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTGATT-CA
99055528 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
99055556 TGTCCGATTT
Statistics
Matches: 90, Mismatches: 13, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
41 3 0.03
42 50 0.56
43 8 0.09
44 27 0.30
45 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTCA
Found at i:99058159 original size:46 final size:46
Alignment explanation
Indices: 99057935--99058157 Score: 322
Period size: 46 Copynumber: 4.8 Consensus size: 46
99057925 TTTGACATGA
* * * * * *
99057935 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCAGGC
** *
99057981 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
99058027 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
* *
99058073 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
*
99058119 TGCCATGGTATCTTTCAACCATGGTCTTCCACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
99058158 ATTAGAGAGC
Statistics
Matches: 164, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 160 0.98
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
Found at i:99062172 original size:45 final size:46
Alignment explanation
Indices: 99062057--99062181 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
99062047 TTGAGATCAT
*
99062057 AACTCGTTGAGTTGCGTTCCGAGTTCACTTATGGATGCAAGCATCCG
1 AACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAAGCACCCG
* ** *
99062104 AACTCATTGAGTTATGTTCCGAGTTCATTATGGATGTGAA-CACCCG
1 AACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATG-CAAGCACCCG
*
99062150 AGA-T-GTTGAGTTGCGTTTCGAGTTCATTATGG
1 A-ACTCGTTGAGTTGCGTTCCGAGTTCATTATGG
99062182 GTGAAATCAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
45 24 0.36
46 16 0.24
47 27 0.40
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (46 bp):
AACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAGCACCCG
Found at i:99064464 original size:16 final size:16
Alignment explanation
Indices: 99064443--99064473 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
99064433 TTATGCATGC
*
99064443 AAAATATAAAAGACAG
1 AAAATAAAAAAGACAG
99064459 AAAATAAAAAAGACA
1 AAAATAAAAAAGACA
99064474 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.06, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATAAAAAAGACAG
Found at i:99069955 original size:19 final size:19
Alignment explanation
Indices: 99069931--99070015 Score: 73
Period size: 19 Copynumber: 4.4 Consensus size: 19
99069921 TCATTGACAC
*
99069931 TAAAAATTATTTTAAATTA
1 TAAAAATTATTTAAAATTA
* *
99069950 TAAAAAATATTTAAAATGA
1 TAAAAATTATTTAAAATTA
* **
99069969 AAAAAACTTA-CAAAAATTA
1 TAAAAA-TTATTTAAAATTA
*
99069988 TAAAAACTATTTAAAAAATTA
1 TAAAAATTATTT--AAAATTA
99070009 TAAAAAT
1 TAAAAAT
99070016 ATATAATTTA
Statistics
Matches: 49, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
18 2 0.04
19 32 0.65
20 2 0.04
21 13 0.27
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (19 bp):
TAAAAATTATTTAAAATTA
Found at i:99070003 original size:29 final size:29
Alignment explanation
Indices: 99069969--99070051 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 29
99069959 TTTAAAATGA
99069969 AAAAAACTTACAAAAATTATAAAAACTATTT
1 AAAAAA-TTA-AAAAATTATAAAAACTATTT
* **
99070000 AAAAAATTATAAAAA-TATATAATTTATTT
1 AAAAAATTA-AAAAATTATAAAAACTATTT
* *
99070029 AAAATATTAAAAAATTGTAAAAA
1 AAAAAATTAAAAAATTATAAAAA
99070052 ACCGTTAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
28 5 0.12
29 24 0.56
30 8 0.19
31 6 0.14
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.33
Consensus pattern (29 bp):
AAAAAATTAAAAAATTATAAAAACTATTT
Found at i:99070445 original size:38 final size:38
Alignment explanation
Indices: 99070392--99070469 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
99070382 GAGTCGTTCT
*
99070392 ATGTCTTTCAATCTGAAAATCTTAGGCGCTTCTTCTCC
1 ATGTCTTTCAATCTGAAAATCTAAGGCGCTTCTTCTCC
*
99070430 ATGTCTTTCAGTCTGAAAATCTAAGGCGCTTCTTCTCC
1 ATGTCTTTCAATCTGAAAATCTAAGGCGCTTCTTCTCC
99070468 AT
1 AT
99070470 TGCACACCGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (38 bp):
ATGTCTTTCAATCTGAAAATCTAAGGCGCTTCTTCTCC
Found at i:99073616 original size:18 final size:18
Alignment explanation
Indices: 99073596--99073629 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
99073586 TTTTACTAAT
99073596 TTTTTA-ATATTTTAAAA
1 TTTTTATATATTTTAAAA
99073613 TTTTTATATATTTTAAA
1 TTTTTATATATTTTAAA
99073630 TAAATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTATATATTTTAAAA
Found at i:99083689 original size:30 final size:30
Alignment explanation
Indices: 99083653--99083709 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
99083643 CTTATGACTA
99083653 TTGATGTAATGCAATTTCAGTTTAACACTG
1 TTGATGTAATGCAATTTCAGTTTAACACTG
99083683 TTGATGTAATGCAATTTCAGTTTAACA
1 TTGATGTAATGCAATTTCAGTTTAACA
99083710 ATAAAGAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (30 bp):
TTGATGTAATGCAATTTCAGTTTAACACTG
Found at i:99083975 original size:91 final size:88
Alignment explanation
Indices: 99083784--99083991 Score: 244
Period size: 91 Copynumber: 2.3 Consensus size: 88
99083774 CAGACACTCC
* *
99083784 AGTTTGTGGATAAACCA-CAAGTGTTGCAAGTTAATACGCTGCCAATAGTTGTGAATACACAATG
1 AGTTTGTGGATAAACCACCAA-TGTT-TAAGTTAATACGCTGCCAATAGTTATGAATACACAATG
*
99083848 GGTTTGCAGATAAAAGCTGTTAGTAAA
64 GGTTTGCAGATAAAAGC--TTACTAAA
*
99083875 AG-TTGTGGATAAACCACCAATGTTTATAGGTTAATACGTTGCCAATAGGTTATGAATACACAAT
1 AGTTTGTGGATAAACCACCAATGTTTA-A-GTTAATACGCTGCCAATA-GTTATGAATACACAAT
*
99083939 GGGTTTGTAGGA-AAAAGC-TACTAATA
63 GGGTTTGCA-GATAAAAGCTTACTAA-A
* *
99083965 AGTTTGTGGATGAACCACCAGTGTTTA
1 AGTTTGTGGATAAACCACCAATGTTTA
99083992 CAGATAAACT
Statistics
Matches: 103, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
89 6 0.06
90 22 0.21
91 44 0.43
92 29 0.28
93 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.30
Consensus pattern (88 bp):
AGTTTGTGGATAAACCACCAATGTTTAAGTTAATACGCTGCCAATAGTTATGAATACACAATGGG
TTTGCAGATAAAAGCTTACTAAA
Found at i:99085367 original size:37 final size:37
Alignment explanation
Indices: 99085289--99085367 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 37
99085279 AAATAATAAT
** *
99085289 AAATAATATTCAAATAATTAAATATAATGATATTTGT
1 AAATAATATTCAAATAATTAAATATAATGATACATGA
* * *
99085326 AAATAATATTTAAATAGTTTAATATTAATGATACAT-A
1 AAATAATATTCAAATAATTAAATA-TAATGATACATGA
99085363 AAATA
1 AAATA
99085368 TAAATAAACC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
37 26 0.74
38 9 0.26
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (37 bp):
AAATAATATTCAAATAATTAAATATAATGATACATGA
Found at i:99088422 original size:3 final size:3
Alignment explanation
Indices: 99088416--99088449 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
99088406 AATATTATAA
*
99088416 AAG AAG AAG TAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
99088450 TGCTTTAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:99088589 original size:10 final size:10
Alignment explanation
Indices: 99088574--99088623 Score: 55
Period size: 10 Copynumber: 4.6 Consensus size: 10
99088564 AAAATAATAT
99088574 AATTTTTTTA
1 AATTTTTTTA
*
99088584 AATTTTTATAA
1 AATTTTT-TTA
99088595 ATATTTTTTTATA
1 A-A-TTTTTT-TA
99088608 AATTTTTTTA
1 AATTTTTTTA
99088618 AATTTT
1 AATTTT
99088624 GTTGAGAGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
10 15 0.44
11 9 0.26
12 3 0.09
13 7 0.21
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
AATTTTTTTA
Found at i:99088605 original size:14 final size:13
Alignment explanation
Indices: 99088586--99088616 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
99088576 TTTTTTTAAA
99088586 TTTTTATAAATATT
1 TTTTTATAAAT-TT
99088600 TTTTTATAAATTT
1 TTTTTATAAATTT
99088613 TTTT
1 TTTT
99088617 AAATTTTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTTATAAATTT
Found at i:99088995 original size:42 final size:43
Alignment explanation
Indices: 99088914--99088995 Score: 107
Period size: 42 Copynumber: 1.9 Consensus size: 43
99088904 TTTTACTTTA
* *
99088914 TTTTTAGTTTTTAATTTTAAAAGTTATGTAATAATATTTTATT
1 TTTTTAATTTTTAATTTTAAAAGTTATGTAATAAAATTTTATT
99088957 TTTTTAATTTTT-ATTTT-AAA-TTATGTCACATAAAATTTT
1 TTTTTAATTTTTAATTTTAAAAGTTATGT-A-ATAAAATTTT
99088996 TCGTGTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
40 6 0.17
41 4 0.11
42 14 0.40
43 11 0.31
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (43 bp):
TTTTTAATTTTTAATTTTAAAAGTTATGTAATAAAATTTTATT
Found at i:99102256 original size:14 final size:15
Alignment explanation
Indices: 99102234--99102310 Score: 61
Period size: 14 Copynumber: 5.0 Consensus size: 15
99102224 CAATCAAACA
99102234 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
99102248 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
99102263 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
99102283 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
*
99102297 ACAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
99102311 ACTGGCAATC
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
14 22 0.43
15 15 0.29
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:99102275 original size:20 final size:20
Alignment explanation
Indices: 99102250--99102289 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
99102240 AATATTTTCC
*
99102250 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
99102270 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
99102290 TCATTTTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:99102295 original size:34 final size:35
Alignment explanation
Indices: 99102238--99102304 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
99102228 CAAACACCAG
*
99102238 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
99102273 AAAACATTTTCCAG-AAATCATTTTACAGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
99102305 TATTTTACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 18 0.58
35 13 0.42
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:99113608 original size:19 final size:19
Alignment explanation
Indices: 99113569--99113608 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
99113559 TTGGTTAAGC
* *
99113569 TTTATAATATTTAATTCTA
1 TTTATAATATTCAAATCTA
*
99113588 TTTATAATATTCAAATGTA
1 TTTATAATATTCAAATCTA
99113607 TT
1 TT
99113609 CGATATAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (19 bp):
TTTATAATATTCAAATCTA
Found at i:99113883 original size:28 final size:26
Alignment explanation
Indices: 99113842--99113897 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 26
99113832 CTAATAATTA
*
99113842 TATATTTTTGTTATTTATTTATGTATTT
1 TATATTTTTGTTATTCATTT-T-TATTT
99113870 TATATTTATT-TTATTCATTTTTATTT
1 TATATTT-TTGTTATTCATTTTTATTT
99113896 TA
1 TA
99113898 AATTAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 7 0.27
27 1 0.04
28 16 0.62
29 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (26 bp):
TATATTTTTGTTATTCATTTTTATTT
Found at i:99113894 original size:19 final size:18
Alignment explanation
Indices: 99113852--99113895 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
99113842 TATATTTTTG
99113852 TTATTTATTTATGTATTT
1 TTATTTATTTATGTATTT
99113870 TATATTTATTTTAT-TCATTT
1 T-TATTTA-TTTATGT-ATTT
99113890 TTATTT
1 TTATTT
99113896 TAAATTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 1 0.04
19 12 0.52
20 10 0.43
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (18 bp):
TTATTTATTTATGTATTT
Found at i:99116214 original size:19 final size:19
Alignment explanation
Indices: 99116190--99116227 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
99116180 ATTTTCTATG
99116190 TTTAAAATATGTAAATTGA
1 TTTAAAATATGTAAATTGA
99116209 TTTAAAATATGTAAATTGA
1 TTTAAAATATGTAAATTGA
99116228 CATGTGTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (19 bp):
TTTAAAATATGTAAATTGA
Found at i:99117416 original size:44 final size:43
Alignment explanation
Indices: 99117347--99117511 Score: 144
Period size: 43 Copynumber: 3.9 Consensus size: 43
99117337 TTCCGATATG
*
99117347 TGATATCGTGTAAGA-TCACATCTGGGACGTTGGCATC-AATT
1 TGATTTCGTGTAAGACTCACATCTGGGACGTTGGCATCGAATT
* *
99117388 TAGTATTTACGTGTAAGACT-ACATCTGGGATGTTGGCATCGTATT
1 T-G-ATTT-CGTGTAAGACTCACATCTGGGACGTTGGCATCGAATT
** **
99117433 TGATTTCGTGTAAGACTC-TGTCTAAGACAG-TGGCATCGATATT
1 TGATTTCGTGTAAGACTCACATCTGGGAC-GTTGGCATCGA-ATT
* * * *
99117476 TGATTACATGTAAGAC-CACGTCTGGGGCGTTGGCAT
1 TGATTTCGTGTAAGACTCACATCTGGGACGTTGGCAT
99117512 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 37 0.37
44 29 0.29
45 5 0.05
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TGATTTCGTGTAAGACTCACATCTGGGACGTTGGCATCGAATT
Found at i:99120051 original size:25 final size:25
Alignment explanation
Indices: 99120022--99120081 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
99120012 TTCAGTTGAA
* *
99120022 AGCCAAAAATGAGAAGGATCCATCT
1 AGCCAAAAACGACAAGGATCCATCT
*
99120047 AGCCAAAAACGACAAGGATCTATCT
1 AGCCAAAAACGACAAGGATCCATCT
**
99120072 AATCAAAAAC
1 AGCCAAAAAC
99120082 ACATGTGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.48, C:0.22, G:0.15, T:0.15
Consensus pattern (25 bp):
AGCCAAAAACGACAAGGATCCATCT
Found at i:99123673 original size:25 final size:25
Alignment explanation
Indices: 99123625--99123673 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
99123615 CATAATTAAA
* * *
99123625 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
99123650 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
99123674 ATGTGTATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:99123683 original size:17 final size:17
Alignment explanation
Indices: 99123646--99123688 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
99123636 TGATTTTGTA
99123646 TATTATGAAATATATTG
1 TATTATGAAATATATTG
99123663 -ATTATG-AATATATGTG
1 TATTATGAAATATAT-TG
*
99123679 TATTAAGAAA
1 TATTATGAAA
99123689 AATGTGATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 7 0.32
16 8 0.36
17 5 0.23
18 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (17 bp):
TATTATGAAATATATTG
Found at i:99126721 original size:28 final size:26
Alignment explanation
Indices: 99126699--99126754 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 26
99126689 TTATTATGGG
*
99126699 ATAT-TATCTTTTAGGAATATATTAT
1 ATATCTATATTTTAGGAATATATTAT
99126724 ATATCTATATATTTAGGAATATATTAT
1 ATATCTATAT-TTTAGGAATATATTAT
99126751 ATAT
1 ATAT
99126755 ATATTTCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 4 0.14
27 20 0.71
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (26 bp):
ATATCTATATTTTAGGAATATATTAT
Found at i:99130639 original size:21 final size:21
Alignment explanation
Indices: 99130614--99130654 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
99130604 AAATGGCGAG
*
99130614 GGAGATAGAGACGATGAGGAT
1 GGAGATAGAGACGAAGAGGAT
* *
99130635 GGAGATGGAGATGAAGAGGA
1 GGAGATAGAGACGAAGAGGA
99130655 CCGAGGTGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.02, G:0.46, T:0.12
Consensus pattern (21 bp):
GGAGATAGAGACGAAGAGGAT
Found at i:99133383 original size:31 final size:31
Alignment explanation
Indices: 99133348--99133409 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
99133338 AAGATTTAAA
99133348 CTTCAAAAACAAGTAACGAGAAAAAGAAACT
1 CTTCAAAAACAAGTAACGAGAAAAAGAAACT
99133379 CTTCAAAAACAAGTAACGAGAAAAAGAAACT
1 CTTCAAAAACAAGTAACGAGAAAAAGAAACT
99133410 TACTTTTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.58, C:0.16, G:0.13, T:0.13
Consensus pattern (31 bp):
CTTCAAAAACAAGTAACGAGAAAAAGAAACT
Found at i:99142470 original size:15 final size:15
Alignment explanation
Indices: 99142452--99142485 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
99142442 ATAAAATTTT
99142452 AAAAAGAAAAAAATA
1 AAAAAGAAAAAAATA
**
99142467 AAAAAGCTAAAAATA
1 AAAAAGAAAAAAATA
99142482 AAAA
1 AAAA
99142486 TTTTCCATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.82, C:0.03, G:0.06, T:0.09
Consensus pattern (15 bp):
AAAAAGAAAAAAATA
Found at i:99150561 original size:35 final size:34
Alignment explanation
Indices: 99150507--99150578 Score: 92
Period size: 35 Copynumber: 2.1 Consensus size: 34
99150497 AATTGAAAGA
*
99150507 GAAAAGAAAATAATTCAATTCC-AATAGAAATAG
1 GAAAAGAAAATAATCCAATTCCGAATAGAAATAG
* *
99150540 GAAAAGAGAGAATAATCCAATTCCGAATTGAAGTAG
1 GAAAAGA-A-AATAATCCAATTCCGAATAGAAATAG
99150576 GAA
1 GAA
99150579 TACAAAAGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 7 0.21
34 1 0.03
35 13 0.39
36 12 0.36
ACGTcount: A:0.53, C:0.10, G:0.18, T:0.19
Consensus pattern (34 bp):
GAAAAGAAAATAATCCAATTCCGAATAGAAATAG
Found at i:99150699 original size:5 final size:5
Alignment explanation
Indices: 99150694--99150734 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
99150684 TTTAATCATA
* *
99150694 AAATA AAATC AAATC AAATC AAATC AAATAA AAATC AAATC
1 AAATC AAATC AAATC AAATC AAATC AAAT-C AAATC AAATC
99150735 TTCCTATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
5 28 0.88
6 4 0.12
ACGTcount: A:0.66, C:0.15, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATC
Found at i:99150712 original size:15 final size:15
Alignment explanation
Indices: 99150691--99150734 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
99150681 TAATTTAATC
*
99150691 ATAAAATAAAATCAA
1 ATAAAATCAAATCAA
*
99150706 ATCAAATCAAATCAA
1 ATAAAATCAAATCAA
99150721 ATAAAAATCAAATC
1 AT-AAAATCAAATC
99150735 TTCCTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 15 0.60
16 10 0.40
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (15 bp):
ATAAAATCAAATCAA
Found at i:99151319 original size:44 final size:44
Alignment explanation
Indices: 99151089--99151408 Score: 171
Period size: 44 Copynumber: 7.3 Consensus size: 44
99151079 ATTTGCTCTG
* * * * *
99151089 CTACTGCTTAGGGAGATATGATTTGTAATCTTCAGCTTACTCCG
1 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCA
* * * * *
99151133 CTGCTGCTCAGGGAGATAAGGT-T-TACTATCCTC-GATCTGCTCCA
1 CTACTGCTTAGGGAGATAAGATCTGTA--ATCTTCAG-CCTGCTCCA
**
99151177 CTACTGCTTAGGGAGATAAGATCTGTAAT-TTCCAGCCTATTTCC-
1 CTACTGCTTAGGGAGATAAGATCTGTAATCTT-CAGCCT-GCTCCA
* * * * * * *
99151221 CTACTACTTAGGGGGATAAG-GCT-CACGTCTCCGATCC-GCTCCA
1 CTACTGCTTAGGGAGATAAGATCTGTA-ATCTTC-AGCCTGCTCCA
99151264 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTACC-
1 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCT-CCA
* * * * * * *
99151308 CTACTACTTAGGGGGTTAAG-GCT-CACCGTCTTC-GATCTGCTCCA
1 CTACTGCTTAGGGAGATAAGATCTGTA--ATCTTCAG-CCTGCTCCA
* * * *
99151352 CTACTGCTTAGGGAGATAAGATCTGTAATTTTTAGCTTGTTACC-
1 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCT-CCA
99151396 CTACTGCTTAGGG
1 CTACTGCTTAGGG
99151409 GTTAAGGCTT
Statistics
Matches: 202, Mismatches: 50, Indels: 48
0.67 0.17 0.16
Matches are distributed among these distances:
42 7 0.03
43 33 0.16
44 146 0.72
45 13 0.06
46 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (44 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCA
Found at i:99151491 original size:40 final size:39
Alignment explanation
Indices: 99151431--99151659 Score: 108
Period size: 40 Copynumber: 5.5 Consensus size: 39
99151421 TGTCTTCAAT
*
99151431 CTGTT-CCACTACTATTTAGGGAAGATCTGTATTTTCCAG
1 CTGTTACC-CTACTACTTAGGGAAGATCTGTATTTTCCAG
* * *
99151470 CTTGTTACCCTACTACTTAGGGGGTTAAG-GCTTGCTATTTTCGAT
1 C-TGTTACCCTACTACTTA--GGG--AAGATC-TG-TATTTTCCAG
* ** *
99151515 CTGCTT-CACTACTGTTTAGGGGAGATCTGTATTTTCCAG
1 CTG-TTACCCTACTACTTAGGGAAGATCTGTATTTTCCAG
* * * * *
99151554 CCTGTTACCCTACTACTTATGGGGTTAAGGCTCAT-TGTCTTCGAT
1 -CTGTTACCCTACTACTTA--GGG--AA-GATC-TGTATTTTCCAG
* ** *
99151599 CTGCT-CCACTACTGTTTAGGGGAGATCTGTATTTTCCAG
1 CTGTTACC-CTACTACTTAGGGAAGATCTGTATTTTCCAG
99151638 CCTGTTACCCTACTACTTAGGG
1 -CTGTTACCCTACTACTTAGGG
99151660 GTTTAAGGCT
Statistics
Matches: 136, Mismatches: 32, Indels: 43
0.64 0.15 0.20
Matches are distributed among these distances:
38 1 0.01
39 20 0.15
40 45 0.33
41 5 0.04
42 12 0.09
43 3 0.02
44 29 0.21
45 20 0.15
46 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (39 bp):
CTGTTACCCTACTACTTAGGGAAGATCTGTATTTTCCAG
Done.