Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 30 of 362
Found at i:8736762 original size:21 final size:20
Alignment explanation
Indices: 8736732--8736771 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
8736722 AAAATCAAAT
8736732 AAAAATAAAATGAA-TTAAAA
1 AAAAATAAAAT-AAGTTAAAA
8736752 AAAAATCAAAATAAGTTAAA
1 AAAAAT-AAAATAAGTTAAA
8736772 TAACCTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (20 bp):
AAAAATAAAATAAGTTAAAA
Found at i:8742627 original size:23 final size:23
Alignment explanation
Indices: 8742545--8742631 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
8742535 CCTGATCAGT
*
8742545 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
8742567 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
8742587 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
8742610 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
8742632 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:8743025 original size:15 final size:15
Alignment explanation
Indices: 8743000--8743057 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
8742990 TCATATATAT
8743000 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
8743016 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
8743031 AATAATTTCAATCAA
1 TATAAATTCAATCAA
8743046 TATAAATTCAAT
1 TATAAATTCAAT
8743058 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:8744339 original size:5 final size:5
Alignment explanation
Indices: 8744326--8744374 Score: 82
Period size: 5 Copynumber: 9.8 Consensus size: 5
8744316 TTCTTTAGTT
8744326 TATATA TATAA TATAA TATAA TATAA TAT-A TATAA TATAA TATAA TATA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
8744375 TAATTAAAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.10
5 34 0.81
6 4 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:8744355 original size:24 final size:24
Alignment explanation
Indices: 8744327--8744374 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
8744317 TCTTTAGTTT
8744327 ATATATATAATATAATATAATATA
1 ATATATATAATATAATATAATATA
8744351 ATATATATAATATAATATAATATA
1 ATATATATAATATAATATAATATA
8744375 TAATTAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
ATATATATAATATAATATAATATA
Found at i:8744358 original size:19 final size:19
Alignment explanation
Indices: 8744326--8744376 Score: 84
Period size: 19 Copynumber: 2.6 Consensus size: 19
8744316 TTCTTTAGTT
8744326 TATATATATAATATAATATAA
1 TATA-ATAT-ATATAATATAA
8744347 TATAATATATATAATATAA
1 TATAATATATATAATATAA
8744366 TATAATATATA
1 TATAATATATA
8744377 ATTAAAACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 22 0.73
20 4 0.13
21 4 0.13
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TATAATATATATAATATAA
Found at i:8744789 original size:30 final size:30
Alignment explanation
Indices: 8744755--8744814 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
8744745 CTTTTTATTT
8744755 CAACATGAGATTATGTTGATTTTCGTGTTG
1 CAACATGAGATTATGTTGATTTTCGTGTTG
8744785 CAACATGAGATTATGTTGATTTTCGTGTTG
1 CAACATGAGATTATGTTGATTTTCGTGTTG
8744815 TACACATCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.43
Consensus pattern (30 bp):
CAACATGAGATTATGTTGATTTTCGTGTTG
Found at i:8747353 original size:29 final size:29
Alignment explanation
Indices: 8747301--8747357 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
8747291 TTGAACGAGA
*
8747301 TGAAAAAGAAGAAAAAGAATGTATGGAGT
1 TGAAAAAGAAGAAAAAGAAGGTATGGAGT
* * *
8747330 TGAACAAGAAGAAGAATAAGGTATGGAG
1 TGAAAAAGAAGAAAAAGAAGGTATGGAG
8747358 CCGATCGCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.30, T:0.16
Consensus pattern (29 bp):
TGAAAAAGAAGAAAAAGAAGGTATGGAGT
Found at i:8748669 original size:18 final size:18
Alignment explanation
Indices: 8748646--8748688 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
8748636 GTTCAAGGTG
8748646 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTGTT
8748664 TAATTAATTAAAATTGTT
1 TAATTAATTAAAATTGTT
8748682 TAATTAA
1 TAATTAA
8748689 AAAACCTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TAATTAATTAAAATTGTT
Found at i:8749367 original size:16 final size:18
Alignment explanation
Indices: 8749328--8749369 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
8749318 TAAGTTTTTA
8749328 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
8749345 ATTTTTATATATTATG-T
1 ATATTTATATATTATGTT
8749362 A-ATTTATA
1 ATATTTATA
8749370 ACACATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:8750539 original size:10 final size:10
Alignment explanation
Indices: 8750508--8750541 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
8750498 AAACAATTCC
8750508 ACTCGAATCG
1 ACTCGAATCG
*
8750518 AATCGAATCG
1 ACTCGAATCG
*
8750528 ACTCGACTCG
1 ACTCGAATCG
8750538 ACTC
1 ACTC
8750542 AACTCAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (10 bp):
ACTCGAATCG
Found at i:8756156 original size:51 final size:50
Alignment explanation
Indices: 8756080--8756184 Score: 165
Period size: 51 Copynumber: 2.1 Consensus size: 50
8756070 GTAGCTGCAA
*
8756080 ATCATTTGTTTAGATTAAGTGTCCATGTGTTGTATGTATCAAGATAGGGT
1 ATCATTTGTTTAGATTAAGTGTCCATGTGTTGTACGTATCAAGATAGGGT
* * *
8756130 ATCATTTGTTTATATTTAAGTGTCCATTTGTTGTACGTATGAAGATAGGGT
1 ATCATTTGTTTAGA-TTAAGTGTCCATGTGTTGTACGTATCAAGATAGGGT
8756181 ATCA
1 ATCA
8756185 GAACCAGCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 13 0.26
51 37 0.74
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.43
Consensus pattern (50 bp):
ATCATTTGTTTAGATTAAGTGTCCATGTGTTGTACGTATCAAGATAGGGT
Found at i:8759349 original size:14 final size:14
Alignment explanation
Indices: 8759330--8759383 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
8759320 TTAGATCAAT
8759330 TAAAATTATATATA
1 TAAAATTATATATA
* *
8759344 TAAAATTACATAAAA
1 TAAAATTATAT-ATA
8759359 TTAAAATT-TATTATA
1 -TAAAATTATA-TATA
8759374 TAAAATTATA
1 TAAAATTATA
8759384 CATTAAATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
14 17 0.53
15 7 0.22
16 8 0.25
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (14 bp):
TAAAATTATATATA
Found at i:8760128 original size:31 final size:31
Alignment explanation
Indices: 8760093--8760164 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
8760083 AATACTTAAC
8760093 AGTTCAGTGACTTAAATAAAAACTTTCAAAT
1 AGTTCAGTGACTTAAATAAAAACTTTCAAAT
* **
8760124 AGTTCAGTGACTTAAATGAAAACTTTTGAAT
1 AGTTCAGTGACTTAAATAAAAACTTTCAAAT
*
8760155 AGTTTAGTGA
1 AGTTCAGTGA
8760165 TCATTTTGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (31 bp):
AGTTCAGTGACTTAAATAAAAACTTTCAAAT
Found at i:8760348 original size:14 final size:14
Alignment explanation
Indices: 8760313--8760350 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
8760303 TGTTTCACTA
*
8760313 AAAATGACTTCTGG
1 AAAATGATTTCTGG
8760327 AAAATGATTTCTGG
1 AAAATGATTTCTGG
8760341 AAAATGATTT
1 AAAATGATTT
8760351 ATTTTTCTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.34
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:8762676 original size:103 final size:102
Alignment explanation
Indices: 8762550--8762754 Score: 365
Period size: 103 Copynumber: 2.0 Consensus size: 102
8762540 CTCTTGACTT
* *
8762550 GGAAATGTGACTTGACAACAAAATAAAATTTGAGCATGAAACCTTAATTTTGTGGTTGGTTTGAT
1 GGAAATGTGACTTGACAACAAAATAAAATTTGAGCATGAAACCTTAATTTTGTAGTTGATTTGAT
8762615 GAATATTGAAGGTTGGTCATCTTGAAACATATATAAA
66 GAATATTGAAGGTTGGTCATCTTGAAACATATATAAA
* *
8762652 GGAAATGTGAACTTGACAACAAAATGAAATTTTAGCATGAAACCTTAATTTTGTAGTTGATTTGA
1 GGAAATGTG-ACTTGACAACAAAATAAAATTTGAGCATGAAACCTTAATTTTGTAGTTGATTTGA
8762717 TGAATATTGAAGGTTGGTCATCTTGAAACATATATAAA
65 TGAATATTGAAGGTTGGTCATCTTGAAACATATATAAA
8762755 ATTAAATGAT
Statistics
Matches: 98, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
102 9 0.09
103 89 0.91
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.34
Consensus pattern (102 bp):
GGAAATGTGACTTGACAACAAAATAAAATTTGAGCATGAAACCTTAATTTTGTAGTTGATTTGAT
GAATATTGAAGGTTGGTCATCTTGAAACATATATAAA
Found at i:8764079 original size:7 final size:8
Alignment explanation
Indices: 8764059--8764132 Score: 53
Period size: 8 Copynumber: 9.0 Consensus size: 8
8764049 ATAACATTGA
8764059 ATTTTTAT
1 ATTTTTAT
8764067 ATTTTTAT
1 ATTTTTAT
* *
8764075 ATTTTAAAAAA
1 ATTTT---TAT
8764086 ATATTTT-T
1 AT-TTTTAT
*
8764094 ATTTTTAA
1 ATTTTTAT
*
8764102 ATTTTAAT
1 ATTTTTAT
8764110 ATTTTTAT
1 ATTTTTAT
*
8764118 -TTTTCAT
1 ATTTTTAT
8764125 ATTTTTAT
1 ATTTTTAT
8764133 TTATTTTAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
7 10 0.20
8 34 0.68
11 3 0.06
12 3 0.06
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.66
Consensus pattern (8 bp):
ATTTTTAT
Found at i:8764121 original size:15 final size:15
Alignment explanation
Indices: 8764093--8764134 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
8764083 AAAATATTTT
*
8764093 TATTTTTAAATTTTAA
1 TATTTTT-ATTTTTAA
*
8764109 TATTTTTATTTTTCA
1 TATTTTTATTTTTAA
8764124 TATTTTTATTT
1 TATTTTTATTT
8764135 ATTTTAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 17 0.71
16 7 0.29
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTTTATTTTTAA
Found at i:8764381 original size:9 final size:9
Alignment explanation
Indices: 8764367--8764396 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
8764357 TAAACTGATT
8764367 TTTATAACA
1 TTTATAACA
8764376 TTTATAACA
1 TTTATAACA
8764385 TTTATAACA
1 TTTATAACA
8764394 TTT
1 TTT
8764397 TTATGGATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (9 bp):
TTTATAACA
Found at i:8764489 original size:29 final size:29
Alignment explanation
Indices: 8764433--8764489 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
8764423 TATATTTTAA
* * **
8764433 CAAAATTTTTAATGTGATACCTTTATTTT
1 CAAAATGTCTAATGTGATACCTAAATTTT
*
8764462 CAAAATGTCTAATGTGGTACCTAAATTT
1 CAAAATGTCTAATGTGATACCTAAATTT
8764490 AATTTTCATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (29 bp):
CAAAATGTCTAATGTGATACCTAAATTTT
Found at i:8764534 original size:42 final size:42
Alignment explanation
Indices: 8764475--8764558 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
8764465 AATGTCTAAT
*
8764475 GTGGTACCTAAATTTAATTTTCATCTACCAATCTAGCACCTC
1 GTGGTACCTAAATTTAATGTTCATCTACCAATCTAGCACCTC
* *
8764517 GTGGTACCTAAATTTAATGTTCGTCTACCAATCTAGTACCTC
1 GTGGTACCTAAATTTAATGTTCATCTACCAATCTAGCACCTC
8764559 CTCTAACGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (42 bp):
GTGGTACCTAAATTTAATGTTCATCTACCAATCTAGCACCTC
Found at i:8765724 original size:29 final size:29
Alignment explanation
Indices: 8765691--8765778 Score: 77
Period size: 29 Copynumber: 3.0 Consensus size: 29
8765681 GTTCAGGTAT
8765691 CACATTGGACATTTTGAAAGTAGAGATAC
1 CACATTGGACATTTTGAAAGTAGAGATAC
** * * * ** * *
8765720 CACATTAATAAATTTATTAAAATTTAGGTAT
1 CACATT-GGACATTT-TGAAAGTAGAGATAC
8765751 CACATTGGACATTTTGAAAGTAGAGATA
1 CACATTGGACATTTTGAAAGTAGAGATA
8765779 TCGTATTAAA
Statistics
Matches: 40, Mismatches: 17, Indels: 4
0.66 0.28 0.07
Matches are distributed among these distances:
29 15 0.38
30 10 0.25
31 15 0.38
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (29 bp):
CACATTGGACATTTTGAAAGTAGAGATAC
Found at i:8766116 original size:19 final size:19
Alignment explanation
Indices: 8766078--8766116 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
8766068 TTTTAATGAG
** *
8766078 TTTTTATTTTTTTCATAAT
1 TTTTTATTTTTTAAAAAAT
8766097 TTTTTATTTTTTAAAAAAT
1 TTTTTATTTTTTAAAAAAT
8766116 T
1 T
8766117 ATTATAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTATTTTTTAAAAAAT
Found at i:8767460 original size:46 final size:46
Alignment explanation
Indices: 8767410--8767582 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
8767400 TGGTTGAGCA
8767410 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
8767456 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
8767501 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
8767549 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
8767583 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8767566 original size:93 final size:93
Alignment explanation
Indices: 8767407--8767577 Score: 324
Period size: 93 Copynumber: 1.8 Consensus size: 93
8767397 GGATGGTTGA
*
8767407 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
8767472 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
8767500 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
8767565 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
8767578 ACTTAGGGGC
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:8775024 original size:46 final size:45
Alignment explanation
Indices: 8774974--8775145 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
8774964 TGGTTGAGCA
8774974 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
8775020 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
8775066 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
8775112 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
8775146 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:8775128 original size:92 final size:92
Alignment explanation
Indices: 8774971--8775140 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
8774961 GGATGGTTGA
* *
8774971 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8775036 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
8775063 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8775128 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
8775141 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:8781505 original size:40 final size:40
Alignment explanation
Indices: 8781461--8781551 Score: 110
Period size: 40 Copynumber: 2.3 Consensus size: 40
8781451 TTATTTATGG
* *
8781461 CACTTAGTGTGCGATACGACATAACTTCGGTTATAAATAA
1 CACTTAGTGTGCGATACGACATAACTTCAGCTATAAATAA
* * * * * *
8781501 CACTTAGTGTGCGATTCGATATAGCTTTAGCTATATATGA
1 CACTTAGTGTGCGATACGACATAACTTCAGCTATAAATAA
8781541 CACTTAGTGTG
1 CACTTAGTGTG
8781552 TGATTTGAGA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (40 bp):
CACTTAGTGTGCGATACGACATAACTTCAGCTATAAATAA
Found at i:8781565 original size:40 final size:40
Alignment explanation
Indices: 8781500--8781592 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
8781490 GTTATAAATA
* *
8781500 ACACTTAGTGTGCGATTCGATATAGCTTTAGCTATATATG
1 ACACTTAGTGTGCGATTCGAGATAGCTTTAGCTATATACG
* * * *
8781540 ACACTTAGTGTGTGATTTGAGATAGCTTTGGCTATGTACG
1 ACACTTAGTGTGCGATTCGAGATAGCTTTAGCTATATACG
*
8781580 GCACTTAGTGTGC
1 ACACTTAGTGTGC
8781593 AAGATATTGA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.37
Consensus pattern (40 bp):
ACACTTAGTGTGCGATTCGAGATAGCTTTAGCTATATACG
Found at i:8785996 original size:22 final size:23
Alignment explanation
Indices: 8785971--8786016 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8785961 CAACCAAATC
8785971 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
8785993 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
8786016 A
1 A
8786017 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:8786022 original size:23 final size:23
Alignment explanation
Indices: 8785978--8786022 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8785968 ATCAATTCAA
*
8785978 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
8786001 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
8786023 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:8791218 original size:16 final size:17
Alignment explanation
Indices: 8791187--8791219 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8791177 TTCATAAGTA
8791187 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
8791204 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
8791220 GCTCCAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:8791565 original size:46 final size:46
Alignment explanation
Indices: 8791500--8791818 Score: 372
Period size: 46 Copynumber: 7.0 Consensus size: 46
8791490 TTATCTTTGA
* * * * * * *
8791500 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC-ATTTCATAT
* * * *** * *
8791546 CAGGTTGCCATGGCATCTTTCAATCATGGTCTTGTTCGTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** ** ***
8791592 TACATTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
8791637 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
8791683 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
8791729 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
8791775 CATGTTGCCATGGTATCTTTCAACCATGGTCTTTCACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
8791819 TTCAGAAAGC
Statistics
Matches: 237, Mismatches: 34, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
45 42 0.18
46 195 0.82
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:8791737 original size:137 final size:138
Alignment explanation
Indices: 8791500--8791815 Score: 382
Period size: 137 Copynumber: 2.3 Consensus size: 138
8791490 TTATCTTTGA
* * * * * * * *
8791500 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTTTCTGTCAGGTTGCCATGGCATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGCATCTT
* *** * * * **
8791565 TCAATCATGGTCTTGTTCGTTTCATGTTACATTGCCATGGTATCTTTCAACCATGGTCTTATTCA
66 TCAACCATGGTCTTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACA
* *
8791630 -TTCCCGT
131 TTTCACAT
** *
8791637 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGCATCTT
** *
8791702 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
8791767 TTTCATAT
131 TTTCACAT
*
8791775 CATGTTGCCATGGTATCTTTCAACCATGGTCTTTCACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
8791816 CATTTCAGAA
Statistics
Matches: 151, Mismatches: 27, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
137 107 0.71
138 44 0.29
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.41
Consensus pattern (138 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGCATCTT
TCAACCATGGTCTTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACA
TTTCACAT
Found at i:8797710 original size:40 final size:40
Alignment explanation
Indices: 8797665--8797798 Score: 133
Period size: 40 Copynumber: 3.4 Consensus size: 40
8797655 TTATTTGTGG
*
8797665 CACTTAGTGTGCGATACGACATAGCTTCAACTCTATATGA
1 CACTTAGTGTGCGATACGACATAGCTTCAACTATATATGA
** ** *
8797705 CACTTAGTGTGCGATTTGACATAGCTTCGGCTATATATGG
1 CACTTAGTGTGCGATACGACATAGCTTCAACTATATATGA
* ** * ** * *
8797745 CACTTAGTGTGCAATTTGAGATAGCTTCGGCTATGTACGA
1 CACTTAGTGTGCGATACGACATAGCTTCAACTATATATGA
*
8797785 CACTTAGTATGCGA
1 CACTTAGTGTGCGA
8797799 GATATTGAGT
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (40 bp):
CACTTAGTGTGCGATACGACATAGCTTCAACTATATATGA
Found at i:8797825 original size:28 final size:28
Alignment explanation
Indices: 8797785--8797838 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
8797775 CTATGTACGA
*
8797785 CACTTAGTATGCGAGATATTGAGTATGG
1 CACTTAGTATGCGAGACATTGAGTATGG
*
8797813 CACTTAGTGTGCGAGACATTGAGTAT
1 CACTTAGTATGCGAGACATTGAGTAT
8797839 TCAACGACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
CACTTAGTATGCGAGACATTGAGTATGG
Found at i:8819052 original size:18 final size:18
Alignment explanation
Indices: 8819029--8819107 Score: 61
Period size: 18 Copynumber: 4.4 Consensus size: 18
8819019 ATAAGTATAA
8819029 AATTAACCAAATTAATCG
1 AATTAACCAAATTAATCG
** **
8819047 AATTAACTGAATTACCCG
1 AATTAACCAAATTAATCG
*
8819065 AATTACCCAAATT-ATCTG
1 AATTAACCAAATTAATC-G
*** *
8819083 AATTAATTGAATTAATTG
1 AATTAACCAAATTAATCG
8819101 AATTAAC
1 AATTAAC
8819108 TGAATTATTT
Statistics
Matches: 44, Mismatches: 15, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
17 1 0.02
18 41 0.93
19 2 0.05
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (18 bp):
AATTAACCAAATTAATCG
Found at i:8819059 original size:27 final size:27
Alignment explanation
Indices: 8819029--8819114 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 27
8819019 ATAAGTATAA
*
8819029 AATTAACCAAATTAATCGAATTAACTG
1 AATTAACCGAATTAATCGAATTAACTG
* ** * *
8819056 AATTACCCGAATTACCCAAATTATCTG
1 AATTAACCGAATTAATCGAATTAACTG
** *
8819083 AATTAATTGAATTAATTGAATTAACTG
1 AATTAACCGAATTAATCGAATTAACTG
8819110 AATTA
1 AATTA
8819115 TTTGTATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (27 bp):
AATTAACCGAATTAATCGAATTAACTG
Found at i:8819111 original size:18 final size:18
Alignment explanation
Indices: 8819038--8819114 Score: 75
Period size: 18 Copynumber: 4.3 Consensus size: 18
8819028 AAATTAACCA
8819038 AATTAATCGAATTAACTG
1 AATTAATCGAATTAACTG
** * **
8819056 AATTACCCGAATTACCCA
1 AATTAATCGAATTAACTG
*
8819074 AATT-ATCTGAATTAATTG
1 AATTAATC-GAATTAACTG
*
8819092 AATTAATTGAATTAACTG
1 AATTAATCGAATTAACTG
8819110 AATTA
1 AATTA
8819115 TTTGTATAAA
Statistics
Matches: 44, Mismatches: 13, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
17 1 0.02
18 41 0.93
19 2 0.05
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (18 bp):
AATTAATCGAATTAACTG
Found at i:8819335 original size:18 final size:18
Alignment explanation
Indices: 8819312--8819346 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8819302 TTTATTTATT
8819312 AATTTTTTCAGTTAACCA
1 AATTTTTTCAGTTAACCA
*
8819330 AATTTTTTCGGTTAACC
1 AATTTTTTCAGTTAACC
8819347 GACTGATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.17, G:0.09, T:0.46
Consensus pattern (18 bp):
AATTTTTTCAGTTAACCA
Found at i:8826157 original size:20 final size:20
Alignment explanation
Indices: 8826090--8826165 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
8826080 ACAAAATCTA
* *
8826090 AAAGTATCGATTCCTTTAAC
1 AAAGTATCAATACCTTTAAC
* * **
8826110 AAAGTATCGATACTTTTCCC
1 AAAGTATCAATACCTTTAAC
***
8826130 ATTTTATCAATACCTTTAAC
1 AAAGTATCAATACCTTTAAC
8826150 AAAGTATCAATACCTT
1 AAAGTATCAATACCTT
8826166 CCCTATTTTA
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.37
Consensus pattern (20 bp):
AAAGTATCAATACCTTTAAC
Found at i:8826157 original size:40 final size:40
Alignment explanation
Indices: 8826102--8826183 Score: 121
Period size: 40 Copynumber: 2.0 Consensus size: 40
8826092 AGTATCGATT
* *
8826102 CCTTTAACAAAGTATCGATACTTTTCCC-ATTTTATCAATA
1 CCTTTAACAAAGTATCAATAC-CTTCCCTATTTTATCAATA
*
8826142 CCTTTAACAAAGTATCAATACCTTCCCTATTTTATCGATA
1 CCTTTAACAAAGTATCAATACCTTCCCTATTTTATCAATA
8826182 CC
1 CC
8826184 CCTACCTGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 5 0.13
40 33 0.87
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.38
Consensus pattern (40 bp):
CCTTTAACAAAGTATCAATACCTTCCCTATTTTATCAATA
Found at i:8828558 original size:29 final size:29
Alignment explanation
Indices: 8828500--8828559 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
8828490 TGAAAATGTT
** *
8828500 TTGTTTTTATTTTAATTTTTCTTATATAA
1 TTGTTTTTATTTTAATTAATCATATATAA
*
8828529 TTGTTTATT-TTTTAATTAATCATATTTAA
1 TTGTTT-TTATTTTAATTAATCATATATAA
8828558 TT
1 TT
8828560 TAATTAATCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 24 0.92
30 2 0.08
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (29 bp):
TTGTTTTTATTTTAATTAATCATATATAA
Found at i:8828561 original size:19 final size:18
Alignment explanation
Indices: 8828539--8828595 Score: 69
Period size: 19 Copynumber: 3.0 Consensus size: 18
8828529 TTGTTTATTT
*
8828539 TTTAATTAATCATATTTAA
1 TTTAATTAATCATAATT-A
8828558 TTTAATTAATCATAATTA
1 TTTAATTAATCATAATTA
*
8828576 TTTAACCTTAAGCATAATTA
1 TTTAA--TTAATCATAATTA
8828596 ACTAATTTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 6 0.18
19 16 0.47
20 12 0.35
ACGTcount: A:0.42, C:0.09, G:0.02, T:0.47
Consensus pattern (18 bp):
TTTAATTAATCATAATTA
Found at i:8832735 original size:35 final size:35
Alignment explanation
Indices: 8832612--8832738 Score: 148
Period size: 35 Copynumber: 3.6 Consensus size: 35
8832602 TCTTCATTGA
* *
8832612 AATACCATAACTACATTTCACAACTCAGTATAGGA-
1 AATACCATACCTACGTTTCACAACTCAGTATA-GAT
* *** *
8832647 AATGCCATACCTACGTTTTTTAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATAGAT
* *
8832682 AATACCATACCTACGTTTCACAACTCAGTATTGTT
1 AATACCATACCTACGTTTCACAACTCAGTATAGAT
*
8832717 AACACCATACCTACGTTTCACA
1 AATACCATACCTACGTTTCACA
8832739 CTTTGTCATG
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
34 2 0.03
35 75 0.97
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATAGAT
Found at i:8840822 original size:56 final size:55
Alignment explanation
Indices: 8840747--8841017 Score: 281
Period size: 56 Copynumber: 4.9 Consensus size: 55
8840737 AAATACAAGT
**
8840747 TTTAAAAAAAAAGAATTTTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCAGTAA
1 TTTAAAAAAAATTAATTTTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCAGTAA
* * *
8840802 TTT-AAAAAAATTAATTTTTTTT-GTGTTGGCCTGTCAATGGCCTGTACCAGAATACGA
1 TTTAAAAAAAATTAATTTTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCAG--TA--A
* * *
8840859 GTTTTTAAAAAAAA--AA-----ATTGGCTACTGGCCCGTCAATGGCCGGCACCAGTAA
1 ---TTTAAAAAAAATTAATTTTTTTTGG-TGCTGGCCTGTCAATGGCCGGCACCAGTAA
* *
8840911 TTTAAAAAAAATTAATTTTTTTTTGGTGATGGCCTATCAATGGCCGGCACCAGTAA
1 TTTAAAAAAAATTAA-TTTTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCAGTAA
* * *
8840967 TTTAAAAAAAATCAATTTTTTTTGGTGTTGGCCTGTCAATGGCCGACACCA
1 TTTAAAAAAAATTAATTTTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCA
8841018 AAATACGAGT
Statistics
Matches: 178, Mismatches: 20, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
49 11 0.06
51 2 0.01
52 1 0.01
53 25 0.14
54 21 0.12
55 39 0.22
56 62 0.35
57 5 0.03
59 2 0.01
60 3 0.02
61 7 0.04
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (55 bp):
TTTAAAAAAAATTAATTTTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCAGTAA
Found at i:8844473 original size:21 final size:20
Alignment explanation
Indices: 8844444--8844501 Score: 50
Period size: 18 Copynumber: 3.0 Consensus size: 20
8844434 TTTATTTTTT
*
8844444 ATTTTAATTTAATTTTATTTC
1 ATTTCAATTT-ATTTTATTTC
8844465 ATTTCAA-TTATTTT-TTTC
1 ATTTCAATTTATTTTATTTC
* *
8844483 AATTC-ATTTCATATTATTT
1 ATTTCAATTT-ATTTTATTT
8844502 TTTTCATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 1 0.03
18 10 0.32
19 9 0.29
20 5 0.16
21 6 0.19
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTCAATTTATTTTATTTC
Found at i:8844500 original size:38 final size:37
Alignment explanation
Indices: 8844466--8844590 Score: 140
Period size: 38 Copynumber: 3.5 Consensus size: 37
8844456 TTTTATTTCA
8844466 TTTCA-ATTATTTTTTTCAATTCATTTCATATTATTTT
1 TTTCATATTATTTTTTTCAATT-ATTTCATATTATTTT
*
8844503 TTTCATATTATTATTTTC---T-TTTCATATTA-TTT
1 TTTCATATTATTTTTTTCAATTATTTCATATTATTTT
8844535 TTT-ATATTATTTTTTTTCATATTATTTTCATATTATTTT
1 TTTCATATTA-TTTTTTTCA-ATTA-TTTCATATTATTTT
8844574 TTTCA-ATTCATTTTTTT
1 TTTCATATT-ATTTTTTT
8844591 TTCATATTAA
Statistics
Matches: 75, Mismatches: 2, Indels: 20
0.77 0.02 0.21
Matches are distributed among these distances:
31 6 0.08
32 13 0.17
33 10 0.13
35 1 0.01
36 1 0.01
37 5 0.07
38 21 0.28
39 16 0.21
40 2 0.03
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (37 bp):
TTTCATATTATTTTTTTCAATTATTTCATATTATTTT
Found at i:8844506 original size:14 final size:14
Alignment explanation
Indices: 8844489--8844590 Score: 99
Period size: 14 Copynumber: 7.2 Consensus size: 14
8844479 TTTCAATTCA
8844489 TTTCATATTATTTT
1 TTTCATATTATTTT
8844503 TTTCATATTATTATTTTCT
1 TTTC--A-TATTA-TTT-T
8844522 TTTCATATTA-TTT
1 TTTCATATTATTTT
8844535 TTT-ATATTATTTTT
1 TTTCATATTA-TTTT
8844549 TTTCATATTA---T
1 TTTCATATTATTTT
8844560 TTTCATATTATTTT
1 TTTCATATTATTTT
8844574 TTTCA-ATTCATTTT
1 TTTCATATT-ATTTT
8844588 TTT
1 TTT
8844591 TTCATATTAA
Statistics
Matches: 76, Mismatches: 0, Indels: 24
0.76 0.00 0.24
Matches are distributed among these distances:
11 11 0.14
12 6 0.08
13 7 0.09
14 26 0.34
15 6 0.08
16 6 0.08
17 6 0.08
18 3 0.04
19 5 0.07
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTCATATTATTTT
Found at i:8844524 original size:19 final size:18
Alignment explanation
Indices: 8844494--8844617 Score: 70
Period size: 18 Copynumber: 7.1 Consensus size: 18
8844484 ATTCATTTCA
8844494 TATTA-TTTTTTTCATAT
1 TATTATTTTTTTTCATAT
8844511 TATTATTTTCTTTTCATAT
1 TATTATTTT-TTTTCATAT
* *
8844530 TATT-TTTTATATT-ATTTT
1 TATTATTTT-TTTTCA-TAT
* *
8844548 TTTTCATATTATTTTC--A-
1 TATT-AT-TTTTTTTCATAT
8844565 TATTA-TTTTTTTCA-AT
1 TATTATTTTTTTTCATAT
8844581 TCA-T-TTTTTTTTCATAT
1 T-ATTATTTTTTTTCATAT
* *
8844598 TAATATTTTTTTTCAAAT
1 TATTATTTTTTTTCATAT
8844616 TA
1 TA
8844618 ATTAGAAGTG
Statistics
Matches: 83, Mismatches: 10, Indels: 27
0.69 0.08 0.22
Matches are distributed among these distances:
14 7 0.08
15 1 0.01
16 13 0.16
17 14 0.17
18 29 0.35
19 13 0.16
20 4 0.05
21 2 0.02
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (18 bp):
TATTATTTTTTTTCATAT
Found at i:8844539 original size:26 final size:25
Alignment explanation
Indices: 8844510--8844589 Score: 92
Period size: 25 Copynumber: 3.1 Consensus size: 25
8844500 TTTTTTCATA
8844510 TTATTATTTTCTTTTCATATTATTTTT
1 TTATTATTTT-TTTTCATATTA-TTTT
8844537 TATATTATTTTTTTTCATATTATTTT
1 T-TATTATTTTTTTTCATATTATTTT
*
8844563 CATATTA-TTTTTTTCA-ATTCATTTT
1 -TTATTATTTTTTTTCATATT-ATTTT
8844588 TT
1 TT
8844590 TTTCATATTA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
24 4 0.08
25 14 0.29
26 9 0.19
27 12 0.25
28 9 0.19
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (25 bp):
TTATTATTTTTTTTCATATTATTTT
Found at i:8844541 original size:12 final size:12
Alignment explanation
Indices: 8844521--8844575 Score: 58
Period size: 12 Copynumber: 4.4 Consensus size: 12
8844511 TATTATTTTC
*
8844521 TTTTCATATTAT
1 TTTTTATATTAT
8844533 TTTTTATATTATTT
1 TTTTTATATTA--T
8844547 TTTTTCATATTA-
1 TTTTT-ATATTAT
*
8844559 TTTTCATATTAT
1 TTTTTATATTAT
8844571 TTTTT
1 TTTTT
8844576 TCAATTCATT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 6 0.17
12 18 0.50
14 6 0.17
15 6 0.17
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTTATATTAT
Found at i:8844566 original size:57 final size:58
Alignment explanation
Indices: 8844497--8844609 Score: 151
Period size: 57 Copynumber: 2.0 Consensus size: 58
8844487 CATTTCATAT
* **
8844497 TATTTTTTTCATATTATTATTTTCTTTTCATATTATTTTTT-ATATT-AT-TTTTTTTCA
1 TATTATTTTCATATTATTATTTTCAATTCAT-TT-TTTTTTCATATTAATATTTTTTTCA
*
8844554 TATTATTTTCATATTATTTTTTTCAATTCATTTTTTTTTCATATTAATATTTTTTT
1 TATTATTTTCATATTATTATTTTCAATTCATTTTTTTTTCATATTAATATTTTTTT
8844610 TCAAATTAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
55 6 0.12
56 7 0.14
57 29 0.59
58 7 0.14
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (58 bp):
TATTATTTTCATATTATTATTTTCAATTCATTTTTTTTTCATATTAATATTTTTTTCA
Found at i:8844608 original size:71 final size:69
Alignment explanation
Indices: 8844471--8844599 Score: 187
Period size: 71 Copynumber: 1.9 Consensus size: 69
8844461 TTTCATTTCA
8844471 ATTATTTTTTTCAATTCATTTCATATTATTTTTTTCATATTATTATTTTCTTTTCATATTATTTT
1 ATTATTTTTTTCAATTCATTTCATATTATTTTTTTCATATTATTATTTTCTTTTCATATTATTTT
8844536 TTAT
66 TTAT
8844540 ATTATTTTTTTTCATATT-ATTTTCATATTATTTTTTTCA-ATTCA-T-TTTT-TTTTCATATTA
1 ATTA-TTTTTTTCA-ATTCA-TTTCATATTATTTTTTTCATATT-ATTATTTTCTTTTCATATTA
8844600 ATATTTTTTT
Statistics
Matches: 56, Mismatches: 0, Indels: 9
0.86 0.00 0.14
Matches are distributed among these distances:
68 11 0.20
69 8 0.14
70 14 0.25
71 23 0.41
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.68
Consensus pattern (69 bp):
ATTATTTTTTTCAATTCATTTCATATTATTTTTTTCATATTATTATTTTCTTTTCATATTATTTT
TTAT
Found at i:8844902 original size:5 final size:5
Alignment explanation
Indices: 8844894--8844970 Score: 91
Period size: 5 Copynumber: 14.6 Consensus size: 5
8844884 AAACTTTTTT
* *
8844894 TTTCA TTTCT TTTCA TTTTCA TTTCA TTTTCA TTTTA TTTCA TTTCAA
1 TTTCA TTTCA TTTCA -TTTCA TTTCA -TTTCA TTTCA TTTCA TTTC-A
*
8844942 TTTCA TTTCA TTCTAA TTTCA TTTCA TTT
1 TTTCA TTTCA TT-TCA TTTCA TTTCA TTT
8844971 AAATTATTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
5 43 0.69
6 19 0.31
ACGTcount: A:0.19, C:0.17, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTCA
Found at i:8844913 original size:11 final size:11
Alignment explanation
Indices: 8844894--8844970 Score: 88
Period size: 11 Copynumber: 7.3 Consensus size: 11
8844884 AAACTTTTTT
*
8844894 TTTCA-TTTCT
1 TTTCATTTTCA
8844904 TTTCATTTTCA
1 TTTCATTTTCA
8844915 TTTCATTTTCA
1 TTTCATTTTCA
*
8844926 TTTTA-TTTCA
1 TTTCATTTTCA
*
8844936 TTTCAATTTCA
1 TTTCATTTTCA
* *
8844947 TTTCATTCTAA
1 TTTCATTTTCA
8844958 TTTCA-TTTCA
1 TTTCATTTTCA
8844968 TTT
1 TTT
8844971 AAATTATTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
10 20 0.35
11 37 0.65
ACGTcount: A:0.19, C:0.17, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTCATTTTCA
Found at i:8844951 original size:16 final size:16
Alignment explanation
Indices: 8844894--8844975 Score: 96
Period size: 16 Copynumber: 5.1 Consensus size: 16
8844884 AAACTTTTTT
* *
8844894 TTTCATTTCTTTTCAT
1 TTTCATTTCATTTCAA
8844910 TTTCATTTCATTTTC-A
1 TTTCATTTCA-TTTCAA
*
8844926 TTTTATTTCATTTCAA
1 TTTCATTTCATTTCAA
8844942 TTTCATTTCA-TTCTAA
1 TTTCATTTCATTTC-AA
*
8844958 TTTCATTTCATTTAAA
1 TTTCATTTCATTTCAA
8844974 TT
1 TT
8844976 ATTTTTTTCA
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
15 7 0.12
16 44 0.77
17 6 0.11
ACGTcount: A:0.22, C:0.16, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTCATTTCATTTCAA
Found at i:8844989 original size:19 final size:19
Alignment explanation
Indices: 8844963--8845004 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
8844953 TCTAATTTCA
8844963 TTTCATTTAAA-TTATTTT
1 TTTCATTTAAATTTATTTT
8844981 TTTCAATTTAAATTTATTTT
1 TTTC-ATTTAAATTTATTTT
8845001 TTTC
1 TTTC
8845005 TCAATTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.18
19 7 0.32
20 11 0.50
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTCATTTAAATTTATTTT
Found at i:8845000 original size:18 final size:18
Alignment explanation
Indices: 8844963--8845001 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8844953 TCTAATTTCA
*
8844963 TTTCATTTAAATTATTTT
1 TTTCATTTAAATTATATT
8844981 TTTCAATTTAAATT-TATT
1 TTTC-ATTTAAATTATATT
8844999 TTT
1 TTT
8845002 TTCTCAATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTCATTTAAATTATATT
Found at i:8845020 original size:22 final size:23
Alignment explanation
Indices: 8844962--8845025 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 23
8844952 TTCTAATTTC
* *
8844962 ATTTCATTTAAATTATTTTTTTCA
1 ATTTCATTTATATT-TTTTTCTCA
* *
8844986 ATTTAAATT-TATTTTTTTCTCA
1 ATTTCATTTATATTTTTTTCTCA
*
8845008 A-TTCATTTATATTATTTT
1 ATTTCATTTATATTTTTTT
8845026 AATTTTAATT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
21 5 0.16
22 17 0.53
23 3 0.09
24 7 0.22
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTCATTTATATTTTTTTCTCA
Found at i:8845215 original size:49 final size:46
Alignment explanation
Indices: 8845161--8845326 Score: 124
Period size: 49 Copynumber: 3.3 Consensus size: 46
8845151 AAGTTTCTCC
8845161 CATTTCATTTAAATTTATCTTTCTTTCAAATTTAATTTCATTTTTTTCT
1 CATTTCATTTAAATTTAT-TTTCTTTC-AATTTAATTT-ATTTTTTTCT
8845210 CATTTCATTTCAATTAAATTT-TTTCCTCATTTC-ATTTAAATTTATCTTTCTTTC-
1 CATTTCA--T---TTAAATTTATTT--TC-TTTCAATTT-AATTTAT-TTT-TTTCT
* * *
8845264 AATTTTCATTTAAATTT-TTTACCGTTTCATTTTAATTTATTTTTTTCT
1 CA-TTTCATTTAAATTTATTT-TC-TTTCAATTTAATTTATTTTTTTCT
8845312 CATTTCATTTAAATT
1 CATTTCATTTAAATT
8845327 ATCAATTTTT
Statistics
Matches: 97, Mismatches: 6, Indels: 30
0.73 0.05 0.23
Matches are distributed among these distances:
47 17 0.18
48 4 0.04
49 19 0.20
50 14 0.14
51 1 0.01
52 2 0.02
53 8 0.08
54 19 0.20
55 13 0.13
ACGTcount: A:0.25, C:0.14, G:0.01, T:0.60
Consensus pattern (46 bp):
CATTTCATTTAAATTTATTTTCTTTCAATTTAATTTATTTTTTTCT
Found at i:8845224 original size:27 final size:25
Alignment explanation
Indices: 8845190--8845328 Score: 117
Period size: 27 Copynumber: 5.4 Consensus size: 25
8845180 TTTCTTTCAA
8845190 ATTTAATTTCATTTTTTTCTCATTTC
1 ATTTAATTT-ATTTTTTTCTCATTTC
* *
8845216 ATTTCAATTAAATTTTTTCCTCATTTC
1 ATTT-AATT-TATTTTTTTCTCATTTC
*
8845243 ATTTAAATTTATCTTTCTTTC-AATTTTC
1 ATTT-AATTTAT-TTT-TTTCTCA-TTTC
* *
8845271 ATTTAA---ATTTTTTAC-CGTTTC
1 ATTTAATTTATTTTTTTCTCATTTC
8845292 ATTTTAATTTATTTTTTTCTCATTTC
1 A-TTTAATTTATTTTTTTCTCATTTC
*
8845318 ATTTAAATTAT
1 ATTTAATTTAT
8845329 CAATTTTTCC
Statistics
Matches: 91, Mismatches: 12, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
21 5 0.05
22 8 0.09
23 3 0.03
24 2 0.02
25 17 0.19
26 12 0.13
27 33 0.36
28 11 0.12
ACGTcount: A:0.24, C:0.14, G:0.01, T:0.61
Consensus pattern (25 bp):
ATTTAATTTATTTTTTTCTCATTTC
Found at i:8845225 original size:76 final size:75
Alignment explanation
Indices: 8845119--8845326 Score: 258
Period size: 76 Copynumber: 2.7 Consensus size: 75
8845109 CTATCTTTCC
* *
8845119 ATTTAATTTTTTTCTCATCTT-ATTTAAATTAAAAGTTTCTCCCATTTCATTTAAATTTATCTTT
1 ATTTAATTTTTTTCTCAT-TTCATTTAAATT-AAATTTTTTCCCATTTCATTTAAATTTATCTTT
8845183 CTTTCAAATTTA
64 CTTTCAAATTTA
* *
8845195 ATTTCATTTTTTTCTCATTTCATTTCAATTAAATTTTTTCCTCATTTCATTTAAATTTATCTTTC
1 ATTTAATTTTTTTCTCATTTCATTTAAATTAAATTTTTTCC-CATTTCATTTAAATTTATCTTTC
* *
8845260 TTTCAATTTTC
65 TTTCAAATTTA
* * * * * *
8845271 ATTTAAATTTTTTAC-CGTTTCATTTTAATTTATTTTTTTCTCATTTCATTTAAATT
1 ATTT-AATTTTTTTCTCATTTCATTTAAATTAAATTTTTTCCCATTTCATTTAAATT
8845327 ATCAATTTTT
Statistics
Matches: 116, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
75 26 0.22
76 82 0.71
77 8 0.07
ACGTcount: A:0.25, C:0.14, G:0.01, T:0.59
Consensus pattern (75 bp):
ATTTAATTTTTTTCTCATTTCATTTAAATTAAATTTTTTCCCATTTCATTTAAATTTATCTTTCT
TTCAAATTTA
Found at i:8845291 original size:28 final size:27
Alignment explanation
Indices: 8845163--8845302 Score: 84
Period size: 28 Copynumber: 5.3 Consensus size: 27
8845153 GTTTCTCCCA
* *
8845163 TTTCATTTAAATTTATCTTTCTTTCAAA
1 TTTCATTTAAATTTATCTTCCTTTC-AT
* * *
8845191 TTTAATTT-CATTT-TTTTCTCATTTCA-
1 TTTCATTTAAATTTATCTTC-C-TTTCAT
*
8845217 TTTCAATTAAATTT-T-TTCC--TCA-
1 TTTCATTTAAATTTATCTTCCTTTCAT
*
8845239 TTTCATTTAAATTTATCTTTCTTTCAAT
1 TTTCATTTAAATTTATCTTCCTTTC-AT
8845267 TTTCATTTAAATTT-T-TTACCGTTTCAT
1 TTTCATTTAAATTTATCTT-CC-TTTCAT
*
8845294 TTTAATTTA
1 TTTCATTTA
8845303 TTTTTTTCTC
Statistics
Matches: 90, Mismatches: 11, Indels: 23
0.73 0.09 0.19
Matches are distributed among these distances:
22 16 0.18
23 1 0.01
24 3 0.03
25 1 0.01
26 16 0.18
27 24 0.27
28 29 0.32
ACGTcount: A:0.25, C:0.14, G:0.01, T:0.60
Consensus pattern (27 bp):
TTTCATTTAAATTTATCTTCCTTTCAT
Found at i:8848414 original size:55 final size:56
Alignment explanation
Indices: 8848300--8848668 Score: 375
Period size: 54 Copynumber: 6.6 Consensus size: 56
8848290 GATAAATTTA
8848300 GTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTTCAA-TTTTTTTT-AATACTG
1 GTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTTCAATTTTTTTTTAAATACTG
* * *
8848354 ATGCCGACCATTGACAGACCAGCACCAAAAAAATTTCAATTTTTTTTT-AATACTG
1 GTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTTCAATTTTTTTTTAAATACTG
* **
8848409 GTGCCGGCCATTGATAGGCCAGCA-CAAAAAAAAATC-A-TTTTTTTT-AATACTG
1 GTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTTCAATTTTTTTTTAAATACTG
* * * * *
8848461 GCGCCGGCCATTAACAGGCCAGCACTAAAAAAA-AT--ATTTTTTTTGAAAACTCATATTCTG
1 GTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTTCAATTTTTTTT--TAA---ATA--CTG
** * *
8848521 GTGCCGGCCATTGACAGGTTAGCACC-AAAAAATTTTAATTTTTTTTTAAATTACTA
1 GTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTTCAATTTTTTTTTAAA-TACTG
* *
8848577 GTGCCAGCCATTGACAGGCCAGCA-CAAAAAAATTTTGAATTTTTTTTTTTAAATTACTG
1 GTGCCGGCCATTGACAGGCCAGCACCAAAAAAA-TTTCAA--TTTTTTTTTAAA-TACTG
* *
8848636 GTGCTGGCCATTGACAAGCCAGCACCAAAAAAA
1 GTGCCGGCCATTGACAGGCCAGCACCAAAAAAA
8848669 ATTTTTTTTC
Statistics
Matches: 265, Mismatches: 30, Indels: 34
0.81 0.09 0.10
Matches are distributed among these distances:
51 1 0.00
52 45 0.17
53 8 0.03
54 46 0.17
55 37 0.14
56 29 0.11
57 6 0.02
58 5 0.02
59 44 0.17
60 35 0.13
62 9 0.03
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30
Consensus pattern (56 bp):
GTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTTCAATTTTTTTTTAAATACTG
Found at i:8848606 original size:112 final size:109
Alignment explanation
Indices: 8848300--8848612 Score: 255
Period size: 107 Copynumber: 2.8 Consensus size: 109
8848290 GATAAATTTA
** *
8848300 GTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTTCAATTTTTTTTAATACT-GATGCC-GACC
1 GTGCCGGCCATTGACAGGCCAGCA-CAAAAAAAAAT-AATTTTTTTTAATACTAG-CGCCAG-CC
* * * ** * *
8848363 ATTGACAGACCAGCACCAAAAAAATTTCAATTTTT----TTTTA-ATACTG
62 ATTAACAGGCCAGCACAAAAAAAATTT---TTTTTGAAAACTCATATTCTG
* * * *
8848409 GTGCCGGCCATTGATAGGCCAGCACAAAAAAAAATCATTTTTTTTAATACTGGCGCCGGCCATTA
1 GTGCCGGCCATTGACAGGCCAGCACAAAAAAAAATAATTTTTTTTAATACTAGCGCCAGCCATTA
8848474 ACAGGCCAGCACTAAAAAAAATATTTTTTTTGAAAACTCATATTCTG
66 ACAGGCCAGCAC--AAAAAAA-ATTTTTTTTGAAAACTCATATTCTG
** *** *
8848521 GTGCCGGCCATTGACAGGTTAGCACCAAAAAATTTTAATTTTTTTTTAAATTACTAGTGCCAGCC
1 GTGCCGGCCATTGACAGGCCAGCA-CAAAAAAAAATAA-TTTTTTTT-AA-TACTAGCGCCAGCC
*
8848586 ATTGACAGGCCAGCAC-AAAAAAATTTT
62 ATTAACAGGCCAGCACAAAAAAAATTTT
8848613 GAATTTTTTT
Statistics
Matches: 167, Mismatches: 23, Indels: 25
0.78 0.11 0.12
Matches are distributed among these distances:
107 39 0.23
108 11 0.07
109 29 0.17
110 4 0.02
111 2 0.01
112 31 0.19
113 15 0.09
114 8 0.05
115 2 0.01
116 26 0.16
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (109 bp):
GTGCCGGCCATTGACAGGCCAGCACAAAAAAAAATAATTTTTTTTAATACTAGCGCCAGCCATTA
ACAGGCCAGCACAAAAAAAATTTTTTTTGAAAACTCATATTCTG
Found at i:8848704 original size:175 final size:166
Alignment explanation
Indices: 8848355--8848732 Score: 425
Period size: 175 Copynumber: 2.2 Consensus size: 166
8848345 TTAATACTGA
* * * * *
8848355 TGCCGACCATTGACAGACCAGCACCAAAAAAATTTCAATTTTTTTTTAATACTGGTGCCGGCCAT
1 TGCCGGCCATTGACAGGCAAGCACC-AAAAAATTTCAATTTTTTTTTAATACTAGTGCCAGCCAT
* *
8848420 TGATAGGCCAGCACAAAAAAAAATCATTTTTTTTAATACTGGCGCCGGCCATTAACAGGCCAGCA
65 TGACAGGCCAGCACAAAAAAAAATCATTTTTTTTAATACTGGCGCCGGCCATTAACAAGCCAGCA
* ** *
8848485 CTAAAAAAAATATTTTTTTTGAAAACTCATATTCTGG
130 CCAAAAAAAATATTTTTTTAAAAAACTCATATTCTAG
** *
8848522 TGCCGGCCATTGACAGGTTAGCACCAAAAAATTTTAATTTTTTTTTAAATTACTAGTGCCAGCCA
1 TGCCGGCCATTGACAGGCAAGCACCAAAAAATTTCAATTTTTTTTT-AA-TACTAGTGCCAGCCA
** * * *
8848587 TTGACAGGCCAGCACAAAAAAATTTTGAATTTTTTTTTTTAAATTACTGGTGCTGGCCATTGACA
64 TTGACAGGCCAGCACAAAAAAA-----AATCATTTTTTTT-AA-TACTGGCGCCGGCCATTAACA
* **
8848652 AGCCAGCACCAAAAAAAAT-TTTTTTTCAAAAAATTTGTATTCTAG
122 AGCCAGCACCAAAAAAAATATTTTTTT-AAAAAACTCATATTCTAG
* *
8848697 TGCCGGCCATTAACAGGGAAGCACCAAAAAAATTTC
1 TGCCGGCCATTGACAGGCAAGCACC-AAAAAATTTC
8848733 TGTTTTTTGA
Statistics
Matches: 175, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
166 20 0.11
167 23 0.13
168 34 0.19
173 11 0.06
174 9 0.05
175 69 0.39
176 9 0.05
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.31
Consensus pattern (166 bp):
TGCCGGCCATTGACAGGCAAGCACCAAAAAATTTCAATTTTTTTTTAATACTAGTGCCAGCCATT
GACAGGCCAGCACAAAAAAAAATCATTTTTTTTAATACTGGCGCCGGCCATTAACAAGCCAGCAC
CAAAAAAAATATTTTTTTAAAAAACTCATATTCTAG
Found at i:8850469 original size:15 final size:15
Alignment explanation
Indices: 8850449--8850480 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8850439 GTCTTATCAC
8850449 TCACAAACCTTCTTT
1 TCACAAACCTTCTTT
8850464 TCACAAACCTTCTTT
1 TCACAAACCTTCTTT
8850479 TC
1 TC
8850481 TTGATTGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.34, G:0.00, T:0.41
Consensus pattern (15 bp):
TCACAAACCTTCTTT
Found at i:8851190 original size:21 final size:21
Alignment explanation
Indices: 8851180--8851235 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
8851170 TATTTAATTA
8851180 AAAATATTTAATAATTATATT
1 AAAATATTTAATAATTATATT
* *
8851201 TAAATATTTAA-AATATATTTT
1 AAAATATTTAATAAT-TATATT
*
8851222 ATAAATAATTAATA
1 A-AAATATTTAATA
8851236 TTAATTGCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.11
21 15 0.54
22 9 0.32
23 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
AAAATATTTAATAATTATATT
Found at i:8857596 original size:25 final size:23
Alignment explanation
Indices: 8857570--8857614 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
8857560 TACTAAATAT
* *
8857570 ATATATATTTTTTATTTTTAATC
1 ATATTTATATTTTATTTTTAATC
8857593 ATATTTATATTTTATTTTTAAT
1 ATATTTATATTTTATTTTTAAT
8857615 TTTAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
ATATTTATATTTTATTTTTAATC
Found at i:8857610 original size:29 final size:27
Alignment explanation
Indices: 8857578--8857632 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
8857568 ATATATATAT
* *
8857578 TTTTTATTTTTAATCATATTTATATTTTA
1 TTTTTAATTTTAAT-ATAATTA-ATTTTA
8857607 TTTTTAATTTTAATATAATTAATTTT
1 TTTTTAATTTTAATATAATTAATTTT
8857633 TATTATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.21
28 6 0.25
29 13 0.54
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTTAATTTTAATATAATTAATTTTA
Found at i:8857695 original size:22 final size:22
Alignment explanation
Indices: 8857670--8857728 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
8857660 TTAAAATTTA
8857670 TTTTAATATATTTTTATTTGAT
1 TTTTAATATATTTTTATTTGAT
** * ** *
8857692 TTTTGTTTTAAATGTATTTGAT
1 TTTTAATATATTTTTATTTGAT
8857714 TATTTAATATATTTT
1 T-TTTAATATATTTT
8857729 AAAATTTTTT
Statistics
Matches: 24, Mismatches: 12, Indels: 1
0.65 0.32 0.03
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (22 bp):
TTTTAATATATTTTTATTTGAT
Found at i:8857726 original size:17 final size:16
Alignment explanation
Indices: 8857671--8857727 Score: 50
Period size: 17 Copynumber: 3.8 Consensus size: 16
8857661 TAAAATTTAT
8857671 TTTAATATATTT-TTA
1 TTTAATATATTTGTTA
*
8857686 TTTGAT-T-TTTGTT-
1 TTTAATATATTTGTTA
* *
8857699 TTAAATGTATTTGATTA
1 TTTAATATATTTG-TTA
8857716 TTTAATATATTT
1 TTTAATATATTT
8857728 TAAAATTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
13 7 0.22
14 4 0.12
15 9 0.28
16 2 0.06
17 10 0.31
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (16 bp):
TTTAATATATTTGTTA
Found at i:8858795 original size:19 final size:19
Alignment explanation
Indices: 8858717--8858798 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 19
8858707 AAAAAATACA
*
8858717 AAAAAATATTTTAAAAAT-T
1 AAAAAA-ATTATAAAAATAT
* *
8858736 ACAAAAATTATTAAAA-AT
1 AAAAAAATTATAAAAATAT
* * ** *
8858754 AGAAAATTTATAAATTTAC
1 AAAAAAATTATAAAAATAT
8858773 AAAAAAATTATAAAAATAT
1 AAAAAAATTATAAAAATAT
8858792 AAAAAAA
1 AAAAAAA
8858799 ACTTAAATTT
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
18 20 0.43
19 27 0.57
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.29
Consensus pattern (19 bp):
AAAAAAATTATAAAAATAT
Found at i:8859166 original size:10 final size:10
Alignment explanation
Indices: 8859151--8859265 Score: 55
Period size: 10 Copynumber: 11.3 Consensus size: 10
8859141 AATTTTCATA
8859151 TTTTATAATT
1 TTTTATAATT
8859161 TTTTATAA--
1 TTTTATAATT
8859169 TTTTATAAGTT
1 TTTTATAA-TT
*
8859180 TTTCTATTTTCAATA
1 TTT-TA---T-AATT
*
8859195 TTTTGTAATT
1 TTTTATAATT
*
8859205 TTTAAT-ATT
1 TTTTATAATT
8859214 TTTTATAATT
1 TTTTATAATT
8859224 TTTTA-ATATGT
1 TTTTATA-AT-T
*
8859235 ATTTT-TTATT
1 -TTTTATAATT
*
8859245 TTTTGTAA--
1 TTTTATAATT
8859253 TTTTATAATT
1 TTTTATAATT
8859263 TTT
1 TTT
8859266 ATTTTTCTAT
Statistics
Matches: 80, Mismatches: 9, Indels: 32
0.66 0.07 0.26
Matches are distributed among these distances:
8 15 0.19
9 13 0.16
10 31 0.39
11 7 0.09
12 6 0.08
14 1 0.01
15 5 0.06
16 2 0.03
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (10 bp):
TTTTATAATT
Found at i:8859172 original size:9 final size:9
Alignment explanation
Indices: 8859107--8859267 Score: 69
Period size: 9 Copynumber: 18.7 Consensus size: 9
8859097 AATATTAAAC
8859107 TTTT-TAAT
1 TTTTATAAT
*
8859115 TTTTTTAAT
1 TTTTATAAT
8859124 TTTTAGTAAAT
1 TTTTA-T-AAT
* * *
8859135 CTTAAAAAT
1 TTTTATAAT
*
8859144 TTTCAT-A-
1 TTTTATAAT
8859151 TTTTATAATT
1 TTTTATAA-T
8859161 TTTTATAA-
1 TTTTATAAT
8859169 TTTTATAAGT
1 TTTTATAA-T
*
8859179 TTTTCT-A-
1 TTTTATAAT
*
8859186 TTTT-CAAT
1 TTTTATAAT
*
8859194 ATTTTGTAAT
1 -TTTTATAAT
*
8859204 TTTTAATATT
1 TTTT-ATAAT
8859214 TTTTATAAT
1 TTTTATAAT
8859223 TTTT-TAAT
1 TTTTATAAT
* *
8859231 ATGTAT--T
1 TTTTATAAT
8859238 TTTTAT--T
1 TTTTATAAT
*
8859245 TTTTGTAA-
1 TTTTATAAT
8859253 TTTTATAAT
1 TTTTATAAT
8859262 TTTTAT
1 TTTTAT
8859268 TTTTCTATTT
Statistics
Matches: 116, Mismatches: 20, Indels: 33
0.69 0.12 0.20
Matches are distributed among these distances:
7 21 0.18
8 27 0.23
9 38 0.33
10 24 0.21
11 6 0.05
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:8859248 original size:31 final size:32
Alignment explanation
Indices: 8859210--8859277 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 32
8859200 TAATTTTTAA
*
8859210 TATTTTTTATAATTTTTTAATATGTATTTTT-
1 TATTTTTTATAATTTTATAATATGTATTTTTC
* * *
8859241 TATTTTTTGTAATTTTATAATTTTTATTTTTC
1 TATTTTTTATAATTTTATAATATGTATTTTTC
8859273 TATTT
1 TATTT
8859278 CAATAGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 27 0.84
32 5 0.16
ACGTcount: A:0.24, C:0.01, G:0.03, T:0.72
Consensus pattern (32 bp):
TATTTTTTATAATTTTATAATATGTATTTTTC
Found at i:8859339 original size:27 final size:25
Alignment explanation
Indices: 8859244--8859366 Score: 83
Period size: 27 Copynumber: 4.8 Consensus size: 25
8859234 TATTTTTTAT
* * *
8859244 TTTTTGTAATTTTATAATTTT--TA
1 TTTTTCTATTTTTAAAATTTTAATA
* * *
8859267 TTTTTCTA-TTTCAATAGTTTTAATG
1 TTTTTCTATTTTTAA-AATTTTAATA
*
8859292 TTTTTCTGTATTTTTTAAATTTTAA-A
1 TTTTTC--TATTTTTAAAATTTTAATA
*
8859318 TTTTTTCTATTTCTTAATAATTATAATA
1 -TTTTTCTATTT-TTAA-AATTTTAATA
*
8859346 TTTTTATATTTTTAAAATTTT
1 TTTTTCTATTTTTAAAATTTT
8859367 TTTTAATAAT
Statistics
Matches: 77, Mismatches: 13, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
22 4 0.05
23 12 0.16
25 17 0.22
26 7 0.09
27 32 0.42
28 5 0.06
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (25 bp):
TTTTTCTATTTTTAAAATTTTAATA
Found at i:8860956 original size:9 final size:9
Alignment explanation
Indices: 8860942--8860967 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8860932 TCGATCTGAG
8860942 TTATTTGAA
1 TTATTTGAA
8860951 TTATTTGAA
1 TTATTTGAA
8860960 TTATTTGA
1 TTATTTGA
8860968 GTAAACTCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58
Consensus pattern (9 bp):
TTATTTGAA
Found at i:8869696 original size:17 final size:17
Alignment explanation
Indices: 8869674--8869708 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8869664 CATAAATTTT
8869674 CAGAATTTTAGGTTTGG
1 CAGAATTTTAGGTTTGG
8869691 CAGAATTTTAGGTTTGG
1 CAGAATTTTAGGTTTGG
8869708 C
1 C
8869709 CAATCAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.09, G:0.29, T:0.40
Consensus pattern (17 bp):
CAGAATTTTAGGTTTGG
Found at i:8870752 original size:28 final size:28
Alignment explanation
Indices: 8870721--8870792 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
8870711 TCGATATTTT
*
8870721 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
8870749 GCACGCTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
8870777 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
8870793 ATTTGATTGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:8876505 original size:19 final size:21
Alignment explanation
Indices: 8876477--8876519 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
8876467 TCGACTAGTG
*
8876477 ATTTAGTGTTT-A-ATTAATT
1 ATTTAATGTTTAATATTAATT
8876496 ATTTAATGTTTAATATTAATT
1 ATTTAATGTTTAATATTAATT
8876517 ATT
1 ATT
8876520 ACAGTTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.48
20 1 0.05
21 10 0.48
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTTAATGTTTAATATTAATT
Found at i:8877632 original size:25 final size:25
Alignment explanation
Indices: 8877604--8877652 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
8877594 TGTGCCTAGC
*
8877604 AGGCTTAGTGCTGGTGTATTGATTT
1 AGGCTTAGTGCCGGTGTATTGATTT
8877629 AGGCTTAGTGCCGGTGTATTGATT
1 AGGCTTAGTGCCGGTGTATTGATT
8877653 CAAGCTTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.16, C:0.10, G:0.33, T:0.41
Consensus pattern (25 bp):
AGGCTTAGTGCCGGTGTATTGATTT
Found at i:8877659 original size:25 final size:25
Alignment explanation
Indices: 8877606--8877665 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
8877596 TGCCTAGCAG
* * *
8877606 GCTTAGTGCTGGTGTATTGATTTAG
1 GCTTAGTGCCGGTGTATTGATTCAA
8877631 GCTTAGTGCCGGTGTATTGATTCAA
1 GCTTAGTGCCGGTGTATTGATTCAA
*
8877656 GCTTTGTGCC
1 GCTTAGTGCC
8877666 TAGCAAGCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.15, C:0.15, G:0.30, T:0.40
Consensus pattern (25 bp):
GCTTAGTGCCGGTGTATTGATTCAA
Found at i:8877693 original size:41 final size:41
Alignment explanation
Indices: 8877631--8877732 Score: 123
Period size: 41 Copynumber: 2.5 Consensus size: 41
8877621 ATTGATTTAG
* * *
8877631 GCTTAGTGCCGGTGTATTGATTCAAGCTTTGTGCCTAGCAA
1 GCTTCGTGCCGGTGTATTGATTCAAGCTCTGTACCTAGCAA
* * * *
8877672 GCTTCGTGCCAGTGTATTGATTTAGGCTCTGTACCTAGCAT
1 GCTTCGTGCCGGTGTATTGATTCAAGCTCTGTACCTAGCAA
* *
8877713 GCTTCATGCTGGTGTATTGA
1 GCTTCGTGCCGGTGTATTGA
8877733 ATAAGGTAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.18, C:0.20, G:0.26, T:0.36
Consensus pattern (41 bp):
GCTTCGTGCCGGTGTATTGATTCAAGCTCTGTACCTAGCAA
Found at i:8886180 original size:19 final size:19
Alignment explanation
Indices: 8886156--8886235 Score: 137
Period size: 19 Copynumber: 4.3 Consensus size: 19
8886146 AATCTTTAAG
8886156 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
8886175 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
8886194 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8886213 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8886230 GATATG
1 GATATG
8886236 ATATGATATG
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
17 17 0.30
19 40 0.70
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8887428 original size:15 final size:15
Alignment explanation
Indices: 8887408--8887443 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
8887398 GAACTATTCG
8887408 ATGTCTCTTTTAATA
1 ATGTCTCTTTTAATA
8887423 ATGTCTCTTTTAATA
1 ATGTCTCTTTTAATA
*
8887438 CTGTCT
1 ATGTCT
8887444 TCATTTGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.17, G:0.08, T:0.53
Consensus pattern (15 bp):
ATGTCTCTTTTAATA
Found at i:8892903 original size:20 final size:21
Alignment explanation
Indices: 8892867--8892908 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
8892857 CAAAATAAAA
*
8892867 ATTAATATAAACATAAT-AAT
1 ATTAATATAAAAATAATCAAT
8892887 ATTAATA-AAAAATTAATCAAT
1 ATTAATATAAAAA-TAATCAAT
8892908 A
1 A
8892909 AAAAAACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 4 0.21
20 11 0.58
21 4 0.21
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (21 bp):
ATTAATATAAAAATAATCAAT
Found at i:8893550 original size:16 final size:17
Alignment explanation
Indices: 8893512--8893552 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
8893502 AAGGTTTGTT
8893512 GAACTCAAATTTTCTCC
1 GAACTCAAATTTTCTCC
*
8893529 G-TCTCAAATTTTCT-C
1 GAACTCAAATTTTCTCC
8893544 GAACTCAAA
1 GAACTCAAA
8893553 CTCTAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 2 0.10
16 18 0.86
17 1 0.05
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (17 bp):
GAACTCAAATTTTCTCC
Found at i:8895831 original size:15 final size:16
Alignment explanation
Indices: 8895811--8895840 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8895801 CAATAATATT
8895811 TTTAATATT-TAAATG
1 TTTAATATTATAAATG
8895826 TTTAATATTATAAAT
1 TTTAATATTATAAAT
8895841 TTAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTAATATTATAAATG
Found at i:8900491 original size:19 final size:20
Alignment explanation
Indices: 8900467--8900504 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
8900457 GGTACCACCA
8900467 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
8900486 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
8900505 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:8900800 original size:46 final size:46
Alignment explanation
Indices: 8900733--8900854 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
8900723 CGCCCCTAAG
* * *
8900733 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* *
8900779 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
8900825 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
8900855 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:8900873 original size:46 final size:45
Alignment explanation
Indices: 8900731--8900873 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
8900721 CCCGCCCCTA
* ** *
8900731 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
* ** **
8900776 AAATGAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
*
8900822 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTC-ACCATCCT
8900869 AGTGA
1 AGTGA
8900874 CATGTCACTT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
46 78 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCCT
Found at i:8902427 original size:40 final size:40
Alignment explanation
Indices: 8902372--8902575 Score: 347
Period size: 40 Copynumber: 5.1 Consensus size: 40
8902362 TGGATGATAA
8902372 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
8902412 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
8902452 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
8902492 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
8902532 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
8902572 CCGG
1 CCGG
8902576 TTAAATCCCA
Statistics
Matches: 157, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.01
40 155 0.99
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:8904600 original size:18 final size:19
Alignment explanation
Indices: 8904573--8904611 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8904563 CATTTGAAAC
8904573 AAAATAG-AAAATTTTGGA
1 AAAATAGAAAAATTTTGGA
*
8904591 AAAATTGAAAAATTTTGGA
1 AAAATAGAAAAATTTTGGA
8904610 AA
1 AA
8904612 CAGGGGTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.28
Consensus pattern (19 bp):
AAAATAGAAAAATTTTGGA
Found at i:8906011 original size:20 final size:20
Alignment explanation
Indices: 8905973--8906011 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8905963 TGAATTTTAG
*
8905973 TGAAAATTGTCATAACATGT
1 TGAAAATTGTAATAACATGT
* *
8905993 TGAAAATTTTAATACCATG
1 TGAAAATTGTAATAACATG
8906012 AATTGGGTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (20 bp):
TGAAAATTGTAATAACATGT
Found at i:8909620 original size:7 final size:7
Alignment explanation
Indices: 8909608--8909632 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8909598 TTAAAAACTT
8909608 AATTAAC
1 AATTAAC
8909615 AATTAAC
1 AATTAAC
8909622 AATTAAC
1 AATTAAC
8909629 AATT
1 AATT
8909633 CAATGTCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (7 bp):
AATTAAC
Found at i:8911223 original size:14 final size:14
Alignment explanation
Indices: 8911204--8911235 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8911194 ATGAAAGAAG
*
8911204 TTTTAAAATATAAA
1 TTTTAAAACATAAA
8911218 TTTTAAAACATAAA
1 TTTTAAAACATAAA
8911232 TTTT
1 TTTT
8911236 TGGAAGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
TTTTAAAACATAAA
Found at i:8921498 original size:98 final size:98
Alignment explanation
Indices: 8921391--8921594 Score: 223
Period size: 98 Copynumber: 2.1 Consensus size: 98
8921381 GTGCACATTC
* * ** * * * *
8921391 CCTTTTCAAGTGGTACACACGAAGTGTACATACCCTATCTAATTTGTATACACAAAGTGCACATA
1 CCTTTTCAAGTCGTACACACAAAGTACACATAACCTATCCAA-GTGTACACACAAAGTGCACATA
* * *
8921456 ACCTTTTTAAGT-GTACATA-AATAGTGTACCTTT
65 ACCTTTTCAAGTGGTACACACAA-AGTATACCTTT
* * * *
8921489 CCTTTTCAAGTCGTATACACAAAGTACACCTAACCTTTCCAAGTGTGCACACAAAGTGCACATAA
1 CCTTTTCAAGTCGTACACACAAAGTACACATAACCTATCCAAGTGTACACACAAAGTGCACATAA
* *
8921554 CCTTTTCATGTGGTATACACAAAGTATACCTTT
66 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
8921587 CCTTTTCA
1 CCTTTTCA
8921595 CATTCGATAG
Statistics
Matches: 87, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
97 29 0.33
98 56 0.64
99 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (98 bp):
CCTTTTCAAGTCGTACACACAAAGTACACATAACCTATCCAAGTGTACACACAAAGTGCACATAA
CCTTTTCAAGTGGTACACACAAAGTATACCTTT
Found at i:8921532 original size:33 final size:32
Alignment explanation
Indices: 8921435--8921594 Score: 124
Period size: 32 Copynumber: 4.9 Consensus size: 32
8921425 CTATCTAATT
* * *
8921435 TGTATACACAAAGTGCACATAACCTTTTTAAG
1 TGTATACACAAAGTACACCTAACCTTTTCAAG
* * ** **
8921467 TGTACATA-AATAGTGTACCTTTCCTTTTCAAG
1 TGTATACACAA-AGTACACCTAACCTTTTCAAG
*
8921499 TCGTATACACAAAGTACACCTAACCTTTCCAAG
1 T-GTATACACAAAGTACACCTAACCTTTTCAAG
** * * *
8921532 TGTGCACACAAAGTGCACATAACCTTTTCATG
1 TGTATACACAAAGTACACCTAACCTTTTCAAG
* **
8921564 TGGTATACACAAAGTATACCTTTCCTTTTCA
1 T-GTATACACAAAGTACACCTAACCTTTTCA
8921595 CATTCGATAG
Statistics
Matches: 97, Mismatches: 27, Indels: 7
0.74 0.21 0.05
Matches are distributed among these distances:
31 2 0.02
32 49 0.51
33 44 0.45
34 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (32 bp):
TGTATACACAAAGTACACCTAACCTTTTCAAG
Found at i:8921533 original size:65 final size:65
Alignment explanation
Indices: 8921391--8921584 Score: 167
Period size: 65 Copynumber: 3.0 Consensus size: 65
8921381 GTGCACATTC
* * * * * * * * *
8921391 CCTTTTCAAGTGGTACACACGAAGTGTACAT-ACCCTATCTAATTTGTATACACAAAGTGCACAT
1 CCTTTCCAAGT-GTACACACAAAGTGCACATAACCTTTTC-AAGTCGTATACACAAAGTACACCT
8921455 AA
64 AA
** * * * **
8921457 CCTTTTTAAGTGTACATA-AATAGTGTACCTTTCCTTTTCAAGTCGTATACACAAAGTACACCTA
1 CCTTTCCAAGTGTACACACAA-AGTGCACATAACCTTTTCAAGTCGTATACACAAAGTACACCTA
8921521 A
65 A
* * * *
8921522 CCTTTCCAAGTGTGCACACAAAGTGCACATAACCTTTTCATGTGGTATACACAAAGTATACCT
1 CCTTTCCAAGTGTACACACAAAGTGCACATAACCTTTTCAAGTCGTATACACAAAGTACACCT
8921585 TTCCTTTTCA
Statistics
Matches: 103, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
64 1 0.01
65 85 0.83
66 17 0.17
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (65 bp):
CCTTTCCAAGTGTACACACAAAGTGCACATAACCTTTTCAAGTCGTATACACAAAGTACACCTAA
Found at i:8921555 original size:32 final size:32
Alignment explanation
Indices: 8921358--8921578 Score: 149
Period size: 33 Copynumber: 6.8 Consensus size: 32
8921348 ATGGACCTTT
* * * **
8921358 CCTTTTCTAGTTGTACACTCAAGGTGCACATTC
1 CCTTTTCAAG-TGTACACACAAAGTGCACATAA
* *
8921391 CCTTTTCAAGTGGTACACACGAAGTGTACAT-A
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* * * *
8921423 CCCTATCTAATTTGTATACACAAAGTGCACATAA
1 CCTTTTC-AA-GTGTACACACAAAGTGCACATAA
* * * * **
8921457 CCTTTTTAAGTGTACATA-AATAGTGTACCTTT
1 CCTTTTCAAGTGTACACACAA-AGTGCACATAA
* * *
8921489 CCTTTTCAAGTCGTATACACAAAGTACACCTAA
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* *
8921522 CCTTTCCAAGTGTGCACACAAAGTGCACATAA
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
* *
8921554 CCTTTTCATGTGGTATACACAAAGT
1 CCTTTTCAAGT-GTACACACAAAGT
8921579 ATACCTTTCC
Statistics
Matches: 142, Mismatches: 38, Indels: 16
0.72 0.19 0.08
Matches are distributed among these distances:
31 2 0.01
32 55 0.39
33 77 0.54
34 8 0.06
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTGCACATAA
Found at i:8921632 original size:29 final size:29
Alignment explanation
Indices: 8921587--8921655 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 29
8921577 GTATACCTTT
*
8921587 CCTTTTCACATTCGATAGCCAAAGTTATC
1 CCTTTTCACATTCGATAGCCAAAGCTATC
* * *
8921616 CCTTTTCGCATTTGATAGCCGAAGCTATC
1 CCTTTTCACATTCGATAGCCAAAGCTATC
*
8921645 CTTTTTCACAT
1 CCTTTTCACAT
8921656 GGTACACACA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.38
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCAAAGCTATC
Found at i:8928486 original size:32 final size:32
Alignment explanation
Indices: 8928362--8928582 Score: 163
Period size: 33 Copynumber: 6.8 Consensus size: 32
8928352 ATGGACCTTT
* * * **
8928362 CCTTTTCTAGTTGTACACTCAAGGTGCACATTC
1 CCTTTTCAAG-TGTACACACAAAGTGCACATAA
* * * *
8928395 CCTTTTCACGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* * *
8928428 CCTATCCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAA-GTGTACACACAAAGTGCACATAA
* * * * **
8928461 CCTTTTTAAGTGTACACATATAGTGCACCTTT
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
* ** *
8928493 CCTTTTCAAGTAGTATACACAAAGTATACCTAA
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* *
8928526 CCTTTTCAAATGTGCACACAAAGTGCACATAA
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
* *
8928558 CCTTTTCATGTGGTATACACAAAGT
1 CCTTTTCAAGT-GTACACACAAAGT
8928583 ATACCTTTCC
Statistics
Matches: 143, Mismatches: 41, Indels: 8
0.74 0.21 0.04
Matches are distributed among these distances:
32 53 0.37
33 89 0.62
34 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTGCACATAA
Found at i:8928497 original size:98 final size:98
Alignment explanation
Indices: 8928362--8928599 Score: 244
Period size: 98 Copynumber: 2.4 Consensus size: 98
8928352 ATGGACCTTT
* * * * * * * * *
8928362 CCTTTTCTAGTTGTACACTCAAGGTGCACATTCCCTTTTCACGTGGTACACACGAAGTGTACATA
1 CCTTTTCAAGTGGTACACACAAAGTGCACCTTTCCTTTTCACGTAGTACACACAAAGTATACATA
* *
8928427 CCCTATCCAATTTGTACACACAAAGTGCACATAA
66 ACCTATCCAA-ATGTACACACAAAGTGCACATAA
* * * * * *
8928461 CCTTTTTAAGT-GTACACATATAGTGCACCTTTCCTTTTCAAGTAGTATACACAAAGTATACCTA
1 CCTTTTCAAGTGGTACACACAAAGTGCACCTTTCCTTTTCACGTAGTACACACAAAGTATACATA
* * *
8928525 ACCTTTTCAAATGTGCACACAAAGTGCACATAA
66 ACCTATCCAAATGTACACACAAAGTGCACATAA
* * **
8928558 CCTTTTCATGTGGTATACACAAAGTATACCTTTCCTTTTCAC
1 CCTTTTCAAGTGGTACACACAAAGTGCACCTTTCCTTTTCAC
8928600 ATTCGATAGC
Statistics
Matches: 111, Mismatches: 27, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
97 30 0.27
98 72 0.65
99 9 0.08
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (98 bp):
CCTTTTCAAGTGGTACACACAAAGTGCACCTTTCCTTTTCACGTAGTACACACAAAGTATACATA
ACCTATCCAAATGTACACACAAAGTGCACATAA
Found at i:8928515 original size:65 final size:65
Alignment explanation
Indices: 8928407--8928583 Score: 165
Period size: 65 Copynumber: 2.7 Consensus size: 65
8928397 TTTTCACGTG
* * * * * * * * * * *
8928407 GTACACACGAAGTGTACATACCCTATCCAATTTGTACACACAAAGTGCACATAACCTTTTTAAGT
1 GTACACACAAAGTGCACATAACCTTTTCAAGTAGTATACACAAAGTACACATAACCTTTTCAAAT
* * * ** * *
8928472 GTACACATATAGTGCACCTTTCCTTTTCAAGTAGTATACACAAAGTATACCTAACCTTTTCAAAT
1 GTACACACAAAGTGCACATAACCTTTTCAAGTAGTATACACAAAGTACACATAACCTTTTCAAAT
* * *
8928537 GTGCACACAAAGTGCACATAACCTTTTCATGTGGTATACACAAAGTA
1 GTACACACAAAGTGCACATAACCTTTTCAAGTAGTATACACAAAGTA
8928584 TACCTTTCCT
Statistics
Matches: 87, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
65 87 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (65 bp):
GTACACACAAAGTGCACATAACCTTTTCAAGTAGTATACACAAAGTACACATAACCTTTTCAAAT
Found at i:8928531 original size:33 final size:32
Alignment explanation
Indices: 8928439--8928598 Score: 113
Period size: 32 Copynumber: 4.9 Consensus size: 32
8928429 CTATCCAATT
* ** * *
8928439 TGTACACACAAAGTGCACATAACCTTTTTAAG
1 TGTATACACAAAGTATACCTAACCTTTTCAAG
* * * ** **
8928471 TGTACACATATAGTGCACCTTTCCTTTTCAAG
1 TGTATACACAAAGTATACCTAACCTTTTCAAG
*
8928503 TAGTATACACAAAGTATACCTAACCTTTTCAAA
1 T-GTATACACAAAGTATACCTAACCTTTTCAAG
** ** * *
8928536 TGTGCACACAAAGTGCACATAACCTTTTCATG
1 TGTATACACAAAGTATACCTAACCTTTTCAAG
**
8928568 TGGTATACACAAAGTATACCTTTCCTTTTCA
1 T-GTATACACAAAGTATACCTAACCTTTTCA
8928599 CATTCGATAG
Statistics
Matches: 98, Mismatches: 28, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
32 52 0.53
33 46 0.47
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (32 bp):
TGTATACACAAAGTATACCTAACCTTTTCAAG
Found at i:8929702 original size:18 final size:18
Alignment explanation
Indices: 8929681--8929717 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8929671 ACAAAGACAG
*
8929681 GGGTAGAGATGAAGATGA
1 GGGTAGAGATGAAAATGA
*
8929699 GGGTCGAGATGAAAATGA
1 GGGTAGAGATGAAAATGA
8929717 G
1 G
8929718 TACAAGGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.43, T:0.16
Consensus pattern (18 bp):
GGGTAGAGATGAAAATGA
Found at i:8948179 original size:13 final size:13
Alignment explanation
Indices: 8948161--8948194 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
8948151 ACCTCCTTGG
8948161 ATTAAATTATTAA
1 ATTAAATTATTAA
8948174 ATTAAAATTATTAA
1 ATT-AAATTATTAA
8948188 A-TAAATT
1 ATTAAATT
8948195 GAAATTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 4 0.20
14 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTAAATTATTAA
Found at i:8948256 original size:23 final size:23
Alignment explanation
Indices: 8948230--8948274 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
8948220 GAGTCAGTCA
8948230 AAAAAAGGTATGTTAATTAATCT
1 AAAAAAGGTATGTTAATTAATCT
*
8948253 AAAAAAGGTATGTTACTTAATC
1 AAAAAAGGTATGTTAATTAATC
8948275 AACGATCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.33
Consensus pattern (23 bp):
AAAAAAGGTATGTTAATTAATCT
Found at i:8948830 original size:40 final size:42
Alignment explanation
Indices: 8948734--8948873 Score: 130
Period size: 40 Copynumber: 3.4 Consensus size: 42
8948724 TAAAATGCTC
* * *
8948734 TCGCACATTTAGTGCCATCTCAAATAGCCAAAGCTA-CCTCAGTA
1 TCGCACACTTAGTG-C--CTCATATAGCCAAAGCTATTCTCAGTA
*
8948778 TCGCACACTTAGTGCCTCATATAGCCAAAGCTATTC-CA-TT
1 TCGCACACTTAGTGCCTCATATAGCCAAAGCTATTCTCAGTA
* * *
8948818 TCGCACACTTAGTG-CTATATATAGCCAAAGCTATT-T-TGAA
1 TCGCACACTTAGTGCCT-CATATAGCCAAAGCTATTCTCAGTA
*
8948858 TTGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
8948874 AAATGCAGTT
Statistics
Matches: 82, Mismatches: 9, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
39 2 0.02
40 45 0.55
41 20 0.24
42 1 0.01
43 1 0.01
44 13 0.16
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (42 bp):
TCGCACACTTAGTGCCTCATATAGCCAAAGCTATTCTCAGTA
Found at i:8952566 original size:106 final size:107
Alignment explanation
Indices: 8952379--8952595 Score: 276
Period size: 106 Copynumber: 2.0 Consensus size: 107
8952369 AGAAATTTTT
* *
8952379 CTTCGATGTTGACACATATCAAGCATTGAAATCCATTTCTCAAGACATAACTTATCAAGTCTAAA
1 CTTCGATGTTGACACATATCAAGCATTGAAATCCATGTCTCAAAACATAACTTATCAAGTCTAAA
** *
8952444 GACTTAATCTTGAGACAGACCTC-ATTGTTTCGCTATTTTAA
66 GACTTAATCTCAAGACAAACCTCTATTGTTTCGCTATTTTAA
* ** * * **
8952485 CTTCGATGTTGGCATGTCTCAAGCATTGAAATCCATGTCTCAAAACATAACTTCTCAAGTCTGGA
1 CTTCGATGTTGACACATATCAAGCATTGAAATCCATGTCTCAAAACATAACTTATCAAGTCTAAA
* * *
8952550 TA-TTGAGTCTCAAGACAAACCTCTCTTGTTTCGCTATTTTAA
66 GACTT-AATCTCAAGACAAACCTCTATTGTTTCGCTATTTTAA
8952592 CTTC
1 CTTC
8952596 ACTGTTTGGA
Statistics
Matches: 94, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
105 2 0.02
106 71 0.76
107 21 0.22
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (107 bp):
CTTCGATGTTGACACATATCAAGCATTGAAATCCATGTCTCAAAACATAACTTATCAAGTCTAAA
GACTTAATCTCAAGACAAACCTCTATTGTTTCGCTATTTTAA
Found at i:8955979 original size:215 final size:215
Alignment explanation
Indices: 8955597--8956026 Score: 691
Period size: 215 Copynumber: 2.0 Consensus size: 215
8955587 GTAGTTATTT
* *
8955597 CCTTTGCTTTGTAGATCATCCGAAAGCTTGACTAGTTGGAATCTCATCAAAGAATAATCACACTA
1 CCTTTGCTTTGTAGATCATCCAAAAGCTTGACTAGTTGGAATCTCATCAAAGAACAATCACACTA
* *
8955662 TCCATCCGTCATTTTGGTAGTTTTTGGTTAGTTTGGCAAATGGTTATAAATGGCATGTATATGGC
66 TCCATCCGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTATAGGGC
* * *
8955727 TAAAACATTACCTTGGTCCTTTGGTTGTTTTGAGTTTGTGCTCAGCCTATTTGTGGTTAAATGCC
131 TAAAACATTACCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATGCC
8955792 CTAGTTGTTGTAGGTTTGTA
196 CTAGTTGTTGTAGGTTTGTA
* * * * * * *
8955812 CCTTTGTTTTTTAGATCATCCAAAAGCTTGATTGGTTGGAATCTTC-TCGAAGCACAATTACACT
1 CCTTTGCTTTGTAGATCATCCAAAAGCTTGACTAGTTGGAATC-TCATCAAAGAACAATCACACT
*
8955876 ATCCATCTGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTATAGGG
65 ATCCATCCGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTATAGGG
* *
8955941 CTACAACATTATCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATGC
130 CTAAAACATTACCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATGC
8956006 CCTAGTTGTTGTAGGTTTGTA
195 CCTAGTTGTTGTAGGTTTGTA
8956027 AATGATTATA
Statistics
Matches: 197, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
215 195 0.99
216 2 0.01
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.40
Consensus pattern (215 bp):
CCTTTGCTTTGTAGATCATCCAAAAGCTTGACTAGTTGGAATCTCATCAAAGAACAATCACACTA
TCCATCCGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTATAGGGC
TAAAACATTACCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATGCC
CTAGTTGTTGTAGGTTTGTA
Found at i:8977839 original size:4 final size:5
Alignment explanation
Indices: 8977764--8977836 Score: 67
Period size: 5 Copynumber: 13.6 Consensus size: 5
8977754 AAGCCATCCC
*
8977764 TTTTA TTTTA TTTTA TTTTA TTATTA TTTGTTA TATTA -TTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TT-TTA -TT-TTA TTTTA TTTTA TTTTA
*
8977811 CTAATTCA TTTTA TTTTA TTTTA TTT
1 -T--TTTA TTTTA TTTTA TTTTA TTT
8977837 ATTATTCTTA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
4 3 0.05
5 40 0.70
6 5 0.09
7 6 0.11
8 3 0.05
ACGTcount: A:0.23, C:0.03, G:0.01, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:8977962 original size:3 final size:3
Alignment explanation
Indices: 8977954--8977985 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8977944 ATCATTGAGT
8977954 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8977986 TTCTTTTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8978546 original size:26 final size:27
Alignment explanation
Indices: 8978517--8978576 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 27
8978507 CATGATAGAC
8978517 TATGTTTCAGAAATTAAAATTTTT-AG
1 TATGTTTCAGAAATTAAAATTTTTAAG
8978543 TATGTTTCAGAAATTAAAATTTTTAAG
1 TATGTTTCAGAAATTAAAATTTTTAAG
8978570 T-TGTTTC
1 TATGTTTC
8978577 CCTGAATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 30 0.91
27 3 0.09
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.48
Consensus pattern (27 bp):
TATGTTTCAGAAATTAAAATTTTTAAG
Found at i:8982867 original size:26 final size:26
Alignment explanation
Indices: 8982841--8982899 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
8982831 ATAAACTAAT
*
8982841 TTAATATAAAATCAAA-AAATTAAAA
1 TTAAAATAAAATCAAATAAATTAAAA
* *
8982866 TTAAAATTAAATTAAATAAATT-AAA
1 TTAAAATAAAATCAAATAAATTAAAA
8982891 TTAAAATAA
1 TTAAAATAA
8982900 GATTTTCCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 24 0.83
26 5 0.17
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (26 bp):
TTAAAATAAAATCAAATAAATTAAAA
Found at i:8982877 original size:25 final size:25
Alignment explanation
Indices: 8982831--8982897 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
8982821 TAAATTTAGC
* * * *
8982831 ATAAACTAATTTAATATAAAATCAA
1 ATAAATTAAATTAAAATTAAATCAA
*
8982856 A-AAATTAAAATTAAAATTAAATTAA
1 ATAAATT-AAATTAAAATTAAATCAA
8982881 ATAAATTAAATTAAAAT
1 ATAAATTAAATTAAAAT
8982898 AAGATTTTCC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 4 0.11
25 26 0.74
26 5 0.14
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (25 bp):
ATAAATTAAATTAAAATTAAATCAA
Found at i:8982879 original size:5 final size:5
Alignment explanation
Indices: 8982857--8982895 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
8982847 TAAAATCAAA
8982857 AAATT AAAATT AAAATT AAATT AAA-T AAATT AAATT AAA
1 AAATT -AAATT -AAATT AAATT AAATT AAATT AAATT AAA
8982896 ATAAGATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 4 0.12
5 17 0.53
6 11 0.34
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (5 bp):
AAATT
Found at i:8982886 original size:14 final size:14
Alignment explanation
Indices: 8982869--8982895 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8982859 ATTAAAATTA
8982869 AAATTAAATTAAAT
1 AAATTAAATTAAAT
8982883 AAATTAAATTAAA
1 AAATTAAATTAAA
8982896 ATAAGATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATTAAATTAAAT
Done.