Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 297 of 362
Found at i:99747775 original size:57 final size:57
Alignment explanation
Indices: 99747704--99747818 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 57
99747694 GTGAGCAAGC
*
99747704 CCACTTCACAGCCGTGTGAGCATTACATATATGGTTACGGTTACAGATACAAGCACA
1 CCACTTCACAGCCGTGTGAGCATTACAGATATGGTTACGGTTACAGATACAAGCACA
* *
99747761 CCACTTCATAGCCGTGTGAGCATTATAGATATGGTTACGGTTACAGATACAAGCACA
1 CCACTTCACAGCCGTGTGAGCATTACAGATATGGTTACGGTTACAGATACAAGCACA
99747818 C
1 C
99747819 TTCGTGTAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.25
Consensus pattern (57 bp):
CCACTTCACAGCCGTGTGAGCATTACAGATATGGTTACGGTTACAGATACAAGCACA
Found at i:99748752 original size:35 final size:36
Alignment explanation
Indices: 99748700--99748779 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 36
99748690 GATATCAGTT
*
99748700 AGATACAG-TCTTAGGCCTAAGCCCATTACAAATTC
1 AGATACAGATCTTAGGCCTAAGCCCATTACAAATAC
* * * *
99748735 AGATACAGAT-TTGGGCCTTAGCCCATTTCAGATAC
1 AGATACAGATCTTAGGCCTAAGCCCATTACAAATAC
99748770 AGATACAGAT
1 AGATACAGAT
99748780 ATACAGTCAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 38 0.97
36 1 0.03
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (36 bp):
AGATACAGATCTTAGGCCTAAGCCCATTACAAATAC
Found at i:99749556 original size:27 final size:27
Alignment explanation
Indices: 99749522--99749577 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
99749512 CGATTTGGGT
99749522 ACACACCTGATATTGATTCGATGTGAA
1 ACACACCTGATATTGATTCGATGTGAA
99749549 ACACACCTGATATTGATTCGATGTGAA
1 ACACACCTGATATTGATTCGATGTGAA
99749576 AC
1 AC
99749578 CACTCCCAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (27 bp):
ACACACCTGATATTGATTCGATGTGAA
Found at i:99755009 original size:34 final size:34
Alignment explanation
Indices: 99754970--99755037 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
99754960 CTAAAGGTCC
99754970 CTATGAAATTCGGCTAGGCTGGGGTGTAATTAAA
1 CTATGAAATTCGGCTAGGCTGGGGTGTAATTAAA
99755004 CTATGAAATTCGGCTAGGCTGGGGTGTAATTAAA
1 CTATGAAATTCGGCTAGGCTGGGGTGTAATTAAA
99755038 GTTTGTGTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (34 bp):
CTATGAAATTCGGCTAGGCTGGGGTGTAATTAAA
Found at i:99761482 original size:13 final size:13
Alignment explanation
Indices: 99761464--99761490 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
99761454 TGCTCACCTA
99761464 AGTATAAAACATG
1 AGTATAAAACATG
99761477 AGTATAAAACATG
1 AGTATAAAACATG
99761490 A
1 A
99761491 AATTAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (13 bp):
AGTATAAAACATG
Found at i:99769813 original size:13 final size:13
Alignment explanation
Indices: 99769795--99769819 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99769785 TGCTCACCTA
99769795 AGTATAAAACATG
1 AGTATAAAACATG
99769808 AGTATAAAACAT
1 AGTATAAAACAT
99769820 AAAATTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (13 bp):
AGTATAAAACATG
Found at i:99772411 original size:21 final size:22
Alignment explanation
Indices: 99772379--99772420 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
99772369 TTAAAAAGAT
99772379 AAATAAAGATAA-AAGTAAAAA
1 AAATAAAGATAATAAGTAAAAA
*
99772400 AAATAATA-ATAATAATTAAAA
1 AAATAA-AGATAATAAGTAAAA
99772421 GTCTTCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (22 bp):
AAATAAAGATAATAAGTAAAAA
Found at i:99774970 original size:63 final size:63
Alignment explanation
Indices: 99774870--99775000 Score: 244
Period size: 63 Copynumber: 2.1 Consensus size: 63
99774860 CTCGACTTAC
*
99774870 ATCAATTTCGCATAGTCATGGTGGTTCAAGGAGTTGACACTTCTCATTCCTGCTATCAATCTT
1 ATCAATTTCGCATAGTCATGGTGGTTCAAAGAGTTGACACTTCTCATTCCTGCTATCAATCTT
*
99774933 TTCAATTTCGCATAGTCATGGTGGTTCAAAGAGTTGACACTTCTCATTCCTGCTATCAATCTT
1 ATCAATTTCGCATAGTCATGGTGGTTCAAAGAGTTGACACTTCTCATTCCTGCTATCAATCTT
99774996 ATCAA
1 ATCAA
99775001 AATAAGGTTT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (63 bp):
ATCAATTTCGCATAGTCATGGTGGTTCAAAGAGTTGACACTTCTCATTCCTGCTATCAATCTT
Found at i:99779286 original size:59 final size:59
Alignment explanation
Indices: 99779194--99779315 Score: 226
Period size: 59 Copynumber: 2.1 Consensus size: 59
99779184 ATTGATTAGT
* *
99779194 TAAAATGGTTGAATTATATGGTATGTTATGTCTATGTTTTGATGGGTTTTGGTTGCTTA
1 TAAAATGGTTGAATTATATGGTATGTTATGTCTATCTTTTAATGGGTTTTGGTTGCTTA
99779253 TAAAATGGTTGAATTATATGGTATGTTATGTCTATCTTTTAATGGGTTTTGGTTGCTTA
1 TAAAATGGTTGAATTATATGGTATGTTATGTCTATCTTTTAATGGGTTTTGGTTGCTTA
99779312 TAAA
1 TAAA
99779316 TGACTTGAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.25, C:0.04, G:0.23, T:0.48
Consensus pattern (59 bp):
TAAAATGGTTGAATTATATGGTATGTTATGTCTATCTTTTAATGGGTTTTGGTTGCTTA
Found at i:99781234 original size:30 final size:30
Alignment explanation
Indices: 99781198--99781254 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
99781188 ACAGCCATGA
*
99781198 CACACGGGCATGTGGTCTGCCCGTGTGCCT
1 CACACGGGCATGTGGTCTACCCGTGTGCCT
*
99781228 CACACGGGCATGTGGTCTACCTGTGTG
1 CACACGGGCATGTGGTCTACCCGTGTG
99781255 GAAGTGCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.12, C:0.30, G:0.33, T:0.25
Consensus pattern (30 bp):
CACACGGGCATGTGGTCTACCCGTGTGCCT
Found at i:99783036 original size:6 final size:6
Alignment explanation
Indices: 99783025--99783053 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
99783015 TAAATAAAGG
99783025 AAAATA AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAAT
99783054 GATAAAAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:99789497 original size:35 final size:35
Alignment explanation
Indices: 99789388--99789661 Score: 230
Period size: 35 Copynumber: 7.8 Consensus size: 35
99789378 TCGTATGGCC
* * *
99789388 GAATATATAAGTTCAATATATCATCACATGTAACCT
1 GAATATACAAGTTCAATATAACCTCACATGTAA-CT
* * * * ** * ** *
99789424 -AATGTTCAAGTTCAATAAAACATTTCATATGGCC
1 GAATATACAAGTTCAATATAACCTCACATGTAACT
* *
99789458 GAATATACAAATTCAATATAATCTCACATGTAACT
1 GAATATACAAGTTCAATATAACCTCACATGTAACT
* *
99789493 GAATATACAAGTTCAATATAAGCTCATATGTAA-T
1 GAATATACAAGTTCAATATAACCTCACATGTAACT
* * * * * *
99789527 CGATTACACAAGTTCAATATAACCTCAAATGCAGCC
1 -GAATATACAAGTTCAATATAACCTCACATGTAACT
* *
99789563 AAATATACAAGTTCAATATAAGCTCACATGTAA-T
1 GAATATACAAGTTCAATATAACCTCACATGTAACT
* * * *
99789597 CGAATACAAAAGTTCAATATAACCTCACATGCAGCT
1 -GAATATACAAGTTCAATATAACCTCACATGTAACT
*
99789633 GAATATATAAGTTCAATATAACCTCACAT
1 GAATATACAAGTTCAATATAACCTCACAT
99789662 ATACTTACCT
Statistics
Matches: 184, Mismatches: 49, Indels: 11
0.75 0.20 0.05
Matches are distributed among these distances:
34 2 0.01
35 181 0.98
36 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (35 bp):
GAATATACAAGTTCAATATAACCTCACATGTAACT
Found at i:99789505 original size:105 final size:103
Alignment explanation
Indices: 99789387--99789658 Score: 260
Period size: 105 Copynumber: 2.6 Consensus size: 103
99789377 TTCGTATGGC
* * * *** * *
99789387 CGAATATATAAGTTCAATATATCATCACATGTAACCTAATGTTCAAGTTCAATAAAACATTTCAT
1 CGAATATAAAAGTTCAATATAAC-TCACATGTAACCGAATACACAAGTTCAATAAAAC--CTCAA
* *
99789452 ATG-GCCGAATATACAAATTCAATATAATCTCACATGTAA-
63 ATGAGCCAAATATACAAATTCAATATAAGCTCACATGTAAT
* * * * *
99789491 CTGAATATACAAGTTCAATATAAGCTCATATGTAATCGATTACACAAGTTCAATATAACCTCAAA
1 C-GAATATAAAAGTTCAATATAA-CTCACATGTAACCGAATACACAAGTTCAATAAAACCTCAAA
*
99789556 TGCAGCCAAATATACAAGTTCAATATAAGCTCACATGTAAT
64 TG-AGCCAAATATACAAATTCAATATAAGCTCACATGTAAT
* * * * * * *
99789597 CGAATACAAAAGTTCAATATAACCTCACATGCAGCTGAATATATAAGTTCAATATAACCTCA
1 CGAATATAAAAGTTCAATATAA-CTCACATGTAACCGAATACACAAGTTCAATAAAACCTCA
99789659 CATATACTTA
Statistics
Matches: 137, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
103 6 0.04
104 1 0.01
105 128 0.93
106 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.29
Consensus pattern (103 bp):
CGAATATAAAAGTTCAATATAACTCACATGTAACCGAATACACAAGTTCAATAAAACCTCAAATG
AGCCAAATATACAAATTCAATATAAGCTCACATGTAAT
Found at i:99789543 original size:70 final size:70
Alignment explanation
Indices: 99789457--99789661 Score: 293
Period size: 70 Copynumber: 2.9 Consensus size: 70
99789447 TTCATATGGC
* * * * * *
99789457 CGAATATACAAATTCAATATAATCTCACATGTAACTGAATATACAAGTTCAATATAAGCTCATAT
1 CGAATACACAAGTTCAATATAACCTCACATGCAGCTGAATATACAAGTTCAATATAAGCTCACAT
99789522 GTAAT
66 GTAAT
* * **
99789527 CGATTACACAAGTTCAATATAACCTCAAATGCAGCCAAATATACAAGTTCAATATAAGCTCACAT
1 CGAATACACAAGTTCAATATAACCTCACATGCAGCTGAATATACAAGTTCAATATAAGCTCACAT
99789592 GTAAT
66 GTAAT
* * *
99789597 CGAATACAAAAGTTCAATATAACCTCACATGCAGCTGAATATATAAGTTCAATATAACCTCACAT
1 CGAATACACAAGTTCAATATAACCTCACATGCAGCTGAATATACAAGTTCAATATAAGCTCACAT
99789662 ATACTTACCT
Statistics
Matches: 118, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 118 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (70 bp):
CGAATACACAAGTTCAATATAACCTCACATGCAGCTGAATATACAAGTTCAATATAAGCTCACAT
GTAAT
Found at i:99796044 original size:23 final size:23
Alignment explanation
Indices: 99796017--99796068 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
99796007 TTCAAAACTT
99796017 TAAATCACATCAATTATTATAAC
1 TAAATCACATCAATTATTATAAC
99796040 TAAATCACATCAATTATTATAAC
1 TAAATCACATCAATTATTATAAC
99796063 TAAATC
1 TAAATC
99796069 CATTTGCGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAATCACATCAATTATTATAAC
Found at i:99797229 original size:35 final size:35
Alignment explanation
Indices: 99797165--99797473 Score: 138
Period size: 35 Copynumber: 8.8 Consensus size: 35
99797155 AAACTTACCT
* * * * *
99797165 ATATGGCCAAATACACAAGGTTCATTATATTATTTC
1 ATATGGCCGAATATACAA-GTTCAATATATCATCTC
*
99797201 ATATGGCCGAATATATAAGTTCAATATATCA--TC
1 ATATGGCCGAATATACAAGTTCAATATATCATCTC
* * * * * *
99797234 ACATGGAACCTAATGTTCAAGTTCAATAAAACATCTC
1 ATATGG--CCGAATATACAAGTTCAATATATCATCTC
*
99797271 ATATGGCCGAATATACAAATTCAATATA--ATCTC
1 ATATGGCCGAATATACAAGTTCAATATATCATCTC
* * *
99797304 ACATGTAACCGAATATACAAGTTCAATATA--AGCTGAC
1 ATATG--GCCGAATATACAAGTTCAATATATCATCT--C
* *** * *
99797341 ATGTAATCGAATACACAAGTTCAATATA--ACCTC
1 ATATGGCCGAATATACAAGTTCAATATATCATCTC
* *
99797374 ACATGCAGCCGAATATACAAGTTCAATATA--AGCTC
1 ATATG--GCCGAATATACAAGTTCAATATATCATCTC
* ** ** *
99797409 ACATGTAATCGAATCCACAAGTTCAATATA--ACCTC
1 ATATG--GCCGAATATACAAGTTCAATATATCATCTC
*
99797444 ACATGCAGCCGAATATACAAGTTCAATATA
1 ATATG--GCCGAATATACAAGTTCAATATA
99797474 ACCTCACATA
Statistics
Matches: 217, Mismatches: 46, Indels: 21
0.76 0.16 0.07
Matches are distributed among these distances:
33 19 0.09
35 173 0.80
36 15 0.07
37 10 0.05
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (35 bp):
ATATGGCCGAATATACAAGTTCAATATATCATCTC
Found at i:99797474 original size:35 final size:35
Alignment explanation
Indices: 99797207--99797482 Score: 309
Period size: 35 Copynumber: 7.9 Consensus size: 35
99797197 TTTCATATGG
* * * *
99797207 CCGAATATATAAGTTCAATATATCATCACATGGAA
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
* * * * * * * **
99797242 CCTAATGTTCAAGTTCAATAAAACATCTCATATGG
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
* *
99797277 CCGAATATACAAATTCAATATAATCTCACATGTAA
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
* *
99797312 CCGAATATACAAGTTCAATATAAGCTGACATGTAA
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
* * * *
99797347 TCGAATACACAAGTTCAATATAACCTCACATGCAG
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
*
99797382 CCGAATATACAAGTTCAATATAAGCTCACATGTAA
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
* ** * *
99797417 TCGAATCCACAAGTTCAATATAACCTCACATGCAG
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
99797452 CCGAATATACAAGTTCAATATAACCTCACAT
1 CCGAATATACAAGTTCAATATAACCTCACAT
99797483 ATACTTACCT
Statistics
Matches: 196, Mismatches: 45, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 196 1.00
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (35 bp):
CCGAATATACAAGTTCAATATAACCTCACATGTAA
Found at i:99802844 original size:12 final size:13
Alignment explanation
Indices: 99802827--99802864 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
99802817 ATCCTAAAAT
99802827 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
99802839 ATTAAGAACACATA
1 ATTAAGAACA-AGA
99802853 ATTAAGAACAAG
1 ATTAAGAACAAG
99802865 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:99803240 original size:13 final size:13
Alignment explanation
Indices: 99803222--99803274 Score: 88
Period size: 13 Copynumber: 4.1 Consensus size: 13
99803212 GCTTGACAGA
*
99803222 GACACGCCCGTGT
1 GACACGCCCATGT
*
99803235 GACACGCCCGTGT
1 GACACGCCCATGT
99803248 GACACGCCCATGT
1 GACACGCCCATGT
99803261 GACACGCCCATGT
1 GACACGCCCATGT
99803274 G
1 G
99803275 TGATTGCTCC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.19, C:0.38, G:0.28, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:99809226 original size:20 final size:20
Alignment explanation
Indices: 99809198--99809236 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
99809188 GTAATAATAA
* *
99809198 TAATAATAATATATATAATG
1 TAATAATAAAAAATATAATG
*
99809218 TAATCATAAAAAATATAAT
1 TAATAATAAAAAATATAAT
99809237 TGGCGATACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
TAATAATAAAAAATATAATG
Found at i:99809374 original size:11 final size:11
Alignment explanation
Indices: 99809274--99809375 Score: 59
Period size: 11 Copynumber: 8.8 Consensus size: 11
99809264 AAGAAAATAT
99809274 TATATAATAAA
1 TATATAATAAA
*
99809285 -ATGTAATATAAA
1 TATAT-A-ATAAA
*
99809297 TATATAAGAAA
1 TATATAATAAA
99809308 TATAATAGATATAA
1 TAT-ATA-ATA-AA
*
99809322 TATAAAATAACA
1 TATATAATAA-A
*
99809334 TGTA-AA-ACAA
1 TATATAATA-AA
99809344 TATATATATAAA
1 TATATA-ATAAA
99809356 TA-ATTAATAAA
1 TATA-TAATAAA
99809367 TATATAATA
1 TATATAATA
99809376 TATGTGAGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 26
0.68 0.07 0.25
Matches are distributed among these distances:
10 8 0.11
11 26 0.37
12 24 0.34
13 8 0.11
14 5 0.07
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (11 bp):
TATATAATAAA
Found at i:99809401 original size:35 final size:35
Alignment explanation
Indices: 99809364--99809433 Score: 90
Period size: 33 Copynumber: 2.0 Consensus size: 35
99809354 AATAATTAAT
99809364 AAATATATAATATATGTGAGAATATAATAATATATAA
1 AAATA-ATAATA-ATGTGAGAATATAATAATATATAA
* *
99809401 AAATAATAATAATTTGAGGA-A-AATAATATATAA
1 AAATAATAATAATGTGAGAATATAATAATATATAA
99809434 TAGTAATGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 12 0.39
34 1 0.03
35 7 0.23
36 6 0.19
37 5 0.16
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.33
Consensus pattern (35 bp):
AAATAATAATAATGTGAGAATATAATAATATATAA
Found at i:99809427 original size:36 final size:36
Alignment explanation
Indices: 99809364--99809432 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
99809354 AATAATTAAT
*
99809364 AAATATATAATATATGTGAGAATATAATAATATATAA
1 AAATATATAATATATGTGAGAAAATAAT-ATATATAA
*
99809401 AAATA-ATAATA-ATTTGAGGAAAATAATATATA
1 AAATATATAATATATGTGA-GAAAATAATATATA
99809433 ATAGTAATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 10 0.34
36 14 0.48
37 5 0.17
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (36 bp):
AAATATATAATATATGTGAGAAAATAATATATATAA
Found at i:99809520 original size:15 final size:16
Alignment explanation
Indices: 99809478--99809522 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
99809468 TGTATAAAAG
*
99809478 TAAAAATAAAT-CAAA
1 TAAAAATAAATAGAAA
*
99809493 TAAAAATATATAGAAA
1 TAAAAATAAATAGAAA
99809509 TAAAAA-AAATAGAA
1 TAAAAATAAATAGAA
99809523 CCAAATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 17 0.65
16 9 0.35
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.20
Consensus pattern (16 bp):
TAAAAATAAATAGAAA
Found at i:99811448 original size:83 final size:83
Alignment explanation
Indices: 99810931--99811431 Score: 921
Period size: 83 Copynumber: 6.0 Consensus size: 83
99810921 TTCGATTTGT
* * * *
99810931 AAGGATGTCAAATCATCTTAAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
99810996 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
99811014 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
99811079 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
99811097 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCTTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
99811162 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
99811180 AAGGATCCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
99811245 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
99811263 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
99811328 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
99811346 AAGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
99811411 TTTGTTCCTTGTAAACAC
66 TTTGTTCCTTGTAAGCAC
99811429 AAG
1 AAG
99811432 AATATCAAAT
Statistics
Matches: 408, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 408 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:99811733 original size:285 final size:285
Alignment explanation
Indices: 99811218--99811733 Score: 915
Period size: 285 Copynumber: 1.8 Consensus size: 285
99811208 TGAGAACATT
* *
99811218 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
*
99811283 AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAA
66 AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAAAA
99811348 GGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
131 GGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
* *
99811413 TGTTCCTTGTAAACACAAGAATATCAAATCATCTTGGATCTGCTTCAGTATAAACATCTAAAGGT
196 TGTTCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTCAGTATAAACATCTAAAGGT
99811478 TAGATATGCTATATTTGAAAACGTC
261 TAGATATGCTATATTTGAAAACGTC
*
99811503 TGAGAGTCATATCTGCAATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
1 TGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
* * *
99811568 AGTTTGTTTGAGAATATTTGAGAGTCATATCTGTAATGTCCTCGATTTGTTCCTTGTAAGCAAAA
66 AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAAAA
*
99811633 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
131 GGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
* * *
99811698 TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
196 TGTTCCTTGTAAACACAAGAATACCAAACCATCTTG
99811734 AGTCTGTTGG
Statistics
Matches: 218, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
285 218 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (285 bp):
TGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAAAA
GGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
TGTTCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTCAGTATAAACATCTAAAGGT
TAGATATGCTATATTTGAAAACGTC
Found at i:99811812 original size:368 final size:368
Alignment explanation
Indices: 99811135--99811935 Score: 1458
Period size: 368 Copynumber: 2.2 Consensus size: 368
99811125 TGAGAACATT
99811135 TGAGAGTCATATCTGCAATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
1 TGAGAGTCATATCTGCAATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
*
99811200 AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAA
66 AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAAAA
99811265 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
131 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
99811330 TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATA
196 TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATA
99811395 TCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATATCAAATCATCTTGGATCTGCTTCA
261 TCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATATCAAATCATCTTGGATCTGCTTCA
99811460 GTATAAACATCTAAAGGTTAGATATGCTATATTTGAAAACGTC
326 GTATAAACATCTAAAGGTTAGATATGCTATATTTGAAAACGTC
*
99811503 TGAGAGTCATATCTGCAATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
1 TGAGAGTCATATCTGCAATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
* * *
99811568 AGTTTGTTTGAGAATATTTGAGAGTCATATCTGTAATGTCCTCGATTTGTTCCTTGTAAGCAAAA
66 AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAAAA
99811633 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
131 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
99811698 TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATA
196 TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATA
99811763 TCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATATCAAATCATCTTGGATCTGCTTCA
261 TCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATATCAAATCATCTTGGATCTGCTTCA
* *
99811828 GTATAAACATCTGAAGGTTAGATATGCTATATTTGAGAACGTC
326 GTATAAACATCTAAAGGTTAGATATGCTATATTTGAAAACGTC
* ** * * * * * *
99811871 TGAGAGTCAAATCTGTTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCATATCTGCAATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
99811936 GATCTGCTTC
Statistics
Matches: 416, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
368 416 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (368 bp):
TGAGAGTCATATCTGCAATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAAAA
GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATA
TCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATATCAAATCATCTTGGATCTGCTTCA
GTATAAACATCTAAAGGTTAGATATGCTATATTTGAAAACGTC
Found at i:99811816 original size:83 final size:83
Alignment explanation
Indices: 99811503--99811799 Score: 513
Period size: 83 Copynumber: 3.6 Consensus size: 83
99811493 TGAAAACGTC
* * *
99811503 TGAGAGTCATATCTGCAATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTG
1 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
* *
99811568 AGTTTGTTTGAGAATATT
66 AGTCTGTTTGAGAACATT
* *
99811586 TGAGAGTCATATCTGTAATGTCCTCGATTTGTTCCTTGTAAGCAAAAGGATGCCAAACCATCTTG
1 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
99811651 AGTCTGTTTGAGAACATT
66 AGTCTGTTTGAGAACATT
99811669 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
*
99811734 AGTCTGTTGGAGAACATT
66 AGTCTGTTTGAGAACATT
*
99811752 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAG
1 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAG
99811800 AATATCAAAT
Statistics
Matches: 203, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 203 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (83 bp):
TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
AGTCTGTTTGAGAACATT
Found at i:99811960 original size:119 final size:119
Alignment explanation
Indices: 99811743--99811974 Score: 356
Period size: 119 Copynumber: 1.9 Consensus size: 119
99811733 GAGTCTGTTG
* * *
99811743 GAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATATCAA
1 GAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
*
99811808 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATATGCTATATTT
66 ATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTTAGATATGCTATATTT
* ** *
99811862 GAGAACGTCTGAGAGTCAAATCTGTTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAA
1 GAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
** * *
99811927 ATCATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTTTAGATCTGCT
66 ATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTTAGATATGCT
99811975 GTCTTCAATT
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
119 101 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (119 bp):
GAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
ATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTTAGATATGCTATATTT
Found at i:99822254 original size:47 final size:47
Alignment explanation
Indices: 99822176--99822568 Score: 651
Period size: 47 Copynumber: 8.3 Consensus size: 47
99822166 CCCTTCGGGA
* * * * * *
99822176 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
99822223 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99822270 CTTATCACATATATACACTTTCACATTCATCACATAGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99822317 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99822366 CTTATCACATATATACACTTTCACATTCATCACATAGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
99822413 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99822460 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99822507 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
99822554 CTTATCACATATATA
1 CTTATCACATATATA
99822569 TATACACTTT
Statistics
Matches: 325, Mismatches: 19, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
47 280 0.86
49 45 0.14
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:99822502 original size:190 final size:188
Alignment explanation
Indices: 99822176--99822568 Score: 660
Period size: 190 Copynumber: 2.1 Consensus size: 188
99822166 CCCTTCGGGA
* * * * *
99822176 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATAGGCCACTAGGCCCTATCACATATATACAC
*
99822241 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATA
* *
99822306 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGAC
* * *
99822366 CTTATCACATATATACACTTTCACATTCATCACATAGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATAGGCCACTAGGCCCTATCACATATATACAC
*
99822431 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATA
99822496 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
99822554 CTTATCACATATATA
1 CTTATCACATATATA
99822569 TATACACTTT
Statistics
Matches: 191, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
188 52 0.27
190 139 0.73
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATCCATCACATAGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATA
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
Found at i:99824095 original size:13 final size:13
Alignment explanation
Indices: 99824077--99824101 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99824067 TACTAAATTT
99824077 TCATGGATTCAAA
1 TCATGGATTCAAA
99824090 TCATGGATTCAA
1 TCATGGATTCAA
99824102 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:99827898 original size:75 final size:74
Alignment explanation
Indices: 99827819--99827964 Score: 165
Period size: 75 Copynumber: 1.9 Consensus size: 74
99827809 ATACATAACA
* *
99827819 TAAAAGAAAATAT-TATATAATAA-AATGTAATATA-AATATATAAGA-AATATAATAGATATAA
1 TAAAACAAAATATATATA-AATAATAAT-AAATATATAATATATAAGAGAATATAATA-ATAT-A
99827880 TATAAAATAACATG
62 TA-AAAATAACATG
* **
99827894 TAAAACAATATATATATAAATAATTAATAAATATATAATATATGTGAGAATATAATAATATATAA
1 TAAAACAAAATATATATAAATAA-TAATAAATATATAATATATAAGAGAATATAATAATATATAA
99827959 AAATAA
65 AAATAA
99827965 TAATAATTTG
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
75 23 0.38
76 13 0.21
77 16 0.26
78 9 0.15
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.32
Consensus pattern (74 bp):
TAAAACAAAATATATATAAATAATAATAAATATATAATATATAAGAGAATATAATAATATATAAA
AATAACATG
Found at i:99827932 original size:11 final size:11
Alignment explanation
Indices: 99827832--99827933 Score: 59
Period size: 11 Copynumber: 8.8 Consensus size: 11
99827822 AAGAAAATAT
99827832 TATATAATAAA
1 TATATAATAAA
*
99827843 -ATGTAATATAAA
1 TATAT-A-ATAAA
*
99827855 TATATAAGAAA
1 TATATAATAAA
99827866 TATAATAGATATAA
1 TAT-ATA-ATA-AA
*
99827880 TATAAAATAACA
1 TATATAATAA-A
*
99827892 TGTA-AA-ACAA
1 TATATAATA-AA
99827902 TATATATATAAA
1 TATATA-ATAAA
99827914 TA-ATTAATAAA
1 TATA-TAATAAA
99827925 TATATAATA
1 TATATAATA
99827934 TATGTGAGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 26
0.68 0.07 0.25
Matches are distributed among these distances:
10 8 0.11
11 26 0.37
12 24 0.34
13 8 0.11
14 5 0.07
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (11 bp):
TATATAATAAA
Found at i:99828077 original size:15 final size:16
Alignment explanation
Indices: 99828035--99828079 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
99828025 TGTATAAAAG
*
99828035 TAAAAATAAAT-CAAA
1 TAAAAATAAATAGAAA
*
99828050 TAAAAATATATAGAAA
1 TAAAAATAAATAGAAA
99828066 TAAAAA-AAATAGAA
1 TAAAAATAAATAGAA
99828080 CCAAATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 17 0.65
16 9 0.35
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.20
Consensus pattern (16 bp):
TAAAAATAAATAGAAA
Found at i:99835068 original size:13 final size:13
Alignment explanation
Indices: 99835050--99835076 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
99835040 GCTCGACAGA
99835050 GACACGCCCGTGT
1 GACACGCCCGTGT
99835063 GACACGCCCGTGT
1 GACACGCCCGTGT
99835076 G
1 G
99835077 CAATTGCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:99837525 original size:25 final size:25
Alignment explanation
Indices: 99837473--99837585 Score: 106
Period size: 25 Copynumber: 4.6 Consensus size: 25
99837463 ATACATGTAT
*
99837473 GCTCATACGAGCAGTAA-A-CGGTAA
1 GCTCATACGAGCTG-AATATCGGTAA
*
99837497 GCTCATCCGAGCTGAATATCGGTAA
1 GCTCATACGAGCTGAATATCGGTAA
*
99837522 GCTCATACGAGCT-ACAAATCGGTAA
1 GCTCATACGAGCTGA-ATATCGGTAA
* * * * *
99837547 GCTCCTCCAAGCTAAATATCAGTAA
1 GCTCATACGAGCTGAATATCGGTAA
*
99837572 GCTCTTACGAGCTG
1 GCTCATACGAGCTG
99837586 TAGTGAGTTC
Statistics
Matches: 72, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
23 2 0.03
24 14 0.19
25 55 0.76
26 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (25 bp):
GCTCATACGAGCTGAATATCGGTAA
Found at i:99837565 original size:50 final size:50
Alignment explanation
Indices: 99837473--99837584 Score: 147
Period size: 50 Copynumber: 2.3 Consensus size: 50
99837463 ATACATGTAT
* * * *
99837473 GCTCATACGAGC-AGTAAACGGTAAGCTCATCCGAGCTGAATATCGGTAA
1 GCTCATACGAGCTAGCAAACGGTAAGCTCATCCAAGCTAAATATCAGTAA
*
99837522 GCTCATACGAGCTA-CAAATCGGTAAGCTCCTCCAAGCTAAATATCAGTAA
1 GCTCATACGAGCTAGCAAA-CGGTAAGCTCATCCAAGCTAAATATCAGTAA
*
99837572 GCTCTTACGAGCT
1 GCTCATACGAGCT
99837585 GTAGTGAGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
49 15 0.27
50 40 0.73
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (50 bp):
GCTCATACGAGCTAGCAAACGGTAAGCTCATCCAAGCTAAATATCAGTAA
Found at i:99840518 original size:18 final size:18
Alignment explanation
Indices: 99840492--99840541 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 18
99840482 GATCGTAAAG
*
99840492 CTGCAAGCTCACTCAAGA
1 CTGCGAGCTCACTCAAGA
* *
99840510 CTGCGAGCTCTC-CAATA
1 CTGCGAGCTCACTCAAGA
*
99840527 GTGCGAGCTCA-TCAA
1 CTGCGAGCTCACTCAA
99840542 AGCTGCAAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 16 0.62
18 10 0.38
ACGTcount: A:0.28, C:0.32, G:0.20, T:0.20
Consensus pattern (18 bp):
CTGCGAGCTCACTCAAGA
Found at i:99841439 original size:18 final size:20
Alignment explanation
Indices: 99841418--99841458 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
99841408 TATTTTGATA
99841418 TTTTAATAA-AT-TTAAAAT
1 TTTTAATAATATATTAAAAT
*
99841436 TTTTAATAATGTATTAAAAT
1 TTTTAATAATATATTAAAAT
99841456 TTT
1 TTT
99841459 CACCAATGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 1 0.05
20 10 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
TTTTAATAATATATTAAAAT
Found at i:99846199 original size:31 final size:31
Alignment explanation
Indices: 99846161--99846222 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
99846151 ATTTTAGGAG
99846161 ATTGATCACTGATAACAAATATTCGCGTTGC
1 ATTGATCACTGATAACAAATATTCGCGTTGC
99846192 ATTGATCACTGATAACAAATATTCGCGTTGC
1 ATTGATCACTGATAACAAATATTCGCGTTGC
99846223 CGACAGTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (31 bp):
ATTGATCACTGATAACAAATATTCGCGTTGC
Found at i:99852313 original size:108 final size:108
Alignment explanation
Indices: 99852123--99852333 Score: 316
Period size: 108 Copynumber: 1.9 Consensus size: 108
99852113 TGCCGAAATG
* *
99852123 AGAAAGGTGCGTATTGGCCAATTATTTCTAACCTTCCTCGTGTGAGGATAAATTATGTTGACATC
1 AGAAAGCTGCATATTGGCCAATTATTTCTAACCTTCCTC-TGTGAGGATAAATTATGTTGACATC
*
99852188 CTCTGAACAAGAACAAGCAGATTGCATTTCTAGATGGATAGCAA
65 CTCTGAACAAGAACAAGCAGATTGCATTCCTAGATGGATAGCAA
* * *
99852232 AGAAAGCTGCATATTGGCCTATTATTTCTCACCTTCACT-TGTGAGGATAAGTTATGTTGACATC
1 AGAAAGCTGCATATTGGCCAATTATTTCTAACCTTC-CTCTGTGAGGATAAATTATGTTGACATC
* * *
99852296 TTCTGAACAAGCACAAGCGGATTGCATTCCTAGATGGA
65 CTCTGAACAAGAACAAGCAGATTGCATTCCTAGATGGA
99852334 CAGCGAAAAC
Statistics
Matches: 92, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
108 58 0.63
109 32 0.35
110 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (108 bp):
AGAAAGCTGCATATTGGCCAATTATTTCTAACCTTCCTCTGTGAGGATAAATTATGTTGACATCC
TCTGAACAAGAACAAGCAGATTGCATTCCTAGATGGATAGCAA
Found at i:99855110 original size:21 final size:21
Alignment explanation
Indices: 99855085--99855143 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
99855075 GCAGTATACT
99855085 ACACATAAAGTGCCTGAAACG
1 ACACATAAAGTGCCTGAAACG
* * * *
99855106 ACACATGAGGTGCCTAAAACT
1 ACACATAAAGTGCCTGAAACG
*
99855127 ACACAAAAAGTGCCTGA
1 ACACATAAAGTGCCTGA
99855144 TCGGTAATGC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.42, C:0.24, G:0.19, T:0.15
Consensus pattern (21 bp):
ACACATAAAGTGCCTGAAACG
Found at i:99861718 original size:16 final size:16
Alignment explanation
Indices: 99861699--99861742 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
99861689 CAGAAGTCTT
99861699 CAAAAAATAAATAAAA
1 CAAAAAATAAATAAAA
99861715 C-AAAAATAAAATAAAA
1 CAAAAAAT-AAATAAAA
*
99861731 TAAAAAATAAAT
1 CAAAAAATAAAT
99861743 GGACTCAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 6 0.24
16 13 0.52
17 6 0.24
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.16
Consensus pattern (16 bp):
CAAAAAATAAATAAAA
Found at i:99861721 original size:11 final size:10
Alignment explanation
Indices: 99861700--99861742 Score: 50
Period size: 11 Copynumber: 4.0 Consensus size: 10
99861690 AGAAGTCTTC
99861700 AAAAAATAAAT
1 AAAAAA-AAAT
99861711 AAAACAAAAAT
1 AAAA-AAAAAT
*
99861722 AAAATAAAAT
1 AAAAAAAAAT
99861732 AAAAAATAAAT
1 AAAAAA-AAAT
99861743 GGACTCAGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 10 0.36
11 16 0.57
12 2 0.07
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:99866520 original size:27 final size:27
Alignment explanation
Indices: 99866490--99866667 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
99866480 ATATTGAGTC
* * * *
99866490 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
99866517 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
99866544 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
99866572 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
99866599 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
99866626 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
99866653 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
99866668 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:99866629 original size:82 final size:81
Alignment explanation
Indices: 99866511--99866666 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
99866501 TGCTATATAA
* *
99866511 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
99866576 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
99866593 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
99866657 CACTTAGTGC
65 CACTTAGTGC
99866667 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:99868130 original size:11 final size:11
Alignment explanation
Indices: 99868114--99868138 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
99868104 CCTCACTAGG
99868114 CCAACATGTTC
1 CCAACATGTTC
99868125 CCAACATGTTC
1 CCAACATGTTC
99868136 CCA
1 CCA
99868139 CCCATAGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.40, G:0.08, T:0.24
Consensus pattern (11 bp):
CCAACATGTTC
Found at i:99875733 original size:28 final size:28
Alignment explanation
Indices: 99875691--99875746 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
99875681 TCATATTTCA
99875691 TATTTCATAACACTGGGCCGAAGCCTTT
1 TATTTCATAACACTGGGCCGAAGCCTTT
**
99875719 TATTTCATATTACTGGGCCGAAGCCTTT
1 TATTTCATAACACTGGGCCGAAGCCTTT
99875747 ACTGTAAACG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (28 bp):
TATTTCATAACACTGGGCCGAAGCCTTT
Found at i:99875990 original size:23 final size:24
Alignment explanation
Indices: 99875940--99876078 Score: 209
Period size: 23 Copynumber: 6.0 Consensus size: 24
99875930 GCTTTATCAT
*
99875940 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTA
99875964 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
99875987 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
99876009 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
99876033 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
99876056 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
99876079 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 1, Indels: 12
0.89 0.01 0.10
Matches are distributed among these distances:
22 20 0.19
23 54 0.50
24 34 0.31
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:99876059 original size:47 final size:47
Alignment explanation
Indices: 99875940--99876078 Score: 221
Period size: 47 Copynumber: 3.0 Consensus size: 47
99875930 GCTTTATCAT
* *
99875940 ATAACTGGAGGCCT-AGCCTCTTTTATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTAATAACTGGGGCATAAGCCCTTTTA
99875987 ATAACT-GGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTA
99876033 ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
99876079 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
45 20 0.23
46 22 0.25
47 45 0.52
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:99876170 original size:20 final size:20
Alignment explanation
Indices: 99876127--99876192 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
99876117 TTTATGATAC
99876127 ATCATGTGCATATCA-ACAT
1 ATCATGTGCATATCATACAT
99876146 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
99876166 GTCATGAGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
99876186 ACCATGT
1 ATCATGT
99876193 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
19 15 0.37
20 26 0.63
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:99879490 original size:25 final size:25
Alignment explanation
Indices: 99879462--99879509 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
99879452 ACTCTCTCTC
99879462 GAGCCATATAACAGGAAGCTTATAT
1 GAGCCATATAACAGGAAGCTTATAT
* *
99879487 GAGCCATGTAATAGGAAGCTTAT
1 GAGCCATATAACAGGAAGCTTAT
99879510 CTGGTTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.25
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTTATAT
Found at i:99881382 original size:27 final size:27
Alignment explanation
Indices: 99881344--99881397 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
99881334 CAACCTCCAA
99881344 GAATCTTCCTCTTCTAGTGAGTTACCC
1 GAATCTTCCTCTTCTAGTGAGTTACCC
* *
99881371 GAATCTTCCTCTTTTGGTGAGTTACCC
1 GAATCTTCCTCTTCTAGTGAGTTACCC
99881398 CTAATGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.39
Consensus pattern (27 bp):
GAATCTTCCTCTTCTAGTGAGTTACCC
Found at i:99914256 original size:53 final size:53
Alignment explanation
Indices: 99914175--99914325 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
99914165 CTTACACGGT
* *
99914175 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
99914230 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
99914283 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
99914326 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:99921767 original size:53 final size:53
Alignment explanation
Indices: 99921686--99921836 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
99921676 CTTACACGGT
* *
99921686 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
99921741 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
99921794 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
99921837 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:99924888 original size:50 final size:50
Alignment explanation
Indices: 99924776--99924959 Score: 255
Period size: 50 Copynumber: 3.7 Consensus size: 50
99924766 CTAGAACGCA
* *
99924776 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGGTACACG
** *
99924825 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGGTACACG
* * * *
99924875 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-TTATCTGGTACACG
99924926 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
99924960 CACAATAGAT
Statistics
Matches: 118, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
49 32 0.27
50 46 0.39
51 39 0.33
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGGTACACG
Found at i:99924949 original size:101 final size:99
Alignment explanation
Indices: 99924776--99924959 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 99
99924766 CTAGAACGCA
* * *
99924776 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
99924841 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* ** *
99924875 TAGTAGCCTGCACTTAGTACTACACACGTGATTGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
99924940 TAGTACTACACACGTGACCT
64 TAGTACTACACACGTGACCT
99924960 CACAATAGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
99 29 0.38
100 2 0.03
101 45 0.59
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:99925123 original size:13 final size:13
Alignment explanation
Indices: 99925102--99925136 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
99925092 GCCACATTTC
*
99925102 ATATGATAATAAA
1 ATATAATAATAAA
99925115 ATATAATAATAAA
1 ATATAATAATAAA
99925128 ATATAATAA
1 ATATAATAA
99925137 AATAAAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (13 bp):
ATATAATAATAAA
Found at i:99927174 original size:30 final size:24
Alignment explanation
Indices: 99927105--99927154 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
99927095 ATAAAATTTC
99927105 AATTCAAAATAAACAAGGAAAAAT
1 AATTCAAAATAAACAAGGAAAAAT
99927129 AATTCAAAATAAACAAGGAAAAAT
1 AATTCAAAATAAACAAGGAAAAAT
99927153 AA
1 AA
99927155 ATCATCTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (24 bp):
AATTCAAAATAAACAAGGAAAAAT
Found at i:99928378 original size:30 final size:30
Alignment explanation
Indices: 99928342--99928404 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
99928332 ATTTATTTTA
99928342 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
99928372 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
99928402 TTG
1 TTG
99928405 ATTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:99929330 original size:11 final size:10
Alignment explanation
Indices: 99929310--99929353 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
99929300 AATAAATATG
*
99929310 AAATTAATAA
1 AAATTTATAA
99929320 AAATGTTATAA
1 AAAT-TTATAA
*
99929331 AAATTCATAA
1 AAATTTATAA
*
99929341 AAACTTATAA
1 AAATTTATAA
99929351 AAA
1 AAA
99929354 GAGTCATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 20 0.69
11 9 0.31
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (10 bp):
AAATTTATAA
Found at i:99929340 original size:21 final size:20
Alignment explanation
Indices: 99929310--99929353 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
99929300 AATAAATATG
*
99929310 AAATTAATAAAAATGTTATAA
1 AAATTAATAAAAA-CTTATAA
*
99929331 AAATTCATAAAAACTTATAA
1 AAATTAATAAAAACTTATAA
99929351 AAA
1 AAA
99929354 GAGTCATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATTAATAAAAACTTATAA
Found at i:99937903 original size:30 final size:32
Alignment explanation
Indices: 99937838--99937905 Score: 97
Period size: 31 Copynumber: 2.2 Consensus size: 32
99937828 ATGTTAATAG
*
99937838 GTGACTGATTTTGTCATTTTTTGATAATGTTA
1 GTGACTGATTTTGTCATTTTTCGATAATGTTA
99937870 GTGACTGA-TTTGTCATTTTTCGA-AA-GTTGA
1 GTGACTGATTTTGTCATTTTTCGATAATGTT-A
99937900 GTGACT
1 GTGACT
99937906 AAATTGAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
29 3 0.09
30 9 0.26
31 14 0.41
32 8 0.24
ACGTcount: A:0.22, C:0.09, G:0.22, T:0.47
Consensus pattern (32 bp):
GTGACTGATTTTGTCATTTTTCGATAATGTTA
Found at i:99938003 original size:20 final size:20
Alignment explanation
Indices: 99937974--99938063 Score: 65
Period size: 20 Copynumber: 4.5 Consensus size: 20
99937964 TAATTTACTC
*
99937974 AAAAATTTATTAAAAATTAT
1 AAAAAATTATTAAAAATTAT
* * *
99937994 AAAACATTATTTAAAATTTGT
1 AAAAAATTA-TTAAAAATTAT
*
99938015 AAAAAATTGTTAAAAA-TAGT
1 AAAAAATTATTAAAAATTA-T
* * * *
99938035 AAATAGTTGTTAAAAATTGT
1 AAAAAATTATTAAAAATTAT
*
99938055 AAATAATTA
1 AAAAAATTA
99938064 ACAAATTAAA
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
19 1 0.02
20 36 0.67
21 17 0.31
ACGTcount: A:0.54, C:0.01, G:0.07, T:0.38
Consensus pattern (20 bp):
AAAAAATTATTAAAAATTAT
Found at i:99939982 original size:27 final size:24
Alignment explanation
Indices: 99939942--99940004 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
99939932 GTAAATGACT
*
99939942 TATGACATATTTTAACCTAGTATAAAAA
1 TATGA-ATATTTTAA-ATA-TAT-AAAA
99939970 TATGAATATTTTAAATATATAAAA
1 TATGAATATTTTAAATATATAAAA
*
99939994 TATGAGTATTT
1 TATGAATATTT
99940005 GTTTAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 14 0.42
25 3 0.09
26 2 0.06
27 9 0.27
28 5 0.15
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (24 bp):
TATGAATATTTTAAATATATAAAA
Found at i:99940289 original size:21 final size:20
Alignment explanation
Indices: 99940244--99940290 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
99940234 AAATAATAAT
*
99940244 GTAAATATAAATTTATAAATA
1 GTAAA-ATAAATTTATAAAGA
*
99940265 -TAAAATAAATTTAATTAAGA
1 GTAAAATAAATTT-ATAAAGA
99940285 GTAAAA
1 GTAAAA
99940291 AATCTCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 8 0.36
20 9 0.41
21 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (20 bp):
GTAAAATAAATTTATAAAGA
Found at i:99952058 original size:26 final size:26
Alignment explanation
Indices: 99952014--99952123 Score: 152
Period size: 26 Copynumber: 4.3 Consensus size: 26
99952004 AACTTTCTTG
*
99952014 AAATTTTATCAGGGCTAAAATCGTCA
1 AAATTTTATCAGGGGTAAAATCGTCA
**
99952040 AAATTTTATTGGGGGTAAAAT-GATCA
1 AAATTTTATCAGGGGTAAAATCG-TCA
*
99952066 AAATTTTATCAGGGTTAAAATCGTCA
1 AAATTTTATCAGGGGTAAAATCGTCA
*
99952092 AAATTTTATC-GGGGTAAAATCATCA
1 AAATTTTATCAGGGGTAAAATCGTCA
99952117 AAATTTT
1 AAATTTT
99952124 TACTAGAGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
25 21 0.28
26 52 0.70
27 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (26 bp):
AAATTTTATCAGGGGTAAAATCGTCA
Found at i:99952125 original size:52 final size:52
Alignment explanation
Indices: 99952014--99952123 Score: 186
Period size: 52 Copynumber: 2.1 Consensus size: 52
99952004 AACTTTCTTG
* *
99952014 AAATTTTATCAGGGCTAAAATCGTCAAAATTTTATTGGGGGTAAAATGATCA
1 AAATTTTATCAGGGCTAAAATCGTCAAAATTTTATTCGGGGTAAAATCATCA
*
99952066 AAATTTTATCAGGGTTAAAATCGTCAAAATTTTA-TCGGGGTAAAATCATCA
1 AAATTTTATCAGGGCTAAAATCGTCAAAATTTTATTCGGGGTAAAATCATCA
99952117 AAATTTT
1 AAATTTT
99952124 TACTAGAGTA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 22 0.40
52 33 0.60
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (52 bp):
AAATTTTATCAGGGCTAAAATCGTCAAAATTTTATTCGGGGTAAAATCATCA
Found at i:99953384 original size:36 final size:39
Alignment explanation
Indices: 99953337--99953430 Score: 97
Period size: 41 Copynumber: 2.4 Consensus size: 39
99953327 ACTTAATCAC
* *
99953337 TTTAATGTTAAATTAA-TATAAA-A-AT-ATTAGATTAAA
1 TTTAATATTAAATTAATTA-AAATAGATCATTAAATTAAA
*
99953373 TTTAATATTAAATCTTATTAAAATAGTATCATTAAATTAAA
1 TTTAATATTAAAT-TAATTAAAATAG-ATCATTAAATTAAA
*
99953414 TTTAATATTAAAATAAT
1 TTTAATATTAAATTAAT
99953431 CGCTTTAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
36 12 0.26
37 5 0.11
38 3 0.06
40 5 0.11
41 22 0.47
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (39 bp):
TTTAATATTAAATTAATTAAAATAGATCATTAAATTAAA
Found at i:99953450 original size:31 final size:31
Alignment explanation
Indices: 99953373--99953451 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 31
99953363 TTAGATTAAA
* *
99953373 TTTAATATTAAATCT--TATTAAAATAGTATC
1 TTTAATATTAAAT-TAATATTAAAATAATAGC
* *
99953403 ATTAA-ATTAAATTTAATATTAAAATAATCGC
1 TTTAATATTAAA-TTAATATTAAAATAATAGC
99953434 TTTAATATTAAATTAATA
1 TTTAATATTAAATTAATA
99953452 AAATACTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
29 7 0.17
30 5 0.12
31 22 0.55
32 6 0.15
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (31 bp):
TTTAATATTAAATTAATATTAAAATAATAGC
Found at i:99955139 original size:16 final size:16
Alignment explanation
Indices: 99955118--99955148 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
99955108 CTATGCATGC
*
99955118 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
99955134 AAAATACAAAAGACA
1 AAAATACAAAAGACA
99955149 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:99957771 original size:63 final size:64
Alignment explanation
Indices: 99957691--99957873 Score: 185
Period size: 63 Copynumber: 2.8 Consensus size: 64
99957681 AGACATTATG
* *
99957691 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-CAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
99957754 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
99957819 AA
63 AA
* * * *
99957821 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
99957874 CGAACTATAT
Statistics
Matches: 97, Mismatches: 17, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 39 0.40
64 5 0.05
65 6 0.06
66 26 0.27
67 18 0.19
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:99957851 original size:66 final size:65
Alignment explanation
Indices: 99957724--99957851 Score: 168
Period size: 66 Copynumber: 1.9 Consensus size: 65
99957714 TACTATGTGT
* * * *
99957724 ACACCATGTAGCAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAG
1 ACACCATGTAGCAAGAGAGCTACGAGATAAATG-AGCTAGGTCACATGCGTGGTACCAAGTGAAG
99957789 G
65 G
* *
99957790 ACACCATGTAGACAAGAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAG-CAAGAGAGCTACGAGATAAA-TGAGCTAGGTCACATGCGTGGTACCAAGTG
99957852 TTCACCATGT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
66 34 0.63
67 18 0.33
68 2 0.04
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.20
Consensus pattern (65 bp):
ACACCATGTAGCAAGAGAGCTACGAGATAAATGAGCTAGGTCACATGCGTGGTACCAAGTGAAGG
Found at i:99965958 original size:15 final size:17
Alignment explanation
Indices: 99965914--99965960 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 17
99965904 AAAAATAATT
99965914 TATTATAACTTATTATTAA
1 TATTATAA--TATTATTAA
*
99965933 TATTTTAATATT-TTAA
1 TATTATAATATTATTAA
99965949 TA-TATAATATTA
1 TATTATAATATTA
99965961 ATTTTAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 8 0.32
16 6 0.24
17 4 0.16
19 7 0.28
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTATAATATTATTAA
Found at i:99966667 original size:11 final size:11
Alignment explanation
Indices: 99966653--99966702 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
99966643 TATTTTCTCC
99966653 CTATTTTACTA
1 CTATTTTACTA
99966664 CTATTTTACTA
1 CTATTTTACTA
* * *
99966675 TTATGTTGCTA
1 CTATTTTACTA
**
99966686 CTATTTTGTTA
1 CTATTTTACTA
99966697 CTATTT
1 CTATTT
99966703 GAATATTGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.22, C:0.14, G:0.06, T:0.58
Consensus pattern (11 bp):
CTATTTTACTA
Found at i:99966761 original size:30 final size:30
Alignment explanation
Indices: 99966727--99966789 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
99966717 ACTTATTTTA
99966727 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* * *
99966757 TTGTTAGTTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
99966787 TTG
1 TTG
99966790 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:99967312 original size:21 final size:21
Alignment explanation
Indices: 99967288--99967330 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
99967278 TTTTTTATTT
99967288 AATTAAT-TTTTATGATGTAAA
1 AATTAATATTTTAT-ATGTAAA
*
99967309 AATTAATATTTTATATTTAAA
1 AATTAATATTTTATATGTAAA
99967330 A
1 A
99967331 TGGTGGAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (21 bp):
AATTAATATTTTATATGTAAA
Found at i:99968949 original size:6 final size:6
Alignment explanation
Indices: 99968940--99968964 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
99968930 TTTGTTGCAA
99968940 TTTATT TTTATT TTTATT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT T
99968965 ACTAAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:99969536 original size:40 final size:40
Alignment explanation
Indices: 99969492--99969575 Score: 141
Period size: 40 Copynumber: 2.1 Consensus size: 40
99969482 ATAGTGGCCT
* *
99969492 TTTTTGAAAAACGCCGCTAAAGATCGAGCATTCGCGGCGC
1 TTTTTGAAAAACACCGCTAAAGATCGAGCATTAGCGGCGC
*
99969532 TTTTTGAAAAACACCGCTAAAGATCGAGCATTAGCTGCGC
1 TTTTTGAAAAACACCGCTAAAGATCGAGCATTAGCGGCGC
99969572 TTTT
1 TTTT
99969576 CAGAAAATGC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (40 bp):
TTTTTGAAAAACACCGCTAAAGATCGAGCATTAGCGGCGC
Found at i:99969657 original size:40 final size:40
Alignment explanation
Indices: 99969631--99969722 Score: 157
Period size: 40 Copynumber: 2.3 Consensus size: 40
99969621 CTCTTTTTGA
99969631 AAAACGCCGTAATAGATCGAGAATTAGCGGCGCTTTTCAG
1 AAAACGCCGTAATAGATCGAGAATTAGCGGCGCTTTTCAG
* * *
99969671 AAAACGCCGCAATAGATCGAGCAGTAGCGGCGCTTTTCAG
1 AAAACGCCGTAATAGATCGAGAATTAGCGGCGCTTTTCAG
99969711 AAAACGCCGTAA
1 AAAACGCCGTAA
99969723 AAAAGTTGAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (40 bp):
AAAACGCCGTAATAGATCGAGAATTAGCGGCGCTTTTCAG
Found at i:99969661 original size:132 final size:132
Alignment explanation
Indices: 99969483--99969729 Score: 349
Period size: 132 Copynumber: 1.9 Consensus size: 132
99969473 GATAGAGCTA
* * *
99969483 TAGTGGCCTTTTTTGAAAAACGCCGCTAAAGATCGAGCATTCGCGGCGCTTTT-TGAAAAACACC
1 TAGTGGCCTTTTTTGAAAAACGCCGCTAAAGATCGAGAATTAGCGGCGCTTTTCAG-AAAACACC
* * *
99969547 GCTAA-AGATCGAGCATTAGCTGCGCTTTTCAGAAAATGCCACAAAAAAGTTTAGCAAAACAACG
65 GC-AATAGATCGAGCAGTAGCGGCGCTTTTCAGAAAACGCCACAAAAAAGTTTAGCAAAACAACG
99969611 GCAT
129 GCAT
*
99969615 TAGTGG-CTCTTTTTGAAAAACGCCG-TAATAGATCGAGAATTAGCGGCGCTTTTCAGAAAACGC
1 TAGTGGCCT-TTTTTGAAAAACGCCGCTAA-AGATCGAGAATTAGCGGCGCTTTTCAGAAAACAC
**
99969678 CGCAATAGATCGAGCAGTAGCGGCGCTTTTCAGAAAACGCCGTAAAAAAGTT
64 CGCAATAGATCGAGCAGTAGCGGCGCTTTTCAGAAAACGCCACAAAAAAGTT
99969730 GACTAAAACG
Statistics
Matches: 102, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
131 7 0.07
132 94 0.92
133 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.23
Consensus pattern (132 bp):
TAGTGGCCTTTTTTGAAAAACGCCGCTAAAGATCGAGAATTAGCGGCGCTTTTCAGAAAACACCG
CAATAGATCGAGCAGTAGCGGCGCTTTTCAGAAAACGCCACAAAAAAGTTTAGCAAAACAACGGC
AT
Found at i:99969823 original size:14 final size:14
Alignment explanation
Indices: 99969804--99969835 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
99969794 AAAAAATTAT
*
99969804 TTTATGATTTAGGG
1 TTTATGATTTAAGG
99969818 TTTATGATTTAAGG
1 TTTATGATTTAAGG
99969832 TTTA
1 TTTA
99969836 ATGTCTATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (14 bp):
TTTATGATTTAAGG
Found at i:99969906 original size:14 final size:14
Alignment explanation
Indices: 99969889--99969932 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
99969879 TATTTTGTGA
99969889 TTAGAGTTT-TGAGT
1 TTAGAGTTTATG-GT
*
99969903 TTAGGGTTTATGGT
1 TTAGAGTTTATGGT
*
99969917 TTAAAGTTTATGGT
1 TTAGAGTTTATGGT
99969931 TT
1 TT
99969933 GGGGTTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 24 0.92
15 2 0.08
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.52
Consensus pattern (14 bp):
TTAGAGTTTATGGT
Found at i:99969938 original size:21 final size:21
Alignment explanation
Indices: 99969900--99969940 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
99969890 TAGAGTTTTG
*
99969900 AGTTTAGGGTTTATGGTTTAA
1 AGTTTAGGGTTTAGGGTTTAA
* *
99969921 AGTTTATGGTTTGGGGTTTA
1 AGTTTAGGGTTTAGGGTTTA
99969941 TTATTTTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.49
Consensus pattern (21 bp):
AGTTTAGGGTTTAGGGTTTAA
Found at i:99969939 original size:14 final size:14
Alignment explanation
Indices: 99969901--99969941 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
99969891 AGAGTTTTGA
99969901 GTTTAGGGTTTATG
1 GTTTAGGGTTTATG
**
99969915 GTTTAAAGTTTATG
1 GTTTAGGGTTTATG
*
99969929 GTTTGGGGTTTAT
1 GTTTAGGGTTTAT
99969942 TATTTTATAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:99970172 original size:21 final size:21
Alignment explanation
Indices: 99970126--99970172 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
99970116 TTAGGGTGTA
99970126 GGTTTATGGACTAGGATTTAG
1 GGTTTATGGACTAGGATTTAG
* * *
99970147 AGTTTATGGTCTAGGATTTGG
1 GGTTTATGGACTAGGATTTAG
99970168 GGTTT
1 GGTTT
99970173 GGGGTTTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.04, G:0.34, T:0.43
Consensus pattern (21 bp):
GGTTTATGGACTAGGATTTAG
Found at i:99971561 original size:23 final size:22
Alignment explanation
Indices: 99971515--99971571 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
99971505 ATATACACAC
99971515 ACAT-ATATATATTAAAAAAAT
1 ACATAATATATATTAAAAAAAT
*
99971536 ACATAATA-ATATTAAAAATATGT
1 ACATAATATATATTAAAAA-A-AT
*
99971559 ACATACTATATAT
1 ACATAATATATAT
99971572 ATACATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
21 14 0.47
22 4 0.13
23 8 0.27
24 4 0.13
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (22 bp):
ACATAATATATATTAAAAAAAT
Found at i:99971602 original size:26 final size:26
Alignment explanation
Indices: 99971572--99971629 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
99971562 TACTATATAT
*
99971572 ATACATATAATATAGT-TATTAAGAAA
1 ATACATACAATATA-TATATTAAGAAA
*
99971598 ATACATACAATATATAATATTAAGAAT
1 ATACATACAATATAT-ATATTAAGAAA
99971625 ATACA
1 ATACA
99971630 CAATACATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 1 0.04
26 13 0.46
27 14 0.50
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (26 bp):
ATACATACAATATATATATTAAGAAA
Found at i:99971628 original size:27 final size:26
Alignment explanation
Indices: 99971570--99971629 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
99971560 CATACTATAT
*
99971570 ATATACATATAATATAGTTATTAAGA
1 ATATACATACAATATAGTTATTAAGA
*
99971596 AAATACATACAATATA-TAATATTAAGA
1 ATATACATACAATATAGT--TATTAAGA
99971623 ATATACA
1 ATATACA
99971630 CAATACATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 14 0.48
27 14 0.48
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (26 bp):
ATATACATACAATATAGTTATTAAGA
Found at i:99983900 original size:3 final size:3
Alignment explanation
Indices: 99983892--99983917 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
99983882 TGAAAGCAAG
99983892 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
99983918 AACCAATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:99984368 original size:26 final size:26
Alignment explanation
Indices: 99984339--99984396 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
99984329 TACTATATAT
*
99984339 ATACATATAATATAGT-TATTAAGAAA
1 ATACATACAATATA-TATATTAAGAAA
*
99984365 ATACATACAATATATAATATTAAGAAT
1 ATACATACAATATAT-ATATTAAGAAA
99984392 ATACA
1 ATACA
99984397 CAATACATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 1 0.04
26 13 0.46
27 14 0.50
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (26 bp):
ATACATACAATATATATATTAAGAAA
Found at i:99984395 original size:27 final size:26
Alignment explanation
Indices: 99984337--99984396 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
99984327 CATACTATAT
*
99984337 ATATACATATAATATAGTTATTAAGA
1 ATATACATACAATATAGTTATTAAGA
*
99984363 AAATACATACAATATA-TAATATTAAGA
1 ATATACATACAATATAGT--TATTAAGA
99984390 ATATACA
1 ATATACA
99984397 CAATACATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 14 0.48
27 14 0.48
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (26 bp):
ATATACATACAATATAGTTATTAAGA
Found at i:99984698 original size:29 final size:30
Alignment explanation
Indices: 99984654--99984723 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 30
99984644 TACTATGTAC
*
99984654 AAAAATATATACATA-AT---ATGGTA-TT
1 AAAAATATATACATATATAACATAGTATTT
99984679 AAAAATATATACATATATAACATAGTATTT
1 AAAAATATATACATATATAACATAGTATTT
* *
99984709 AAGAATGTATACATA
1 AAAAATATATACATA
99984724 AGATGATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
25 15 0.41
26 2 0.05
29 5 0.14
30 15 0.41
ACGTcount: A:0.53, C:0.06, G:0.07, T:0.34
Consensus pattern (30 bp):
AAAAATATATACATATATAACATAGTATTT
Found at i:99984799 original size:11 final size:10
Alignment explanation
Indices: 99984782--99984820 Score: 55
Period size: 9 Copynumber: 4.0 Consensus size: 10
99984772 ATGACATTAA
99984782 AAATATATAC
1 AAATATATAC
99984792 ATAATATATA-
1 A-AATATATAC
99984802 AAATATATAC
1 AAATATATAC
99984812 -AATATATAC
1 AAATATATAC
99984821 CTATATTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 17 0.63
10 2 0.07
11 8 0.30
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (10 bp):
AAATATATAC
Found at i:99984819 original size:20 final size:20
Alignment explanation
Indices: 99984682--99984812 Score: 68
Period size: 23 Copynumber: 6.0 Consensus size: 20
99984672 TGGTATTAAA
*
99984682 AATATAT-ACATATATAACAT
1 AATATATAAAATATAT-ACAT
* * *
99984702 AGTATTTAAGAATGTATACAT
1 AATATATAA-AATATATACAT
*
99984723 AAGATGATATAAAATACATACAT
1 -A-AT-ATATAAAATATATACAT
99984746 GGAATAGTATAAGAAATATATA-ACT
1 --AATA-TAT-A-AAATATATACA-T
*
99984771 AATGACATTAAAAATATATACAT
1 AAT-ATA-T-AAAATATATACAT
99984794 AATATATAAAATATATACA
1 AATATATAAAATATATACA
99984813 ATATATACCT
Statistics
Matches: 86, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
20 17 0.20
21 6 0.07
22 9 0.10
23 32 0.37
24 13 0.15
25 9 0.10
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.31
Consensus pattern (20 bp):
AATATATAAAATATATACAT
Found at i:99985084 original size:12 final size:12
Alignment explanation
Indices: 99985025--99985081 Score: 78
Period size: 13 Copynumber: 4.5 Consensus size: 12
99985015 AGATATATAT
*
99985025 ATAATAACACATA
1 ATAATAATA-ATA
99985038 ATAATAATAATA
1 ATAATAATAATA
99985050 ATAATAATAATA
1 ATAATAATAATA
99985062 ATAAATAATAAATA
1 AT-AATAAT-AATA
99985076 ATAATA
1 ATAATA
99985082 TAAAAAAAGG
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
12 17 0.41
13 18 0.44
14 6 0.15
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (12 bp):
ATAATAATAATA
Found at i:99985102 original size:3 final size:3
Alignment explanation
Indices: 99985025--99985081 Score: 78
Period size: 3 Copynumber: 18.0 Consensus size: 3
99985015 AGATATATAT
*
99985025 ATA ATA ACA CATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATAA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA AT-A
99985073 ATA ATA ATA
1 ATA ATA ATA
99985082 TAAAAAAAGG
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
3 41 0.84
4 8 0.16
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:99986783 original size:8 final size:8
Alignment explanation
Indices: 99986772--99986826 Score: 71
Period size: 8 Copynumber: 7.2 Consensus size: 8
99986762 AAAATCTTCA
99986772 AAAAAATT
1 AAAAAATT
99986780 -AAAAATT
1 AAAAAATT
99986787 -AAAAATT
1 AAAAAATT
99986794 -AAAAATT
1 AAAAAATT
99986801 AAAAAATT
1 AAAAAATT
*
99986809 AAAAACTT
1 AAAAAATT
*
99986817 AAAAATTT
1 AAAAAATT
99986825 AA
1 AA
99986827 TATTTAATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
7 21 0.48
8 23 0.52
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (8 bp):
AAAAAATT
Found at i:99986785 original size:7 final size:7
Alignment explanation
Indices: 99986773--99986823 Score: 84
Period size: 7 Copynumber: 7.0 Consensus size: 7
99986763 AAATCTTCAA
99986773 AAAAATT
1 AAAAATT
99986780 AAAAATT
1 AAAAATT
99986787 AAAAATT
1 AAAAATT
99986794 AAAAATT
1 AAAAATT
99986801 AAAAAATT
1 -AAAAATT
99986809 AAAAACTT
1 AAAAA-TT
99986817 AAAAATT
1 AAAAATT
99986824 TAATATTTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
7 28 0.67
8 14 0.33
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:99986792 original size:14 final size:14
Alignment explanation
Indices: 99986773--99986823 Score: 84
Period size: 15 Copynumber: 3.5 Consensus size: 14
99986763 AAATCTTCAA
99986773 AAAAATTAAAAATT
1 AAAAATTAAAAATT
99986787 AAAAATTAAAAATT
1 AAAAATTAAAAATT
99986801 AAAAAATTAAAAACTT
1 -AAAAATTAAAAA-TT
99986817 AAAAATT
1 AAAAATT
99986824 TAATATTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
14 14 0.40
15 19 0.54
16 2 0.06
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAAATTAAAAATT
Found at i:99986833 original size:15 final size:15
Alignment explanation
Indices: 99986773--99986833 Score: 79
Period size: 15 Copynumber: 4.1 Consensus size: 15
99986763 AAATCTTCAA
99986773 AAAAATTAAAAA-TT
1 AAAAATTAAAAATTT
*
99986787 AAAAATTAAAAATTA
1 AAAAATTAAAAATTT
*
99986802 AAAAATTAAAAACTT
1 AAAAATTAAAAATTT
* *
99986817 AAAAATTTAATATTT
1 AAAAATTAAAAATTT
99986832 AA
1 AA
99986834 TATTTTAGTC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
14 12 0.30
15 28 0.70
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAATTAAAAATTT
Found at i:99987154 original size:17 final size:17
Alignment explanation
Indices: 99987132--99987164 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
99987122 AAAATTTAGC
99987132 TACTCTTTTTCTCTCGT
1 TACTCTTTTTCTCTCGT
99987149 TACTCTTTTTCTCTCG
1 TACTCTTTTTCTCTCG
99987165 ATCCTTCGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.30, G:0.06, T:0.58
Consensus pattern (17 bp):
TACTCTTTTTCTCTCGT
Found at i:99989997 original size:16 final size:15
Alignment explanation
Indices: 99989967--99990005 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
99989957 CTTGAATAGC
*
99989967 AAATTTTATTATATT
1 AAATTTTTTTATATT
*
99989982 ACATTTTTTTAGTATT
1 AAATTTTTTTA-TATT
99989998 AAATTTTT
1 AAATTTTT
99990006 CATAAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (15 bp):
AAATTTTTTTATATT
Found at i:99992696 original size:15 final size:15
Alignment explanation
Indices: 99992673--99992704 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
99992663 TGCATTTTTT
99992673 GCGGCGTTTGTAAAA
1 GCGGCGTTTGTAAAA
*
99992688 GCGGTGTTTGTAAAA
1 GCGGCGTTTGTAAAA
99992703 GC
1 GC
99992705 ACCGCAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.34, T:0.28
Consensus pattern (15 bp):
GCGGCGTTTGTAAAA
Found at i:99995541 original size:116 final size:116
Alignment explanation
Indices: 99995401--99995628 Score: 404
Period size: 116 Copynumber: 2.0 Consensus size: 116
99995391 CGACATGGCT
* *
99995401 GTGTTACCTACACGGCCTGGACACACGAGCATGTCCTA-GGCTGTGTGAAAATTGGAGCTAAATT
1 GTGTTACCTACACGGCCTGAACACACGAGCATGTCCTAGGGC-GTGTGAAAACTGGAGCTAAATT
*
99995465 TTCAAATTTTAAACAAGTTAGAGATTTACACGGGCGAGGCACACGGCCGTGC
65 TTCAAATTTTAAACAAGTTAGAGATCTACACGGGCGAGGCACACGGCCGTGC
99995517 GTGTTACCTACACGGCCTGAACACACGAGCATGTCCTAGGGCGTGTGAAAACTGGAGCTAAATTT
1 GTGTTACCTACACGGCCTGAACACACGAGCATGTCCTAGGGCGTGTGAAAACTGGAGCTAAATTT
*
99995582 TTAAATTTTAAACAAGTTAGAGATCTACACGGGCGAGGCACACGGCC
66 TCAAATTTTAAACAAGTTAGAGATCTACACGGGCGAGGCACACGGCC
99995629 ATGTGTTTGG
Statistics
Matches: 107, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
116 104 0.97
117 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (116 bp):
GTGTTACCTACACGGCCTGAACACACGAGCATGTCCTAGGGCGTGTGAAAACTGGAGCTAAATTT
TCAAATTTTAAACAAGTTAGAGATCTACACGGGCGAGGCACACGGCCGTGC
Found at i:99996279 original size:22 final size:22
Alignment explanation
Indices: 99996239--99996303 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
99996229 CTTATTTCTA
*
99996239 TTATTACTCTTAGTA-TATTATT
1 TTATT-CTCTTATTATTATTATT
99996261 TTATTCTCTTATTATTATTATT
1 TTATTCTCTTATTATTATTATT
*
99996283 GT-TT-TCTTATTTCATTATTAT
1 TTATTCTCTTA-TT-ATTATTAT
99996304 GAGTTTCTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.13
21 12 0.32
22 21 0.55
ACGTcount: A:0.23, C:0.09, G:0.03, T:0.65
Consensus pattern (22 bp):
TTATTCTCTTATTATTATTATT
Found at i:99997942 original size:6 final size:6
Alignment explanation
Indices: 99997928--99998003 Score: 73
Period size: 6 Copynumber: 12.7 Consensus size: 6
99997918 TTGAGTCCGA
* ** *
99997928 TTATTT TTATGT TTATGA TTATTT TTATTT TTATCTT GTA-TT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTAT-TT TTATTT TTATTT
* * *
99997976 TTATTT TGAGTT TTATTT TTCTTT TTAT
1 TTATTT TTATTT TTATTT TTATTT TTAT
99998004 GTCTATTTTG
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
5 4 0.07
6 48 0.86
7 4 0.07
ACGTcount: A:0.17, C:0.03, G:0.07, T:0.74
Consensus pattern (6 bp):
TTATTT
Found at i:100002789 original size:23 final size:24
Alignment explanation
Indices: 100002739--100002789 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
100002729 TAAGAAATAT
* *
100002739 AAAAAGAAAAATTTTAGTTATAAT
1 AAAAAGAAAAATTTTAGTTAGAAG
100002763 AAAAAGAAAAGA-TTTA-TTAGAAG
1 AAAAAGAAAA-ATTTTAGTTAGAAG
100002786 AAAA
1 AAAA
100002790 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 9 0.38
24 14 0.58
25 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.25
Consensus pattern (24 bp):
AAAAAGAAAAATTTTAGTTAGAAG
Found at i:100008189 original size:52 final size:48
Alignment explanation
Indices: 100008127--100008319 Score: 187
Period size: 47 Copynumber: 4.0 Consensus size: 48
100008117 GAAATGTGAT
* *
100008127 TTCCGTATAAGACCATAGCTGGGCTATGGCTTCGAAGAAATGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCG-AG---TGTGATATGTGC
* * *
100008179 TTCCGTATAAGACCATATCCGGGATATGGCATCG-GTGTGATATGTTC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * *
100008226 TACTGTATAAGACCATATCTGGGATATGGCATC-AGTGTGATATGTG-
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * * * *
100008272 ATCCGTGTAAGACCATGGCTGGGCTATGGCCTCG-GTATGTGATATGTG
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAG--TGTGATATGTG
100008320 ACTATGTGCA
Statistics
Matches: 120, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
46 26 0.22
47 52 0.43
48 11 0.09
50 1 0.01
52 30 0.25
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (48 bp):
TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
Found at i:100009899 original size:23 final size:23
Alignment explanation
Indices: 100009817--100009903 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
100009807 CCTGATCAGT
*
100009817 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
100009839 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
100009859 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
100009882 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
100009904 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:100011999 original size:5 final size:5
Alignment explanation
Indices: 100011989--100012024 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
100011979 TTATGTTTTA
100011989 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
100012025 AACCTAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:100013294 original size:15 final size:15
Alignment explanation
Indices: 100013274--100013330 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
100013264 CGATGAATTT
100013274 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
100013289 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
100013304 ATTGAATTTATATTG
1 ATTGAATTTATATTG
100013319 ATTGAA-TTATAT
1 ATTGAATTTATAT
100013331 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:100013732 original size:23 final size:23
Alignment explanation
Indices: 100013702--100013788 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
100013692 GCTTTATCGA
* *
100013702 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
100013725 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
100013746 TCAGGCACCTCGTGTGTC--ATT
1 TCAGGCACCTCATGTGTCGTATT
* * *
100013767 TTAGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
100013789 ATGATCAGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
19 1 0.02
21 32 0.60
23 20 0.38
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:100013749 original size:21 final size:22
Alignment explanation
Indices: 100013714--100013763 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
100013704 AGGCACTTTA
100013714 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA-TTCAGGCACCTCG
100013737 TGTGTCGTA-TCAGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
100013758 TGTGTC
1 TGTGTC
100013764 ATTTTAGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 18 0.67
23 9 0.33
ACGTcount: A:0.12, C:0.26, G:0.28, T:0.34
Consensus pattern (22 bp):
TGTGTCGTATTCAGGCACCTCG
Found at i:100015638 original size:28 final size:28
Alignment explanation
Indices: 100015607--100015660 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
100015597 AAACAAAAAA
* *
100015607 AAGAAAGCTACGTGGGAAAATGACATTC
1 AAGAAAGCAACGTGGGAAAACGACATTC
**
100015635 AAGAAAGCAATTTGGGAAAACGACAT
1 AAGAAAGCAACGTGGGAAAACGACAT
100015661 CCAAATGCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.24, T:0.17
Consensus pattern (28 bp):
AAGAAAGCAACGTGGGAAAACGACATTC
Found at i:100017298 original size:26 final size:24
Alignment explanation
Indices: 100017259--100017315 Score: 87
Period size: 26 Copynumber: 2.3 Consensus size: 24
100017249 AGACAAAGGA
100017259 TTTTTTTTTCACAAAAAAGCATATAC
1 TTTTTTTTTCACAAAAAAGC--ATAC
*
100017285 TTTTTTTTTTACAAAAAAGCATAC
1 TTTTTTTTTCACAAAAAAGCATAC
100017309 TTTTTTT
1 TTTTTTT
100017316 GTTGATACCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 11 0.37
26 19 0.63
ACGTcount: A:0.33, C:0.12, G:0.04, T:0.51
Consensus pattern (24 bp):
TTTTTTTTTCACAAAAAAGCATAC
Found at i:100017839 original size:31 final size:31
Alignment explanation
Indices: 100017801--100017865 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
100017791 TTAAGGGCCC
*
100017801 AAATTTTTTT-TACCAACTTTTAAGGGATCTA
1 AAATTTTTTTCT-CCAACTTTTAAGGAATCTA
100017832 AAATTTTTTTCTCCAACTTTTAAGGAATCTA
1 AAATTTTTTTCTCCAACTTTTAAGGAATCTA
100017863 AAA
1 AAA
100017866 CCCCATTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (31 bp):
AAATTTTTTTCTCCAACTTTTAAGGAATCTA
Found at i:100019843 original size:19 final size:20
Alignment explanation
Indices: 100019815--100019867 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
100019805 TTTGCTTAAT
100019815 TAAT-TTTTAATAATTATTA
1 TAATATTTTAATAATTATTA
* *
100019834 TAA-ATTTTAATATTTTTTA
1 TAATATTTTAATAATTATTA
100019853 TAATATTTT-ATAATT
1 TAATATTTTAATAATT
100019868 CTAAAATGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 24 0.83
20 5 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TAATATTTTAATAATTATTA
Found at i:100035525 original size:42 final size:43
Alignment explanation
Indices: 100035464--100035572 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 43
100035454 GACTTGATAT
*
100035464 TTACATGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGT-AGCATCGATATTTGA
* * * * *
100035506 TTTCGTGTAAGACCTTGTCTAGGACAGTAGCGTCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGTAGCATCGATATTTGA
*
100035549 TTACATGTAAGACCAAGTCTGGGA
1 TTACATGTAAGACCATGTCTGGGA
100035573 TGTTGGCATT
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
42 27 0.50
43 27 0.50
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACAGTAGCATCGATATTTGA
Done.