Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 301 of 362
Found at i:101116352 original size:13 final size:13
Alignment explanation
Indices: 101116334--101116358 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101116324 GGTTTGTTTA
101116334 TTAAACTAATTAT
1 TTAAACTAATTAT
101116347 TTAAACTAATTA
1 TTAAACTAATTA
101116359 ACAGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:101124045 original size:23 final size:24
Alignment explanation
Indices: 101124015--101124072 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
101124005 GCGTTTAACG
**
101124015 AACATGTTTGTTTA-ACGTTCGCA
1 AACATGTTCATTTAGACGTTCGCA
* *
101124038 AACATGTTCATTTAGACGTTTGCG
1 AACATGTTCATTTAGACGTTCGCA
101124062 AACATGTTCAT
1 AACATGTTCAT
101124073 ATATATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 12 0.40
24 18 0.60
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (24 bp):
AACATGTTCATTTAGACGTTCGCA
Found at i:101128588 original size:32 final size:33
Alignment explanation
Indices: 101128542--101128604 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
101128532 CCACATGTTT
101128542 GTGTGGGCCCACACGCCCAGATTGACCTTGCTC
1 GTGTGGGCCCACACGCCCAGATTGACCTTGCTC
* *
101128575 GTGT-GGCTCACACGCCCAGATTGGCCTTGC
1 GTGTGGGCCCACACGCCCAGATTGACCTTGC
101128605 CCATATAGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 24 0.86
33 4 0.14
ACGTcount: A:0.14, C:0.35, G:0.29, T:0.22
Consensus pattern (33 bp):
GTGTGGGCCCACACGCCCAGATTGACCTTGCTC
Found at i:101130497 original size:11 final size:12
Alignment explanation
Indices: 101130480--101130524 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
101130470 ATCATTAATA
101130480 AATAAATGAGTC
1 AATAAATGAGTC
101130492 -ATAAATGAGTC
1 AATAAATGAGTC
*
101130503 AATAAACGAG-C
1 AATAAATGAGTC
101130514 AAATAAATGAG
1 -AATAAATGAG
101130525 CTTTTAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 12 0.41
12 17 0.59
ACGTcount: A:0.53, C:0.09, G:0.18, T:0.20
Consensus pattern (12 bp):
AATAAATGAGTC
Found at i:101131365 original size:30 final size:31
Alignment explanation
Indices: 101131323--101131381 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
101131313 GTGTTTGGGG
*
101131323 GATGGTTTAATGGTAAATTGATTTAATTTGA
1 GATGGTTTAATGGTAAATTGATTGAATTTGA
101131354 GATGG-TTAATGGTAAATTGATTGAATTT
1 GATGGTTTAATGGTAAATTGATTGAATTT
101131382 ACACTAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (31 bp):
GATGGTTTAATGGTAAATTGATTGAATTTGA
Found at i:101132164 original size:23 final size:23
Alignment explanation
Indices: 101132121--101132164 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
101132111 GTGATTTATC
* *
101132121 GCATTTTTACTGGTAACTTTTCT
1 GCATTTTTACTGGCAAATTTTCT
101132144 GCATTTTTACTGGCAAATTTT
1 GCATTTTTACTGGCAAATTTT
101132165 TTTGTATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (23 bp):
GCATTTTTACTGGCAAATTTTCT
Found at i:101144374 original size:16 final size:17
Alignment explanation
Indices: 101144342--101144374 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
101144332 ATGCATTAAA
*
101144342 CTAGCCTGTACATGCAC
1 CTAGCCTGTAAATGCAC
101144359 CTAGCCT-TAAATGCAC
1 CTAGCCTGTAAATGCAC
101144375 ATCCACATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (17 bp):
CTAGCCTGTAAATGCAC
Found at i:101146505 original size:30 final size:30
Alignment explanation
Indices: 101146457--101146514 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
101146447 ATTTGGTTGG
* *
101146457 TTTGGTTGTGTATAAAATGGTGCATATGGT
1 TTTGGTTATGTATAAAATGATGCATATGGT
* * *
101146487 TTTGGTTATGTGTTAAATGATGGATATG
1 TTTGGTTATGTATAAAATGATGCATATG
101146515 TGATGCTTGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.45
Consensus pattern (30 bp):
TTTGGTTATGTATAAAATGATGCATATGGT
Found at i:101150674 original size:39 final size:39
Alignment explanation
Indices: 101150627--101150767 Score: 194
Period size: 39 Copynumber: 3.6 Consensus size: 39
101150617 CATATTCATT
* * *
101150627 TTTAAGCATGTATCACATTA-TACATATAATCACATAGCA
1 TTTAAGCATATATCACAATACT-CATATAATCACATAACA
* * *
101150666 TTCAAGCATATATCACAATACTCATAAAATCACATAACG
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
101150705 TTTAAGCATATATCACAAGACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
101150744 TTTAAGCATATATCAAAATACTCA
1 TTTAAGCATATATCACAATACTCA
101150768 AAAACATGTT
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 88 0.99
40 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.06, T:0.30
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:101153771 original size:26 final size:26
Alignment explanation
Indices: 101153740--101153847 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
101153730 TGAAGTGCCC
*
101153740 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
101153766 ATCATGGAACATTTACCTAGCCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
101153792 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
101153818 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
101153844 ATCA
1 ATCA
101153848 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:101156817 original size:25 final size:26
Alignment explanation
Indices: 101156776--101156881 Score: 198
Period size: 25 Copynumber: 4.2 Consensus size: 26
101156766 TGATACAAGT
101156776 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101156802 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101156827 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101156853 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101156878 TGAT
1 TGAT
101156882 GGAATTTCAT
Statistics
Matches: 79, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
25 47 0.59
26 32 0.41
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:101156831 original size:51 final size:51
Alignment explanation
Indices: 101156776--101156881 Score: 212
Period size: 51 Copynumber: 2.1 Consensus size: 51
101156766 TGATACAAGT
101156776 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
101156827 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
101156878 TGAT
1 TGAT
101156882 GGAATTTCAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
Found at i:101164093 original size:30 final size:30
Alignment explanation
Indices: 101164057--101164127 Score: 97
Period size: 30 Copynumber: 2.4 Consensus size: 30
101164047 GGAAAATCAC
* * *
101164057 CATAAATTGTGGGAGATGGGTTAGAAGCTA
1 CATAAATTATGGAAGATGAGTTAGAAGCTA
* *
101164087 CATAAATTATGTAAGATGAGTTAGAAGCTG
1 CATAAATTATGGAAGATGAGTTAGAAGCTA
101164117 CATAAATTATG
1 CATAAATTATG
101164128 TAATTAAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
CATAAATTATGGAAGATGAGTTAGAAGCTA
Found at i:101164128 original size:30 final size:30
Alignment explanation
Indices: 101164070--101164130 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
101164060 AAATTGTGGG
*
101164070 AGATGGGTTAGAAGCTACATAAATTATGTA
1 AGATGAGTTAGAAGCTACATAAATTATGTA
*
101164100 AGATGAGTTAGAAGCTGCATAAATTATGTA
1 AGATGAGTTAGAAGCTACATAAATTATGTA
101164130 A
1 A
101164131 TTAAATATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
AGATGAGTTAGAAGCTACATAAATTATGTA
Found at i:101167465 original size:23 final size:22
Alignment explanation
Indices: 101167415--101167466 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
101167405 AAATCTCAGG
* **
101167415 CATGAATAGTAAAGATTCTTTG
1 CATGAATAGTAAAAATTCTTAA
101167437 CGATGAATAGTAAAAATTCTCTAA
1 C-ATGAATAGTAAAAATTCT-TAA
101167461 CATGAA
1 CATGAA
101167467 CTATGAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 1 0.04
23 22 0.88
24 2 0.08
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (22 bp):
CATGAATAGTAAAAATTCTTAA
Found at i:101179822 original size:22 final size:21
Alignment explanation
Indices: 101179792--101179857 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
101179782 TACAAATTAA
101179792 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
101179814 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
101179835 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
101179854 ATCT
1 ATCT
101179858 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:101179844 original size:19 final size:19
Alignment explanation
Indices: 101179809--101179906 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
101179799 AGATTACAAG
101179809 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
101179830 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101179849 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
101179866 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101179885 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101179904 ATC
1 ATC
101179907 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:101179873 original size:36 final size:37
Alignment explanation
Indices: 101179809--101179906 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
101179799 AGATTACAAG
101179809 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
101179849 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
101179885 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
101179907 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:101180667 original size:206 final size:206
Alignment explanation
Indices: 101180302--101181859 Score: 2562
Period size: 206 Copynumber: 7.6 Consensus size: 206
101180292 ATCTTCGATC
* * * * * *
101180302 TGTTTTCTAACAATACAGAGATTCCCAATCATCTTAGATTTGCTTCATCGTAAGCACGCGAAAAC
1 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
* * * * *
101180367 CAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGC
66 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGC
* * * *
101180432 TTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCT
131 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCC
*
101180497 AAACTTCGATT
196 AAACTTTGATT
101180508 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
1 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
* * *
101180573 CAAATCAGCTATATCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTAGATCTGC
66 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGC
* **
101180638 TTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCC
131 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCC
101180703 AAACTTTGATT
196 AAACTTTGATT
* *
101180714 TGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCATGTGAAAGC
1 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
* * * *
101180779 CAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGC
66 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGC
* * * * * *
101180844 TTCAATCTAATCATTTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTTGAATATGGAGACGCC
131 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCC
101180909 AAACTTTGATT
196 AAACTTTGATT
101180920 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
1 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
101180985 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGC
66 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGC
*
101181050 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAATATGGAGACGCC
131 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCC
101181115 AAACTTTGATT
196 AAACTTTGATT
*
101181126 TGTTCTCTGACAATACAGAGATGGCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
1 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
101181191 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGC
66 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGC
*
101181256 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTTCGTCGAATATGGAGACGCC
131 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCC
101181321 AAACTTTGATT
196 AAACTTTGATT
*
101181332 TGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
1 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
* * * *
101181397 CAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGC
66 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGC
* * * *
101181462 TTCAGTCTAATCATTTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCC
131 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCC
101181527 AAACTTTGATT
196 AAACTTTGATT
* *
101181538 TATTCTCTGACAATATA-AGGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAG
1 TGTTCTCTGACAATACAGA-GATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAG
*
101181602 CCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTG
65 CCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTG
* * ** *
101181667 ATTCAGTATAAACATATGAAGGCCAGATCTACTATGTGTCTGCTCTCCGTCGAATATGGAGACGC
130 CTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGC
101181732 CAAACTTTGATT
195 CAAACTTTGATT
* * * *
101181744 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTATATTTGCTTCAGCGTAAAC-CGTGGAAGC
1 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
*
101181808 CAAATTAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
66 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
101181860 TGCTATCTTC
Statistics
Matches: 1262, Mismatches: 88, Indels: 5
0.93 0.06 0.00
Matches are distributed among these distances:
205 59 0.05
206 1202 0.95
207 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (206 bp):
TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGC
TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCC
AAACTTTGATT
Found at i:101181879 original size:44 final size:44
Alignment explanation
Indices: 101181829--101182299 Score: 334
Period size: 44 Copynumber: 10.7 Consensus size: 44
101181819 TGTCTTCGAT
* * * *
101181829 TTGTTCCTTGTAAGCACAAGGATGCCAAATCTGCTATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAC
* ** *
101181873 TTGTTCCCTATAAACACAGGGATACC--ATGCTGAAATCTTCGA-
1 TTGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCAAC
* * * * * * * * *
101181915 TCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATATTCGAT
1 T-TG-TTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAC
*
101181961 TTGTTCCCTATAAACACAGGGATACCAAATCTGCTATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAC
** *
101182005 TTGTTCCCTATAAACACAGGGATGCC--ATGCTGAAATCTTCGA-
1 TTGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCAAC
* * * ** ** * * *
101182047 TCTGCTTCGCTGTAAGCACAGAAATGTTAGATCTGCTATCTTCGAT
1 T-TG-TTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAC
101182093 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAC
* ** **
101182137 TTGTTCCCTATAAACACATGGATGCCATGT-TGAAATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAC
** *
101182180 TTGTTCCCTATAAACACAGGGATGCC--ATGCTGAAATCTTCGA-
1 TTGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCAAC
* * * * * * ** *
101182222 TCTGCTTCGCTGTAAGCACA-AGAGTGTCAGATCTGCTATCTTTGAT
1 T-TG-TTCCCTATAAACACAGGGA-TGCCAAATCTGCTATCTTCAAC
*
101182268 TTGTTCCCTATAAACACTGGGATGCCAAATCT
1 TTGTTCCCTATAAACACAGGGATGCCAAATCT
101182300 TGTTTCTTTG
Statistics
Matches: 333, Mismatches: 73, Indels: 42
0.74 0.16 0.09
Matches are distributed among these distances:
41 1 0.00
42 7 0.02
43 75 0.23
44 202 0.61
45 39 0.12
46 9 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAC
Found at i:101181994 original size:132 final size:132
Alignment explanation
Indices: 101181823--101182176 Score: 609
Period size: 132 Copynumber: 2.7 Consensus size: 132
101181813 TAGCTATGTC
* * * *
101181823 TTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
1 TTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
* *
101181888 ACAGGGATACCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTA
66 ACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGAAATGTCAGATCTGCTA
101181953 TA
131 TA
*
101181955 TTCGATTTGTTCCCTATAAACACAGGGATACCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
1 TTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
*
101182020 ACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGAAATGTTAGATCTGCTA
66 ACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGAAATGTCAGATCTGCTA
*
101182085 TC
131 TA
101182087 TTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
1 TTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
* *
101182152 ACATGGATGCCATGTTGAAATCTTC
66 ACAGGGATGCCATGCTGAAATCTTC
101182177 AACTTGTTCC
Statistics
Matches: 210, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 210 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
TTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
ACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGAAATGTCAGATCTGCTA
TA
Found at i:101182205 original size:175 final size:176
Alignment explanation
Indices: 101181907--101182299 Score: 574
Period size: 175 Copynumber: 2.2 Consensus size: 176
101181897 CCATGCTGAA
* * * * * * * * *
101181907 ATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATATTCGATTTGTTCCCTAT
1 ATCTTCGATTTG-TTCCCTATAAACACAGGGATGCCAAATCTGCTATATTCAACTTGTTCCCTAT
**
101181972 AAACACAGGGATACCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTG
65 AAACACAGGGATACCAAATCTGAAATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTG
*
101182037 AAATCTTCGATCTGCTTCGCTGTAAGCAC-AGAAATGTTAGATCTGCT
130 AAATCTTCGATCTGCTTCGCTGTAAGCACAAG-AATGTCAGATCTGCT
*
101182084 ATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
1 ATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATATTCAACTTGTTCCCTATA
* * **
101182149 AACACATGGATGCCATGT-TGAAATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGA
66 AACACAGGGATACCAAATCTGAAATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGA
*
101182213 AATCTTCGATCTGCTTCGCTGTAAGCACAAGAGTGTCAGATCTGCT
131 AATCTTCGATCTGCTTCGCTGTAAGCACAAGAATGTCAGATCTGCT
* *
101182259 ATCTTTGATTTGTTCCCTATAAACACTGGGATGCCAAATCT
1 ATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCT
101182300 TGTTTCTTTG
Statistics
Matches: 195, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
175 124 0.64
176 60 0.31
177 11 0.06
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (176 bp):
ATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATATTCAACTTGTTCCCTATA
AACACAGGGATACCAAATCTGAAATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGA
AATCTTCGATCTGCTTCGCTGTAAGCACAAGAATGTCAGATCTGCT
Found at i:101183176 original size:16 final size:15
Alignment explanation
Indices: 101183152--101183186 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
101183142 TGGCCTCTCC
*
101183152 ATTTTTCTTTTTTCAT
1 ATTTCTCTTTTTTC-T
101183168 ATTTCTCTTTTTTCT
1 ATTTCTCTTTTTTCT
101183183 ATTT
1 ATTT
101183187 TTTTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.74
Consensus pattern (15 bp):
ATTTCTCTTTTTTCT
Found at i:101183187 original size:9 final size:9
Alignment explanation
Indices: 101183169--101183207 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
101183159 TTTTTTCATA
*
101183169 TTTCTCTTT
1 TTTCTATTT
101183178 TTTCTATTT
1 TTTCTATTT
101183187 TTT-TATTT
1 TTTCTATTT
*
101183195 TTTTTATTT
1 TTTCTATTT
101183204 TTTC
1 TTTC
101183208 CTTTTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
8 8 0.30
9 19 0.70
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTCTATTT
Found at i:101183212 original size:17 final size:17
Alignment explanation
Indices: 101183169--101183216 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
101183159 TTTTTTCATA
*
101183169 TTTCTCTTTTTTCTATTT
1 TTTC-CTTTTTTTTATTT
**
101183187 TTTTATTTTTTTTATTT
1 TTTCCTTTTTTTTATTT
101183204 TTTCCTTTTTTTT
1 TTTCCTTTTTTTT
101183217 TGAAATAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 22 0.88
18 3 0.12
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTCCTTTTTTTTATTT
Found at i:101189516 original size:22 final size:21
Alignment explanation
Indices: 101189486--101189551 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
101189476 TACAAATTAA
101189486 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
101189508 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
101189529 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
101189548 ATCT
1 ATCT
101189552 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:101189538 original size:19 final size:19
Alignment explanation
Indices: 101189503--101189600 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
101189493 AGATTACAAG
101189503 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
101189524 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101189543 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
101189560 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101189579 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101189598 ATC
1 ATC
101189601 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:101189567 original size:36 final size:37
Alignment explanation
Indices: 101189503--101189600 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
101189493 AGATTACAAG
101189503 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
101189543 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
101189579 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
101189601 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:101191662 original size:26 final size:24
Alignment explanation
Indices: 101191625--101191675 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 24
101191615 ATACTCAGAT
101191625 AACTCCCCACTAATTCTCAGATTTCCA
1 AACTCCCCACT-A--CTCAGATTTCCA
101191652 AACT-CCCACTACTCAGATTTCCA
1 AACTCCCCACTACTCAGATTTCCA
101191675 A
1 A
101191676 TACAACTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 13 0.54
25 1 0.04
26 6 0.25
27 4 0.17
ACGTcount: A:0.31, C:0.37, G:0.04, T:0.27
Consensus pattern (24 bp):
AACTCCCCACTACTCAGATTTCCA
Found at i:101194233 original size:8 final size:8
Alignment explanation
Indices: 101194220--101194256 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
101194210 TTATGTTTAG
101194220 TATATTAT
1 TATATTAT
101194228 TATATTAT
1 TATATTAT
101194236 TATATTAT
1 TATATTAT
101194244 TATATTAT
1 TATATTAT
101194252 TATAT
1 TATAT
101194257 AATAAAGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:101194319 original size:5 final size:5
Alignment explanation
Indices: 101194276--101194321 Score: 56
Period size: 5 Copynumber: 9.2 Consensus size: 5
101194266 ACTTTATGTT
* * * *
101194276 TTATA TTAAA TTAAA TTAAA TTAAA TTATA TTATA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
101194322 ATAAACTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (5 bp):
TTATA
Found at i:101194319 original size:15 final size:15
Alignment explanation
Indices: 101194276--101194321 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
101194266 ACTTTATGTT
*
101194276 TTATATTAAATTAAA
1 TTATATTAAATTATA
*
101194291 TTAAATTAAATTATA
1 TTATATTAAATTATA
*
101194306 TTATATTATATTATA
1 TTATATTAAATTATA
101194321 T
1 T
101194322 ATAAACTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTATATTAAATTATA
Found at i:101195929 original size:45 final size:45
Alignment explanation
Indices: 101195878--101196065 Score: 306
Period size: 45 Copynumber: 4.2 Consensus size: 45
101195868 CCGCTACTGC
*
101195878 TACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTAT
1 TACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACTAT
*
101195923 TACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACTGT
1 TACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACTAT
* * *
101195968 TACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGT
1 TACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACTAT
* *
101196013 TACCGTTACCGATTCGACACTTTGTGTGTCGGATATTGTTACTA-
1 TACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACTAT
101196057 TACTGTTAC
1 TACTGTTAC
101196066 TGTTACTGTT
Statistics
Matches: 135, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
44 8 0.06
45 127 0.94
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (45 bp):
TACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACTAT
Found at i:101196328 original size:18 final size:18
Alignment explanation
Indices: 101196239--101196333 Score: 70
Period size: 18 Copynumber: 5.3 Consensus size: 18
101196229 AAAGGTATAA
* * *
101196239 AATAACTGATTGTCACTG
1 AATAATTGACTGTTACTG
*
101196257 AATGAA-TGACTGTTACTA
1 AAT-AATTGACTGTTACTG
* *
101196275 AATAACTTAATTGTTACTG
1 AATAA-TTGACTGTTACTG
*
101196294 AAT-ATCTGA-TTTTACTG
1 AATAAT-TGACTGTTACTG
101196311 AATAATTGACTGTTACTG
1 AATAATTGACTGTTACTG
*
101196329 GATAA
1 AATAA
101196334 CCGATCAATT
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
17 16 0.26
18 31 0.51
19 14 0.23
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
AATAATTGACTGTTACTG
Found at i:101198487 original size:45 final size:45
Alignment explanation
Indices: 101198419--101198534 Score: 135
Period size: 45 Copynumber: 2.6 Consensus size: 45
101198409 GATGTCCTAG
* * * *
101198419 ACATGGTCTTACAC-ATAACCACATATATCGATGCCAGCGTCTCAA
1 ACATGGTCTTACACGA-AAACACATATATCAATGCCAACGTCCCAA
* *
101198464 ACATGGTCTTACACGAAAACACATATATCAATGCCAATGTCCCAG
1 ACATGGTCTTACACGAAAACACATATATCAATGCCAACGTCCCAA
** *
101198509 ATGTGGTCTTACACGAAAATACATAT
1 ACATGGTCTTACACGAAAACACATAT
101198535 CATAATCCTA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 60 0.98
46 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (45 bp):
ACATGGTCTTACACGAAAACACATATATCAATGCCAACGTCCCAA
Found at i:101198788 original size:45 final size:44
Alignment explanation
Indices: 101198738--101198835 Score: 151
Period size: 45 Copynumber: 2.2 Consensus size: 44
101198728 TGAAAACTGG
101198738 AACACATATATCGATGCCAACGTCCCAGACGTGGTCGTACACGAA
1 AACACATATATCGATGCCAACGTCCCAGACGT-GTCGTACACGAA
* * *
101198783 AACACATATATCGATGCGAACGTCCCAGATGTGTCTTACACGAA
1 AACACATATATCGATGCCAACGTCCCAGACGTGTCGTACACGAA
*
101198827 AATACATAT
1 AACACATAT
101198836 CATAATCCTA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 19 0.39
45 30 0.61
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (44 bp):
AACACATATATCGATGCCAACGTCCCAGACGTGTCGTACACGAA
Found at i:101198981 original size:301 final size:302
Alignment explanation
Indices: 101198438--101199034 Score: 1016
Period size: 301 Copynumber: 2.0 Consensus size: 302
101198428 TACACATAAC
* * * *
101198438 CACATATATCGATGCCAGCGTCTCAAACATGGTCTTACACGAAAACACATATATCAATGCCAATG
1 CACATATATCGATGCCAACGTCCCAAACATGGTCGTACACGAAAACACATATATCAATGCCAACG
*
101198503 TCCCAGATGTGGTCTTACACGAAAATACATATCATAATCCTATGGTTCGTATGGGGCTTTTGGAC
66 TCCCAGATGTGGTCTTACACGAAAATACATATCATAATCCTATGGTTCGTACGGGGCTTTTGGAC
* *
101198568 GTCATAACTCAGTCGAAACAAATTCGTTAACATAGTTCCCAAGCTTATTTATATTCGGCTAACAT
131 GTCATAACTCAGTCGAAACAAATTCATTAACATAGTTCCCAAGCTTATTTACATTCGGCTAACAT
101198633 ATATATAAATTTTCAAATAATTCATTTCAGCATATAGAACTCATATTTATTTAAAATTAACAATA
196 ATATATAAATTTTCAAATAATTCATTTCAGCATATAGAACTCATATTTATTTAAAATTAACAATA
* *
101198698 TATATTTACTTATAAACTTGCCTCGGACGATGAAAACTGGAA
261 TATATTTACTTATAAACTTACCTCGGACAATGAAAACTGGAA
* * * *
101198740 CACATATATCGATGCCAACGTCCCAGACGTGGTCGTACACGAAAACACATATATCGATGCGAACG
1 CACATATATCGATGCCAACGTCCCAAACATGGTCGTACACGAAAACACATATATCAATGCCAACG
*
101198805 TCCCAGATGT-GTCTTACACGAAAATACATATCATAATCCTATGGTTCGTACGGGGCTTTTGGGC
66 TCCCAGATGTGGTCTTACACGAAAATACATATCATAATCCTATGGTTCGTACGGGGCTTTTGGAC
* *
101198869 GTCATTACTGAGTCGAAACAAATTCATTAACATAGTTCCCAAGCTTATTTACATTCGGCTAACAT
131 GTCATAACTCAGTCGAAACAAATTCATTAACATAGTTCCCAAGCTTATTTACATTCGGCTAACAT
*
101198934 ATATATATATTTTCAAATAATTCATTTCAGCATATAGAACTCATATTTATTTAAAATTAACAATA
196 ATATATAAATTTTCAAATAATTCATTTCAGCATATAGAACTCATATTTATTTAAAATTAACAATA
* *
101198999 TCTATTTACTTATAAACTTACCTTGGACAATGAAAA
261 TATATTTACTTATAAACTTACCTCGGACAATGAAAA
101199035 TCGGAATGGG
Statistics
Matches: 276, Mismatches: 19, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
301 209 0.76
302 67 0.24
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32
Consensus pattern (302 bp):
CACATATATCGATGCCAACGTCCCAAACATGGTCGTACACGAAAACACATATATCAATGCCAACG
TCCCAGATGTGGTCTTACACGAAAATACATATCATAATCCTATGGTTCGTACGGGGCTTTTGGAC
GTCATAACTCAGTCGAAACAAATTCATTAACATAGTTCCCAAGCTTATTTACATTCGGCTAACAT
ATATATAAATTTTCAAATAATTCATTTCAGCATATAGAACTCATATTTATTTAAAATTAACAATA
TATATTTACTTATAAACTTACCTCGGACAATGAAAACTGGAA
Found at i:101210842 original size:39 final size:40
Alignment explanation
Indices: 101210797--101211019 Score: 240
Period size: 40 Copynumber: 5.7 Consensus size: 40
101210787 GCTCCTCGTT
* * * *
101210797 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
101210837 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
101210876 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
101210916 CAAAGGCCTTCGGG-CTTAACCCGGAATT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
101210954 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
101210995 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
101211020 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
37 2 0.01
38 20 0.13
39 57 0.36
40 67 0.43
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:101210900 original size:79 final size:78
Alignment explanation
Indices: 101210797--101211019 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 78
101210787 GCTCCTCGTT
* * *
101210797 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
101210862 TTTAATAACTCGCA
66 ATT-ATAACTCGCA
* * * *
101210876 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
101210940 AATTGTATCTCGCA
65 AATTATAACTCGCA
* * * * * *
101210954 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
101211018 GA
64 GA
101211020 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 42 0.35
79 66 0.55
80 9 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
ATTATAACTCGCA
Found at i:101211028 original size:41 final size:41
Alignment explanation
Indices: 101210951--101211028 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
101210941 ATTGTATCTC
* * *
101210951 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
101210992 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
101211029 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:101218751 original size:39 final size:40
Alignment explanation
Indices: 101218706--101218928 Score: 240
Period size: 40 Copynumber: 5.7 Consensus size: 40
101218696 GCTCCTCGTT
* * * *
101218706 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
101218746 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
101218785 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
101218825 CAAAGGCCTTCGGG-CTTAACCCGGAATT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
101218863 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
101218904 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
101218929 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
37 2 0.01
38 20 0.13
39 57 0.36
40 67 0.43
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:101218809 original size:79 final size:78
Alignment explanation
Indices: 101218706--101218928 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 78
101218696 GCTCCTCGTT
* * *
101218706 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
101218771 TTTAATAACTCGCA
66 ATT-ATAACTCGCA
* * * *
101218785 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
101218849 AATTGTATCTCGCA
65 AATTATAACTCGCA
* * * * * *
101218863 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
101218927 GA
64 GA
101218929 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 42 0.35
79 66 0.55
80 9 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
ATTATAACTCGCA
Found at i:101218937 original size:41 final size:41
Alignment explanation
Indices: 101218860--101218937 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
101218850 ATTGTATCTC
* * *
101218860 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
101218901 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
101218938 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:101221302 original size:5 final size:5
Alignment explanation
Indices: 101221292--101221389 Score: 62
Period size: 5 Copynumber: 19.2 Consensus size: 5
101221282 TGAATCCTCC
* *
101221292 TATTT TATTT TATTT T-TTCT TATTTT TATTT TATTT T-CTT TATTA T-TTT
1 TATTT TATTT TATTT TATT-T TA-TTT TATTT TATTT TATTT TATTT TATTT
* *
101221341 TATTTT TCTTT TGATTTT TATTT TCATTT CAATTT TA--T TATTT TATTT
1 TA-TTT TATTT T-A-TTT TATTT T-ATTT -TATTT TATTT TATTT TATTT
101221389 T
1 T
101221390 GAAAGACATC
Statistics
Matches: 73, Mismatches: 8, Indels: 24
0.70 0.08 0.23
Matches are distributed among these distances:
3 3 0.04
4 8 0.11
5 40 0.55
6 16 0.22
7 6 0.08
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (5 bp):
TATTT
Found at i:101221320 original size:16 final size:15
Alignment explanation
Indices: 101221294--101221352 Score: 59
Period size: 14 Copynumber: 4.0 Consensus size: 15
101221284 AATCCTCCTA
101221294 TTTTA-TTTTATTTT
1 TTTTATTTTTATTTT
101221308 TTCTTATTTTTATTTT
1 TT-TTATTTTTATTTT
* * *
101221324 ATTT-TCTTTATTAT
1 TTTTATTTTTATTTT
*
101221338 TTTTATTTTTCTTTT
1 TTTTATTTTTATTTT
101221353 GATTTTTATT
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
14 13 0.37
15 12 0.34
16 10 0.29
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTATTTTTATTTT
Found at i:101221335 original size:30 final size:30
Alignment explanation
Indices: 101221300--101221358 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
101221290 CCTATTTTAT
*
101221300 TTTATTTTTTCTTATTTTTATTTT-ATTTTC
1 TTTATTATTT-TTATTTTTATTTTGATTTTC
*
101221330 TTTATTATTTTTATTTTTCTTTTGATTTT
1 TTTATTATTTTTATTTTTATTTTGATTTT
101221359 TATTTTCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (30 bp):
TTTATTATTTTTATTTTTATTTTGATTTTC
Found at i:101221341 original size:23 final size:21
Alignment explanation
Indices: 101221294--101221389 Score: 79
Period size: 23 Copynumber: 4.4 Consensus size: 21
101221284 AATCCTCCTA
*
101221294 TTTTATTTTATTTTTTCTTAT
1 TTTTATTTTATTTTTTATTAT
101221315 TTTTATTTTATTTTCTTTATTAT
1 TTTTATTTTA-TTT-TTTATTAT
* *
101221338 TTTTATTTTTCTTTTGATTTTTAT
1 TTTTA-TTTTATTTT--TTATTAT
* * *
101221362 TTTCATTTCA-ATTTTATTA-
1 TTTTATTTTATTTTTTATTAT
101221381 TTTTATTTT
1 TTTTATTTT
101221390 GAAAGACATC
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
19 7 0.12
20 5 0.08
21 10 0.17
22 6 0.10
23 18 0.30
24 14 0.23
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (21 bp):
TTTTATTTTATTTTTTATTAT
Found at i:101221343 original size:18 final size:17
Alignment explanation
Indices: 101221320--101221379 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
101221310 CTTATTTTTA
*
101221320 TTTTATTTTCTTTATTAT
1 TTTTATTTTCTTT-TGAT
101221338 TTTTATTTTTCTTTTGAT
1 TTTTA-TTTTCTTTTGAT
* * *
101221356 TTTTATTTTCATTTCAA
1 TTTTATTTTCTTTTGAT
101221373 TTTTATT
1 TTTTATT
101221380 ATTTTATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
17 16 0.43
18 13 0.35
19 8 0.22
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTTATTTTCTTTTGAT
Found at i:101221359 original size:7 final size:6
Alignment explanation
Indices: 101221294--101221369 Score: 63
Period size: 6 Copynumber: 13.3 Consensus size: 6
101221284 AATCCTCCTA
* *
101221294 TTTTA- TTTTA- TTTT-T TCTTAT TTTTA- TTTTAT TTTCT-T TATTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT TTTTAT
* * *
101221338 TTTTAT TTTTCT TTTGAT TTTTAT TTTCAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
101221370 CAATTTTATT
Statistics
Matches: 57, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
5 18 0.32
6 38 0.67
7 1 0.02
ACGTcount: A:0.14, C:0.05, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:101227465 original size:45 final size:45
Alignment explanation
Indices: 101227395--101227512 Score: 155
Period size: 45 Copynumber: 2.6 Consensus size: 45
101227385 CCGATGTCCT
* * * *
101227395 AGATATGGTCTTACACGTAACCACATATATCGATGCCAACGTCCC
1 AGATGTGGTCTTACACGAAAACACATATATCGATGCCAACATCCC
* * *
101227440 TGATGTGGTCTTACACGAAAACACATATATCGATGCCAGCATTCC
1 AGATGTGGTCTTACACGAAAACACATATATCGATGCCAACATCCC
* *
101227485 AGATGTGGTCTTGCATGAAAACACATAT
1 AGATGTGGTCTTACACGAAAACACATAT
101227513 CAAAATTCTA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
AGATGTGGTCTTACACGAAAACACATATATCGATGCCAACATCCC
Found at i:101229642 original size:40 final size:42
Alignment explanation
Indices: 101229558--101229652 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 42
101229548 AACGATCTCG
**
101229558 CACACTTAGTGCCTCATATATAGCCGAAGCTATTCCAATTCA
1 CACACTTAGTGCCTCATATATAGCCGAAGCTATTCCAAAACA
* **
101229600 CACACTTAGTG-CT-ATTTATAGCCGAAGCTATTTTAAAACA
1 CACACTTAGTGCCTCATATATAGCCGAAGCTATTCCAAAACA
**
101229640 CACAAATAGTGCC
1 CACACTTAGTGCC
101229653 AAACATAGTC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
40 31 0.69
41 3 0.07
42 11 0.24
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (42 bp):
CACACTTAGTGCCTCATATATAGCCGAAGCTATTCCAAAACA
Found at i:101239769 original size:6 final size:6
Alignment explanation
Indices: 101239758--101239786 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
101239748 AAGATAAACC
101239758 AGAAAA AGAAAA AGAAAA AGAAAA AGAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAA
101239787 TTATCCCTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:101241169 original size:14 final size:14
Alignment explanation
Indices: 101241135--101241179 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
101241125 GAACACTTGC
101241135 ATGTGAACCCCTTAT
1 ATGTGAACCCC-TAT
*
101241150 AGGTGAACCCCTAT
1 ATGTGAACCCCTAT
*
101241164 ATGTGAACCCCCAT
1 ATGTGAACCCCTAT
101241178 AT
1 AT
101241180 ATGCAAACCC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (14 bp):
ATGTGAACCCCTAT
Found at i:101241316 original size:22 final size:22
Alignment explanation
Indices: 101241282--101241366 Score: 91
Period size: 22 Copynumber: 3.8 Consensus size: 22
101241272 TCTATTGAAA
*
101241282 TATGCAAATCCTATATGTTATT
1 TATGCAAACCCTATATGTTATT
* * *
101241304 TATGCGAACCCTACATG-TACTAA
1 TATGCAAACCCTATATGTTA-T-T
*
101241327 TATGCAAACCCTATAAGTTATT
1 TATGCAAACCCTATATGTTATT
*
101241349 TATGCAAACCCTACATGT
1 TATGCAAACCCTATATGT
101241367 GGTAATATAC
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
21 2 0.04
22 31 0.62
23 15 0.30
24 2 0.04
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (22 bp):
TATGCAAACCCTATATGTTATT
Found at i:101241331 original size:45 final size:45
Alignment explanation
Indices: 101241280--101241406 Score: 164
Period size: 45 Copynumber: 2.8 Consensus size: 45
101241270 TATCTATTGA
*
101241280 AATATGCAAATCCTATATGTTATTTATGCGAACCCTACATGTACT
1 AATATGCAAACCCTATATGTTATTTATGCGAACCCTACATGTACT
* * **
101241325 AATATGCAAACCCTATAAGTTATTTATGCAAACCCTACATGTGGT
1 AATATGCAAACCCTATATGTTATTTATGCGAACCCTACATGTACT
* * * * *
101241370 AATATACGAGCCTTATATGTCATTTATGCGAACCCTA
1 AATATGCAAACCCTATATGTTATTTATGCGAACCCTA
101241407 ATTGTTTATC
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (45 bp):
AATATGCAAACCCTATATGTTATTTATGCGAACCCTACATGTACT
Found at i:101245481 original size:14 final size:13
Alignment explanation
Indices: 101245461--101245497 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
101245451 AATATTTGAC
101245461 TTGTTCTTAATTA
1 TTGTTCTTAATTA
101245474 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
101245488 TTGTT-TTAAT
1 TTGTTCTTAAT
101245498 ATTCCAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:101248062 original size:13 final size:13
Alignment explanation
Indices: 101248030--101248070 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
101248020 ATATATTAAT
*
101248030 CCAAGTACCCAAC
1 CCAATTACCCAAC
101248043 CC-A--ACCCAAC
1 CCAATTACCCAAC
101248053 CCAATTACCCAAC
1 CCAATTACCCAAC
101248066 CCAAT
1 CCAAT
101248071 CATAAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 9 0.36
11 1 0.04
12 1 0.04
13 14 0.56
ACGTcount: A:0.39, C:0.49, G:0.02, T:0.10
Consensus pattern (13 bp):
CCAATTACCCAAC
Found at i:101248136 original size:7 final size:6
Alignment explanation
Indices: 101248095--101248135 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
101248085 ATAATTTAAT
*
101248095 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
101248136 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:101248136 original size:20 final size:20
Alignment explanation
Indices: 101248098--101248137 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
101248088 ATTTAATAAA
**
101248098 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
101248118 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
101248138 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:101248173 original size:9 final size:9
Alignment explanation
Indices: 101248155--101248222 Score: 91
Period size: 9 Copynumber: 7.6 Consensus size: 9
101248145 TTTATACAAA
*
101248155 TAATTTGGT
1 TAATTCGGT
101248164 TAATTCGGT
1 TAATTCGGT
* *
101248173 TAATTTGGG
1 TAATTCGGT
*
101248182 TAATTCGGG
1 TAATTCGGT
101248191 TAATTCGGT
1 TAATTCGGT
*
101248200 TAATTCGAT
1 TAATTCGGT
101248209 TAATTCGGT
1 TAATTCGGT
101248218 TAATT
1 TAATT
101248223 TGATTAATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:101248178 original size:18 final size:18
Alignment explanation
Indices: 101248155--101248232 Score: 93
Period size: 18 Copynumber: 4.3 Consensus size: 18
101248145 TTTATACAAA
*
101248155 TAATTTGGTTAATTCGGT
1 TAATTTGGTTAATTCGAT
* **
101248173 TAATTTGGGTAATTCGGG
1 TAATTTGGTTAATTCGAT
*
101248191 TAATTCGGTTAATTCGAT
1 TAATTTGGTTAATTCGAT
* *
101248209 TAATTCGGTTAATTTGAT
1 TAATTTGGTTAATTCGAT
101248227 TAATTT
1 TAATTT
101248233 TATATTTATT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.26, C:0.06, G:0.21, T:0.47
Consensus pattern (18 bp):
TAATTTGGTTAATTCGAT
Found at i:101248194 original size:27 final size:27
Alignment explanation
Indices: 101248155--101248232 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
101248145 TTTATACAAA
* *
101248155 TAATTTGGTTAATTCGGTTAATTTGGG
1 TAATTCGGTTAATTCGGTTAATTTGAG
* * *
101248182 TAATTCGGGTAATTCGGTTAATTCGAT
1 TAATTCGGTTAATTCGGTTAATTTGAG
* *
101248209 TAATTCGGTTAATTTGATTAATTT
1 TAATTCGGTTAATTCGGTTAATTT
101248233 TATATTTATT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.26, C:0.06, G:0.21, T:0.47
Consensus pattern (27 bp):
TAATTCGGTTAATTCGGTTAATTTGAG
Found at i:101248232 original size:9 final size:9
Alignment explanation
Indices: 101248163--101248231 Score: 57
Period size: 9 Copynumber: 7.7 Consensus size: 9
101248153 AATAATTTGG
*
101248163 TTAATTCGG
1 TTAATTCGA
* *
101248172 TTAATTTGG
1 TTAATTCGA
* *
101248181 GTAATTCGG
1 TTAATTCGA
* *
101248190 GTAATTCGG
1 TTAATTCGA
101248199 TTAATTCGA
1 TTAATTCGA
*
101248208 TTAATTCGG
1 TTAATTCGA
*
101248217 TTAATTTGA
1 TTAATTCGA
101248226 TTAATT
1 TTAATT
101248232 TTATATTTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.46
Consensus pattern (9 bp):
TTAATTCGA
Found at i:101249695 original size:20 final size:20
Alignment explanation
Indices: 101249670--101249713 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
101249660 CACTTAGTGC
*
101249670 ATAAATGATTAGCTGAAGCT
1 ATAAATGATTAGCCGAAGCT
*
101249690 ATAAATGATTAGCCGGAGCT
1 ATAAATGATTAGCCGAAGCT
101249710 ATAA
1 ATAA
101249714 CGGCAGTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
ATAAATGATTAGCCGAAGCT
Found at i:101250861 original size:41 final size:41
Alignment explanation
Indices: 101250804--101250882 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
101250794 TAACAAATAG
101250804 AATGCAACTTTTGCATTTTACACGATTTAGTCATTTTTTAA
1 AATGCAACTTTTGCATTTTACACGATTTAGTCATTTTTTAA
*
101250845 AATGCAACTTTTGCATTTTACGCGATTTAGTCATTTTT
1 AATGCAACTTTTGCATTTTACACGATTTAGTCATTTTT
101250883 CTCAAATTGG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.47
Consensus pattern (41 bp):
AATGCAACTTTTGCATTTTACACGATTTAGTCATTTTTTAA
Found at i:101252958 original size:23 final size:23
Alignment explanation
Indices: 101252932--101252985 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
101252922 TATTGCATCA
*
101252932 CATATCATATACC-AAAATCAAAC
1 CATATCATA-ACCAAAAACCAAAC
*
101252955 CATAATCATAACCAAAAACCAAGC
1 CAT-ATCATAACCAAAAACCAAAC
101252979 CATATCA
1 CATATCA
101252986 CATGGCCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.52, C:0.28, G:0.02, T:0.19
Consensus pattern (23 bp):
CATATCATAACCAAAAACCAAAC
Found at i:101256775 original size:40 final size:40
Alignment explanation
Indices: 101256731--101256848 Score: 184
Period size: 40 Copynumber: 3.0 Consensus size: 40
101256721 TCGATATATT
101256731 GTATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAAA
1 GTATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAAA
* **
101256771 GTATATCTGGGTTAAATCCCGTAGGCTTCATGCTGGTAAA
1 GTATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAAA
*
101256811 GTATATCCGGGTTAAATCCCCCAGGCTT-AGTGCTGGTA
1 GTATATCCGGGTTAAATCCCACAGGCTTCA-TGCTGGTA
101256849 CTATATCCGG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (40 bp):
GTATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAAA
Found at i:101256871 original size:80 final size:79
Alignment explanation
Indices: 101256731--101256878 Score: 210
Period size: 80 Copynumber: 1.8 Consensus size: 79
101256721 TCGATATATT
* * *
101256731 GTATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAAAGTATATCTGGGTTAAATCCCGTAGG
1 GTATATCCGGGTTAAATCCCACAGGCTTCATGCTGGT-AACTATATCCGGGCTAAATCCCGTAGG
101256796 CTTCATGCTGGTAAA
65 CTTCATGCTGGTAAA
*
101256811 GTATATCCGGGTTAAATCCCCCAGGCTT-AGTGCTGGT-ACTATATCCGGGCCTAAAGTCCCGTA
1 GTATATCCGGGTTAAATCCCACAGGCTTCA-TGCTGGTAACTATATCCGGG-CTAAA-TCCCGTA
101256874 GGCTT
63 GGCTT
101256879 TGTGCTAGTA
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
78 10 0.16
79 5 0.08
80 46 0.75
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (79 bp):
GTATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAACTATATCCGGGCTAAATCCCGTAGGC
TTCATGCTGGTAAA
Found at i:101256877 original size:40 final size:39
Alignment explanation
Indices: 101256732--101256891 Score: 137
Period size: 40 Copynumber: 4.0 Consensus size: 39
101256722 CGATATATTG
* ** *
101256732 TATATCCGGGTTAAATCCCACAGGCTTCA-TGCTGGTAAAG
1 TATATCCGGGCTAAATCCCGTAGGCTT-AGTGCTGGT-AAC
* * *
101256772 TATATCTGGGTTAAATCCCGTAGGCTTCA-TGCTGGTAAAG
1 TATATCCGGGCTAAATCCCGTAGGCTT-AGTGCTGGT-AAC
* **
101256812 TATATCCGGGTTAAATCCCCCAGGCTTAGTGCTGGT-AC
1 TATATCCGGGCTAAATCCCGTAGGCTTAGTGCTGGTAAC
* *
101256850 TATATCCGGGCCTAAAGTCCCGTAGGCTTTGTGCTAGTAAC
1 TATATCCGGG-CTAAA-TCCCGTAGGCTTAGTGCTGGTAAC
101256891 T
1 T
101256892 GGATTCGGGT
Statistics
Matches: 104, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
38 11 0.11
39 5 0.05
40 85 0.82
41 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAATCCCGTAGGCTTAGTGCTGGTAAC
Found at i:101265150 original size:36 final size:37
Alignment explanation
Indices: 101265103--101265173 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
101265093 GCAAAGCCCC
101265103 AGTTAAGTCCAA-TTCAAAAAAGGCCACTTTTGAGCA
1 AGTTAAGTCCAATTTCAAAAAAGGCCACTTTTGAGCA
** *
101265139 AGTTAAGTCCAATTTGGAAAAAGGGCACTTTTGAG
1 AGTTAAGTCCAATTTCAAAAAAGGCCACTTTTGAG
101265174 GGCTTCTACT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
36 12 0.39
37 19 0.61
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (37 bp):
AGTTAAGTCCAATTTCAAAAAAGGCCACTTTTGAGCA
Found at i:101266646 original size:28 final size:29
Alignment explanation
Indices: 101266601--101266656 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 29
101266591 TTCTTAATAC
*
101266601 ATATAATCATTCAAAATT-ATTCAAAAGA
1 ATATAATCAATCAAAATTAATTCAAAAGA
101266629 ATATAATCAAT-AATAATTCAATTCAAAA
1 ATATAATCAATCAA-AATT-AATTCAAAA
101266657 TACATTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 2 0.08
28 14 0.58
30 8 0.33
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.32
Consensus pattern (29 bp):
ATATAATCAATCAAAATTAATTCAAAAGA
Found at i:101270706 original size:26 final size:26
Alignment explanation
Indices: 101270675--101270782 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
101270665 TGAAATGCCC
* *
101270675 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
101270701 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
101270727 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
101270753 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
101270779 ATCA
1 ATCA
101270783 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:101273586 original size:23 final size:23
Alignment explanation
Indices: 101273559--101273647 Score: 97
Period size: 23 Copynumber: 3.9 Consensus size: 23
101273549 AACATCAGGC
101273559 ATGAACAATGAAGATTCTCTGCG
1 ATGAACAATGAAGATTCTCTGCG
** * * *
101273582 ATGAACTGTGAAAATTTTCTGCA
1 ATGAACAATGAAGATTCTCTGCG
* *
101273605 ATGAACAATGAAGATTCTTTACG
1 ATGAACAATGAAGATTCTCTGCG
* *
101273628 ATTAACATTGAAGATTCTCT
1 ATGAACAATGAAGATTCTCT
101273648 AAAAAAATAC
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.33
Consensus pattern (23 bp):
ATGAACAATGAAGATTCTCTGCG
Found at i:101273977 original size:15 final size:15
Alignment explanation
Indices: 101273948--101273995 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
101273938 AACACAAATC
*
101273948 AAATTTAAGTTTTCA
1 AAATTTAATTTTTCA
* *
101273963 AAGTTTTATTTTTCA
1 AAATTTAATTTTTCA
*
101273978 AAATTTAATTTTTGA
1 AAATTTAATTTTTCA
101273993 AAA
1 AAA
101273996 ATTTTTGCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (15 bp):
AAATTTAATTTTTCA
Found at i:101277217 original size:45 final size:45
Alignment explanation
Indices: 101277166--101277255 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
101277156 TGATGAAGAA
*
101277166 GTTTCAACCCAAGAACTTCTATAGCAACAACATTCAATTGCATAT
1 GTTTCAACCCAAGAACTTCTACAGCAACAACATTCAATTGCATAT
*
101277211 GTTTCAACCCAAGAACTTCTACAGCAACAAGATTCAATTGCATAT
1 GTTTCAACCCAAGAACTTCTACAGCAACAACATTCAATTGCATAT
101277256 AGGAGGCCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (45 bp):
GTTTCAACCCAAGAACTTCTACAGCAACAACATTCAATTGCATAT
Found at i:101280906 original size:6 final size:6
Alignment explanation
Indices: 101280883--101280986 Score: 77
Period size: 6 Copynumber: 17.0 Consensus size: 6
101280873 TAACCCATTA
* * * *
101280883 CAGAAT AAGAAA CTAGAAT CAGAAT CATAAT CATAAT CAGAAT CAGAAT
1 CAGAAT CAGAAT C-AGAAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT
* * * * *
101280932 CAG-GT GACAGAAT CAGAAT TAGAAT CAGTAT TAGTAA- CAGAAT CAAAAT
1 CAGAAT --CAGAAT CAGAAT CAGAAT CAGAAT CAG-AAT CAGAAT CAGAAT
101280981 CAGAAT
1 CAGAAT
101280987 GTGAATGCAA
Statistics
Matches: 76, Mismatches: 16, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
5 3 0.04
6 63 0.83
7 9 0.12
8 1 0.01
ACGTcount: A:0.50, C:0.13, G:0.15, T:0.21
Consensus pattern (6 bp):
CAGAAT
Found at i:101281252 original size:27 final size:26
Alignment explanation
Indices: 101281205--101281255 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
101281195 CGAGGCTGCT
*
101281205 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
101281231 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
101281256 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:101281521 original size:27 final size:28
Alignment explanation
Indices: 101281491--101281603 Score: 81
Period size: 27 Copynumber: 4.2 Consensus size: 28
101281481 AACACCCTAG
*
101281491 GGGTAAAAT-GGTAATTTTACCCCACAA
1 GGGTAAAATCGGTAATTCTACCCCACAA
** *
101281518 GGGT-ATCTCGGTAATTCTACCCTACAA
1 GGGTAAAATCGGTAATTCTACCCCACAA
** * * *
101281545 GGGT-ATTTCAGTAATTCTACCCTACAG
1 GGGTAAAATCGGTAATTCTACCCCACAA
** * *
101281572 GGGT-ATTTCGGTATTTCTACCCTACAA
1 GGGTAAAATCGGTAATTCTACCCCACAA
101281599 GGGTA
1 GGGTA
101281604 TTTCAGTATT
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 2 0.03
27 72 0.97
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (28 bp):
GGGTAAAATCGGTAATTCTACCCCACAA
Found at i:101281604 original size:27 final size:27
Alignment explanation
Indices: 101281504--101281638 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
101281494 TAAAATGGTA
* * *
101281504 ATTT-TACCCCACAAGGGTATCTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
*
101281530 AATTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* * *
101281557 AATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
101281584 ATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* *
101281611 ATTTCTACCCTAAAAGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
101281638 A
1 A
101281639 ATTTTATAAA
Statistics
Matches: 97, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 3 0.03
27 94 0.97
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCAGT
Found at i:101281655 original size:27 final size:28
Alignment explanation
Indices: 101281626--101281891 Score: 217
Period size: 27 Copynumber: 9.8 Consensus size: 28
101281616 TACCCTAAAA
*
101281626 GGGTATTTTAGTAATTTTATAAATCGA-
1 GGGTATTTTAGTAATTTTACAAATCGAG
***** * * *
101281653 GGGTAAAACGGTAATTCTATAAAT-TAG
1 GGGTATTTTAGTAATTTTACAAATCGAG
* * *
101281680 GGGTACTTTGGTAATTTTACAAGTCGA-
1 GGGTATTTTAGTAATTTTACAAATCGAG
* * * **
101281707 GGGTATTTCAATAATTTTATAGGTCGA-
1 GGGTATTTTAGTAATTTTACAAATCGAG
* *
101281734 GGGTATTTTAGTAATTTCACAAAT-TAG
1 GGGTATTTTAGTAATTTTACAAATCGAG
*
101281761 GGGTATTTTAGTAATTTCACAAATC-AG
1 GGGTATTTTAGTAATTTTACAAATCGAG
* *
101281788 GGGTATTTTTGTAATTTTACAAA-CCAG
1 GGGTATTTTAGTAATTTTACAAATCGAG
* *
101281815 GGGTATTTTGGTAATTTTACAAA-CCAG
1 GGGTATTTTAGTAATTTTACAAATCGAG
* * * *
101281842 GGGTATTTTGGTAATTTTATAAA-CAAA
1 GGGTATTTTAGTAATTTTACAAATCGAG
101281869 GGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTAGTAATTTTACAAA
101281892 CAAATGGTAT
Statistics
Matches: 198, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.02
27 194 0.98
28 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (28 bp):
GGGTATTTTAGTAATTTTACAAATCGAG
Found at i:101281665 original size:81 final size:79
Alignment explanation
Indices: 101281489--101281671 Score: 181
Period size: 81 Copynumber: 2.3 Consensus size: 79
101281479 TTAACACCCT
* * *
101281489 AGGGGTAAAATGGTAATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTT
1 AGGGGTAAAACGGT-ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAAAAGGGTATTT
*
101281553 CAGTAATTCTACCCTAC
65 CAGTAATTCTA--CTAA
*** * * * *
101281570 AGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTAAAAGGGTATTTT
1 AGGGGTAAAACGGTATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAAAAGGGTATTTC
*
101281635 AGTAATTTTA-TAA
66 AGTAATTCTACTAA
*
101281648 ATCGAGGGTAAAACGGTAATTCTA
1 A--G-GGGTAAAACGGTATTTCTA
101281672 TAAATTAGGG
Statistics
Matches: 82, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
78 3 0.04
80 5 0.06
81 74 0.90
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (79 bp):
AGGGGTAAAACGGTATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAAAAGGGTATTTC
AGTAATTCTACTAA
Found at i:101281710 original size:81 final size:78
Alignment explanation
Indices: 101281625--101281912 Score: 256
Period size: 81 Copynumber: 3.6 Consensus size: 78
101281615 CTACCCTAAA
**** * *
101281625 AGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATTAGGGGTACTTTG
1 AGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATT-TACAAATTAGGGGTATTTTG
101281690 GTAATTTTACAAGTC
65 GTAATTTTACAA-TC
* * ** *
101281705 GAGGGTATTTCAATAATTTTATAGGTCGAGGGTATTTTAGTAATTTCACAAATTAGGGGTATTTT
1 -AGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTT-ACAAATTAGGGGTATTTT
* *
101281770 AGTAATTTCACAAATC
64 GGTAATTTTAC-AATC
* * * **
101281786 AGGGGTATTTTTGTAATTTTACAAA-CCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 A-GGGTATTTTAGTAATTTTATAAATCGA-GGGTATTTTGGTAA-TTTACAAATTAGGGGTATTT
* *
101281850 TGGTAATTTTATAAAC
63 TGGTAATTTTACAATC
* * *
101281866 AAAGGGTATTTTAGTAATTTTACAAA-CAAATGGTATTTTGGTAATTT
1 --AGGGTATTTTAGTAATTTTATAAATC-GAGGGTATTTTGGTAATTT
101281913 GGTAAACTAA
Statistics
Matches: 169, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
80 10 0.06
81 152 0.90
82 7 0.04
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.40
Consensus pattern (78 bp):
AGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTACAAATTAGGGGTATTTTGG
TAATTTTACAATC
Found at i:101281892 original size:27 final size:27
Alignment explanation
Indices: 101281734--101281912 Score: 216
Period size: 27 Copynumber: 6.6 Consensus size: 27
101281724 TATAGGTCGA
* **
101281734 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTAGTAATTTTACAAACAAG
*
101281761 GGGTATTTTAGTAATTTCACAAATC-AG
1 GGGTATTTTAGTAATTTTACAAA-CAAG
* *
101281788 GGGTATTTTTGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACAAG
* *
101281815 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACAAG
* * *
101281842 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACAAG
*
101281869 GGGTATTTTAGTAATTTTACAAACAAA
1 GGGTATTTTAGTAATTTTACAAACAAG
* *
101281896 TGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTT
101281913 GGTAAACTAA
Statistics
Matches: 139, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
26 1 0.01
27 138 0.99
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACAAG
Found at i:101283875 original size:18 final size:18
Alignment explanation
Indices: 101283842--101283893 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
101283832 GGCTTTAACC
101283842 CATTA-CAGAATAAGAAA
1 CATTATCAGAATAAGAAA
*
101283859 CATTATCAGAACT-AGAAT
1 CATTATCAGAA-TAAGAAA
* *
101283877 CATAATCAGAATCAGAA
1 CATTATCAGAATAAGAA
101283894 TCAGAATCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 6 0.20
18 23 0.77
19 1 0.03
ACGTcount: A:0.52, C:0.15, G:0.12, T:0.21
Consensus pattern (18 bp):
CATTATCAGAATAAGAAA
Found at i:101283883 original size:6 final size:6
Alignment explanation
Indices: 101283863--101283962 Score: 98
Period size: 6 Copynumber: 16.3 Consensus size: 6
101283853 AAGAAACATT
*
101283863 ATCAGA A-CTAGA ATCATA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
101283910 GTGACAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
101283961 AT
1 AT
101283963 GTGAATGCAA
Statistics
Matches: 78, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
5 4 0.05
6 65 0.83
7 7 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:101283921 original size:31 final size:31
Alignment explanation
Indices: 101283863--101283962 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 31
101283853 AAGAAACATT
101283863 ATCAGAA-CTAGAATCA--TAATCAGAATCAGA
1 ATCAGAATC-AGAATCAGGTAA-CAGAATCAGA
*
101283893 ATCAGAATCAGAATCAGGTGACAGAATCAGA
1 ATCAGAATCAGAATCAGGTAACAGAATCAGA
* *
101283924 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGAATCAGGTAACAGAATCAGA
101283955 ATCAGAAT
1 ATCAGAAT
101283963 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
30 14 0.22
31 47 0.75
32 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGGTAACAGAATCAGA
Found at i:101283949 original size:25 final size:24
Alignment explanation
Indices: 101283872--101283935 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 24
101283862 TATCAGAACT
* *
101283872 AGAATCATAATCAG-AATCAGAATC
1 AGAATCAGAATCAGTGA-CAGAATC
101283896 AGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCA-GTGACAGAATC
101283921 AGAATCAGAATCAGT
1 AGAATCAGAATCAGT
101283936 ATCAGGTAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
24 14 0.39
25 21 0.58
26 1 0.03
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (24 bp):
AGAATCAGAATCAGTGACAGAATC
Found at i:101284130 original size:27 final size:26
Alignment explanation
Indices: 101284082--101284141 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
101284072 GCGAGGCTGC
*
101284082 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
101284109 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
101284135 CAAATAT
1 CAGATAT
101284142 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:101284228 original size:27 final size:26
Alignment explanation
Indices: 101284181--101284231 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
101284171 CGAGGCTGCT
*
101284181 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
101284207 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
101284232 TTGTAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:101284537 original size:27 final size:26
Alignment explanation
Indices: 101284507--101284587 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 26
101284497 TATCTCGGTA
101284507 ATTCTACCCTACAGGGGTATTTTAGT
1 ATTCTACCCTACAGGGGTATTTTAGT
* *
101284533 CATTCTACCTTACAGGGGTATTTCAGT
1 -ATTCTACCCTACAGGGGTATTTTAGT
*
101284560 ATTTCTACCCTACAAGGGTATTTTAGT
1 A-TTCTACCCTACAGGGGTATTTTAGT
101284587 A
1 A
101284588 ATTTTATAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.02
27 47 0.98
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (26 bp):
ATTCTACCCTACAGGGGTATTTTAGT
Found at i:101284604 original size:27 final size:26
Alignment explanation
Indices: 101284571--101284888 Score: 267
Period size: 27 Copynumber: 11.8 Consensus size: 26
101284561 TTTCTACCCT
* *
101284571 ACAAGGGTATTTTAGTAATTTTATAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* **** * *
101284597 ATCGAGGGTAAAACGGTAATTCTATAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
101284624 ATCAAGGGTACTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* * *** *
101284651 GTCGAGGGTATTTCAATAATTTTACAGG
1 -ACAAGGGTATTTTGGTAATTTTACA-A
* * * * *
101284679 TCGATGGTATTTTAGTAATTTCACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
*
101284705 ATCAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
101284732 ACTAGGGGTATTTTGATAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
101284759 ACCAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
101284786 ACCAAGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
101284813 ACCAGGGGTATTTTGGTAATTTTATAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
101284840 ACAAAGCGTATTTTAGTAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
101284867 ACCAGGGGTATTTTGGTAATTT
1 A-CAAGGGTATTTTGGTAATTT
101284889 GGTAAACTAA
Statistics
Matches: 240, Mismatches: 44, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
26 3 0.01
27 235 0.98
28 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:101284659 original size:81 final size:80
Alignment explanation
Indices: 101284575--101284888 Score: 294
Period size: 81 Copynumber: 3.9 Consensus size: 80
101284565 TACCCTACAA
* **** * *
101284575 GGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTACTTTGG
1 GGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATT-TACAAATCAAGGGTATTTTGG
**
101284640 TAATTTTACAAGTC-G
65 TAATTTTACAAACCAG
* * ** * * *
101284655 AGGGTATTTCAATAATTTTACAGGTCGATGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTG
1 -GGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTT-ACAAATCAAGGGTATTTTG
*
101284720 GTAATTTTACAAACTAG
64 GTAATTTTACAAACCAG
* *
101284737 GGGTATTTT-GATAATTTTACAAA-CCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
1 GGGTATTTTAG-TAATTTTACAAATCGA-GGGTATTTTGGTAA-TTTACAAATCAAGGGTATTTT
101284800 GGTAATTTTACAAACCAG
63 GGTAATTTTACAAACCAG
* * * * * * *
101284818 GGGTATTTTGGTAATTTTATAAA-CAAAGCGTATTTTAGTAATTTTACAAACCAGGGGTATTTTG
1 GGGTATTTTAGTAATTTTACAAATC-GAGGGTATTTTGGTAA-TTTACAAATCAAGGGTATTTTG
101284882 GTAATTT
64 GTAATTT
101284889 GGTAAACTAA
Statistics
Matches: 194, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
80 3 0.02
81 185 0.95
82 6 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
GGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTACAAATCAAGGGTATTTTGGT
AATTTTACAAACCAG
Found at i:101284725 original size:54 final size:53
Alignment explanation
Indices: 101284571--101284888 Score: 318
Period size: 54 Copynumber: 5.9 Consensus size: 53
101284561 TTTCTACCCT
* * **** * *
101284571 ACAAGGGTATTTTAGTAATTTTATAAATC-GAGGGTAAAACGGTAATTCTATAA
1 ACAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAA
* * ** *** *
101284624 ATCAAGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTACAGG
1 A-CAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACA-A
* * * * *
101284679 TCGATGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAA
1 ACAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAA
*
101284732 ACTAGGGGTATTTT-GATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAA
1 AC-AAGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAA
* *
101284786 ACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAA
1 A-CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAA
*
101284840 ACAAAGCGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AC-AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
101284889 GGTAAACTAA
Statistics
Matches: 224, Mismatches: 33, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
53 4 0.02
54 217 0.97
55 3 0.01
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (53 bp):
ACAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAA
Found at i:101284895 original size:27 final size:27
Alignment explanation
Indices: 101284684--101284888 Score: 311
Period size: 27 Copynumber: 7.6 Consensus size: 27
101284674 ACAGGTCGAT
* * *
101284684 GGTATTTTAGTAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
101284711 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
101284738 GGTATTTTGATAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
101284765 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
101284792 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
101284819 GGTATTTTGGTAATTTTATAAACAAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
* *
101284846 CGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
101284873 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
101284889 GGTAAACTAA
Statistics
Matches: 159, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:101287601 original size:25 final size:24
Alignment explanation
Indices: 101287567--101287624 Score: 98
Period size: 25 Copynumber: 2.4 Consensus size: 24
101287557 TCAGAATAGG
101287567 TCTGTTGGTCTAGTGGTTAAGTGA
1 TCTGTTGGTCTAGTGGTTAAGTGA
101287591 TTCTGTTGGTCTAGTGGTTAAGTGA
1 -TCTGTTGGTCTAGTGGTTAAGTGA
*
101287616 TGTGTTGGT
1 TCTGTTGGT
101287625 AAGCTGGTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 8 0.25
25 24 0.75
ACGTcount: A:0.14, C:0.07, G:0.34, T:0.45
Consensus pattern (24 bp):
TCTGTTGGTCTAGTGGTTAAGTGA
Found at i:101287632 original size:24 final size:25
Alignment explanation
Indices: 101287567--101287632 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
101287557 TCAGAATAGG
*
101287567 TCTGTTGGTCTAGTGGTTAAGTGAT
1 TCTGTTGGTCAAGTGGTTAAGTGAT
*
101287592 TCTGTTGGTCTAGTGGTTAAGTGA-
1 TCTGTTGGTCAAGTGGTTAAGTGAT
*
101287616 TGTGTTGGT-AAGCTGGT
1 TCTGTTGGTCAAG-TGGT
101287633 GGTCTTGTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 2 0.05
24 12 0.32
25 24 0.63
ACGTcount: A:0.15, C:0.08, G:0.35, T:0.42
Consensus pattern (25 bp):
TCTGTTGGTCAAGTGGTTAAGTGAT
Found at i:101308682 original size:22 final size:23
Alignment explanation
Indices: 101308652--101308705 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 23
101308642 CTGAGGGGAA
*
101308652 TGGCGATTT-ACCGCATTTTTAC
1 TGGCAATTTGACCGCATTTTTAC
***
101308674 TGGCAATTTGTTTGCATTTTTAC
1 TGGCAATTTGACCGCATTTTTAC
*
101308697 TGGAAATTT
1 TGGCAATTT
101308706 TTTTGCATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.46
Consensus pattern (23 bp):
TGGCAATTTGACCGCATTTTTAC
Found at i:101308694 original size:23 final size:23
Alignment explanation
Indices: 101308664--101308713 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
101308654 GCGATTTACC
*
101308664 GCATTTTTACTGGCAATTTGTTT
1 GCATTTTTACTGGAAATTTGTTT
*
101308687 GCATTTTTACTGGAAATTTTTTT
1 GCATTTTTACTGGAAATTTGTTT
101308710 GCAT
1 GCAT
101308714 ATTGTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.16, T:0.52
Consensus pattern (23 bp):
GCATTTTTACTGGAAATTTGTTT
Found at i:101314954 original size:17 final size:16
Alignment explanation
Indices: 101314934--101314978 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
101314924 TATATAATGC
101314934 TATATAATATCTTATAG
1 TATATAATATCTT-TAG
*
101314951 TATATAATATATTTAG
1 TATATAATATCTTTAG
*
101314967 TTTATATATATC
1 TATATA-ATATC
101314979 AATGATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (16 bp):
TATATAATATCTTTAG
Found at i:101315069 original size:17 final size:18
Alignment explanation
Indices: 101315047--101315118 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 18
101315037 ATAATAATAG
101315047 TTATATATA-ATATTACA
1 TTATATATATATATTACA
101315064 TTATATATTATATATTACA
1 TTATATA-TATATATTACA
* *
101315083 TAATAT-TATATATTATATA
1 TTATATATATATA-T-TACA
101315102 TTATATATTATATATTA
1 TTATATA-TATATATTA
101315119 TACATATTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
17 13 0.28
18 3 0.07
19 23 0.50
20 1 0.02
21 6 0.13
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TTATATATATATATTACA
Found at i:101315073 original size:7 final size:7
Alignment explanation
Indices: 101315063--101315120 Score: 89
Period size: 7 Copynumber: 7.9 Consensus size: 7
101315053 ATAATATTAC
101315063 ATTATAT
1 ATTATAT
101315070 ATTATAT
1 ATTATAT
101315077 ATTACATAAT
1 ATT--AT-AT
101315087 ATTATAT
1 ATTATAT
101315094 ATTATAT
1 ATTATAT
101315101 ATTATAT
1 ATTATAT
101315108 ATTATAT
1 ATTATAT
101315115 ATTATA
1 ATTATA
101315121 CATATTATTG
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
7 39 0.81
8 2 0.04
9 2 0.04
10 5 0.10
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (7 bp):
ATTATAT
Found at i:101315098 original size:31 final size:30
Alignment explanation
Indices: 101315063--101315128 Score: 96
Period size: 31 Copynumber: 2.2 Consensus size: 30
101315053 ATAATATTAC
*
101315063 ATTATATATTATATATTACATAATATTATAT
1 ATTATATATTATATATTACATAATA-TACAT
* *
101315094 ATTATATATTATATATTATATATTATACAT
1 ATTATATATTATATATTACATAATATACAT
101315124 ATTAT
1 ATTAT
101315129 TGTTTATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 9 0.28
31 23 0.72
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (30 bp):
ATTATATATTATATATTACATAATATACAT
Found at i:101315120 original size:19 final size:19
Alignment explanation
Indices: 101315047--101315118 Score: 89
Period size: 17 Copynumber: 3.9 Consensus size: 19
101315037 ATAATAATAG
101315047 TTATATA-TA-ATATTACA
1 TTATATATTATATATTACA
101315064 TTATATATTATATATTACA
1 TTATATATTATATATTACA
*
101315083 -TA-ATATTATATATTATATA
1 TTATATATTATATA-T-TACA
101315102 TTATATATTATATATTA
1 TTATATATTATATATTA
101315119 TACATATTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
17 17 0.35
18 5 0.10
19 13 0.27
20 3 0.06
21 10 0.21
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
TTATATATTATATATTACA
Found at i:101315129 original size:19 final size:21
Alignment explanation
Indices: 101315050--101315123 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
101315040 ATAATAGTTA
*
101315050 TATATAATATTACATTATATAT
1 TATATATTA-TACATTATATAT
101315072 TATATA-T-TACA-TA-ATAT
1 TATATATTATACATTATATAT
*
101315089 TATATATTATATATTATATAT
1 TATATATTATACATTATATAT
101315110 TATATATTATACAT
1 TATATATTATACAT
101315124 ATTATTGTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
17 10 0.22
18 3 0.07
19 7 0.15
20 2 0.04
21 18 0.39
22 6 0.13
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (21 bp):
TATATATTATACATTATATAT
Found at i:101317144 original size:26 final size:26
Alignment explanation
Indices: 101317115--101317222 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
101317105 TGGTACAAAT
101317115 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
101317141 TGATAATGGATTTGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
101317167 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
101317193 TGATAATGGTTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101317219 TGAT
1 TGAT
101317223 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:101318888 original size:27 final size:26
Alignment explanation
Indices: 101318846--101318986 Score: 156
Period size: 27 Copynumber: 5.2 Consensus size: 26
101318836 AGGAAGCGTC
*
101318846 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
101318873 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
101318900 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
101318927 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* * *
101318954 CTGGTGGCTCTGTCACAATATCTATAT
1 CTGGTGGCTCTGCCACATTATCT-GAT
101318981 CTGGTG
1 CTGGTG
101318987 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 9 0.09
27 85 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:101318928 original size:54 final size:54
Alignment explanation
Indices: 101318846--101318976 Score: 210
Period size: 54 Copynumber: 2.4 Consensus size: 54
101318836 AGGAAGCGTC
*
101318846 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTACCACATATATCTGTT
* *
101318900 CTGGTGGCTATGCCACGATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTACCACATATATCTGTT
* *
101318954 CTGGTGGCTCTGTCACAA-TATCT
1 CTGGTGGCTATGCCACAATTATCT
101318977 ATATCTGGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 5 0.07
54 66 0.93
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTACCACATATATCTGTT
Found at i:101318995 original size:27 final size:26
Alignment explanation
Indices: 101318859--101319003 Score: 80
Period size: 27 Copynumber: 5.4 Consensus size: 26
101318849 GTGGCTATGC
* **
101318859 CACAATTATCTGA-TCTGGTGGCTCTAC
1 CACAA-TATCT-ATTCTGGTGACTCTGT
* * * *
101318886 CACATATATCTGTTCTGGTGGCTATGC
1 CACA-ATATCTATTCTGGTGACTCTGT
* * * *
101318913 CACGATTATCTGA-TCTAGTGGCTCTGC
1 CAC-AATATCT-ATTCTGGTGACTCTGT
* *
101318940 CACATATATCTGTTCTGGTGGCTCTGT
1 CACA-ATATCTATTCTGGTGACTCTGT
101318967 CACAATATCTATATCTGGTGACT-TCGT
1 CACAATATCTAT-TCTGGTGACTCT-GT
101318994 CACAATATCT
1 CACAATATCT
101319004 GGCAGCCTCA
Statistics
Matches: 97, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
26 9 0.09
27 86 0.89
28 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
CACAATATCTATTCTGGTGACTCTGT
Found at i:101325654 original size:17 final size:18
Alignment explanation
Indices: 101325621--101325654 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
101325611 GTATTAAAAT
*
101325621 TATTTTATAATAAATTAA
1 TATTTTATAAAAAATTAA
101325639 TATTTT-TAAAAAATTA
1 TATTTTATAAAAAATTA
101325655 TTTCAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTTTATAAAAAATTAA
Found at i:101332387 original size:2 final size:2
Alignment explanation
Indices: 101332374--101332412 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
101332364 ATGCAGAGTG
*
101332374 CT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT CT -T CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
101332413 ATCCTTTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:101333770 original size:16 final size:16
Alignment explanation
Indices: 101333734--101333779 Score: 69
Period size: 15 Copynumber: 3.0 Consensus size: 16
101333724 CCTTTTAAAA
*
101333734 TAAAAATTTTATAATT
1 TAAAATTTTTATAATT
101333750 T-AAATTTTTATAATT
1 TAAAATTTTTATAATT
101333765 TAAAATTTTTA-AATT
1 TAAAATTTTTATAATT
101333780 AGTAATGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 18 0.64
16 10 0.36
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TAAAATTTTTATAATT
Found at i:101335104 original size:11 final size:11
Alignment explanation
Indices: 101335088--101335122 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
101335078 TAAAATCAAC
101335088 TAAAGTTAGAT
1 TAAAGTTAGAT
101335099 TAAAGTTAGAT
1 TAAAGTTAGAT
101335110 T-AAGTTA-AT
1 TAAAGTTAGAT
101335119 TAAA
1 TAAA
101335123 CCATGATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 3 0.13
10 8 0.35
11 12 0.52
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (11 bp):
TAAAGTTAGAT
Found at i:101336307 original size:30 final size:30
Alignment explanation
Indices: 101336273--101336350 Score: 120
Period size: 30 Copynumber: 2.6 Consensus size: 30
101336263 AACATAAGTT
101336273 AGCTTGTGTGAGCAACTTTGATAAAATGAC
1 AGCTTGTGTGAGCAACTTTGATAAAATGAC
* * * *
101336303 AGCTTGTGTGAGGAACTCTGATATAATGCC
1 AGCTTGTGTGAGCAACTTTGATAAAATGAC
101336333 AGCTTGTGTGAGCAACTT
1 AGCTTGTGTGAGCAACTT
101336351 ATTCACCCGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (30 bp):
AGCTTGTGTGAGCAACTTTGATAAAATGAC
Found at i:101341512 original size:27 final size:27
Alignment explanation
Indices: 101341482--101341610 Score: 147
Period size: 27 Copynumber: 4.8 Consensus size: 27
101341472 ACCCCAGATA
101341482 GTAAAATTACCGAAATACCCTCGATTT
1 GTAAAATTACCGAAATACCCTCGATTT
*
101341509 GTAAAATTACCGAAATA-CCTCCGGTTT
1 GTAAAATTACCGAAATACCCT-CGATTT
* *
101341536 GTAAAATTACCGAAAT-GCCTCTAATTT
1 GTAAAATTACCGAAATACCCTC-GATTT
* * *
101341563 GTAAAATTACTGAAATACCCTTG-TAAT
1 GTAAAATTACCGAAATACCCTCGAT-TT
*
101341590 GTAAAATTACTGAAATACCCT
1 GTAAAATTACCGAAATACCCT
101341611 TGTAGGGTAA
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
26 5 0.06
27 81 0.91
28 3 0.03
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTCGATTT
Found at i:101341593 original size:54 final size:54
Alignment explanation
Indices: 101341482--101341610 Score: 163
Period size: 54 Copynumber: 2.4 Consensus size: 54
101341472 ACCCCAGATA
* *
101341482 GTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCTCCGGTTT
1 GTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATACCTCCGGTAT
* * **
101341536 GTAAAATTACCGAAAT-GCCTCTAATTTGTAAAATTACTGAAATACC-CTTGTAAT
1 GTAAAATTACCGAAATACCCTC-AATTTGTAAAATTACCGAAATACCTCCGGT-AT
*
101341590 GTAAAATTACTGAAATACCCT
1 GTAAAATTACCGAAATACCCT
101341611 TGTAGGGTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
53 7 0.11
54 54 0.84
55 3 0.05
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (54 bp):
GTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATACCTCCGGTAT
Found at i:101344947 original size:27 final size:26
Alignment explanation
Indices: 101344869--101344994 Score: 101
Period size: 27 Copynumber: 4.7 Consensus size: 26
101344859 CCCCAAACAA
* * * *
101344869 TAAAATTACTGAAATTCCCACAGTTTA
1 TAAAATTACTAAAATACCC-TAGTTTG
* **
101344896 TAAAACTACCGAAATACCCTCAGTTTG
1 TAAAATTACTAAAATACCCT-AGTTTG
101344923 TAAAATTACTAAAATACCTCTAGTTTG
1 TAAAATTACTAAAATACC-CTAGTTTG
* * *
101344950 T-AAATTACCAAAATACCCTTGTAGTG
1 TAAAATTACTAAAATACCCTAGT-TTG
* *
101344976 TAAAATTACTTAAACACCC
1 TAAAATTACTAAAATACCC
101344995 CTGTAGGTAA
Statistics
Matches: 81, Mismatches: 14, Indels: 8
0.79 0.14 0.08
Matches are distributed among these distances:
25 4 0.05
26 18 0.22
27 57 0.70
28 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (26 bp):
TAAAATTACTAAAATACCCTAGTTTG
Found at i:101344954 original size:26 final size:27
Alignment explanation
Indices: 101344869--101344968 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
101344859 CCCCAAACAA
** * * *
101344869 TAAAATTACTGAAATTCCCACAGTTTA
1 TAAAATTACCAAAATACCCTCAGTTTG
* *
101344896 TAAAACTACCGAAATACCCTCAGTTTG
1 TAAAATTACCAAAATACCCTCAGTTTG
*
101344923 TAAAATTACTAAAATA-CCTCTAGTTTG
1 TAAAATTACCAAAATACCCTC-AGTTTG
101344950 T-AAATTACCAAAATACCCT
1 TAAAATTACCAAAATACCCT
101344969 TGTAGTGTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 17 0.27
27 45 0.73
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCAGTTTG
Found at i:101344999 original size:27 final size:27
Alignment explanation
Indices: 101344921--101345012 Score: 91
Period size: 26 Copynumber: 3.5 Consensus size: 27
101344911 ACCCTCAGTT
* *
101344921 TGTAAAATTACTAAAATACCTCTAGT-T
1 TGTAAAATTACTAAAATACCCCT-GTAG
* *
101344948 TGT-AAATTACCAAAATACCCTTGTAG
1 TGTAAAATTACTAAAATACCCCTGTAG
* *
101344974 TGTAAAATTACTTAAACACCCCTGTAG
1 TGTAAAATTACTAAAATACCCCTGTAG
*
101345001 -GTAAAATGACTA
1 TGTAAAATTACTA
101345013 TTTTGCCCTT
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
25 2 0.04
26 29 0.55
27 22 0.42
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (27 bp):
TGTAAAATTACTAAAATACCCCTGTAG
Found at i:101346612 original size:16 final size:18
Alignment explanation
Indices: 101346577--101346613 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
101346567 TATTTATTAT
*
101346577 ATATATTATGTTAACTTA
1 ATATATTATGTTAACATA
101346595 ATATA-TATGTT-ACATA
1 ATATATTATGTTAACATA
101346611 ATA
1 ATA
101346614 AAATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 6 0.33
18 5 0.28
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (18 bp):
ATATATTATGTTAACATA
Found at i:101347873 original size:17 final size:17
Alignment explanation
Indices: 101347851--101347883 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
101347841 TTTTAAATGG
*
101347851 AAAATGTTATTGAAATA
1 AAAATGCTATTGAAATA
101347868 AAAATGCTATTGAAAT
1 AAAATGCTATTGAAAT
101347884 TGCAAGTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (17 bp):
AAAATGCTATTGAAATA
Done.