Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 300 of 362
Found at i:100767192 original size:3 final size:3
Alignment explanation
Indices: 100767186--100767213 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
100767176 ATAGCCGAAC
100767186 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
100767214 TTATATGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:100768532 original size:24 final size:23
Alignment explanation
Indices: 100768486--100768539 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
100768476 AACCCTAATA
*
100768486 TAATATTAATCTAACATCAATCT
1 TAATATTAATATAACATCAATCT
* **
100768509 CTAATATTAATATAATATTTATCT
1 -TAATATTAATATAACATCAATCT
100768533 TAATATT
1 TAATATT
100768540 TTCGTCGGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (23 bp):
TAATATTAATATAACATCAATCT
Found at i:100773886 original size:30 final size:30
Alignment explanation
Indices: 100773850--100773964 Score: 144
Period size: 30 Copynumber: 3.8 Consensus size: 30
100773840 ACTTTTCTCA
*
100773850 ACTAGCCACACCTT-TTCCACCACCAACTCC
1 ACTAGCCACA-CTTGCTCCACCACCAACTCC
*
100773880 ACTAGCCACACCTT-CTCCACCACCAAATCC
1 ACTAGCCACA-CTTGCTCCACCACCAACTCC
** *
100773910 ACTAGCCACACTTGCTCCATTACCTACTCC
1 ACTAGCCACACTTGCTCCACCACCAACTCC
*
100773940 ACTAACCACACTTGCTCCACCACCA
1 ACTAGCCACACTTGCTCCACCACCA
100773965 CTTGTACCTA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 3 0.04
30 71 0.96
ACGTcount: A:0.28, C:0.48, G:0.04, T:0.20
Consensus pattern (30 bp):
ACTAGCCACACTTGCTCCACCACCAACTCC
Found at i:100774520 original size:23 final size:24
Alignment explanation
Indices: 100774486--100774536 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
100774476 ATTCTTTTAA
* *
100774486 TATATTAGGTATATTTA-AAATTT
1 TATATTACGTATATATATAAATTT
*
100774509 TATATTACGTATATATATATATTT
1 TATATTACGTATATATATAAATTT
100774533 TATA
1 TATA
100774537 CTATTTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (24 bp):
TATATTACGTATATATATAAATTT
Found at i:100774550 original size:27 final size:27
Alignment explanation
Indices: 100774520--100774649 Score: 92
Period size: 25 Copynumber: 5.0 Consensus size: 27
100774510 ATATTACGTA
*
100774520 TATATATATATTTTATACTATTTTA-T
1 TATATATATATTTTATACTATATTATT
* * *
100774546 T-TATATATCTTTAATATTATATTATT
1 TATATATATATTTTATACTATATTATT
* *
100774572 TATATATATATTTTTCTAC-ATGTTATCT
1 TATATATATA-TTTTATACTATATTAT-T
* * *
100774600 TATGTATATATCTTA-ACTATATTATG
1 TATATATATATTTTATACTATATTATT
* * *
100774626 TATGTAT-T-TTTAACACTATATTAT
1 TATATATATATTTTATACTATATTAT
100774650 GTACATATTT
Statistics
Matches: 82, Mismatches: 16, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
24 3 0.04
25 30 0.37
26 12 0.15
27 22 0.27
28 15 0.18
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (27 bp):
TATATATATATTTTATACTATATTATT
Found at i:100774647 original size:25 final size:25
Alignment explanation
Indices: 100774599--100774684 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
100774589 ACATGTTATC
*
100774599 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTTTTAACACTATA
*
100774621 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAACACTATA
* *
100774646 TTATGTACATATTTTTAATA-T-TA
1 TTATGTATATATTTTTAACACTATA
* *
100774669 TCATGTATTTATTTTT
1 TTATGTATATATTTTT
100774685 TATATATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 10 0.19
23 18 0.34
24 2 0.04
25 23 0.43
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAACACTATA
Found at i:100774681 original size:23 final size:24
Alignment explanation
Indices: 100774601--100774691 Score: 73
Period size: 23 Copynumber: 3.9 Consensus size: 24
100774591 ATGTTATCTT
*
100774601 ATGTATATA-TCTTAACTATAT-T-
1 ATGTATATATTTTTAA-TATATATC
* * *
100774623 ATGTATGTATTTTTAACACTATATT
1 ATGTATATATTTTTAATA-TATATC
*
100774648 ATGTACATATTTTTAATAT-TATC
1 ATGTATATATTTTTAATATATATC
* *
100774671 ATGTATTTATTTTTTATATAT
1 ATGTATATATTTTTAATATAT
100774692 GTACATATTG
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
22 9 0.17
23 27 0.50
24 3 0.06
25 15 0.28
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (24 bp):
ATGTATATATTTTTAATATATATC
Found at i:100774837 original size:16 final size:15
Alignment explanation
Indices: 100774813--100774860 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
100774803 TAATTATTAT
*
100774813 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
100774829 TATTTTAATATTTTA
1 TATTTTAATATTTTA
100774844 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
100774860 T
1 T
100774861 TATTCCCATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:100774848 original size:7 final size:8
Alignment explanation
Indices: 100774813--100774864 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
100774803 TAATTATTAT
*
100774813 TATTCTAA
1 TATTTTAA
*
100774821 TATTTTGA
1 TATTTTAA
100774829 TATTTTAA
1 TATTTTAA
100774837 TATTTT-A
1 TATTTTAA
100774844 TATTTTATA
1 TATTTTA-A
*
100774853 TATTTTAT
1 TATTTTAA
100774861 TATT
1 TATT
100774865 CCCATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:100779255 original size:16 final size:15
Alignment explanation
Indices: 100779215--100779256 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
100779205 ATCAATCTAA
100779215 AATATTATTTATATT
1 AATATTATTTATATT
100779230 AATATATATTTAATAGTT
1 AATAT-TATTT-ATA-TT
100779248 AA-ATTATTT
1 AATATTATTT
100779257 TTTATTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 5 0.21
16 10 0.42
17 5 0.21
18 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
AATATTATTTATATT
Found at i:100786835 original size:17 final size:17
Alignment explanation
Indices: 100786813--100786846 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
100786803 AAAGGCAGTG
100786813 AACTTAATTAATTAAGA
1 AACTTAATTAATTAAGA
100786830 AACTTAATTAATTAAGA
1 AACTTAATTAATTAAGA
100786847 CCAAAAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (17 bp):
AACTTAATTAATTAAGA
Found at i:100787633 original size:18 final size:18
Alignment explanation
Indices: 100787610--100787658 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
100787600 TTATAAAATA
100787610 ATATTATATTAATTATAT
1 ATATTATATTAATTATAT
*
100787628 ATATTAAATAATAATTATAT
1 ATATT--ATATTAATTATAT
100787648 ATATTTATATT
1 ATA-TTATATT
100787659 TATATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 5 0.19
19 4 0.15
20 15 0.58
21 2 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATATTATATTAATTATAT
Found at i:100788443 original size:6 final size:6
Alignment explanation
Indices: 100788426--100788457 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
100788416 ACACTTCTTC
100788426 TCCCCTT TCCCCT TCCCCT TCCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT T
100788458 TTGAAATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (6 bp):
TCCCCT
Found at i:100789741 original size:17 final size:18
Alignment explanation
Indices: 100789708--100789744 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
100789698 TGTTTCCTTT
*
100789708 GAGGTCCATGATAATTGG
1 GAGGTCCAAGATAATTGG
100789726 GAGGTCCAAG-TAATTGG
1 GAGGTCCAAGATAATTGG
100789743 GA
1 GA
100789745 ATTCCATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.30, C:0.11, G:0.35, T:0.24
Consensus pattern (18 bp):
GAGGTCCAAGATAATTGG
Found at i:100795665 original size:23 final size:24
Alignment explanation
Indices: 100795623--100795667 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
100795613 TTGAGTTTTG
*
100795623 AATTTTGAAAAAATAGAGAAATTA
1 AATTTTGAAAAAAAAGAGAAATTA
*
100795647 AATTTT-AAAAAAAATAGAAAT
1 AATTTTGAAAAAAAAGAGAAAT
100795668 ATAGGGATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (24 bp):
AATTTTGAAAAAAAAGAGAAATTA
Found at i:100804267 original size:11 final size:12
Alignment explanation
Indices: 100804240--100804268 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
100804230 ACAATAAGAA
100804240 CATTCAAATATT
1 CATTCAAATATT
100804252 CATTCAAATA-T
1 CATTCAAATATT
100804263 CATTCA
1 CATTCA
100804269 CCATTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (12 bp):
CATTCAAATATT
Found at i:100808411 original size:19 final size:19
Alignment explanation
Indices: 100808384--100808436 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
100808374 TATGAAAAAA
* *
100808384 AATAGAAATAAATAATATT
1 AATAAAAATAAATAATATG
100808403 AATAAAAATAAAATAA-ATG
1 AATAAAAAT-AAATAATATG
100808422 AAT-AAAAT-AATAATA
1 AATAAAAATAAATAATA
100808437 ACTAACGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
16 5 0.17
17 1 0.03
18 5 0.17
19 13 0.43
20 6 0.20
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (19 bp):
AATAAAAATAAATAATATG
Found at i:100808426 original size:13 final size:13
Alignment explanation
Indices: 100808384--100808436 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
100808374 TATGAAAAAA
100808384 AATAGAAATAAAT
1 AATAGAAATAAAT
**
100808397 AATATTAATAAA-
1 AATAGAAATAAAT
100808409 AATA-AAATAAAT
1 AATAGAAATAAAT
100808421 GAATA-AAAT-AAT
1 -AATAGAAATAAAT
100808433 AATA
1 AATA
100808437 ACTAACGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
11 10 0.29
12 7 0.20
13 18 0.51
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (13 bp):
AATAGAAATAAAT
Found at i:100808430 original size:24 final size:24
Alignment explanation
Indices: 100808381--100808437 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
100808371 TACTATGAAA
*
100808381 AAAAATAGAAATAAATAATATTAAT
1 AAAAATA-AAATAAATAATATAAAT
100808406 AAAAATAAAATAAATGAATA-AAAT
1 AAAAATAAAATAAAT-AATATAAAT
*
100808430 AATAATAA
1 AAAAATAA
100808438 CTAACGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 18 0.62
25 11 0.38
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (24 bp):
AAAAATAAAATAAATAATATAAAT
Found at i:100812104 original size:22 final size:22
Alignment explanation
Indices: 100812070--100812115 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
100812060 TCTTTTAAAA
*
100812070 CACAAACATTCAATTATATTGG
1 CACAAACAATCAATTATATTGG
*
100812092 CACAATCAATCAATTATATTGG
1 CACAAACAATCAATTATATTGG
100812114 CA
1 CA
100812116 TAATACATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (22 bp):
CACAAACAATCAATTATATTGG
Found at i:100813716 original size:51 final size:51
Alignment explanation
Indices: 100813640--100813741 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
100813630 AAATGAGAGA
100813640 AAATGCTCCCAATTCGGGTGAAAAGTGAGGTAGTTGCAGAGTTCTTAAAAC
1 AAATGCTCCCAATTCGGGTGAAAAGTGAGGTAGTTGCAGAGTTCTTAAAAC
100813691 AAATGCTCCCAATTCGGGTGAAAAGTGAGGTAGTTGCAGAGTTCTTAAAAC
1 AAATGCTCCCAATTCGGGTGAAAAGTGAGGTAGTTGCAGAGTTCTTAAAAC
100813742 TGAAAATGCC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (51 bp):
AAATGCTCCCAATTCGGGTGAAAAGTGAGGTAGTTGCAGAGTTCTTAAAAC
Found at i:100838396 original size:22 final size:22
Alignment explanation
Indices: 100838370--100838415 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
100838360 TTGAGCTGGA
100838370 AATGGGAAGCTCTTTCGAGTTG
1 AATGGGAAGCTCTTTCGAGTTG
100838392 AATGGGAAGCTCTTTCGAGTTG
1 AATGGGAAGCTCTTTCGAGTTG
100838414 AA
1 AA
100838416 CGGGTGGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (22 bp):
AATGGGAAGCTCTTTCGAGTTG
Found at i:100841143 original size:43 final size:43
Alignment explanation
Indices: 100841095--100841244 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 43
100841085 GTCACCAAGA
*
100841095 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCTTTGTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCTTTGTAT
*
100841138 TGTGATTACGTGTAAGACCATGTCTAGGACATTGG-TATTGT-T
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCT-TTGTAT
* * * * * * *
100841180 AGTCAATTACGTGTAAGACCTTGTCTAGGACAATGGCATCG-AT
1 TGT-GATTACATGTAAGACCATGTCTAGGACATTGGCTTTGTAT
* *
100841223 ATGTGATAATATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
100841245 CTTTGGGATA
Statistics
Matches: 88, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
42 4 0.05
43 82 0.93
44 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATTGGCTTTGTAT
Found at i:100842329 original size:22 final size:22
Alignment explanation
Indices: 100842304--100842345 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
100842294 GTTAGTAAAG
100842304 ATGTGAAGTTAGTTGAATTCAT
1 ATGTGAAGTTAGTTGAATTCAT
*
100842326 ATGTGGAGTTAGTTGAATTC
1 ATGTGAAGTTAGTTGAATTC
100842346 TTAAGTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.40
Consensus pattern (22 bp):
ATGTGAAGTTAGTTGAATTCAT
Found at i:100843892 original size:21 final size:21
Alignment explanation
Indices: 100843863--100843912 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
100843853 TACACGTCTA
* * *
100843863 TGTGGAGGCCACACATGCCTG
1 TGTGAAGGCCACACACGCCCG
100843884 TGTGAAGGCCACACACGCCCG
1 TGTGAAGGCCACACACGCCCG
*
100843905 TGTAAAGG
1 TGTGAAGG
100843913 GGACACTCCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.32, T:0.16
Consensus pattern (21 bp):
TGTGAAGGCCACACACGCCCG
Found at i:100845862 original size:27 final size:28
Alignment explanation
Indices: 100845800--100845862 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
100845790 GATTTTATGC
100845800 ATTTAATTTTTAATTATTTTAATAAATG
1 ATTTAATTTTTAATTATTTTAATAAATG
* *
100845828 ATGT-ATTTTTAATTATTTTAATTAAT-
1 ATTTAATTTTTAATTATTTTAATAAATG
*
100845854 TTTTAATTT
1 ATTTAATTT
100845863 ATTATTCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.07
27 25 0.83
28 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (28 bp):
ATTTAATTTTTAATTATTTTAATAAATG
Found at i:100854525 original size:21 final size:22
Alignment explanation
Indices: 100854501--100854543 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
100854491 TAAAAAATTA
*
100854501 AGTA-TGTTGCATTGCAAAAGC
1 AGTATTGTTGCACTGCAAAAGC
*
100854522 AGTATTGTTGTACTGCAAAAGC
1 AGTATTGTTGCACTGCAAAAGC
100854544 TGATTCTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (22 bp):
AGTATTGTTGCACTGCAAAAGC
Found at i:100857830 original size:39 final size:39
Alignment explanation
Indices: 100857771--100857850 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
100857761 GTCTGTGCCT
*
100857771 AAATGTGAGGGAGAAGTTAATGTGGCAACTGATTCTTCA
1 AAATCTGAGGGAGAAGTTAATGTGGCAACTGATTCTTCA
*
100857810 AAATCTGAGGGAGAGGTTAATGTGGCAACTGATTCTTCA
1 AAATCTGAGGGAGAAGTTAATGTGGCAACTGATTCTTCA
100857849 AA
1 AA
100857851 GGCTGCTGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.28
Consensus pattern (39 bp):
AAATCTGAGGGAGAAGTTAATGTGGCAACTGATTCTTCA
Found at i:100874062 original size:23 final size:23
Alignment explanation
Indices: 100874034--100874079 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
100874024 AAATTAAATA
*
100874034 TCTAAGATTATAGA-ATCATATCT
1 TCTAAGATT-TACATATCATATCT
100874057 TCTAAGATTTACATATCATATCT
1 TCTAAGATTTACATATCATATCT
100874080 AATATTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (23 bp):
TCTAAGATTTACATATCATATCT
Found at i:100878113 original size:24 final size:23
Alignment explanation
Indices: 100878078--100878122 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
100878068 GAATAAACAT
* *
100878078 AAGTGGAAATGGAGATGAAGAGG
1 AAGTAGAAATGGAGAAGAAGAGG
100878101 AAGTAGAAGATGGAGAAGAAGA
1 AAGTAGAA-ATGGAGAAGAAGA
100878123 ATGGGCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.49, C:0.00, G:0.40, T:0.11
Consensus pattern (23 bp):
AAGTAGAAATGGAGAAGAAGAGG
Found at i:100885441 original size:20 final size:19
Alignment explanation
Indices: 100885411--100885448 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
100885401 TATAGGGGTG
100885411 ATTTAAAATTTTATCATTA
1 ATTTAAAATTTTATCATTA
100885430 ATTTATAAATTTTATCATT
1 ATTTA-AAATTTTATCATT
100885449 TTGGTCGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTAAAATTTTATCATTA
Found at i:100895431 original size:15 final size:15
Alignment explanation
Indices: 100895411--100895456 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
100895401 ATAGAAATAG
*
100895411 AAATAGAAATATAAT
1 AAATAGAAATATAAC
100895426 AAATAGAAATATAAC
1 AAATAGAAATATAAC
100895441 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
100895457 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.24
Consensus pattern (15 bp):
AAATAGAAATATAAC
Found at i:100895476 original size:15 final size:14
Alignment explanation
Indices: 100895405--100895483 Score: 63
Period size: 15 Copynumber: 5.4 Consensus size: 14
100895395 ATTAATATAG
*
100895405 AAATAGAAATAGA-
1 AAATAAAAATAGAT
100895418 AATATAATAAATAGA-
1 AA-ATAA-AAATAGAT
* *
100895433 AATATAACAATAGTAG
1 AA-ATAAAAATAG-AT
*
100895449 AAATATAAATAGAT
1 AAATAAAAATAGAT
100895463 AAATAAAAATTAGAT
1 AAATAAAAA-TAGAT
100895478 AAATAA
1 AAATAA
100895484 TAGTATTAGA
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
13 2 0.04
14 17 0.31
15 34 0.62
16 2 0.04
ACGTcount: A:0.66, C:0.01, G:0.09, T:0.24
Consensus pattern (14 bp):
AAATAAAAATAGAT
Found at i:100895494 original size:44 final size:43
Alignment explanation
Indices: 100895378--100895494 Score: 107
Period size: 44 Copynumber: 2.7 Consensus size: 43
100895368 GTATATAAAA
*
100895378 ATAAT-AAT-GAAAATAATATTAATATAGAAATAGAAATAGAAAT
1 ATAATAAATAGAAAATAATAAT-AT-TAGAAATAGAAATAGAAAT
* * *
100895421 ATAATAAATAGAAATATAACAATAGTAGAAATATAAATAGATAA-
1 ATAATAAATAGAAA-ATAATAATATTAGAAATAGAAATAGA-AAT
*
100895465 ATAA-AAATTAGATAAATAATAGTATTAGAA
1 ATAATAAA-TAGA-AAATAATAATATTAGAA
100895495 TAACAAAATA
Statistics
Matches: 61, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
43 8 0.13
44 38 0.62
45 9 0.15
46 6 0.10
ACGTcount: A:0.62, C:0.01, G:0.09, T:0.27
Consensus pattern (43 bp):
ATAATAAATAGAAAATAATAATATTAGAAATAGAAATAGAAAT
Found at i:100898071 original size:5 final size:5
Alignment explanation
Indices: 100898056--100898097 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
100898046 AGTGCAAAAG
* *
100898056 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT T
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT T
100898098 ATGATTTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (5 bp):
TGAAT
Found at i:100898570 original size:45 final size:45
Alignment explanation
Indices: 100898506--100898698 Score: 296
Period size: 45 Copynumber: 4.3 Consensus size: 45
100898496 CTGTTACCGC
* *
100898506 TACTGCTACTGTTACCGATTCGGCACTTCGTGTGTCGAATATTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
100898551 TACTGCTACTGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
100898596 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCAAATATTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
** * *
100898641 TACTGTTACCATTACCGATTCAGCACTTTGTGTGTTGAATATTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
100898686 TACTGTTACTGTT
1 TACTGTTACTGTT
100898699 CCGGATTTGT
Statistics
Matches: 136, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (45 bp):
TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:100898895 original size:18 final size:18
Alignment explanation
Indices: 100898874--100899064 Score: 156
Period size: 18 Copynumber: 10.6 Consensus size: 18
100898864 TAACTGATTA
*
100898874 TTACTGAATAATTAACTG
1 TTACTGAATAATTGACTG
* *
100898892 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
*
100898910 TTACTGGATAATTGACTG
1 TTACTGAATAATTGACTG
* * *
100898928 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
100898946 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
100898964 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
100898982 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* * *
100899000 CTACTGAATAACTT-AATAA
1 TTACTGAATAA-TTGACT-G
* *
100899019 TTACTGAATATTTGA-TT
1 TTACTGAATAATTGACTG
*
100899036 TTTCTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
100899054 TTACTGGATAA
1 TTACTGAATAA
100899065 CCGATCAATT
Statistics
Matches: 140, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
17 16 0.11
18 110 0.79
19 14 0.10
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:100898998 original size:72 final size:73
Alignment explanation
Indices: 100898862--100899144 Score: 200
Period size: 72 Copynumber: 3.8 Consensus size: 73
100898852 AAAGGTATAA
* * * * * * *
100898862 AATAACTGATTATTACTGAATAATT-AACTGTTACCGGATAATTGACTGTTACTGGATAATTGAC
1 AATAACTGAATATTACTGAATAATTGATCTATTACCGAATAACTGACTGTCACTGAATAATTGAC
*
100898926 TGTTACTG
66 TGCTACTG
* *
100898934 AATAACTGAATATTACTGAATAATTGATC-ATTACTGAATAACTGATTGTCACTGAATGAA-TGA
1 AATAACTGAATATTACTGAATAATTGATCTATTACCGAATAACTGACTGTCACTGAAT-AATTGA
100898997 CTGCTACTG
65 CTGCTACTG
* * * * * *
100899006 AATAACTTAATAATTACTGAATATTTGAT-T-TTTCTGAATAATTGACTGTTACTGGATAACCGA
1 AATAACTGAAT-ATTACTGAATAATTGATCTATTACCGAATAACTGACTGTCACT-G---A---A
* ***
100899069 TCAATTGATTAAAACTG
58 T-AATTGACTGCTACTG
** * * * *
100899086 AATAACTGGTTATTATTGAATAATTGAT-TGTTACCGAACAACTGACTGTTACTGAATAA
1 AATAACTGAATATTACTGAATAATTGATCTATTACCGAATAACTGACTGTCACTGAATAA
100899145 ATAATTATTC
Statistics
Matches: 168, Mismatches: 30, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
72 87 0.52
73 23 0.14
76 2 0.01
79 21 0.12
80 35 0.21
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (73 bp):
AATAACTGAATATTACTGAATAATTGATCTATTACCGAATAACTGACTGTCACTGAATAATTGAC
TGCTACTG
Found at i:100900316 original size:17 final size:16
Alignment explanation
Indices: 100900266--100900323 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 16
100900256 GGGCGAGAAG
100900266 TAAAAGTTTAGGAGAAAAA
1 TAAAAGTTTAGG-G--AAA
*
100900285 TAAAAAGTTTTGGGAAA
1 T-AAAAGTTTAGGGAAA
100900302 TAAAAGTTTGAGGGAAA
1 TAAAAGTTT-AGGGAAA
100900319 GTAAA
1 -TAAA
100900324 TAGGGGGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 8 0.24
17 10 0.29
18 4 0.12
19 2 0.06
20 10 0.29
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (16 bp):
TAAAAGTTTAGGGAAA
Found at i:100905770 original size:35 final size:35
Alignment explanation
Indices: 100905731--100905800 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
100905721 TTGGATTTGG
100905731 TATGTTTATAATTTGGATTAAAATGATGCTTTGAT
1 TATGTTTATAATTTGGATTAAAATGATGCTTTGAT
100905766 TATGTTTATAATTTGGATTAAAATGATGCTTTGAT
1 TATGTTTATAATTTGGATTAAAATGATGCTTTGAT
100905801 GACTTGTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.03, G:0.17, T:0.49
Consensus pattern (35 bp):
TATGTTTATAATTTGGATTAAAATGATGCTTTGAT
Found at i:100905798 original size:18 final size:18
Alignment explanation
Indices: 100905742--100905798 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
100905732 ATGTTTATAA
100905742 TTTGGATTAAAATGATGC
1 TTTGGATTAAAATGATGC
*** * **
100905760 TTT-GATTATGTTTATAA
1 TTTGGATTAAAATGATGC
100905777 TTTGGATTAAAATGATGC
1 TTTGGATTAAAATGATGC
100905795 TTTG
1 TTTG
100905799 ATGACTTGTT
Statistics
Matches: 26, Mismatches: 12, Indels: 2
0.65 0.30 0.05
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.47
Consensus pattern (18 bp):
TTTGGATTAAAATGATGC
Found at i:100912795 original size:27 final size:28
Alignment explanation
Indices: 100912754--100912882 Score: 160
Period size: 27 Copynumber: 4.8 Consensus size: 28
100912744 AGGAAGCGTC
* *
100912754 CTGGTGGCTATGCCACAATTTATCT-AT
1 CTGGTGGCTCTGCCACAATATATCTGAT
*
100912781 CTAGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAATATATCTGAT
*
100912807 CCTGGTGGCTATGCCACAAT-TATCTGAT
1 -CTGGTGGCTCTGCCACAATATATCTGAT
*
100912835 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAATATATCTGAT
*
100912862 CTGGTGGCTCTACCACAATAT
1 CTGGTGGCTCTGCCACAATAT
100912883 CTGTATTTGG
Statistics
Matches: 88, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
26 10 0.11
27 71 0.81
28 7 0.08
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATATATCTGAT
Found at i:100912842 original size:54 final size:54
Alignment explanation
Indices: 100912751--100912894 Score: 211
Period size: 54 Copynumber: 2.7 Consensus size: 54
100912741 TGGAGGAAGC
*
100912751 GTCCTGGTGGCTATGCCACAATTTATCT-ATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATCT
100912805 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * *
100912859 GTTCTGGTGGCTCTACCACAA-TATCTGTATTTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
100912895 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
53 12 0.14
54 71 0.86
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:100921203 original size:34 final size:34
Alignment explanation
Indices: 100921157--100921225 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
100921147 ATACTACAGG
* * *
100921157 TAAAACTGCTTTTTCAGTTTCTTTTAGAAATCCT
1 TAAAACTACTTTTTCAGTTCCTTCTAGAAATCCT
100921191 TAAAACTACTTTTTCAGTTCCTTCTAGAAATCCT
1 TAAAACTACTTTTTCAGTTCCTTCTAGAAATCCT
100921225 T
1 T
100921226 CTAAGTTCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (34 bp):
TAAAACTACTTTTTCAGTTCCTTCTAGAAATCCT
Found at i:100922336 original size:32 final size:32
Alignment explanation
Indices: 100922295--100922369 Score: 107
Period size: 32 Copynumber: 2.3 Consensus size: 32
100922285 ATATTATACT
*
100922295 AGCCGAAACCCTTTTACCCTA-TTTCCTCCCAA
1 AGCCCAAACCCTTTTACCCTATTTTCC-CCCAA
* *
100922327 AGCCCAAACCTTTTTACTCTATTTTCCCCCAA
1 AGCCCAAACCCTTTTACCCTATTTTCCCCCAA
100922359 AGCCCAAACCC
1 AGCCCAAACCC
100922370 CATTCCCCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
32 33 0.87
33 5 0.13
ACGTcount: A:0.27, C:0.41, G:0.05, T:0.27
Consensus pattern (32 bp):
AGCCCAAACCCTTTTACCCTATTTTCCCCCAA
Found at i:100922500 original size:42 final size:42
Alignment explanation
Indices: 100922453--100922543 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
100922443 CCAACCACCC
* **
100922453 AAACCCTTAAATTTATGCTTCTTCTTCAAAAATCCCTAAATT
1 AAACCCTAAAATCCATGCTTCTTCTTCAAAAATCCCTAAATT
* **
100922495 AAACCCCAAAATCCATTTTTCTTCTTCAAAAATCCCTAAATT
1 AAACCCTAAAATCCATGCTTCTTCTTCAAAAATCCCTAAATT
100922537 AAACCCT
1 AAACCCT
100922544 CCATTCTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.37, C:0.27, G:0.01, T:0.34
Consensus pattern (42 bp):
AAACCCTAAAATCCATGCTTCTTCTTCAAAAATCCCTAAATT
Found at i:100922548 original size:37 final size:40
Alignment explanation
Indices: 100922471--100922558 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 40
100922461 AAATTTATGC
100922471 TTCTTCTTCAAAAATCCCTAAATTAAACCCCAAAATCCATT-T
1 TTCTTCTTCAAAAATCCCTAAATTAAACCCC---ATCCATTCT
100922513 TTCTTCTTCAAAAATCCCTAAATTAAA-CCC-TCCATTCT
1 TTCTTCTTCAAAAATCCCTAAATTAAACCCCATCCATTCT
100922551 TT-TTCTTC
1 TTCTTCTTC
100922559 TTCTTCTTCT
Statistics
Matches: 45, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
37 12 0.27
38 3 0.07
41 3 0.07
42 27 0.60
ACGTcount: A:0.32, C:0.30, G:0.00, T:0.39
Consensus pattern (40 bp):
TTCTTCTTCAAAAATCCCTAAATTAAACCCCATCCATTCT
Found at i:100925037 original size:29 final size:30
Alignment explanation
Indices: 100925005--100925064 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
100924995 CTATATATAT
* *
100925005 ATATTTTTTATATAATTTA-TTTATTTTAA
1 ATATTTTGTATATAATTTATTTTACTTTAA
*
100925034 ATATTTTGTATATTATTTATTTTACTTTAA
1 ATATTTTGTATATAATTTATTTTACTTTAA
100925064 A
1 A
100925065 CCTTATTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (30 bp):
ATATTTTGTATATAATTTATTTTACTTTAA
Found at i:100925076 original size:30 final size:28
Alignment explanation
Indices: 100925009--100925076 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 28
100924999 ATATATATAT
* *
100925009 TTTTTATATAATTTATTTATTTTAAATA
1 TTTTTATATAATTTATTTACTTTAAACA
* *
100925037 TTTTGTATATTATTTATTTTACTTTAAACC
1 TTTT-TATATAATTTA-TTTACTTTAAACA
100925067 TTATTTATAT
1 TT-TTTATAT
100925077 GTAAAAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 4 0.12
29 10 0.30
30 17 0.52
31 2 0.06
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (28 bp):
TTTTTATATAATTTATTTACTTTAAACA
Found at i:100925110 original size:19 final size:19
Alignment explanation
Indices: 100925086--100925161 Score: 63
Period size: 19 Copynumber: 4.3 Consensus size: 19
100925076 TGTAAAAAAA
100925086 TATTTATTTTATTATGTAT
1 TATTTATTTTATTATGTAT
100925105 TATTTA--TTA-TAT-TAT
1 TATTTATTTTATTATGTAT
* * **
100925120 T-TATATTTTATTGTACAT
1 TATTTATTTTATTATGTAT
*
100925138 TATTTATTATATTATGTAT
1 TATTTATTTTATTATGTAT
*
100925157 AATTT
1 TATTT
100925162 TAAAATTTGT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
14 3 0.07
15 4 0.09
16 6 0.14
17 5 0.12
18 3 0.07
19 22 0.51
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.64
Consensus pattern (19 bp):
TATTTATTTTATTATGTAT
Found at i:100925216 original size:15 final size:15
Alignment explanation
Indices: 100925177--100925217 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
100925167 TTTGTAAATT
100925177 ATTATTAAATATTAC
1 ATTATTAAATATTAC
* *
100925192 ATTTTTATATA-T-C
1 ATTATTAAATATTAC
100925205 ATTATTAAATATT
1 ATTATTAAATATT
100925218 TAGTATGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATTAAATATTAC
Found at i:100925492 original size:23 final size:23
Alignment explanation
Indices: 100925466--100925523 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 23
100925456 ATAATTTGTT
*
100925466 TATTTATTTTTGTATCTTTTTT-G
1 TATTTATTTTAGTAT-TTTTTTAG
100925489 TATTTA-TTTAGTATTTTTTTAG
1 TATTTATTTTAGTATTTTTTTAG
100925511 TATGTTTATTTTA
1 TA--TTTATTTTA
100925524 TCTCATAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 6 0.20
22 10 0.33
23 6 0.20
24 4 0.13
25 4 0.13
ACGTcount: A:0.19, C:0.02, G:0.09, T:0.71
Consensus pattern (23 bp):
TATTTATTTTAGTATTTTTTTAG
Found at i:100925556 original size:18 final size:18
Alignment explanation
Indices: 100925533--100925567 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
100925523 ATCTCATAAA
*
100925533 TTATTTGTTATTTTTATG
1 TTATTTATTATTTTTATG
*
100925551 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
100925568 ATATTTGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:100934129 original size:22 final size:22
Alignment explanation
Indices: 100934103--100934144 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
100934093 CTACAAGAAT
100934103 AAATGAATA-TAATATATATTTA
1 AAATG-ATACTAATATATATTTA
*
100934125 AAATGTTACTAATATATATT
1 AAATGATACTAATATATATT
100934145 ATACTTCCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (22 bp):
AAATGATACTAATATATATTTA
Found at i:100934369 original size:22 final size:24
Alignment explanation
Indices: 100934344--100934406 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 24
100934334 AAGTATATGG
*
100934344 AGAGCACTAAG-ATGCTATAC-GA
1 AGAGCACTAAGCATGCTAAACAGA
100934366 AGAGCAC-AAGCATGCTAAACAGA
1 AGAGCACTAAGCATGCTAAACAGA
*
100934389 A-AGCACT-AGCATACTAAA
1 AGAGCACTAAGCATGCTAAA
100934407 AAACAAAGAG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
21 3 0.08
22 30 0.83
23 3 0.08
ACGTcount: A:0.46, C:0.21, G:0.19, T:0.14
Consensus pattern (24 bp):
AGAGCACTAAGCATGCTAAACAGA
Found at i:100939320 original size:22 final size:22
Alignment explanation
Indices: 100939294--100939350 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
100939284 ACAATTTTTA
100939294 TTTTATTTTTCTTCACTAACAT
1 TTTTATTTTTCTTCACTAACAT
100939316 TTTTATTTTTCTTCACTAACAT
1 TTTTATTTTTCTTCACTAACAT
*
100939338 TTTTAATTTTCTT
1 TTTTATTTTTCTT
100939351 TATGGTTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.21, C:0.16, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTATTTTTCTTCACTAACAT
Found at i:100940246 original size:30 final size:30
Alignment explanation
Indices: 100940211--100940268 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
100940201 TAGGCAGTTC
* *
100940211 CACACGGGTA-ATCCACATGTCCGTGTGTGA
1 CACACGGGTAGA-CCACACGCCCGTGTGTGA
100940241 CACACGGGTAGACCACACGCCCGTGTGT
1 CACACGGGTAGACCACACGCCCGTGTGT
100940269 CATGGCCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCGTGTGTGA
Found at i:100941332 original size:3 final size:3
Alignment explanation
Indices: 100941324--100941349 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
100941314 CATCAATCTT
100941324 CAA CAA CAA CAA CAA CAA CAA CAA CA
1 CAA CAA CAA CAA CAA CAA CAA CAA CA
100941350 GATGCAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.35, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:100941445 original size:3 final size:3
Alignment explanation
Indices: 100941437--100941471 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
100941427 TATCAGACTT
*
100941437 ACC ACC ACC ACC ACC ACC ACC CCC ACC ACC ACC AC
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC AC
100941472 AACTACCGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.69, G:0.00, T:0.00
Consensus pattern (3 bp):
ACC
Found at i:100943908 original size:26 final size:26
Alignment explanation
Indices: 100943879--100943984 Score: 185
Period size: 26 Copynumber: 4.1 Consensus size: 26
100943869 TGGTACAAAT
100943879 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
100943905 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
100943931 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
100943957 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
100943983 TG
1 TG
100943985 GTGGGCATTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:100945458 original size:28 final size:26
Alignment explanation
Indices: 100945427--100945490 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
100945417 AATTACTTGA
* **
100945427 ATACCCCTATGTATGGAAAATTACTGTT
1 ATACCCCTA-G-ATGCAAAATTACCATT
*
100945455 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
100945481 ATACCCCTAG
1 ATACCCCTAG
100945491 TGTTACTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:100945635 original size:27 final size:27
Alignment explanation
Indices: 100945595--100945735 Score: 146
Period size: 27 Copynumber: 5.2 Consensus size: 27
100945585 AGGAAGCGTC
100945595 CTGGTGGCTATGCCACAATTATCTGATT
1 CTGGTGGCTATGCCACAATTATCTG-TT
* *
100945623 -TGGTGGCTTTGCCA-TATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGTT
* *
100945649 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGTT
*
100945676 CTGGTGGCTTTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGTT
* * *
100945703 CTGGTGGCTCTGCAACAA-TATCTATAT
1 CTGGTGGCTATGCCACAATTATCTGT-T
100945730 CTGGTG
1 CTGGTG
100945736 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
26 12 0.12
27 82 0.85
28 3 0.03
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGTT
Found at i:100945681 original size:54 final size:54
Alignment explanation
Indices: 100945595--100945753 Score: 214
Period size: 54 Copynumber: 3.0 Consensus size: 54
100945585 AGGAAGCGTC
* *
100945595 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTTTGCCATATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
*
100945649 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
* * * * * *
100945703 CTGGTGGCTCTGCAACAA-TATCTATATCTGGTGACTTCGTCACA-ATATCTG
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGGCTTTGCCACATATATCTG
100945754 ACAGTCTCGC
Statistics
Matches: 94, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 12 0.13
54 82 0.87
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
Found at i:100958167 original size:15 final size:15
Alignment explanation
Indices: 100958147--100958175 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
100958137 ATATTGTTAT
100958147 TTGATAACACGGTGA
1 TTGATAACACGGTGA
100958162 TTGATAACACGGTG
1 TTGATAACACGGTG
100958176 TGTGAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TTGATAACACGGTGA
Found at i:100964528 original size:20 final size:20
Alignment explanation
Indices: 100964487--100964528 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
100964477 AGCACGTGTA
* *
100964487 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
100964507 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
100964527 TT
1 TT
100964529 AATTTTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:100967809 original size:42 final size:43
Alignment explanation
Indices: 100967708--100967866 Score: 207
Period size: 43 Copynumber: 3.7 Consensus size: 43
100967698 AGCTCGTACA
*
100967708 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATAG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATAG
* *
100967751 ATGCC-ACTGTCCCAGACAGGGTCTTACACGTAATCATATAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAAATATAG
*
100967793 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATCA-AATATAG
* * *
100967837 ATGCCAACGTCCCAAACGTGGTTTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
100967867 ATATCACACC
Statistics
Matches: 103, Mismatches: 8, Indels: 9
0.86 0.07 0.08
Matches are distributed among these distances:
42 30 0.29
43 44 0.43
44 29 0.28
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATAG
Found at i:100971511 original size:19 final size:19
Alignment explanation
Indices: 100971487--100971530 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
100971477 AAGGACACAC
100971487 GGCCAAACCACATGCCCAT
1 GGCCAAACCACATGCCCAT
100971506 GGCCAAACCACATGCCCAT
1 GGCCAAACCACATGCCCAT
100971525 GTGCCA
1 G-GCCA
100971531 GGCCGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.30, C:0.41, G:0.18, T:0.11
Consensus pattern (19 bp):
GGCCAAACCACATGCCCAT
Found at i:100976976 original size:15 final size:15
Alignment explanation
Indices: 100976956--100977011 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
100976946 ATAATTAATG
100976956 ATATATATAAAAATC
1 ATATATATAAAAATC
100976971 ATATATACT-AAAATC
1 ATATATA-TAAAAATC
* *
100976986 ATATAATATATAAATA
1 ATAT-ATATAAAAATC
100977002 ATATATATAA
1 ATATATATAA
100977012 CGAATATATG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
15 23 0.66
16 12 0.34
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (15 bp):
ATATATATAAAAATC
Found at i:100977109 original size:17 final size:17
Alignment explanation
Indices: 100977044--100977111 Score: 52
Period size: 17 Copynumber: 3.9 Consensus size: 17
100977034 AATGTATAGT
100977044 AAAATAAATAATAT-A-
1 AAAATAAATAATATAAC
*
100977059 AAAATACATATAACATATAGC
1 AAAATA-A-AT-A-ATATAAC
*
100977080 AAAAATACA-AATATAAC
1 -AAAATAAATAATATAAC
100977097 AAAATAAATAATATA
1 AAAATAAATAATATA
100977112 TATAATGCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
15 6 0.15
16 8 0.20
17 14 0.34
18 2 0.05
19 4 0.10
20 1 0.02
22 6 0.15
ACGTcount: A:0.68, C:0.07, G:0.01, T:0.24
Consensus pattern (17 bp):
AAAATAAATAATATAAC
Found at i:100982999 original size:42 final size:42
Alignment explanation
Indices: 100982940--100983033 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
100982930 CCTGGCGACA
* * * *
100982940 TGGCCATGTAACCCACACGACCTGGACACATGGGCGTGTCTT
1 TGGCCATGTGACCCACACGACCTAGACACACGGGCATGTCTT
* *
100982982 TGGCCGTGTGACCCACACGGCCTAGACACACGGGCATGTCTT
1 TGGCCATGTGACCCACACGACCTAGACACACGGGCATGTCTT
100983024 TGGCCATGTG
1 TGGCCATGTG
100983034 GATTTCGAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (42 bp):
TGGCCATGTGACCCACACGACCTAGACACACGGGCATGTCTT
Found at i:100985737 original size:6 final size:6
Alignment explanation
Indices: 100985712--100985795 Score: 145
Period size: 6 Copynumber: 14.3 Consensus size: 6
100985702 GTCCATCTCA
*
100985712 TTTA-T TTTA-T TTTATC TTTATT TTTATT TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
100985758 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
100985796 ATTAAACTTC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
5 9 0.12
6 67 0.88
ACGTcount: A:0.17, C:0.01, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:100987967 original size:26 final size:26
Alignment explanation
Indices: 100987938--100988045 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
100987928 TGGTACAAAT
100987938 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
100987964 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
100987990 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
100988016 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
100988042 TGAT
1 TGAT
100988046 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:100989739 original size:27 final size:27
Alignment explanation
Indices: 100989643--100989746 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
100989633 AGGAAGCGTC
* *
100989643 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGTCACAA-TATCTGTAT
*
100989670 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGTCACA-ATATCTGTAT
*
100989697 CTGGTGGCTCTATCACAATATCTGTAT
1 CTGGTGGCTCTGTCACAATATCTGTAT
*
100989724 CTGGTGACT-TCGTCACAATATCT
1 CTGGTGGCTCT-GTCACAATATCT
100989747 AGCAGCCTTG
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 9 0.13
27 58 0.85
28 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGTCACAATATCTGTAT
Found at i:100993187 original size:17 final size:16
Alignment explanation
Indices: 100993165--100993267 Score: 53
Period size: 17 Copynumber: 6.6 Consensus size: 16
100993155 AGTGGTTATC
100993165 TTAATATTAAATTTAAT
1 TTAATATT-AATTTAAT
*
100993182 TTAATA-T-ATTTTA-
1 TTAATATTAATTTAAT
100993195 TTAAT-TTAA--TAGAT
1 TTAATATTAATTTA-AT
100993209 TTAATATTAAATTTAAT
1 TTAATATT-AATTTAAT
* * *
100993226 CTAATATTTATCTTGA-
1 TTAATATTAAT-TTAAT
100993242 -TAAGTATT-ATATTAAT
1 TTAA-TATTAAT-TTAAT
100993258 TTAATATTAA
1 TTAATATTAA
100993268 AGTGATTAAG
Statistics
Matches: 66, Mismatches: 7, Indels: 26
0.67 0.07 0.26
Matches are distributed among these distances:
12 1 0.02
13 7 0.11
14 11 0.17
15 10 0.15
16 13 0.20
17 22 0.33
18 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (16 bp):
TTAATATTAATTTAAT
Found at i:100993200 original size:18 final size:19
Alignment explanation
Indices: 100993177--100993225 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 19
100993167 AATATTAAAT
*
100993177 TTAATTTAATATATTT-TA
1 TTAATTTAATAGATTTATA
100993195 TTAATTTAATAGATTTAATA
1 TTAATTTAATAGATTT-ATA
100993215 TTAAATTTAAT
1 TT-AATTTAAT
100993226 CTAATATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 15 0.56
20 4 0.15
21 8 0.30
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TTAATTTAATAGATTTATA
Found at i:100995640 original size:28 final size:28
Alignment explanation
Indices: 100995578--100995639 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
100995568 ACTTTCATAA
*
100995578 ATTATAAA-TTTTATAAAAAATCAAAAT
1 ATTAAAAACTTTTATAAAAAATCAAAAT
*
100995605 ATTGAAAACTTTT-TAAAAAATCAAAAT
1 ATTAAAAACTTTTATAAAAAATCAAAAT
100995632 -TTCAAAAA
1 ATT-AAAAA
100995640 ATAACATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.07
27 24 0.80
28 4 0.13
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (28 bp):
ATTAAAAACTTTTATAAAAAATCAAAAT
Found at i:101002324 original size:26 final size:26
Alignment explanation
Indices: 101002295--101002350 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
101002285 TGATAAAAAT
101002295 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101002321 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101002347 TGAT
1 TGAT
101002351 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:101003882 original size:26 final size:26
Alignment explanation
Indices: 101003830--101003882 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
101003820 TTTACAGTTT
*
101003830 TACCCCTAGGAGATAAATTTCCGAAA
1 TACCCCTAGGAGATAAATTACCGAAA
* *
101003856 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGATAAATT-ACCGAAA
101003882 T
1 T
101003883 GCATGTTTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCGAAA
Found at i:101008257 original size:44 final size:44
Alignment explanation
Indices: 101008206--101008681 Score: 370
Period size: 44 Copynumber: 10.8 Consensus size: 44
101008196 TCTATTATTC
* * *
101008206 TCGATCTGTTCTCTGCCAATACAGAGACGCCAAATCTGCTAACT
1 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCT
* *
101008250 TCGATCTGCTCTCTGCCAATACAAAGACGCCAAA--T-C-ATCT
1 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCT
* * ** * * * *
101008290 TAGATTTGCT-TCAACGTAA-ACACATGAAAGCCAAATCAGCTATGTCT
1 TCGATCTGCTCTCTGC-CAATACAGA-G-ATGCCAAATCTGCTA--TCT
* * *
101008337 TAGATCTGTTCTCTGCCGAATACAGAGATGCCAAATATG-TCATCT
1 TCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCTGCT-ATCT
* * * *
101008382 TTGATTTGCTCTCTGCCAATACAGAGATACTAAATCTGCTATCT
1 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCT
101008426 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAA--T-C-ATCT
1 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCT
* * * * **
101008466 TAGA-CTTGCT-TCAATG-TAA-ACACGTGGAAGCCAAATCAACTATGTCT
1 TCGATC-TGCTCTC--TGCCAATACA-G-AGATGCCAAATCTGCTA--TCT
* *
101008513 TCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTACTATCT
1 TCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCTGCTATCT
* * *
101008558 TTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTGTCT
1 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCT
* * * *
101008602 TCGATATGCTCTCTGCCAATACAGAGATGTCAAATCTGGTATAT
1 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCT
* * *
101008646 TTGATCTGCTCTCCGCCAATACAGAGATGTCAAATC
1 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
101008682 ATCTTAGATT
Statistics
Matches: 347, Mismatches: 55, Indels: 60
0.75 0.12 0.13
Matches are distributed among these distances:
39 13 0.04
40 28 0.08
41 19 0.05
42 2 0.01
44 181 0.52
45 38 0.11
46 2 0.01
47 45 0.13
48 12 0.03
49 7 0.02
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (44 bp):
TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCT
Found at i:101008511 original size:176 final size:176
Alignment explanation
Indices: 101008208--101008637 Score: 646
Period size: 176 Copynumber: 2.4 Consensus size: 176
101008198 TATTATTCTC
* * *
101008208 GATCTGTTCTCTGCCAATACAGAGACGCCAAATCTGCTAACTTCGATCTGCTCTCTGCCAATACA
1 GATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACA
* * * *
101008273 AAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTCTT
66 GAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAACTATGTCTT
* * *
101008338 AGATCTGTTCTCTGCCGAATACAGAGATGCCAAATAT-GTCATCTTT
131 AGATCTGCTCTCCGCCGAATACAGAGATGCCAAATATACT-ATCTTT
* * *
101008384 GATTTGCTCTCTGCCAATACAGAGATACTAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACA
1 GATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACA
* * *
101008449 GAGATGCCAAATCATCTTAGACTTGCTTCAATGTAAACACGTGGAAGCCAAATCAACTATGTCTT
66 GAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAACTATGTCTT
* *
101008514 CGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTACTATCTTT
131 AGATCTGCTCTCCGCCGAATACAGAGATGCCAAATATACTATCTTT
* * *
101008560 GATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTGTCTTCGATATGCTCTCTGCCAATACA
1 GATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACA
*
101008625 GAGATGTCAAATC
66 GAGATGCCAAATC
101008638 TGGTATATTT
Statistics
Matches: 228, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
176 227 1.00
177 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (176 bp):
GATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACA
GAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAACTATGTCTT
AGATCTGCTCTCCGCCGAATACAGAGATGCCAAATATACTATCTTT
Found at i:101008588 original size:220 final size:220
Alignment explanation
Indices: 101008334--101008769 Score: 644
Period size: 220 Copynumber: 2.0 Consensus size: 220
101008324 ATCAGCTATG
* * *
101008334 TCTTAGATCTGTTCTCTGCCGAATACAGAGATGCCAAATATGTCATCTTTGATTTGCTCTCTGCC
1 TCTTAGATCTGCTCTCTGCCGAATACAGAGATGCCAAATATGTCATCTTCGATATGCTCTCTGCC
* *
101008399 AATACAGAGATACT-AAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCA
66 AATACAGAGAT-CTCAAATCTGCTATATTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCA
* *
101008463 TCTTAGACTTGCTTCAATGTAAACACGTGGAAGCCAAATCAACTATGTCTTCGATCTGCTCTCC-
130 TCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATGTCTTCGATCTGCTC-CCT
101008527 GCCGAATACAGAGATGCCAAATCTACTA
194 GCC-AATACAGAGATGCCAAATCTACTA
* * **
101008555 TCTTTGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCTGTTGTCTTCGATATGCTCTCTGCC
1 TCTTAGATCTGCTCTCTGCCGAATACAGAGATGCCAAATATGTCATCTTCGATATGCTCTCTGCC
* * * *
101008619 AATACAGAGATGTCAAATCTGGTATATTTGATCTGCTCTCCGCCAATACAGAGATGTCAAATCAT
66 AATACAGAGATCTCAAATCTGCTATATTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCAT
* * * * *
101008684 CTTAGATTTGCTTTAACGTAAACGCGTGAAAGCCAAATCAGCTATGTCTTCGATCTGTTCCCTGC
131 CTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATGTCTTCGATCTGCTCCCTGC
101008749 CAATACAGAGATGCCAAATCT
196 CAATACAGAGATGCCAAATCT
101008770 GTTGTCTTGG
Statistics
Matches: 193, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
219 23 0.12
220 152 0.79
221 18 0.09
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (220 bp):
TCTTAGATCTGCTCTCTGCCGAATACAGAGATGCCAAATATGTCATCTTCGATATGCTCTCTGCC
AATACAGAGATCTCAAATCTGCTATATTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCAT
CTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATGTCTTCGATCTGCTCCCTGC
CAATACAGAGATGCCAAATCTACTA
Found at i:101009739 original size:5 final size:5
Alignment explanation
Indices: 101009726--101009769 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
101009716 GGCCTCTCCA
* *
101009726 TTTTT TTTTC TTTT- TTCTTT TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTT
101009770 GAAATCTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 2 0.06
5 31 0.89
6 2 0.06
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (5 bp):
TTTTC
Found at i:101009748 original size:15 final size:15
Alignment explanation
Indices: 101009726--101009769 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
101009716 GGCCTCTCCA
101009726 TTTTTTTTTCTTTT-
1 TTTTTTTTTCTTTTC
101009740 TTCTTTTTTTCTTTTC
1 TT-TTTTTTTCTTTTC
*
101009756 TTTTCTTTTCTTTT
1 TTTTTTTTTCTTTT
101009770 GAAATCTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 2 0.07
15 23 0.85
16 2 0.07
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTTTTTTCTTTTC
Found at i:101021056 original size:13 final size:13
Alignment explanation
Indices: 101021034--101021083 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
101021024 TATAGTATTT
101021034 AAAATGAAAATGA
1 AAAATGAAAATGA
* *
101021047 AAAATTAAAATAA
1 AAAATGAAAATGA
101021060 TAAAATGAAAATGA
1 -AAAATGAAAATGA
*
101021074 AAAATTAAAA
1 AAAATGAAAA
101021084 ATGCGGAAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
13 20 0.65
14 11 0.35
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:101022515 original size:19 final size:19
Alignment explanation
Indices: 101022491--101022581 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
101022481 ATAATCTTCA
101022491 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
101022510 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
101022529 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
101022546 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
101022564 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
101022582 ATATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:101022562 original size:35 final size:37
Alignment explanation
Indices: 101022491--101022588 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
101022481 ATAATCTTCA
101022491 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
101022529 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
101022564 ATGATATGCAATCTTAGA-AT-ATATG
1 ATGATA-GCAATCTTAGATATGATATG
101022589 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 21 0.37
36 20 0.35
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:101022818 original size:18 final size:20
Alignment explanation
Indices: 101022780--101022821 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
101022770 TCCCTCTTAC
*
101022780 GTTCTTATTTTCTATTGTTT
1 GTTCTTATTTTCTATTCTTT
101022800 GTTCTTA-TTT-TATTCTTT
1 GTTCTTATTTTCTATTCTTT
101022818 GTTC
1 GTTC
101022822 ATCTTCGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
19 3 0.14
20 7 0.33
ACGTcount: A:0.10, C:0.12, G:0.10, T:0.69
Consensus pattern (20 bp):
GTTCTTATTTTCTATTCTTT
Found at i:101022895 original size:18 final size:17
Alignment explanation
Indices: 101022872--101022907 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
101022862 GTTTCCCTGA
*
101022872 TTTTTTTATATATTTTAG
1 TTTTTTAATA-ATTTTAG
101022890 TTTTTTAATAATTTTAG
1 TTTTTTAATAATTTTAG
101022907 T
1 T
101022908 ATCATATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
TTTTTTAATAATTTTAG
Found at i:101034256 original size:220 final size:220
Alignment explanation
Indices: 101033853--101034440 Score: 926
Period size: 220 Copynumber: 2.7 Consensus size: 220
101033843 GGGCTAAAGT
* * * ** *
101033853 ATAGCAGATTTGACCTTCA-GATGTTTACGCTGAAGCGGATCCAAGATGATTTAACATCTCTGTA
1 ATAGCAGATTTGGCTTTCACG-TGTTTACACTGAAGCAAATCTAAGATGATTTAACATCTCTGTA
* * * *
101033917 TTGTCAGAAAACAAATCGAAGAAACAGATTTGGCATCTCCCTATTCGATGAAGAGCAGATCGAAG
65 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
* *
101033982 ACATAGCAGATCTAACCTTCGTATGTTTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTT
130 ACATAGCAGATCTAACCTTCGGATGTCTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTT
*
101034047 ACGTTAACAAGGAGCAAATTGAAGAC
195 ACGTTAACAAGGAGCAAATCGAAGAC
* *
101034073 ATAGCATATTTGGCTTTCACGTGTTTACACTGAATCAAATCTAAGATGATTTAACATCTCTGTAT
1 ATAGCAGATTTGGCTTTCACGTGTTTACACTGAAGCAAATCTAAGATGATTTAACATCTCTGTAT
* *
101034138 TGTCAGGGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAGA
66 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
*
101034203 CATAGCAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTA
131 CATAGCAGATCTAACCTTCGGATGTCTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTTA
*
101034268 CGTTGACAAGGAGCAAATCGAAGAC
196 CGTTAACAAGGAGCAAATCGAAGAC
* * * ** *
101034293 ATAGTAGATTTGGCTTTCACGTGTTTACACTGAAGCAGATCTAAGATGATATGGCATCTCTGTAC
1 ATAGCAGATTTGGCTTTCACGTGTTTACACTGAAGCAAATCTAAGATGATTTAACATCTCTGTAT
101034358 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
66 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
*
101034423 CATAGCAGATCTGACCTT
131 CATAGCAGATCTAACCTT
101034441 TATTGAAGCA
Statistics
Matches: 337, Mismatches: 30, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
220 336 1.00
221 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (220 bp):
ATAGCAGATTTGGCTTTCACGTGTTTACACTGAAGCAAATCTAAGATGATTTAACATCTCTGTAT
TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
CATAGCAGATCTAACCTTCGGATGTCTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTTA
CGTTAACAAGGAGCAAATCGAAGAC
Found at i:101034491 original size:78 final size:78
Alignment explanation
Indices: 101034383--101034670 Score: 344
Period size: 78 Copynumber: 3.5 Consensus size: 78
101034373 CGAAGAAACA
** * *
101034383 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTTATTGAA
101034448 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
101034461 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGAT-TGGATCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTTATTGA
*
101034525 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
101034539 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGA-C--C-----T
101034604 TTACATTGAAGCAGATCCAAGAT
58 TT--ATTGAAGCAGATCCAAGAT
* *
101034627 GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGA
1 ----GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA
101034671 TAACAGATTT
Statistics
Matches: 180, Mismatches: 14, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
77 1 0.01
78 119 0.66
79 1 0.01
81 1 0.01
86 2 0.01
88 18 0.10
92 38 0.21
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTTATTGAA
GCAGATCCAAGAT
Found at i:101034677 original size:45 final size:45
Alignment explanation
Indices: 101034539--101034812 Score: 268
Period size: 45 Copynumber: 6.1 Consensus size: 45
101034529 GATCCAAGAT
* *
101034539 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATC-AA-AGATAACA
* * * * * ** * * *
101034586 GATCTGACCT-TCATGTGTT-TACATTGAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGTATTAGAC-GGGGAGCAGATCAAAGATAACA
*
101034631 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
* ** *
101034676 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
** *
101034720 GATTTGGCGCCTCTGTATTAGACGGGGAGCAGAT-AGAAGATAATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCA-AAGATAACA
* * *
101034765 GATTTGGCGTCTCTGTATTAGACGGGAAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
101034810 GAT
1 GAT
101034813 ATCGCCTTCC
Statistics
Matches: 182, Mismatches: 38, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
44 38 0.21
45 113 0.62
46 10 0.05
47 21 0.12
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
Found at i:101034750 original size:89 final size:90
Alignment explanation
Indices: 101034611--101034812 Score: 275
Period size: 89 Copynumber: 2.3 Consensus size: 90
101034601 TGTTTACATT
* *
101034611 GAAGCAGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCA-AAGATAA
1 GAAGCAGATCAAAGATAG-CAGATTTGGCACCTCTGTATTAGACGGGGAGCAAAT-AGAAGATAA
*
101034674 CAGATTTGGCATCTTTGTATTAGACGG
64 CAGATTTGGCATCTCTGTATTAGACGG
* ** * * *
101034701 GGAGCAGATTGAAGA-AGCAGATTTGGCGCCTCTGTATTAGACGGGGAGCAGATAGAAGATAATA
1 GAAGCAGATCAAAGATAGCAGATTTGGCACCTCTGTATTAGACGGGGAGCAAATAGAAGATAACA
*
101034765 GATTTGGCGTCTCTGTATTAGACGG
66 GATTTGGCATCTCTGTATTAGACGG
101034790 GAAGCAGATCAAAGATAGCAGAT
1 GAAGCAGATCAAAGATAGCAGAT
101034813 ATCGCCTTCC
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
88 1 0.01
89 76 0.78
90 20 0.21
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (90 bp):
GAAGCAGATCAAAGATAGCAGATTTGGCACCTCTGTATTAGACGGGGAGCAAATAGAAGATAACA
GATTTGGCATCTCTGTATTAGACGG
Found at i:101035226 original size:35 final size:37
Alignment explanation
Indices: 101035155--101035252 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
101035145 ATAATCTTCA
101035155 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
101035193 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
101035228 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
101035253 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:101035252 original size:17 final size:19
Alignment explanation
Indices: 101035155--101035245 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
101035145 ATAATCTTCA
101035155 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
101035174 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
101035193 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
101035210 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
101035228 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
101035246 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:101035271 original size:22 final size:22
Alignment explanation
Indices: 101035155--101035268 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
101035145 ATAATCTTCA
101035155 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
101035174 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
101035193 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
101035210 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
101035228 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
101035250 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
101035269 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:101041620 original size:39 final size:39
Alignment explanation
Indices: 101041566--101041645 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
101041556 TTCAATTTGA
101041566 GATCTTGAGTATCGAATTCAACATCCAACCAGAATCTTG
1 GATCTTGAGTATCGAATTCAACATCCAACCAGAATCTTG
*
101041605 GATCTTGAGTATCGAATTCAACATCCAATCAGAATCTTG
1 GATCTTGAGTATCGAATTCAACATCCAACCAGAATCTTG
101041644 GA
1 GA
101041646 CTCAACAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (39 bp):
GATCTTGAGTATCGAATTCAACATCCAACCAGAATCTTG
Found at i:101043994 original size:13 final size:13
Alignment explanation
Indices: 101043976--101044000 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101043966 CAAGGAAATA
101043976 AAGCAACTAATGT
1 AAGCAACTAATGT
101043989 AAGCAACTAATG
1 AAGCAACTAATG
101044001 CTTAGTAAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (13 bp):
AAGCAACTAATGT
Found at i:101047765 original size:16 final size:16
Alignment explanation
Indices: 101047746--101047779 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
101047736 AACATTTTTT
101047746 TTATAAATGTTATATA
1 TTATAAATGTTATATA
*
101047762 TTATAAATTTTATATA
1 TTATAAATGTTATATA
101047778 TT
1 TT
101047780 TTTGGCTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TTATAAATGTTATATA
Found at i:101048461 original size:25 final size:25
Alignment explanation
Indices: 101048422--101048497 Score: 64
Period size: 26 Copynumber: 2.9 Consensus size: 25
101048412 TTAAAAGTCT
* *
101048422 AAAATTTTTTAAAAAATAAAAATATGA
1 AAAATATTTT-AAAAATAAAAATA-AA
* *
101048449 AAAATA-TTTAAAATTCATAAATAAA
1 AAAATATTTTAAAAAT-AAAAATAAA
101048474 AAAATATTTTATAAATATAAAAAT
1 AAAATATTTTA-AAA-ATAAAAAT
101048498 TTCAAGATTC
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
25 12 0.31
26 13 0.33
27 13 0.33
28 1 0.03
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (25 bp):
AAAATATTTTAAAAATAAAAATAAA
Found at i:101048696 original size:26 final size:25
Alignment explanation
Indices: 101048678--101048740 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
101048668 TTAAAGATTT
101048678 TTTTATTTTTATAATTTTAAAGAGC
1 TTTTATTTTTATAATTTTAAAGAGC
* *
101048703 TTTTATTTTTCTATTTTTAAA-A-C
1 TTTTATTTTTATAATTTTAAAGAGC
101048726 TTTTACTTTTT-TAAT
1 TTTTA-TTTTTATAAT
101048741 ATGATTTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 9 0.26
24 6 0.18
25 19 0.56
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.63
Consensus pattern (25 bp):
TTTTATTTTTATAATTTTAAAGAGC
Found at i:101050163 original size:12 final size:12
Alignment explanation
Indices: 101050146--101050170 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
101050136 TAAAAAATAA
101050146 AAAAAATCATTT
1 AAAAAATCATTT
101050158 AAAAAATCATTT
1 AAAAAATCATTT
101050170 A
1 A
101050171 TGATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAAAATCATTT
Found at i:101055151 original size:9 final size:9
Alignment explanation
Indices: 101055137--101055169 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
101055127 GTTAAACGAA
101055137 TCGAGTTAT
1 TCGAGTTAT
*
101055146 TCGAGTTAA
1 TCGAGTTAT
101055155 TCGAGTTAT
1 TCGAGTTAT
101055164 TCGAGT
1 TCGAGT
101055170 CAACTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:101055158 original size:18 final size:18
Alignment explanation
Indices: 101055135--101055169 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
101055125 GAGTTAAACG
101055135 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
101055153 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
101055170 CAACTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:101055221 original size:9 final size:9
Alignment explanation
Indices: 101055207--101055244 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
101055197 TTGAGTTTTT
101055207 TAATTCGAA
1 TAATTCGAA
101055216 TAATTCGAA
1 TAATTCGAA
101055225 TAATTCGAA
1 TAATTCGAA
101055234 TAATTCGAA
1 TAATTCGAA
101055243 TA
1 TA
101055245 TTAAACTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.34
Consensus pattern (9 bp):
TAATTCGAA
Found at i:101055615 original size:21 final size:21
Alignment explanation
Indices: 101055586--101055625 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
101055576 TCCCTCAAAC
101055586 TTTTATCCCTCAAAATTTTTTA
1 TTTTATCCC-CAAAATTTTTTA
*
101055608 TTTT-TCCCCTAAATTTTT
1 TTTTATCCCCAAAATTTTT
101055626 ACTTCTCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 4 0.24
22 4 0.24
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTATCCCCAAAATTTTTTA
Found at i:101065362 original size:49 final size:49
Alignment explanation
Indices: 101065305--101065403 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
101065295 ATCAACTTTG
101065305 AAACAATGTTCAATACTAGATCTAAACTCAACAATAGGCCCAAAATCAA
1 AAACAATGTTCAATACTAGATCTAAACTCAACAATAGGCCCAAAATCAA
101065354 AAACAATGTTCAATACTAGATCTAAACTCAACAATAGGCCCAAAATCAA
1 AAACAATGTTCAATACTAGATCTAAACTCAACAATAGGCCCAAAATCAA
101065403 A
1 A
101065404 CTTATTGTCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.49, C:0.22, G:0.08, T:0.20
Consensus pattern (49 bp):
AAACAATGTTCAATACTAGATCTAAACTCAACAATAGGCCCAAAATCAA
Found at i:101066446 original size:19 final size:18
Alignment explanation
Indices: 101066422--101066474 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
101066412 AACCCATAAA
101066422 TTTTTTAATTTTTT-ATCTT
1 TTTTTTAATTTTTTGA--TT
101066441 TTTTTTAATTTTCTTGATT
1 TTTTTTAATTTT-TTGATT
*
101066460 TTTGTTAATTTTTTG
1 TTTTTTAATTTTTTG
101066475 TGGGAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 25 0.81
20 2 0.06
21 1 0.03
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.75
Consensus pattern (18 bp):
TTTTTTAATTTTTTGATT
Found at i:101069294 original size:24 final size:25
Alignment explanation
Indices: 101069266--101069323 Score: 100
Period size: 24 Copynumber: 2.3 Consensus size: 25
101069256 AAATGAAATT
101069266 TAAAATTTCGTTATTTTTAACTATG
1 TAAAATTTCGTTATTTTTAACTATG
101069291 -AAAATTTCGTTATTTTTAACTATG
1 TAAAATTTCGTTATTTTTAACTATG
101069315 TTAAAATTT
1 -TAAAATTT
101069324 ATTTCTTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 24 0.77
26 7 0.23
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (25 bp):
TAAAATTTCGTTATTTTTAACTATG
Found at i:101072185 original size:26 final size:26
Alignment explanation
Indices: 101072155--101072210 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
101072145 TGAAATGCCC
101072155 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
101072181 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
101072207 ATCA
1 ATCA
101072211 ATTTTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:101077442 original size:10 final size:10
Alignment explanation
Indices: 101077415--101077463 Score: 73
Period size: 10 Copynumber: 4.9 Consensus size: 10
101077405 TTAAATTCTA
101077415 AAAGATAAAT
1 AAAGATAAAT
101077425 ACAA-ATAAAT
1 A-AAGATAAAT
*
101077435 AAAGATAATT
1 AAAGATAAAT
101077445 AAAGATAAAT
1 AAAGATAAAT
101077455 AAAGATAAA
1 AAAGATAAA
101077464 AGCTAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:101079469 original size:15 final size:15
Alignment explanation
Indices: 101079449--101079494 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
101079439 ATCCAAACAA
*
101079449 AATAAAGTAATAAAT
1 AATAAAATAATAAAT
101079464 AATAAAATAATAAAAT
1 AATAAAATAAT-AAAT
*
101079480 AAAATAAATAATAAA
1 AATA-AAATAATAAA
101079495 AGAAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 10 0.37
16 10 0.37
17 7 0.26
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (15 bp):
AATAAAATAATAAAT
Found at i:101079503 original size:28 final size:28
Alignment explanation
Indices: 101079447--101079506 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
101079437 ATATCCAAAC
* *
101079447 AAAATAAAGTAATAAATAATAAAATAAT
1 AAAATAAAATAATAAATAATAAAAAAAT
101079475 AAAATAAAATAA-ATAATAA-AAGAAAAAT
1 AAAATAAAATAATA-AATAATAA-AAAAAT
101079503 AAAA
1 AAAA
101079507 ATTGGGTTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 3 0.11
28 25 0.89
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (28 bp):
AAAATAAAATAATAAATAATAAAAAAAT
Found at i:101083230 original size:15 final size:17
Alignment explanation
Indices: 101083200--101083231 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
101083190 TTGACACTTG
101083200 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
101083217 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
101083232 AAACATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:101084005 original size:33 final size:33
Alignment explanation
Indices: 101083963--101084029 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
101083953 AAGGGGTGTT
* *
101083963 ACAGTTTGTCATAGTATTTGCTGTTGGAAATCA
1 ACAGTTTGTCATAGTATCTACTGTTGGAAATCA
* *
101083996 ACAGTTTGTCGTTGTATCTACTGTTGGAAATCA
1 ACAGTTTGTCATAGTATCTACTGTTGGAAATCA
101084029 A
1 A
101084030 GCACATTAGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (33 bp):
ACAGTTTGTCATAGTATCTACTGTTGGAAATCA
Found at i:101084144 original size:63 final size:63
Alignment explanation
Indices: 101084042--101084167 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 63
101084032 ACATTAGCTG
*
101084042 CTAATTATTGACCATAGTTTCTAGAGAGGTACCTAAATCTTGCGTTTGTTGTGGAAACCGATT
1 CTAATTATTGACCATAGTTTCTAGAGAGGTACCTAAATCTTACGTTTGTTGTGGAAACCGATT
* *
101084105 CTAATTATTGACCATGGTTTCTAGAGAGGTACCTGAATCTTACGTTTGTTGTGGAAACCGATT
1 CTAATTATTGACCATAGTTTCTAGAGAGGTACCTAAATCTTACGTTTGTTGTGGAAACCGATT
101084168 TTGGTATGGC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (63 bp):
CTAATTATTGACCATAGTTTCTAGAGAGGTACCTAAATCTTACGTTTGTTGTGGAAACCGATT
Found at i:101086408 original size:10 final size:10
Alignment explanation
Indices: 101086389--101086447 Score: 59
Period size: 10 Copynumber: 5.9 Consensus size: 10
101086379 TTAAATTCTA
101086389 AAAGATAAAT
1 AAAGATAAAT
101086399 ACAA-ATAAAT
1 A-AAGATAAAT
* *
101086409 AAAGACAATT
1 AAAGATAAAT
101086419 AAAGATAAAT
1 AAAGATAAAT
*
101086429 -ACGAATAAAT
1 AAAG-ATAAAT
101086439 AAAGATAAA
1 AAAGATAAA
101086448 AGCTAAAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 4 0.10
10 31 0.79
11 4 0.10
ACGTcount: A:0.68, C:0.05, G:0.08, T:0.19
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:101090180 original size:22 final size:22
Alignment explanation
Indices: 101090131--101090173 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
101090121 TAATGAACGG
*
101090131 AGAGCACTGAAGTGCTATACAA
1 AGAGCACTGAAGTGCTAAACAA
101090153 AGAGCAC-GAATGTGCTAAACA
1 AGAGCACTGAA-GTGCTAAACA
101090174 GAAAGCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (22 bp):
AGAGCACTGAAGTGCTAAACAA
Found at i:101091210 original size:5 final size:5
Alignment explanation
Indices: 101091184--101091240 Score: 75
Period size: 5 Copynumber: 11.8 Consensus size: 5
101091174 TTACCAATTT
*
101091184 ATATA ATAT- ATATA ACAT- ATATA ATATA ATATA ATATA ATATA ATAT-
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
101091231 ATAATA ATAT
1 AT-ATA ATAT
101091241 TCTTATTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
4 9 0.20
5 35 0.76
6 2 0.04
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:101105644 original size:6 final size:6
Alignment explanation
Indices: 101105633--101105670 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
101105623 CGTTTCTCCT
101105633 CCTGCC CCTGCC CCTGCC CCTGCC CCTGCC CCTGCC CC
1 CCTGCC CCTGCC CCTGCC CCTGCC CCTGCC CCTGCC CC
101105671 ATGTTTAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.68, G:0.16, T:0.16
Consensus pattern (6 bp):
CCTGCC
Found at i:101112361 original size:27 final size:27
Alignment explanation
Indices: 101112323--101112382 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
101112313 TGTTGTTGTA
*
101112323 TCCTAAGAGACAGATGACCAACGTTTC
1 TCCTAAGAGACAGACGACCAACGTTTC
101112350 TCCTAAGAGACAGACGACCAACGTTTC
1 TCCTAAGAGACAGACGACCAACGTTTC
101112377 T-CTAAG
1 TCCTAAG
101112383 TACCATAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 5 0.16
27 27 0.84
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (27 bp):
TCCTAAGAGACAGACGACCAACGTTTC
Done.