Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 302 of 362
Found at i:101354302 original size:43 final size:43
Alignment explanation
Indices: 101354254--101354343 Score: 144
Period size: 43 Copynumber: 2.1 Consensus size: 43
101354244 CGAGATGTTA
** * *
101354254 CATAGCTGGGCTATTGTTATCGATATACTATAACATGTAAGAC
1 CATAGCTGGGCTATTGGCATCCATATAATATAACATGTAAGAC
101354297 CATAGCTGGGCTATTGGCATCCATATAATATAACATGTAAGAC
1 CATAGCTGGGCTATTGGCATCCATATAATATAACATGTAAGAC
101354340 CATA
1 CATA
101354344 TTTGGGATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (43 bp):
CATAGCTGGGCTATTGGCATCCATATAATATAACATGTAAGAC
Found at i:101360119 original size:43 final size:45
Alignment explanation
Indices: 101359998--101360164 Score: 161
Period size: 43 Copynumber: 3.9 Consensus size: 45
101359988 TCGAGATGTG
*
101359998 ATTACATGTAAGACCATGTCTGGGACATTGGCAT--TATATTGAA
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAATGAA
* * *
101360041 ATTACGTGTAAGACCATGTTTGGGACATTGGCATCGT-TAAT-CA
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAATGAA
* * * *
101360084 ATTTCATGTAAGACCTTGTCTGGGACAGTGGCATCG-AT-ATG-T
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAATGAA
* * * *
101360126 GTTAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 ATT-ACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
101360165 GAGCTTATGT
Statistics
Matches: 102, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
42 11 0.11
43 87 0.85
44 3 0.03
45 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (45 bp):
ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAATGAA
Found at i:101360151 original size:86 final size:83
Alignment explanation
Indices: 101360002--101360159 Score: 192
Period size: 86 Copynumber: 1.8 Consensus size: 83
101359992 GATGTGATTA
* * * * *
101360002 CATGTAAGACCATGTCTGGGACATTGGCATTATATTGAAATTACGTGTAAGACCATGTTTGGGAC
1 CATGTAAGACCATGTCTGGGACAGTGGCATGATATTG--ATTACATGTAAGACCATATCTGGGAC
101360067 ATTGGCATCGTTAATCAATTT
64 A-TGGCATCGTTAATCAATTT
*
101360088 CATGTAAGACCTTGTCTGGGACAGTGGCATCGATATGTG-TTAACATGTAAGACCATATCTGGGA
1 CATGTAAGACCATGTCTGGGACAGTGGCAT-GATAT-TGATT-ACATGTAAGACCATATCTGGGA
*
101360152 TATGGCAT
63 CATGGCAT
101360160 TGTATGAGCT
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 8 0.13
86 48 0.77
87 4 0.06
88 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (83 bp):
CATGTAAGACCATGTCTGGGACAGTGGCATGATATTGATTACATGTAAGACCATATCTGGGACAT
GGCATCGTTAATCAATTT
Found at i:101369149 original size:43 final size:43
Alignment explanation
Indices: 101369054--101369153 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
101369044 ATCGAGATGT
* * * * *
101369054 GATTACATGTAAGACCATGTCTGAGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTATAAGACATTGGCATCGTAATGA
*
101369097 GATTACGTGTAAGACCATGTATAAGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTATAAGACATTGGCATCG-TAATGA
*
101369140 GATTTCGTGTAAGA
1 GATTACGTGTAAGA
101369154 TCCTATATGG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
43 46 0.94
44 3 0.06
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTATAAGACATTGGCATCGTAATGA
Found at i:101375624 original size:21 final size:21
Alignment explanation
Indices: 101375586--101375627 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
101375576 GTTGTCGCTA
*
101375586 AAATAAAAAATACATCTATAT
1 AAATAAAAAAAACATCTATAT
101375607 AAATAAAAAAAA-ACTCTATAT
1 AAATAAAAAAAACA-TCTATAT
101375628 CGATGGTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26
Consensus pattern (21 bp):
AAATAAAAAAAACATCTATAT
Found at i:101381435 original size:18 final size:18
Alignment explanation
Indices: 101381396--101381438 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
101381386 TCCAAGTTTT
*
101381396 TTTTATAGTTATTAAGTA
1 TTTTATAGTTATTAAGGA
*
101381414 TTTTA-AGTTATTTAGGA
1 TTTTATAGTTATTAAGGA
101381431 GTTTTATA
1 -TTTTATA
101381439 TCAATAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 10 0.48
18 10 0.48
19 1 0.05
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (18 bp):
TTTTATAGTTATTAAGGA
Found at i:101381869 original size:17 final size:19
Alignment explanation
Indices: 101381828--101381869 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
101381818 ATCTGTCTTC
*
101381828 TTTATTGTTCTAATTTTTGA
1 TTTATTGTTCT-AGTTTTGA
101381848 TTTATTGTTCT-GTTTT-A
1 TTTATTGTTCTAGTTTTGA
101381865 TTTAT
1 TTTAT
101381870 CTTAGTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 4 0.19
20 11 0.52
ACGTcount: A:0.17, C:0.05, G:0.10, T:0.69
Consensus pattern (19 bp):
TTTATTGTTCTAGTTTTGA
Found at i:101384307 original size:29 final size:29
Alignment explanation
Indices: 101384214--101384342 Score: 102
Period size: 29 Copynumber: 4.5 Consensus size: 29
101384204 CAATCTAAAC
* *
101384214 TACAAGCTAAAGTGGTGGGCAGTCCAAAG
1 TACAAGCTAAAGTGATGGACAGTCCAAAG
** * *
101384243 TGTAAG-TCAAAGTGACAGG-CATTCCAAAG
1 TACAAGCT-AAAGTGA-TGGACAGTCCAAAG
**
101384272 TGTAAGCTAAAGTGATGGACAGTCCAAAG
1 TACAAGCTAAAGTGATGGACAGTCCAAAG
* * * *
101384301 TACAAGCCAAAGTGGTGAACAATCC-AAG
1 TACAAGCTAAAGTGATGGACAGTCCAAAG
*
101384329 TACAAGCCAAAGTG
1 TACAAGCTAAAGTG
101384343 GTAGACAATC
Statistics
Matches: 83, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
28 20 0.24
29 60 0.72
30 3 0.04
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.18
Consensus pattern (29 bp):
TACAAGCTAAAGTGATGGACAGTCCAAAG
Found at i:101384336 original size:28 final size:28
Alignment explanation
Indices: 101384275--101384361 Score: 95
Period size: 28 Copynumber: 3.1 Consensus size: 28
101384265 TCCAAAGTGT
* * * *
101384275 AAGCTAAAGTGATGGACAGTCCAAAGTAC
1 AAGCCAAAGTGGTGAACAATCC-AAGTAC
101384304 AAGCCAAAGTGGTGAACAATCCAAGTAC
1 AAGCCAAAGTGGTGAACAATCCAAGTAC
* *
101384332 AAGCCAAAGTGGT-AGACAATCTAACTAC
1 AAGCCAAAGTGGTGA-ACAATCCAAGTAC
101384360 AA
1 AA
101384362 ACTATCCCAA
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 1 0.02
28 32 0.63
29 18 0.35
ACGTcount: A:0.44, C:0.20, G:0.21, T:0.16
Consensus pattern (28 bp):
AAGCCAAAGTGGTGAACAATCCAAGTAC
Found at i:101398510 original size:15 final size:16
Alignment explanation
Indices: 101398490--101398522 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
101398480 ATATATTTTT
101398490 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
101398505 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
101398522 T
1 T
101398523 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:101398608 original size:22 final size:22
Alignment explanation
Indices: 101398569--101398627 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
101398559 GTTTTAAGAA
*
101398569 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
101398590 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
101398612 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
101398628 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:101398644 original size:26 final size:24
Alignment explanation
Indices: 101398598--101398646 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
101398588 ATTTGTTTTA
*
101398598 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
101398622 ATATTTGATTTATTATATTTTTAAA
1 ATATTT-ATTT-TTATATTTTTAAA
101398647 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:101398657 original size:25 final size:26
Alignment explanation
Indices: 101398601--101398658 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
101398591 TGTTTTAATA
*
101398601 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATATTTTTAAATATAT
* *
101398626 TTGATTTATTATATTTTTAAA-ATTT
1 TTTATTTATTATATTTTTAAATATAT
101398651 TTTATTTA
1 TTTATTTA
101398659 ATGAAATAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (26 bp):
TTTATTTATTATATTTTTAAATATAT
Found at i:101399766 original size:15 final size:16
Alignment explanation
Indices: 101399746--101399775 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
101399736 TACACAGTTC
101399746 TTACAACA-ATAGAAT
1 TTACAACACATAGAAT
101399761 TTACAACACATAGAA
1 TTACAACACATAGAA
101399776 GTAAAAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.23
Consensus pattern (16 bp):
TTACAACACATAGAAT
Found at i:101400863 original size:28 final size:28
Alignment explanation
Indices: 101400823--101400878 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
101400813 CCATGAGAAG
101400823 AAAAAACATTTCAAGATTAAGTACCATT
1 AAAAAACATTTCAAGATTAAGTACCATT
101400851 AAAAAACATTTCAAGATTAAGTACCATT
1 AAAAAACATTTCAAGATTAAGTACCATT
101400879 TTGTAAGGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (28 bp):
AAAAAACATTTCAAGATTAAGTACCATT
Found at i:101408809 original size:24 final size:24
Alignment explanation
Indices: 101408782--101408834 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
101408772 ATATGGAAAG
*
101408782 AAATAAAAAAGATTTTATGCTAAT
1 AAATAAAAAAGATATTATGCTAAT
*** *
101408806 AAATGTGAAATATATTATGCTAAT
1 AAATAAAAAAGATATTATGCTAAT
101408830 AAATA
1 AAATA
101408835 CTAAATATTA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.34
Consensus pattern (24 bp):
AAATAAAAAAGATATTATGCTAAT
Found at i:101408840 original size:24 final size:24
Alignment explanation
Indices: 101408796--101408842 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
101408786 AAAAAAGATT
*
101408796 TTATGCTAATAAATGTGAAATATA
1 TTATGCTAATAAATCTGAAATATA
101408820 TTATGCTAATAAATACT-AAATAT
1 TTATGCTAATAAAT-CTGAAATAT
101408843 TAAAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (24 bp):
TTATGCTAATAAATCTGAAATATA
Found at i:101411376 original size:46 final size:46
Alignment explanation
Indices: 101411309--101411480 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
101411299 TGTAACCCGC
*
101411309 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
101411355 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
101411405 -C-TCA-CG-ACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
101411447 CCAT-AGTGAACTC-GACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
101411481 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 9, Indels: 22
0.78 0.07 0.16
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 3 0.03
44 23 0.21
45 4 0.04
46 60 0.56
47 1 0.01
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:101411426 original size:92 final size:90
Alignment explanation
Indices: 101411319--101411484 Score: 287
Period size: 92 Copynumber: 1.8 Consensus size: 90
101411309 CCATAAGCGA
* *
101411319 ACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 ACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTC-GACTCAACTCAACG
101411384 AGTTCGGATGCCTAGTTACATCTCACG
64 AGTTCGGATGCCTAGTTACATCTCACG
*
101411411 ACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGTGAACTCGACTCAACTCAACGAG
1 ACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGACTCAACTCAACGAG
101411476 TTCGGATGC
66 TTCGGATGC
101411485 TCAACCATCC
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
90 25 0.35
91 9 0.13
92 37 0.52
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (90 bp):
ACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGACTCAACTCAACGAG
TTCGGATGCCTAGTTACATCTCACG
Found at i:101418918 original size:93 final size:93
Alignment explanation
Indices: 101418805--101418976 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
101418795 CGCCCATAAG
* *
101418805 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
101418870 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
101418898 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGGCTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
101418963 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
101418977 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:101418973 original size:46 final size:46
Alignment explanation
Indices: 101418798--101418973 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
101418788 AGTAACCCGC
* * *
101418798 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
101418844 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
101418894 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
101418937 CCATAAGTGAACTCGGGCTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
101418974 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:101421192 original size:11 final size:11
Alignment explanation
Indices: 101421124--101421194 Score: 55
Period size: 11 Copynumber: 6.8 Consensus size: 11
101421114 ATTCCAAAAA
*
101421124 TAATATTATTT
1 TAATATTAATT
101421135 TAATA--AATT
1 TAATATTAATT
101421144 TAAT-TTAAATT
1 TAATATT-AATT
*
101421155 TAATACTTATTT
1 TAATA-TTAATT
*
101421167 TAATAGT-ATT
1 TAATATTAATT
101421177 T--TATTAATT
1 TAATATTAATT
101421186 TAATATTAA
1 TAATATTAA
101421195 AACGATTATC
Statistics
Matches: 47, Mismatches: 5, Indels: 16
0.69 0.07 0.24
Matches are distributed among these distances:
8 3 0.06
9 11 0.23
10 3 0.06
11 20 0.43
12 8 0.17
13 2 0.04
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:101423306 original size:21 final size:21
Alignment explanation
Indices: 101423281--101423329 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
101423271 AGTTAGCTCA
*
101423281 TCACTAGACTACAACCCCAAC
1 TCACTAAACTACAACCCCAAC
* *
101423302 TCACTAAACTACAATCCCAGC
1 TCACTAAACTACAACCCCAAC
*
101423323 TCGCTAA
1 TCACTAA
101423330 TATCATCATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.37, C:0.39, G:0.06, T:0.18
Consensus pattern (21 bp):
TCACTAAACTACAACCCCAAC
Found at i:101425842 original size:24 final size:24
Alignment explanation
Indices: 101425806--101425857 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
101425796 TAAATATGGA
**
101425806 AATAAATAACAAAGATTTTATGCT
1 AATAAATAACAAAGATACTATGCT
** *
101425830 AATAAATGTCAAATATACTATGCT
1 AATAAATAACAAAGATACTATGCT
101425854 AATA
1 AATA
101425858 CATACTAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.33
Consensus pattern (24 bp):
AATAAATAACAAAGATACTATGCT
Found at i:101426558 original size:10 final size:10
Alignment explanation
Indices: 101426527--101426551 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
101426517 TATCCTATAT
101426527 AATATAATAA
1 AATATAATAA
101426537 AATATAATAA
1 AATATAATAA
101426547 AATAT
1 AATAT
101426552 TTTAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AATATAATAA
Found at i:101428337 original size:31 final size:34
Alignment explanation
Indices: 101428302--101428366 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
101428292 GGAAAACGAA
* *
101428302 ATAAAATT-ATA-ATATCTATTTTTG-ATAGCTT
1 ATAAAATTAATATATATATATATTTGCATAGCTT
101428333 ATAAAATTAATATATATATATATTTGCATAGCTT
1 ATAAAATTAATATATATATATATTTGCATAGCTT
101428367 TTTTTAACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 8 0.28
32 3 0.10
33 11 0.38
34 7 0.24
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (34 bp):
ATAAAATTAATATATATATATATTTGCATAGCTT
Found at i:101432582 original size:20 final size:20
Alignment explanation
Indices: 101432546--101432583 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
101432536 TGATTAGTCT
*
101432546 TTGGATTAGGTGTCTAAATG
1 TTGGATTAGGTGCCTAAATG
101432566 TTGGATCTA-GTGCCTAAA
1 TTGGAT-TAGGTGCCTAAA
101432584 GCATAGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (20 bp):
TTGGATTAGGTGCCTAAATG
Found at i:101433763 original size:59 final size:58
Alignment explanation
Indices: 101433700--101433823 Score: 187
Period size: 59 Copynumber: 2.1 Consensus size: 58
101433690 GTGAAAAACG
* *
101433700 GAGAAATGAGAAACATTTGGAAATGAAATGTAGTTTTCTCCAAAATGAAAATGAAAATT
1 GAGAAATGAGAAACATTTAGAAATGAAATATAGTTTTCTCCAAAATGAAAATGAAAA-T
* * *
101433759 GAGAAATGAGAAACATTTAGAAATGAAATATGGTTTTCTCTAAATTGAAAATGAAAAT
1 GAGAAATGAGAAACATTTAGAAATGAAATATAGTTTTCTCCAAAATGAAAATGAAAAT
101433817 GA-AAATG
1 GAGAAATG
101433824 GATAAATAGA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 5 0.08
58 3 0.05
59 52 0.87
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.27
Consensus pattern (58 bp):
GAGAAATGAGAAACATTTAGAAATGAAATATAGTTTTCTCCAAAATGAAAATGAAAAT
Found at i:101438140 original size:16 final size:15
Alignment explanation
Indices: 101438108--101438142 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
101438098 ATGTAAATAA
101438108 ATATAATAATAACAT
1 ATATAATAATAACAT
*
101438123 ATATAATCAATTACAT
1 ATATAAT-AATAACAT
101438139 ATAT
1 ATAT
101438143 TAAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATAATAACAT
Found at i:101440489 original size:51 final size:50
Alignment explanation
Indices: 101440390--101440504 Score: 128
Period size: 51 Copynumber: 2.3 Consensus size: 50
101440380 AATAAATAAT
* *
101440390 ATAAACAAATATTTATATTTATATAAAAACACTAGATCTAAGCAAATTAA
1 ATAAATAAATATTTATATTTATATAAAAACACTAGATCTAAACAAATTAA
* *
101440440 ATTAAATAAATATTTATATTTAT-TTAAAACA-TCATATCTGAAA-ACAATTAA
1 A-TAAATAAATATTTATATTTATATAAAAACACT-AGATCT-AAACA-AATTAA
101440491 ATAAATAAGATATT
1 ATAAATAA-ATATT
101440505 GAAAAATCAG
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
49 1 0.02
50 21 0.38
51 34 0.61
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (50 bp):
ATAAATAAATATTTATATTTATATAAAAACACTAGATCTAAACAAATTAA
Found at i:101442718 original size:3 final size:3
Alignment explanation
Indices: 101442710--101442737 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
101442700 AATTCAGATG
101442710 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
101442738 AGGCAAACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:101448988 original size:128 final size:131
Alignment explanation
Indices: 101448626--101449060 Score: 366
Period size: 130 Copynumber: 3.3 Consensus size: 131
101448616 ATGAAAAAGC
* ** * * ***
101448626 GCAACCCAGCACAATAGGGCTCGATTCTCA--AATCGCCAAATATCGAACATCGCCTTCGTTTTG
1 GCAACCCAACACGTTAGGGCACGATTC-CACGAATTGCCAAATATCGCGTATCGCCTTCG-TTT-
* ** * * * * *
101448689 AAAGG-TTTTTAATAA-ACATGAATGTAAA-CCTAAAGGAATATTCGATTGTTTTAAACAAACGA
63 AAAGGATTTTTAA-AAGACATGAGTG-AAATTTTGAAGGGATATTCGATTATTTTAAACAGACGC
*
101448751 GAAATC
126 GAAATT
* * * * * * * * * ** *
101448757 ACAACCCAGCACGATAAGGCATGATTCC-CGAATTGTCAAACACCGAGTATTACCTTCATTTTAA
1 GCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCGCGTATCGCCTTC-GTTTAA
* * * *
101448821 AGGATTTTTAGAAGACCTGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAACA-A-TCGAAA
65 AGGATTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAACAGACGCGAAA
101448884 TT
130 TT
* *
101448886 GCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAATTATCGCGTATCGCCTTCGTTTAAG
1 GCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCGCGTATCGCCTTCGTTTAAA
* * * *
101448951 GGA-TTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTCGATTATTTTGAGCAGACGCGAAGT
66 GGATTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAACAGACGCGAAAT
101449015 T
131 T
* * * *
101449016 GCAACCCAATACGTTAGGGCATGATTCCGCGAATTGTCAAATATC
1 GCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATC
101449061 AAATCTCGTC
Statistics
Matches: 242, Mismatches: 53, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
128 45 0.19
129 37 0.15
130 80 0.33
131 80 0.33
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (131 bp):
GCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCGCGTATCGCCTTCGTTTAAA
GGATTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAACAGACGCGAAAT
T
Found at i:101450512 original size:148 final size:149
Alignment explanation
Indices: 101450346--101450642 Score: 343
Period size: 148 Copynumber: 2.0 Consensus size: 149
101450336 TAAAATACAT
* * * *
101450346 ATAATAATAAATTAAAAGATATGTTATATAAGATTATATATTAAAAGACG-AGGATAAATTTAAA
1 ATAATAATAAATTAAAAGATATATTATATAAGATTATACAATAAAAGACGAAAG-TAAATTTAAA
* * **
101450410 -AGAAACTATATGCGTAAAATAATAT-AGAATTAATAAAATGCATAGAATAAAA-TAATTTTACT
65 GA-AAACTATATGCGCAAAATAATATAAG-ATTAATAAAATGCATAAAATAAAATTAACCTTACT
101450472 ATAAAGTACT-TATATATATATA
128 ATAAAGTA-TGTATATATATATA
* * * * * * *
101450494 ATAATAATAATTTAAAAGATGTATTATGTAGGATTATGCAATAAAATATGAAAGTAAATTTAAAG
1 ATAATAATAAATTAAAAGATATATTATATAAGATTATACAATAAAAGACGAAAGTAAATTTAAAG
* * * *
101450559 AAAATTATATGTGCAAAATAATATAAGATTAATAATATGCATAAAATAAAATTAACCTTATTATA
66 AAAACTATATGCGCAAAATAATATAAGATTAATAAAATGCATAAAATAAAATTAACCTTACTATA
*
101450624 AAGTATGTATATATGTATA
131 AAGTATGTATATATATATA
101450643 TAAAGGGACA
Statistics
Matches: 124, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
148 93 0.75
149 31 0.25
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.34
Consensus pattern (149 bp):
ATAATAATAAATTAAAAGATATATTATATAAGATTATACAATAAAAGACGAAAGTAAATTTAAAG
AAAACTATATGCGCAAAATAATATAAGATTAATAAAATGCATAAAATAAAATTAACCTTACTATA
AAGTATGTATATATATATA
Found at i:101459120 original size:11 final size:11
Alignment explanation
Indices: 101459106--101459130 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
101459096 TAGATTTAAT
101459106 ATTCATCATTA
1 ATTCATCATTA
101459117 ATTCATCATTA
1 ATTCATCATTA
101459128 ATT
1 ATT
101459131 GAAATTTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (11 bp):
ATTCATCATTA
Found at i:101464289 original size:19 final size:19
Alignment explanation
Indices: 101464240--101464351 Score: 156
Period size: 19 Copynumber: 5.8 Consensus size: 19
101464230 AAATTAAATC
* *
101464240 TCTAAGATTTCAAGATCATA
1 TCTAAGATTGC-ATATCATA
101464260 TCTTCAAGATTGCATATCATA
1 TC-T-AAGATTGCATATCATA
*
101464281 TCTAAGATTGCATATAATA
1 TCTAAGATTGCATATCATA
101464300 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
101464317 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
101464336 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
101464352 CTTAAATATT
Statistics
Matches: 84, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.19
19 48 0.57
20 3 0.04
21 10 0.12
22 7 0.08
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:101464316 original size:36 final size:37
Alignment explanation
Indices: 101464265--101464351 Score: 140
Period size: 36 Copynumber: 2.3 Consensus size: 37
101464255 TCATATCTTC
101464265 AAGATTGCATATCATATCTAAGATTGCATATAATATCT
1 AAGATTG-ATATCATATCTAAGATTGCATATAATATCT
*
101464303 AAGATTG-TATCATATCTAAGATTGCATATCATATCT
1 AAGATTGATATCATATCTAAGATTGCATATAATATCT
101464339 AAGATTGCATATC
1 AAGATTG-ATATC
101464352 CTTAAATATT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
36 35 0.76
38 11 0.24
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (37 bp):
AAGATTGATATCATATCTAAGATTGCATATAATATCT
Found at i:101465044 original size:87 final size:87
Alignment explanation
Indices: 101464906--101465096 Score: 276
Period size: 87 Copynumber: 2.2 Consensus size: 87
101464896 CCATGCTGAA
* * * * *
101464906 ATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTTAGATCTACTATGTCTTCGATTTGTTCCCT
1 ATCTTGGATCTGCTTCGCTGTAAACACAGGAAGGTCAGATCTACTATGTCTTCGATTTGCTCCCT
101464971 GTAAACACAAGGATGCCAAATC
66 GTAAACACAAGGATGCCAAATC
** * *
101464993 ATCTTGGATCTGCTTCAGC-GTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCT
1 ATCTTGGATCTGCTTC-GCTGTAAACACAGGAAGGTCAGATCTACTATGTCTTCGATTTGCTCCC
*
101465057 TGTAAACACAAGGATGCTAAATC
65 TGTAAACACAAGGATGCCAAATC
101465080 ATCTTGGATCTGCTTCG
1 ATCTTGGATCTGCTTCG
101465097 AAGGTCAGAT
Statistics
Matches: 93, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
86 1 0.01
87 90 0.97
88 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (87 bp):
ATCTTGGATCTGCTTCGCTGTAAACACAGGAAGGTCAGATCTACTATGTCTTCGATTTGCTCCCT
GTAAACACAAGGATGCCAAATC
Found at i:101465529 original size:166 final size:165
Alignment explanation
Indices: 101465250--101465618 Score: 519
Period size: 166 Copynumber: 2.2 Consensus size: 165
101465240 GCTATACTTT
* * *
101465250 AACCTGTTACCCTACTGCTCAGGGGGTTAAGGCGCATCTTCGATCTGCTCCACTATTGCTTAGGG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCATCTTCGATCTGCTCCACTACTGCTTAGGG
* * *
101465315 AGATAAGATCTGTAAATTTAACCTATTACCCTACTGCTTAGGGGATTAAGGCGAGTTGTCGTCGA
66 AGATAAGATCTGCAAATTTAACCTATTACCCTACCGCTTAGAGGATTAAGGCG-G--GTCGTCGA
**
101465380 TCTGCTCTGCTACTACTTAGGGAGATAAGATCT-A-CG
128 TCTGCTCCACTACTACTTAGGGAGATAAGATCTAATCG
* *
101465416 AACCTGTTACCCTACTGCTTAGGAGATTAAGGTG-AGTCTTCGATCTGCTCCACTACTGCTTAGG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCA-TCTTCGATCTGCTCCACTACTGCTTAGG
* * *
101465480 GAGATAAGATCTGCAAATTTAACCTGTTACCCTACCGTTTAGAGGATTAAGGCGGGTCTTCGATC
65 GAGATAAGATCTGCAAATTTAACCTATTACCCTACCGCTTAGAGGATTAAGGCGGGTCGTCGATC
**
101465545 TGCTCCACTACTACTTAGGGAGATAAGATCTGCAAATTT
130 TGCTCCACTACTACTTAGGGAGATAAGATCT---AATCG
101465584 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGC
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGC
101465619 TGAATTTTGT
Statistics
Matches: 179, Mismatches: 17, Indels: 11
0.86 0.08 0.05
Matches are distributed among these distances:
163 38 0.21
165 2 0.01
166 106 0.59
167 1 0.01
168 32 0.18
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (165 bp):
AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCATCTTCGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGCAAATTTAACCTATTACCCTACCGCTTAGAGGATTAAGGCGGGTCGTCGATCT
GCTCCACTACTACTTAGGGAGATAAGATCTAATCG
Found at i:101465544 original size:84 final size:84
Alignment explanation
Indices: 101465247--101465617 Score: 500
Period size: 84 Copynumber: 4.4 Consensus size: 84
101465237 TCTGCTATAC
* * ** * *
101465247 TTTAACCTGTTACCCTACTGCTCAGGGGGTTAAGGCGCATCTTCGATCTGCTCCACTATTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTACTTA
*
101465312 GGGAGATAAGATCTGTAAA
66 GGGAGATAAGATCTGCAAA
* * **
101465331 TTTAACCTATTACCCTACTGCTTAGGGGATTAAGGCGAGTTGTCGTCGATCTGCTCTGCTACTAC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-G--GTCTTCGATCTGCTCCACTACTAC
101465396 TTAGGGAGATAAGATCT----A
63 TTAGGGAGATAAGATCTGCAAA
** * * * *
101465414 -CGAACCTGTTACCCTACTGCTTAGGAGATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTACTTA
101465478 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* * *
101465497 TTTAACCTGTTACCCTACCGTTTAGAGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTACTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTACTTA
101465562 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
101465581 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
101465618 CTGAATTTTG
Statistics
Matches: 247, Mismatches: 32, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
79 37 0.15
82 31 0.13
83 2 0.01
84 142 0.57
87 35 0.14
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (84 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTACTTA
GGGAGATAAGATCTGCAAA
Found at i:101466571 original size:1 final size:1
Alignment explanation
Indices: 101466565--101466650 Score: 55
Period size: 1 Copynumber: 86.0 Consensus size: 1
101466555 GGCCTCTCCA
* * * * * * * * * *
101466565 TTTTTTTTTCTTTTTTCTTTTTCTTTTCTTTTCTTTTTATTTTATTTTCTTTTTTTCTTTTTTTC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* **
101466630 TTTTCTTTTTTCCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTT
101466651 GAAATAGAAG
Statistics
Matches: 61, Mismatches: 24, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (1 bp):
T
Found at i:101466578 original size:5 final size:5
Alignment explanation
Indices: 101466565--101466638 Score: 62
Period size: 5 Copynumber: 14.8 Consensus size: 5
101466555 GGCCTCTCCA
* * * *
101466565 TTTTT TTTTC TTTT- TTCT- TTTTC TTTTC TTTTC TTTTTA TTTTA TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTTC
* *
101466614 TTTTT TTCTTT TTTTC TTTTC TTTT
1 TTTTC TT-TTC TTTTC TTTTC TTTT
101466639 TTCCTTTTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
4 6 0.10
5 44 0.75
6 9 0.15
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (5 bp):
TTTTC
Found at i:101466645 original size:21 final size:20
Alignment explanation
Indices: 101466565--101466649 Score: 97
Period size: 21 Copynumber: 4.2 Consensus size: 20
101466555 GGCCTCTCCA
101466565 TTTTT-TTTTCTTTTTTC--
1 TTTTTCTTTTCTTTTTTCTT
101466582 TTTTTCTTTTCTTTTCTT-TT
1 TTTTTCTTTTCTTTT-TTCTT
*
101466602 TATTTTATTTTCTTTTTTTCTT
1 T-TTTTCTTTTC-TTTTTTCTT
101466624 TTTTTCTTTTCTTTTTTCCTT
1 TTTTTCTTTTCTTTTTT-CTT
101466645 TTTTT
1 TTTTT
101466650 TGAAATAGAA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
17 5 0.09
18 9 0.16
19 2 0.03
20 7 0.12
21 28 0.48
22 7 0.12
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTCTTTTCTTTTTTCTT
Found at i:101466649 original size:16 final size:15
Alignment explanation
Indices: 101466567--101466649 Score: 84
Period size: 16 Copynumber: 5.5 Consensus size: 15
101466557 CCTCTCCATT
101466567 TTTTTTTCTTTTTTC
1 TTTTTTTCTTTTTTC
101466582 TTTTTCTT-TTCTTTTC
1 TTTTT-TTCTT-TTTTC
101466598 TTTTTATT-TTATTTTC
1 TTTTT-TTCTT-TTTTC
101466614 TTTTTTTC-TTTTT-
1 TTTTTTTCTTTTTTC
*
101466627 TTCTTTTCTTTTTTCC
1 TTTTTTTCTTTTTT-C
101466643 TTTTTTT
1 TTTTTTT
101466650 TGAAATAGAA
Statistics
Matches: 58, Mismatches: 4, Indels: 11
0.79 0.05 0.15
Matches are distributed among these distances:
13 7 0.12
14 9 0.16
15 10 0.17
16 32 0.55
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTCTTTTTTC
Found at i:101472296 original size:19 final size:19
Alignment explanation
Indices: 101472261--101472358 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
101472251 AGATTATAAG
101472261 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
101472282 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
101472301 ATAATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
101472318 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
101472337 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101472356 ATC
1 ATC
101472359 CTTAAATATT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 15 0.21
19 47 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:101472323 original size:36 final size:37
Alignment explanation
Indices: 101472272--101472358 Score: 131
Period size: 36 Copynumber: 2.3 Consensus size: 37
101472262 TCATATCTTC
101472272 AAGATTGCATATCATATCTAAGATTGCATATAATATCT
1 AAGATTG-ATATCATATCTAAGATTGCATATAATATCT
* *
101472310 AAGATTG-TATCATATCTAATATTGCATATCATATCT
1 AAGATTGATATCATATCTAAGATTGCATATAATATCT
101472346 AAGATTGCATATC
1 AAGATTG-ATATC
101472359 CTTAAATATT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
36 34 0.76
38 11 0.24
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (37 bp):
AAGATTGATATCATATCTAAGATTGCATATAATATCT
Found at i:101472367 original size:36 final size:35
Alignment explanation
Indices: 101472261--101472368 Score: 94
Period size: 36 Copynumber: 2.9 Consensus size: 35
101472251 AGATTATAAG
* *
101472261 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTGCATATC--CT-TAATATTGCAT
*
101472301 ATAATATCTAAGATTGTATCATAT-C-TAATATTGCAT
1 ATCATATCTAAGATTG---CATATCCTTAATATTGCAT
101472337 ATCATATCTAAGATTGCATATCCTTAAATATT
1 ATCATATCTAAGATTGCATATCCTT-AATATT
101472369 ATATTTCCAT
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
33 5 0.09
34 1 0.02
35 1 0.02
36 31 0.53
38 7 0.12
39 1 0.02
40 7 0.12
41 5 0.09
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (35 bp):
ATCATATCTAAGATTGCATATCCTTAATATTGCAT
Found at i:101478845 original size:26 final size:25
Alignment explanation
Indices: 101478815--101478863 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
101478805 GAGATAAAAT
101478815 TTAAAATGATG-ATTAAAGATATTAGA
1 TTAAAAT-ATGTATTAAA-ATATTAGA
*
101478841 TTAAAATATGTATTCAAATATTA
1 TTAAAATATGTATTAAAATATTA
101478864 TAAATAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (25 bp):
TTAAAATATGTATTAAAATATTAGA
Found at i:101480538 original size:55 final size:54
Alignment explanation
Indices: 101480476--101480631 Score: 231
Period size: 55 Copynumber: 2.9 Consensus size: 54
101480466 TTCTGATTTT
* *
101480476 TCTTCTTTTGAATCGATTTTTTATATGTTTAAATCGATTTTTATGTTGGAATAC
1 TCTTCTTTTGAATCGATTTTTTATATGTTTAAATCAATTGTTATGTTGGAATAC
* * *
101480530 TACTTCTTTTGAATCGATTATTTATATGTTTAAATCTATTGTTATGTTGGAATGC
1 T-CTTCTTTTGAATCGATTTTTTATATGTTTAAATCAATTGTTATGTTGGAATAC
* *
101480585 TCTACTTTTGAATAGATTGTTTTATATGTTTAAATCAATTGTTATGT
1 TCTTCTTTTGAATCGATT-TTTTATATGTTTAAATCAATTGTTATGT
101480632 AGCACGTCTA
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
54 16 0.17
55 76 0.83
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (54 bp):
TCTTCTTTTGAATCGATTTTTTATATGTTTAAATCAATTGTTATGTTGGAATAC
Found at i:101482058 original size:39 final size:39
Alignment explanation
Indices: 101482015--101482154 Score: 185
Period size: 39 Copynumber: 3.6 Consensus size: 39
101482005 CATTTTCACT
* *
101482015 TTTAAGCATATATCACATTACACATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
101482054 TTTAAGCATATATCATAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
101482093 TTTAAGCATATAT-ATCAACACTCATGTAATTACATAACA
1 TTTAAGCATATATCA-CAATACTCATATAATCACATAACA
* *
101482132 TTCAAGCATAT-TCTCAATACTCA
1 TTTAAGCATATATCACAATACTCA
101482155 AAAACATGTT
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
38 10 0.11
39 79 0.89
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.33
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:101482950 original size:16 final size:16
Alignment explanation
Indices: 101482929--101482967 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
101482919 AGGAACTCAC
101482929 CATAAGCAATCAAAAA
1 CATAAGCAATCAAAAA
101482945 CATAAGCAATCAAAAA
1 CATAAGCAATCAAAAA
101482961 CATAAGC
1 CATAAGC
101482968 CTAAGCTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.59, C:0.21, G:0.08, T:0.13
Consensus pattern (16 bp):
CATAAGCAATCAAAAA
Found at i:101485673 original size:17 final size:17
Alignment explanation
Indices: 101485653--101485687 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
101485643 AAAATTTAAA
101485653 ATTTAAAATTTTTATTT
1 ATTTAAAATTTTTATTT
**
101485670 ATTTATTATTTTTATTT
1 ATTTAAAATTTTTATTT
101485687 A
1 A
101485688 AAAATCAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTAAAATTTTTATTT
Found at i:101487639 original size:16 final size:16
Alignment explanation
Indices: 101487607--101487641 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
101487597 ATTCACTTCC
**
101487607 TATAATTTAATTTTTT
1 TATAATTTAATAATTT
101487623 TATAATTTAATAATTT
1 TATAATTTAATAATTT
101487639 TAT
1 TAT
101487642 TTTTATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATAATTTAATAATTT
Found at i:101494408 original size:21 final size:22
Alignment explanation
Indices: 101494382--101494429 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
101494372 GTATAATATA
*
101494382 AAATAATAATA-TACAGTAAAT
1 AAATAATAATATTAAAGTAAAT
101494403 AAATAATAATATTTAAAGTAAAT
1 AAATAATAATA-TTAAAGTAAAT
101494426 AAAT
1 AAAT
101494430 TTAAAAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 11 0.46
23 13 0.54
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (22 bp):
AAATAATAATATTAAAGTAAAT
Found at i:101496197 original size:3 final size:3
Alignment explanation
Indices: 101496189--101496221 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
101496179 TGTTATTTTC
101496189 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
101496222 CAAATGTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:101497648 original size:15 final size:16
Alignment explanation
Indices: 101497628--101497657 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
101497618 TTTTGCTTCT
101497628 TCTTCCTTCA-CATCA
1 TCTTCCTTCATCATCA
101497643 TCTTCCTTCATCATC
1 TCTTCCTTCATCATC
101497658 TTAACTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTTCCTTCATCATCA
Found at i:101499587 original size:40 final size:40
Alignment explanation
Indices: 101499532--101499634 Score: 170
Period size: 40 Copynumber: 2.6 Consensus size: 40
101499522 ATATTTTACT
* *
101499532 CGGATAAAGTATGTATTAATAGAAAACTGTATAATTTATC
1 CGGATGAAGTATGTATTAATAGAAAACTGTATAATTTAAC
*
101499572 CGGATGAAGTATGTATTAACAGAAAACTGTATAATTTAAC
1 CGGATGAAGTATGTATTAATAGAAAACTGTATAATTTAAC
*
101499612 CGGATGATGTATGTATTAATAGA
1 CGGATGAAGTATGTATTAATAGA
101499635 TATACTTAAG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (40 bp):
CGGATGAAGTATGTATTAATAGAAAACTGTATAATTTAAC
Found at i:101500485 original size:46 final size:44
Alignment explanation
Indices: 101500393--101500486 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
101500383 ATTACAACAT
* *
101500393 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTAAACCAAACACAAGAATACTATTACAGCTCTATTC
***
101500437 CATTCCATTAAACCAAACAGTTGAATTACTTATTACAGCTCTATTC
1 CATTCCATTAAACCAAACACAAGAA-TAC-TATTACAGCTCTATTC
101500483 CATT
1 CATT
101500487 ACAGCTCTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 21 0.49
45 3 0.07
46 19 0.44
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (44 bp):
CATTCCATTAAACCAAACACAAGAATACTATTACAGCTCTATTC
Found at i:101500489 original size:16 final size:16
Alignment explanation
Indices: 101500468--101500521 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
101500458 TGAATTACTT
101500468 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
101500484 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
*
101500500 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
101500516 ATTACA
1 ATTACA
101500522 ACCAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:101501975 original size:42 final size:42
Alignment explanation
Indices: 101501916--101502007 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
101501906 ATAATATTTG
101501916 TCACATAAATCATGAACTCAGACCACAACTCATGAGTTCAGA
1 TCACATAAATCATGAACTCAGACCACAACTCATGAGTTCAGA
*
101501958 TCACATAAATCATGAACTCAGATCACAACTCATGAGTTCAGA
1 TCACATAAATCATGAACTCAGACCACAACTCATGAGTTCAGA
101502000 TCACATAA
1 TCACATAA
101502008 TTTCCTAGTG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.41, C:0.25, G:0.11, T:0.23
Consensus pattern (42 bp):
TCACATAAATCATGAACTCAGACCACAACTCATGAGTTCAGA
Found at i:101501978 original size:22 final size:22
Alignment explanation
Indices: 101501916--101502007 Score: 93
Period size: 20 Copynumber: 4.4 Consensus size: 22
101501906 ATAATATTTG
101501916 TCACATAAATCATGAACTCAGA
1 TCACATAAATCATGAACTCAGA
* * **
101501938 -C-CACAACTCATGAGTTCAGA
1 TCACATAAATCATGAACTCAGA
101501958 TCACATAAATCATGAACTCAGA
1 TCACATAAATCATGAACTCAGA
* **
101501980 TCAC--AACTCATGAGTTCAGA
1 TCACATAAATCATGAACTCAGA
101502000 TCACATAA
1 TCACATAA
101502008 TTTCCTAGTG
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
20 32 0.58
21 2 0.04
22 21 0.38
ACGTcount: A:0.41, C:0.25, G:0.11, T:0.23
Consensus pattern (22 bp):
TCACATAAATCATGAACTCAGA
Found at i:101505098 original size:73 final size:73
Alignment explanation
Indices: 101504843--101505103 Score: 285
Period size: 73 Copynumber: 3.5 Consensus size: 73
101504833 TTTGAGCTAA
* * * * *
101504843 ACATATAATCATGTCAAGTTACTCGTCCGGGCTAAACCTTTATATAGACACATC-AATGGCTTA-
1 ACATAT-A-CATGTCAGGTTACCCGTCTGGGCTAAACCTTTATATCGACACATCAAATAGCTTAG
**** *
101504906 TTTGAGCTGA-
64 CCAAAG-TTAT
* *
101504916 ACATATAATCGTGTCAAGTTACCCGTCTGGGCTAAACCTTTATATCGACACATCAAATAGCTTAG
1 ACATAT-A-CATGTCAGGTTACCCGTCTGGGCTAAACCTTTATATCGACACATCAAATAGCTTAG
101504981 CCAAAGTTAT
64 CCAAAGTTAT
* * *
101504991 ACATATACATGTTAGGTTACCCGTCTAGGCTAAACCTTTATATCGACACATCAAATAGCTTGGCC
1 ACATATACATGTCAGGTTACCCGTCTGGGCTAAACCTTTATATCGACACATCAAATAGCTTAGCC
101505056 AAAGTTAT
66 AAAGTTAT
* * * *
101505064 ACATATACATGTCAGGTTACCCATCCGGGGTAAACGTTTA
1 ACATATACATGTCAGGTTACCCGTCTGGGCTAAACCTTTA
101505104 AAACGGCATC
Statistics
Matches: 164, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
73 145 0.88
74 11 0.07
75 8 0.05
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (73 bp):
ACATATACATGTCAGGTTACCCGTCTGGGCTAAACCTTTATATCGACACATCAAATAGCTTAGCC
AAAGTTAT
Found at i:101516349 original size:19 final size:20
Alignment explanation
Indices: 101516303--101516349 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
101516293 ATCGAGTGGT
*
101516303 TAATTAGGCTTTAATTAAGTG
1 TAATTA-GCTTTAATTAAGAG
101516324 -AATTTAGC-TTAATTAAGAG
1 TAA-TTAGCTTTAATTAAGAG
101516343 TAATTAG
1 TAATTAG
101516350 GAAAAAAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 14 0.61
20 6 0.26
21 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.40
Consensus pattern (20 bp):
TAATTAGCTTTAATTAAGAG
Found at i:101520012 original size:27 final size:27
Alignment explanation
Indices: 101519967--101520018 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
101519957 CGCCAACAGG
* * *
101519967 TCTGGTAAGATGGTGTACACCAGCAAA
1 TCTGGCAAGATAGTATACACCAGCAAA
101519994 TCTGGCAAGATAGTATACACCAGCA
1 TCTGGCAAGATAGTATACACCAGCA
101520019 GGTTTGGCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
TCTGGCAAGATAGTATACACCAGCAAA
Found at i:101520026 original size:27 final size:27
Alignment explanation
Indices: 101519953--101520026 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
101519943 GGCGAGCTAA
* * * *
101519953 TATACGCCAACAGGTCTGGTAAGATGG
1 TATACACCAGCAGGTCTGGCAAGATAG
* **
101519980 TGTACACCAGCAAATCTGGCAAGATAG
1 TATACACCAGCAGGTCTGGCAAGATAG
*
101520007 TATACACCAGCAGGTTTGGC
1 TATACACCAGCAGGTCTGGC
101520027 GAGACGATGT
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (27 bp):
TATACACCAGCAGGTCTGGCAAGATAG
Found at i:101520690 original size:9 final size:9
Alignment explanation
Indices: 101520676--101520752 Score: 100
Period size: 9 Copynumber: 8.6 Consensus size: 9
101520666 TTTATACAAA
101520676 TAATTCGGT
1 TAATTCGGT
101520685 TAATTCGGT
1 TAATTCGGT
* *
101520694 TAATTTGGG
1 TAATTCGGT
*
101520703 TAATTCGGG
1 TAATTCGGT
*
101520712 TAATTCGGG
1 TAATTCGGT
*
101520721 TAATTTGGT
1 TAATTCGGT
*
101520730 TAATTCGAT
1 TAATTCGGT
101520739 TAATTCGGT
1 TAATTCGGT
101520748 TAATT
1 TAATT
101520753 TTATGCTTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.25, C:0.08, G:0.23, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:101520715 original size:27 final size:27
Alignment explanation
Indices: 101520676--101520753 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
101520666 TTTATACAAA
101520676 TAATTCGGTTAATTCGGTTAATTTGGG
1 TAATTCGGTTAATTCGGTTAATTTGGG
* * *
101520703 TAATTCGGGTAATTCGGGTAATTTGGT
1 TAATTCGGTTAATTCGGTTAATTTGGG
*
101520730 TAATTCGATTAATTCGGTTAATTT
1 TAATTCGGTTAATTCGGTTAATTT
101520754 TATGCTTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.24, C:0.08, G:0.23, T:0.45
Consensus pattern (27 bp):
TAATTCGGTTAATTCGGTTAATTTGGG
Found at i:101524069 original size:124 final size:124
Alignment explanation
Indices: 101523849--101524097 Score: 471
Period size: 124 Copynumber: 2.0 Consensus size: 124
101523839 TTCCCTAGTG
*
101523849 GGTACCCCTGGATATGAATTGATGGATTTTTAATTTTGTACATTGTACTACATGAGCGTATCTAT
1 GGTACCCCTGGATATGAATTGATGGATTTTTAATTTTGTACACTGTACTACATGAGCGTATCTAT
101523914 CGATATTTCAAATAATTTCAACAGATAAAGTTTTGACATAGTTAAACTAAATTTGAAAT
66 CGATATTTCAAATAATTTCAACAGATAAAGTTTTGACATAGTTAAACTAAATTTGAAAT
*
101523973 GGTACCGCTGGATATGAATTGATGGATTTTTAATTTTGTACACTGTACTACATGAGCGTATCTAT
1 GGTACCCCTGGATATGAATTGATGGATTTTTAATTTTGTACACTGTACTACATGAGCGTATCTAT
*
101524038 CGATATTTCAAATAATTTCAACGGATAAAGTTTTGACATAGTTAAACTAAATTTGAAAT
66 CGATATTTCAAATAATTTCAACAGATAAAGTTTTGACATAGTTAAACTAAATTTGAAAT
101524097 G
1 G
101524098 ATTGATCATG
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 122 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.37
Consensus pattern (124 bp):
GGTACCCCTGGATATGAATTGATGGATTTTTAATTTTGTACACTGTACTACATGAGCGTATCTAT
CGATATTTCAAATAATTTCAACAGATAAAGTTTTGACATAGTTAAACTAAATTTGAAAT
Found at i:101525408 original size:48 final size:48
Alignment explanation
Indices: 101525337--101525432 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
101525327 TGTTCCGGCG
101525337 ATGGATATGGCTTAGGGTATTACAGGACAGCTTTGGTCAATAATATTC
1 ATGGATATGGCTTAGGGTATTACAGGACAGCTTTGGTCAATAATATTC
101525385 ATGGATATGGCTTAGGGTATTACAGGACAGCTTTGGTCAATAATATTC
1 ATGGATATGGCTTAGGGTATTACAGGACAGCTTTGGTCAATAATATTC
101525433 GCTCGACTAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (48 bp):
ATGGATATGGCTTAGGGTATTACAGGACAGCTTTGGTCAATAATATTC
Found at i:101527727 original size:29 final size:29
Alignment explanation
Indices: 101527685--101527741 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
101527675 TGATTACATT
101527685 TTAGAGGATATATCTTAATTCTGTCCCTA
1 TTAGAGGATATATCTTAATTCTGTCCCTA
* *
101527714 TTAGATGATATATCTTAATTTTGTCCCT
1 TTAGAGGATATATCTTAATTCTGTCCCT
101527742 GCTTTTTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (29 bp):
TTAGAGGATATATCTTAATTCTGTCCCTA
Found at i:101529451 original size:16 final size:18
Alignment explanation
Indices: 101529420--101529469 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 18
101529410 GTTTGACCAA
101529420 ATAAAATATTAAAAAT-TT
1 ATAAAATA-TAAAAATATT
101529438 ATAAAATA-AAAAATATT
1 ATAAAATATAAAAATATT
101529455 -TAAAATATAGAAAAT
1 ATAAAATATA-AAAAT
101529470 CAATTCAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 13 0.45
17 3 0.10
18 13 0.45
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
ATAAAATATAAAAATATT
Found at i:101529454 original size:25 final size:25
Alignment explanation
Indices: 101529422--101529469 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
101529412 TTGACCAAAT
* *
101529422 AAAATATTAAAAATTTATAAAATAA
1 AAAATATTAAAAATATAGAAAATAA
*
101529447 AAAATATTTAAAATATAGAAAAT
1 AAAATATTAAAAATATAGAAAAT
101529470 CAATTCAACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (25 bp):
AAAATATTAAAAATATAGAAAATAA
Found at i:101532155 original size:27 final size:27
Alignment explanation
Indices: 101532125--101532265 Score: 146
Period size: 27 Copynumber: 5.2 Consensus size: 27
101532115 GTGACGAAGT
*
101532125 CACCAGATACATATATTGTGGCAGAGC
1 CACCAGATACAAATATTGTGGCAGAGC
* *
101532152 CACCAGA-ACAGATATATATGGCAGAGC
1 CACCAGATACAAATAT-TGTGGCAGAGC
*
101532179 CACCAGAT-CAAATAATTGTGGCATAGC
1 CACCAGATACAAAT-ATTGTGGCAGAGC
*
101532206 CACCAG-GACAAATATATGTGGCAGAGC
1 CACCAGATACAAATAT-TGTGGCAGAGC
* * *
101532233 CACCGGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAAAT-ATTGTGGCAGAGC
101532260 CACCAG
1 CACCAG
101532266 TACGCTTCCT
Statistics
Matches: 95, Mismatches: 12, Indels: 14
0.79 0.10 0.12
Matches are distributed among these distances:
26 9 0.09
27 82 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGATACAAATATTGTGGCAGAGC
Found at i:101532197 original size:54 final size:54
Alignment explanation
Indices: 101532125--101532265 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 54
101532115 GTGACGAAGT
* * *
101532125 CACCAGAT-ACATATATTGTGGCAGAGCCACCAGAACAGATATATATGGCAGAGC
1 CACCAGATCAAATA-ATTGTGGCATAGCCACCAGAACAAATATATATGGCAGAGC
* *
101532179 CACCAGATCAAATAATTGTGGCATAGCCACCAGGACAAATATATGTGGCAGAGC
1 CACCAGATCAAATAATTGTGGCATAGCCACCAGAACAAATATATATGGCAGAGC
* *
101532233 CACCGGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAAATAATTGTGGCATAGCCACCAG
101532266 TACGCTTCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 75 0.95
55 4 0.05
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAAATAATTGTGGCATAGCCACCAGAACAAATATATATGGCAGAGC
Found at i:101537641 original size:22 final size:22
Alignment explanation
Indices: 101537614--101537659 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
101537604 AAAGCAATAT
*
101537614 TTAATCTTTTAAATCGATAATC
1 TTAATCTTTCAAATCGATAATC
* *
101537636 TTAATCTTTCATATTGATAATC
1 TTAATCTTTCAAATCGATAATC
101537658 TT
1 TT
101537660 TCTTTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.13, G:0.04, T:0.50
Consensus pattern (22 bp):
TTAATCTTTCAAATCGATAATC
Found at i:101552427 original size:20 final size:21
Alignment explanation
Indices: 101552394--101552435 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
101552384 TTTTTTATTT
*
101552394 ATTATTATAATTCAT-TTTAA
1 ATTATAATAATTCATATTTAA
*
101552414 ATTATAATATTTCATATTTAA
1 ATTATAATAATTCATATTTAA
101552435 A
1 A
101552436 AGAATCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTATAATAATTCATATTTAA
Found at i:101554549 original size:11 final size:11
Alignment explanation
Indices: 101554535--101554560 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
101554525 AAATTATTAT
101554535 AAAATAAAATA
1 AAAATAAAATA
101554546 AAAATAAAATA
1 AAAATAAAATA
101554557 AAAA
1 AAAA
101554561 AAATTTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:101554552 original size:16 final size:15
Alignment explanation
Indices: 101554533--101554563 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
101554523 ATAAATTATT
101554533 ATAAAATAAAATAAAA
1 ATAAAATAAAA-AAAA
101554549 ATAAAATAAAAAAAA
1 ATAAAATAAAAAAAA
101554564 TTTGATTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (15 bp):
ATAAAATAAAAAAAA
Found at i:101555983 original size:25 final size:25
Alignment explanation
Indices: 101555955--101556005 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
101555945 TAATTTCCAA
*
101555955 TGGGTTTTCTCGTAATGGAAAAGTT
1 TGGGCTTTCTCGTAATGGAAAAGTT
101555980 TGGGCTTTCTCGTAATGGAAAAGTT
1 TGGGCTTTCTCGTAATGGAAAAGTT
101556005 T
1 T
101556006 TTTTTTAACG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.10, G:0.27, T:0.39
Consensus pattern (25 bp):
TGGGCTTTCTCGTAATGGAAAAGTT
Found at i:101556300 original size:6 final size:6
Alignment explanation
Indices: 101556289--101556314 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
101556279 TTATTAATTT
101556289 TTTTAA TTTTAA TTTTAA TTTTAA TT
1 TTTTAA TTTTAA TTTTAA TTTTAA TT
101556315 ATTTTATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:101558664 original size:13 final size:13
Alignment explanation
Indices: 101558646--101558722 Score: 91
Period size: 13 Copynumber: 5.9 Consensus size: 13
101558636 TTCTTCATTC
101558646 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
101558659 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* * *
101558672 CTGTGGAAAATTG
1 CTTTTGAAAAGTG
* * *
101558685 CTTTCGAGAAGTA
1 CTTTTGAAAAGTG
*
101558698 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
101558711 CTTTTGAAAAGT
1 CTTTTGAAAAGT
101558723 AAAATGTCCA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 53 1.00
ACGTcount: A:0.30, C:0.09, G:0.25, T:0.36
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:101560146 original size:24 final size:24
Alignment explanation
Indices: 101560114--101560161 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
101560104 TAAAACATAA
101560114 AATAAAGGTTATCTTCCTCATTTT
1 AATAAAGGTTATCTTCCTCATTTT
*
101560138 AATAAAGGTTATCTTCCTTATTTT
1 AATAAAGGTTATCTTCCTCATTTT
101560162 TACTTCTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.08, T:0.48
Consensus pattern (24 bp):
AATAAAGGTTATCTTCCTCATTTT
Found at i:101562495 original size:49 final size:49
Alignment explanation
Indices: 101562398--101562495 Score: 117
Period size: 49 Copynumber: 2.0 Consensus size: 49
101562388 TGGTCATTTC
* * * *
101562398 ACGATGGTTATATGGTCATGAGTTGAAGTATAACTAGGGCTCCTAGTTG
1 ACGATGGTTATATGATCACGAGTTCAAGTATAACTAGAGCTCCTAGTTG
* * *
101562447 ACGATGGTTATGTGATCACGGGTTCAAGTATAACTTGAGC-CCTAAGTTG
1 ACGATGGTTATATGATCACGAGTTCAAGTATAACTAGAGCTCCT-AGTTG
101562496 GCGGTGATTG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
48 3 0.07
49 38 0.93
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.32
Consensus pattern (49 bp):
ACGATGGTTATATGATCACGAGTTCAAGTATAACTAGAGCTCCTAGTTG
Found at i:101562942 original size:49 final size:48
Alignment explanation
Indices: 101562859--101562973 Score: 128
Period size: 49 Copynumber: 2.3 Consensus size: 48
101562849 GTGGCATGAA
* *
101562859 ACTTGAACTCGTGATCGCATAACTATCGTCAACTA-GAGGCCC-AAGTTAT
1 ACTTGAACT-GTGACCGCATAACGATCGTCAACTAGGA-GCCCTAA-TTAT
101562908 ACTTGAATCTGTGACCGCATAACGATCG-CAAACTAGGAGCCCTAATTAT
1 ACTTGAA-CTGTGACCGCATAACGATCGTC-AACTAGGAGCCCTAATTAT
*
101562957 ACTTCAACATGTGACCG
1 ACTTGAAC-TGTGACCG
101562974 TATGACCATC
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
48 2 0.03
49 50 0.86
50 6 0.10
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (48 bp):
ACTTGAACTGTGACCGCATAACGATCGTCAACTAGGAGCCCTAATTAT
Found at i:101574192 original size:24 final size:24
Alignment explanation
Indices: 101574160--101574207 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
101574150 CGAAGGTATT
101574160 TAATGTTCGACCTTTACTTGTTGA
1 TAATGTTCGACCTTTACTTGTTGA
*
101574184 TAATGTTCGGCCTTTACTTGTTGA
1 TAATGTTCGACCTTTACTTGTTGA
101574208 CAAATCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.46
Consensus pattern (24 bp):
TAATGTTCGACCTTTACTTGTTGA
Found at i:101582781 original size:8 final size:8
Alignment explanation
Indices: 101582768--101582800 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
101582758 CAGCACCCAG
101582768 ATCACATA
1 ATCACATA
101582776 ATCACATA
1 ATCACATA
101582784 ATCACATA
1 ATCACATA
101582792 A-CACATA
1 ATCACATA
101582799 AT
1 AT
101582801 GACCCTAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (8 bp):
ATCACATA
Found at i:101584092 original size:16 final size:16
Alignment explanation
Indices: 101584073--101584124 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
101584063 ATTAAAAAAA
101584073 TTTAATAAAATATTAT
1 TTTAATAAAATATTAT
101584089 TTT-AT-AAA-A--A-
1 TTTAATAAAATATTAT
101584099 TTTAATAAAATATTAT
1 TTTAATAAAATATTAT
101584115 TTTAGATAAA
1 TTTA-ATAAA
101584125 TTTACATTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 13
0.69 0.00 0.31
Matches are distributed among these distances:
10 3 0.10
11 3 0.10
12 3 0.10
13 2 0.07
14 3 0.10
15 3 0.10
16 7 0.24
17 5 0.17
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TTTAATAAAATATTAT
Found at i:101584103 original size:26 final size:26
Alignment explanation
Indices: 101584068--101584128 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
101584058 TTTTTATTAA
*
101584068 AAAAATTTAATAAAATATTATTTTAT
1 AAAAATTTAATAAAATATTATTTTAG
101584094 AAAAATTTAATAAAATATTATTTTAG
1 AAAAATTTAATAAAATATTATTTTAG
*
101584120 ATAAATTTA
1 AAAAATTTA
101584129 CATTCTGTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (26 bp):
AAAAATTTAATAAAATATTATTTTAG
Found at i:101584114 original size:21 final size:24
Alignment explanation
Indices: 101584061--101584115 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 24
101584051 TTTTCATTTT
*
101584061 TTATTAAAAAAATTTAATAAAATA
1 TTATTATAAAAATTTAATAAAATA
101584085 TTATTTTATAAAAATTTAATAAAATA
1 TTA--TTATAAAAATTTAATAAAATA
101584111 TTATT
1 TTATT
101584116 TTAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 5 0.18
26 23 0.82
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
TTATTATAAAAATTTAATAAAATA
Found at i:101586032 original size:13 final size:13
Alignment explanation
Indices: 101586014--101586038 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101586004 ATTTCCCAGA
101586014 TTACATAATCAAT
1 TTACATAATCAAT
101586027 TTACATAATCAA
1 TTACATAATCAA
101586039 ATCAAATCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACATAATCAAT
Found at i:101587448 original size:10 final size:10
Alignment explanation
Indices: 101587433--101587481 Score: 62
Period size: 10 Copynumber: 4.9 Consensus size: 10
101587423 TATTTTAGCT
101587433 TTTATCTTTA
1 TTTATCTTTA
101587443 TTTATCTTTA
1 TTTATCTTTA
* *
101587453 ATTATATTTA
1 TTTATCTTTA
* *
101587463 ATTATCTGTA
1 TTTATCTTTA
101587473 TTTATCTTT
1 TTTATCTTT
101587482 TAGAATTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.65
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:101588268 original size:14 final size:15
Alignment explanation
Indices: 101588242--101588280 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
101588232 TTCAATCAAC
*
101588242 TTTTA-ATTCTGTCT
1 TTTTATATTTTGTCT
101588256 TTTT-TATTTTGTCT
1 TTTTATATTTTGTCT
101588270 TTTTATATTTT
1 TTTTATATTTT
101588281 TCCCCAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.13, C:0.08, G:0.05, T:0.74
Consensus pattern (15 bp):
TTTTATATTTTGTCT
Found at i:101589569 original size:28 final size:29
Alignment explanation
Indices: 101589538--101589597 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
101589528 AAAGTGATTT
* *
101589538 TTGACAAAAATGTCAATTAGGGA-TTAAA
1 TTGACAAAAATGTAAATTAAGGAGTTAAA
* *
101589566 TTGAGAAAAGTGTAAATTAAGGAGTTAAA
1 TTGACAAAAATGTAAATTAAGGAGTTAAA
101589595 TTG
1 TTG
101589598 TGAAATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.45, C:0.03, G:0.22, T:0.30
Consensus pattern (29 bp):
TTGACAAAAATGTAAATTAAGGAGTTAAA
Found at i:101593171 original size:19 final size:19
Alignment explanation
Indices: 101593147--101593184 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
101593137 TTGCAATTTA
101593147 AATTTTT-ATTTTATTTTCT
1 AATTTTTCA-TTTATTTTCT
101593166 AATTTTTCATTTATTTTCT
1 AATTTTTCATTTATTTTCT
101593185 TCTGACAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTCATTTATTTTCT
Found at i:101599712 original size:31 final size:32
Alignment explanation
Indices: 101599674--101599737 Score: 121
Period size: 31 Copynumber: 2.0 Consensus size: 32
101599664 TGTCTGAAAC
101599674 TTTGATGTACTTTTAGTTGAA-TTTCAATGTA
1 TTTGATGTACTTTTAGTTGAATTTTCAATGTA
101599705 TTTGATGTACTTTTAGTTGAATTTTCAATGTA
1 TTTGATGTACTTTTAGTTGAATTTTCAATGTA
101599737 T
1 T
101599738 AAATACTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.66
32 11 0.34
ACGTcount: A:0.25, C:0.06, G:0.16, T:0.53
Consensus pattern (32 bp):
TTTGATGTACTTTTAGTTGAATTTTCAATGTA
Found at i:101603456 original size:28 final size:29
Alignment explanation
Indices: 101603383--101603457 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
101603373 AAGCAACCTA
101603383 ATTT-TTA-TTTATTTTTTTATTTTTATT
1 ATTTATTATTTTATTTTTTTATTTTTATT
* * *
101603410 TTTTATTATCCTT-TCTTTTTA-TTTTATT
1 ATTTATTAT-TTTATTTTTTTATTTTTATT
101603438 ATTTATTATTTTATTTTTTT
1 ATTTATTATTTTATTTTTTT
101603458 GGGTATTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
27 5 0.13
28 24 0.63
29 7 0.18
30 2 0.05
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (29 bp):
ATTTATTATTTTATTTTTTTATTTTTATT
Found at i:101605283 original size:10 final size:10
Alignment explanation
Indices: 101605268--101605326 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
101605258 TATTTTAGCT
101605268 TTTATCTTTA
1 TTTATCTTTA
101605278 TTTATCTTTA
1 TTTATCTTTA
*
101605288 ATTATCTTTA
1 TTTATCTTTA
*
101605298 ATTATCTTTA
1 TTTATCTTTA
101605308 TTTAT-TTGTA
1 TTTATCTT-TA
101605318 TTTATCTTT
1 TTTATCTTT
101605327 TAGGATTTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
9 2 0.04
10 41 0.91
11 2 0.04
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:101605920 original size:16 final size:17
Alignment explanation
Indices: 101605894--101605925 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
101605884 GCGTCCTCTT
101605894 CCACTATAAGAAACTCA
1 CCACTATAAGAAACTCA
101605911 CCAC-ATAAGAAACTC
1 CCACTATAAGAAACTC
101605926 TCTCTTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.47, C:0.31, G:0.06, T:0.16
Consensus pattern (17 bp):
CCACTATAAGAAACTCA
Found at i:101605996 original size:17 final size:18
Alignment explanation
Indices: 101605965--101605998 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
101605955 TATTCTCTAT
*
101605965 TTTAATTTTCGCAATTTA
1 TTTAATTTTCACAATTTA
101605983 TTTAA-TTTCACAATTT
1 TTTAATTTTCACAATTT
101605999 CAATCAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.12, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTAATTTTCACAATTTA
Found at i:101608848 original size:20 final size:20
Alignment explanation
Indices: 101608823--101608866 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
101608813 GCATCAAATT
101608823 ATGCCATTGGGGGAGTACCG
1 ATGCCATTGGGGGAGTACCG
101608843 ATGCCATTGGGGGAGTACCG
1 ATGCCATTGGGGGAGTACCG
101608863 ATGC
1 ATGC
101608867 AAGATGAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.20, C:0.20, G:0.39, T:0.20
Consensus pattern (20 bp):
ATGCCATTGGGGGAGTACCG
Found at i:101611598 original size:24 final size:24
Alignment explanation
Indices: 101611571--101611616 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
101611561 TATTTGTAGC
* *
101611571 AATGCTGCGAATTGTATTTACAGA
1 AATGCTACGAACTGTATTTACAGA
*
101611595 AATGTTACGAACTGTATTTACA
1 AATGCTACGAACTGTATTTACA
101611617 AAAACATCGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (24 bp):
AATGCTACGAACTGTATTTACAGA
Found at i:101611682 original size:71 final size:72
Alignment explanation
Indices: 101611545--101611823 Score: 210
Period size: 71 Copynumber: 3.9 Consensus size: 72
101611535 ACTGTGTTGC
* * * * **
101611545 AAAATACTGTGAACTATATTTGTAGCAA-TGCTGCGAATTGTATTTACAGAAATGTTACGAACTG
1 AAAATATTGTGAACTATATTTGTAG-AATTACTGCGAACTGTATTTACATAAATGTCGCGAACTG
101611609 TATTTACA
65 TATTTACA
* * * * * * * *
101611617 AAAACATCGCGAACTAT-TTTGTAGAATTACTCCGAATTGTATTTGCATAAATGTCGTGAATTGT
1 AAAATATTGTGAACTATATTTGTAGAATTACTGCGAACTGTATTTACATAAATGTCGCGAACTGT
*
101611681 A--T-CGT
66 ATTTAC-A
* * * * ** * * * *
101611686 AGAATATTGTAAACTGTATTTGTAGAAATGTTGCGAACCGTATTTACAAAAATGTAGTGAACTGT
1 AAAATATTGTGAACTATATTTGTAGAATTACTGCGAACTGTATTTACATAAATGTCGCGAACTGT
101611751 ATTTACA
66 ATTTACA
* * * ** * *
101611758 AAAATGTTGTGAACTAT-TCTATAGAATTACTATGAACTGTATTTGCATAAATGTCGCGAATTGT
1 AAAATATTGTGAACTATATTTGTAGAATTACTGCGAACTGTATTTACATAAATGTCGCGAACTGT
101611822 AT
66 AT
101611824 CGTAGAATAT
Statistics
Matches: 154, Mismatches: 47, Indels: 13
0.72 0.22 0.06
Matches are distributed among these distances:
68 1 0.01
69 12 0.08
70 40 0.26
71 73 0.47
72 27 0.18
73 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (72 bp):
AAAATATTGTGAACTATATTTGTAGAATTACTGCGAACTGTATTTACATAAATGTCGCGAACTGT
ATTTACA
Found at i:101611707 original size:46 final size:46
Alignment explanation
Indices: 101611654--101611962 Score: 185
Period size: 46 Copynumber: 6.6 Consensus size: 46
101611644 TACTCCGAAT
* * *
101611654 TGTATTTGCATAAATGTCGTGAATTGTATCGTAGAATATTGTAAAC
1 TGTATTTGCATAAATGTCGCGAACTGTATCGTAGAATATTGTGAAC
* * * * * * *
101611700 TGTATTTGTAGAAATGTTGCGAACCGTAT-TTACAAAAATGTAGTGAAC
1 TGTATTTGCATAAATGTCGCGAACTGTATCGTA-GAATAT-T-GTGAAC
* * * * * * * *
101611748 TGTATTTACAAAAATGTTGTGAACTAT-TCTATAGAATTACTATGAAC
1 TGTATTTGCATAAATGTCGCGAACTGTATC-GTAGAA-TATTGTGAAC
* **
101611795 TGTATTTGCATAAATGTCGCGAATTGTATCGTAGAATATTGCAAAC
1 TGTATTTGCATAAATGTCGCGAACTGTATCGTAGAATATTGTGAAC
* *** * * *
101611841 TGTATTTAG-AAAAACACCGCTAACTGTTTTGTAGAATTATTGTGAAC
1 TGTATTT-GCATAAATGTCGCGAACTGTATCGTAGAA-TATTGTGAAC
* * * * * *
101611888 TGTATTTACAGAAATGTTGCGAATTGTATTGTAGAATATTGTGAAT
1 TGTATTTGCATAAATGTCGCGAACTGTATCGTAGAATATTGTGAAC
* * *
101611934 TATTTTTGCATAAATG-CTGCAAACTGTAT
1 TGTATTTGCATAAATGTC-GCGAACTGTAT
101611963 TTACAGAAAT
Statistics
Matches: 193, Mismatches: 59, Indels: 22
0.70 0.22 0.08
Matches are distributed among these distances:
45 2 0.01
46 89 0.46
47 68 0.35
48 31 0.16
49 3 0.02
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (46 bp):
TGTATTTGCATAAATGTCGCGAACTGTATCGTAGAATATTGTGAAC
Found at i:101611772 original size:24 final size:24
Alignment explanation
Indices: 101611692--101611772 Score: 99
Period size: 24 Copynumber: 3.4 Consensus size: 24
101611682 TCGTAGAATA
* ** *
101611692 TTGTAAACTGTATTTGTAGAAATG
1 TTGTGAACTGTATTTACAAAAATG
* *
101611716 TTGCGAACCGTATTTACAAAAATG
1 TTGTGAACTGTATTTACAAAAATG
*
101611740 TAGTGAACTGTATTTACAAAAATG
1 TTGTGAACTGTATTTACAAAAATG
101611764 TTGTGAACT
1 TTGTGAACT
101611773 ATTCTATAGA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.36
Consensus pattern (24 bp):
TTGTGAACTGTATTTACAAAAATG
Found at i:101611819 original size:141 final size:141
Alignment explanation
Indices: 101611547--101611847 Score: 406
Period size: 141 Copynumber: 2.1 Consensus size: 141
101611537 TGTGTTGCAA
* * * * ** *
101611547 AATACTGTGAACTATATTTGTAGCAATGCTGCGAATTGTATTTACAGAAATGTTACGAACTGTAT
1 AATATTGTAAACTGTATTTGTAGAAATGCTGCGAACCGTATTTACAAAAATGTTACGAACTGTAT
* * * * *
101611612 TTACAAAAACATCGCGAACTATTTTGTAGAATTACTCCGAATTGTATTTGCATAAATGTCGTGAA
66 TTACAAAAACATCGCGAACTATTCTATAGAATTACTACGAACTGTATTTGCATAAATGTCGCGAA
101611677 TTGTATCGTAG
131 TTGTATCGTAG
* *
101611688 AATATTGTAAACTGTATTTGTAGAAATGTTGCGAACCGTATTTACAAAAATG-TAGTGAACTGTA
1 AATATTGTAAACTGTATTTGTAGAAATGCTGCGAACCGTATTTACAAAAATGTTA-CGAACTGTA
** * * *
101611752 TTTACAAAAATGTTGTGAACTATTCTATAGAATTACTATGAACTGTATTTGCATAAATGTCGCGA
65 TTTACAAAAACATCGCGAACTATTCTATAGAATTACTACGAACTGTATTTGCATAAATGTCGCGA
101611817 ATTGTATCGTAG
130 ATTGTATCGTAG
*
101611829 AATATTGCAAACTGTATTT
1 AATATTGTAAACTGTATTT
101611848 AGAAAAACAC
Statistics
Matches: 139, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
140 2 0.01
141 137 0.99
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (141 bp):
AATATTGTAAACTGTATTTGTAGAAATGCTGCGAACCGTATTTACAAAAATGTTACGAACTGTAT
TTACAAAAACATCGCGAACTATTCTATAGAATTACTACGAACTGTATTTGCATAAATGTCGCGAA
TTGTATCGTAG
Found at i:101611915 original size:24 final size:24
Alignment explanation
Indices: 101611884--101611985 Score: 84
Period size: 24 Copynumber: 4.3 Consensus size: 24
101611874 GAATTATTGT
101611884 GAACTGTATTTACAGAAATGTTGC
1 GAACTGTATTTACAGAAATGTTGC
* * *
101611908 GAATTGTATTGT--AG-AATATTGT
1 GAACTGTATT-TACAGAAATGTTGC
* * * * * *
101611930 GAATTATTTTTGCATAAATGCTGC
1 GAACTGTATTTACAGAAATGTTGC
*
101611954 AAACTGTATTTACAGAAATGTTGC
1 GAACTGTATTTACAGAAATGTTGC
101611978 GAACTGTA
1 GAACTGTA
101611986 GTCCATAAGA
Statistics
Matches: 57, Mismatches: 17, Indels: 8
0.70 0.21 0.10
Matches are distributed among these distances:
21 1 0.02
22 14 0.25
23 3 0.05
24 38 0.67
25 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (24 bp):
GAACTGTATTTACAGAAATGTTGC
Found at i:101612073 original size:54 final size:54
Alignment explanation
Indices: 101612022--101612575 Score: 442
Period size: 54 Copynumber: 10.3 Consensus size: 54
101612012 TACAGAAGAC
* * * *
101612022 CGTGATCATAAATCAGCGGGCTGTAAGATTTGTAAAATCTAAAAAGTAGAAGGT
1 CGTGATCATAAATCAGCGGACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGT
* * *
101612076 CATGATCATAAATCAACGAGTA--GTAAAATTCGTAAAATCTCAAAAGTA-AATGGT
1 CGTGATCATAAATCAGCG-G-ACCGTAAGATTCGTAAAATCTCAAAAGTAGAA-GGT
** * * * **
101612130 TAT-AGTCGTAAATCAGCGGACCGTGAGATTTGTAAAATCTTGAAAGTAGAAGGT
1 CGTGA-TCATAAATCAGCGGACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGT
* * *
101612184 CGTGATCATGAATCAGCGAACCGTAAGATTCGTAAAATCTCAAAA-T--TAGGT
1 CGTGATCATAAATCAGCGGACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGT
** * ** * ** ** * *
101612235 CGTGATTGTATATCAAAGGACAGGGAGATTCGTAAAATCTTGAAAGTAGAAAGA
1 CGTGATCATAAATCAGCGGACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGT
* * * * *
101612289 CGTGATCTTAAATCAGCGAACCGTGAGATTCGTAAAATCTCGAAAGTAGAAAGT
1 CGTGATCATAAATCAGCGGACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGT
* * *
101612343 CGTGATCGTAAATTAGCGGACCGTGAGATTCGTAAAATCTCAAAAG-ATGAAGGT
1 CGTGATCATAAATCAGCGGACCGTAAGATTCGTAAAATCTCAAAAGTA-GAAGGT
* *** *
101612397 TGTGATCATAAATCAATAGACTGTAAGATTCGTAAAATCTCAAAAGTAGAAGGT
1 CGTGATCATAAATCAGCGGACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGT
* * * * * **
101612451 CATGATCGTAAATCAGCGAACGGTTAGATTCGTAAAATCTTGAAAGTAGAAGGT
1 CGTGATCATAAATCAGCGGACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGT
** * * * * * * *
101612505 TTTGATCGTAAATCAGCGAATCGTAAGA-TCTATAAAATTTCGAAAGTAGAAAGT
1 CGTGATCATAAATCAGCGGACCGTAAGATTC-GTAAAATCTCAAAAGTAGAAGGT
* **
101612559 AGTGATTGTAAATCAGC
1 CGTGATCATAAATCAGC
101612576 ATGACAACCC
Statistics
Matches: 401, Mismatches: 85, Indels: 28
0.78 0.17 0.05
Matches are distributed among these distances:
51 37 0.09
52 2 0.00
53 8 0.02
54 349 0.87
55 5 0.01
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (54 bp):
CGTGATCATAAATCAGCGGACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGT
Found at i:101612190 original size:108 final size:108
Alignment explanation
Indices: 101612024--101612575 Score: 528
Period size: 108 Copynumber: 5.1 Consensus size: 108
101612014 CAGAAGACCG
* * * * * ** *
101612024 TGATCATAAATCAGCGGGCTGTAAGATTTGTAAAATCTAAAAAGTAGAAGGTCATGATCATAAAT
1 TGATCGTAAATCAGCGGACCGTGAGATTCGTAAAATCTTGAAAGTAGAAGGTCGTGATCATAAAT
*** * *
101612089 CAACGAGTAGTAAAATTCGTAAAATCTCAAAAGTA-AATGGTTA
66 CAACGAACCGTAAGATTCGTAAAATCTCAAAAGTAGAA-GGTCA
* *
101612132 T-AGTCGTAAATCAGCGGACCGTGAGATTTGTAAAATCTTGAAAGTAGAAGGTCGTGATCATGAA
1 TGA-TCGTAAATCAGCGGACCGTGAGATTCGTAAAATCTTGAAAGTAGAAGGTCGTGATCATAAA
* * *
101612196 TCAGCGAACCGTAAGATTCGTAAAATCTCAAAA-T--TAGGTCG
65 TCAACGAACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGTCA
* * ** * * * * *
101612237 TGATTGTATATCAAAGGACAGGGAGATTCGTAAAATCTTGAAAGTAGAAAGACGTGATCTTAAAT
1 TGATCGTAAATCAGCGGACCGTGAGATTCGTAAAATCTTGAAAGTAGAAGGTCGTGATCATAAAT
* * * * *
101612302 CAGCGAACCGTGAGATTCGTAAAATCTCGAAAGTAGAAAGTCG
66 CAACGAACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGTCA
* ** *
101612345 TGATCGTAAATTAGCGGACCGTGAGATTCGTAAAATCTCAAAAG-ATGAAGGTTGTGATCATAAA
1 TGATCGTAAATCAGCGGACCGTGAGATTCGTAAAATCTTGAAAGTA-GAAGGTCGTGATCATAAA
* *
101612409 TCAA-TAGACTGTAAGATTCGTAAAATCTCAAAAGTAGAAGGTCA
65 TCAACGA-ACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGTCA
* * * ** *
101612453 TGATCGTAAATCAGCGAACGGTTAGATTCGTAAAATCTTGAAAGTAGAAGGTTTTGATCGTAAAT
1 TGATCGTAAATCAGCGGACCGTGAGATTCGTAAAATCTTGAAAGTAGAAGGTCGTGATCATAAAT
* * * * * *
101612518 CAGCGAATCGTAAGA-TCTATAAAATTTCGAAAGTAGAAAGT-A
66 CAACGAACCGTAAGATTC-GTAAAATCTCAAAAGTAGAAGGTCA
*
101612560 GTGATTGTAAATCAGC
1 -TGATCGTAAATCAGC
101612576 ATGACAACCC
Statistics
Matches: 365, Mismatches: 68, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
105 85 0.23
106 3 0.01
107 7 0.02
108 268 0.73
109 2 0.01
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (108 bp):
TGATCGTAAATCAGCGGACCGTGAGATTCGTAAAATCTTGAAAGTAGAAGGTCGTGATCATAAAT
CAACGAACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGGTCA
Found at i:101612573 original size:162 final size:161
Alignment explanation
Indices: 101612022--101612573 Score: 555
Period size: 162 Copynumber: 3.4 Consensus size: 161
101612012 TACAGAAGAC
* ** * * * **
101612022 CGTGATCATAAATCAGCGGGCTGTAAGATTTGTAAAATCTAAAAAGTAGAAGGTCA-TGATCATA
1 CGTGATCGTAAATCAGCGAACCGTAAGATTCGTAAAATCTCAAAAGTAGAA-GT-AGTGATTGTA
* * * *
101612086 AATC-AACGAGTAGTAAAATTCGTAAAATCTCAAAAGTA-AATGGTTAT-AGTCGTAAATCAGCG
64 AATCAAAGGA-CAGTAAGATTCGTAAAATCTCAAAAGTAGAA-GGTCATGA-TCGTAAATCAGCG
* *
101612148 GACCGTGAGATTTGTAAAATCTTGAAAGTAGAAGGT
126 AACCGTGAGATTCGTAAAATCTTGAAAGTAGAAGGT
* * * * *
101612184 CGTGATCATGAATCAGCGAACCGTAAGATTCGTAAAATCTCAAAATTAG--GTCGTGATTGTATA
1 CGTGATCGTAAATCAGCGAACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGTAGTGATTGTAAA
** ** * * * *
101612247 TCAAAGGACAGGGAGATTCGTAAAATCTTGAAAGTAGAAAGACGTGATCTTAAATCAGCGAACCG
66 TCAAAGGACAGTAAGATTCGTAAAATCTCAAAAGTAGAAGGTCATGATCGTAAATCAGCGAACCG
* *
101612312 TGAGATTCGTAAAATCTCGAAAGTAGAAAGT
131 TGAGATTCGTAAAATCTTGAAAGTAGAAGGT
* * * * **
101612343 CGTGATCGTAAATTAGCGGACCGTGAGATTCGTAAAATCTCAAAAG-ATGAAGGTTGTGATCATA
1 CGTGATCGTAAATCAGCGAACCGTAAGATTCGTAAAATCTCAAAAGTA-GAA-GTAGTGATTGTA
*
101612407 AATCAATA-GACTGTAAGATTCGTAAAATCTCAAAAGTAGAAGGTCATGATCGTAAATCAGCGAA
64 AATCAA-AGGACAGTAAGATTCGTAAAATCTCAAAAGTAGAAGGTCATGATCGTAAATCAGCGAA
* *
101612471 CGGTTAGATTCGTAAAATCTTGAAAGTAGAAGGT
128 CCGTGAGATTCGTAAAATCTTGAAAGTAGAAGGT
** * * * *
101612505 TTTGATCGTAAATCAGCGAATCGTAAGA-TCTATAAAATTTCGAAAGTAGAAAGTAGTGATTGTA
1 CGTGATCGTAAATCAGCGAACCGTAAGATTC-GTAAAATCTCAAAAGTAG-AAGTAGTGATTGTA
101612569 AATCA
64 AATCA
101612574 GCATGACAAC
Statistics
Matches: 316, Mismatches: 62, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
158 1 0.00
159 120 0.38
160 7 0.02
161 2 0.01
162 182 0.58
163 4 0.01
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (161 bp):
CGTGATCGTAAATCAGCGAACCGTAAGATTCGTAAAATCTCAAAAGTAGAAGTAGTGATTGTAAA
TCAAAGGACAGTAAGATTCGTAAAATCTCAAAAGTAGAAGGTCATGATCGTAAATCAGCGAACCG
TGAGATTCGTAAAATCTTGAAAGTAGAAGGT
Found at i:101617950 original size:18 final size:17
Alignment explanation
Indices: 101617910--101617959 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
101617900 ATTCAATTAA
* *
101617910 ATAAATAATTAACAATTT
1 ATAAATAA-TAAAAATAT
101617928 ATAAATAATAAAAATAT
1 ATAAATAATAAAAATAT
*
101617945 ATTAAAAAATAAAAA
1 A-TAAATAATAAAAA
101617960 ATCAATTCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 8 0.29
18 20 0.71
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (17 bp):
ATAAATAATAAAAATAT
Found at i:101619934 original size:22 final size:21
Alignment explanation
Indices: 101619900--101619940 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
101619890 ATTTTCCCAC
*
101619900 AATTGATAGAAAATGAAAAAAA
1 AATTGAAAGAAAA-GAAAAAAA
*
101619922 AATTGAAATAAAAGAAAAA
1 AATTGAAAGAAAAGAAAAA
101619941 CAGAAAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.17
Consensus pattern (21 bp):
AATTGAAAGAAAAGAAAAAAA
Found at i:101624979 original size:22 final size:20
Alignment explanation
Indices: 101624946--101624985 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
101624936 ATAATATAAG
101624946 AAAAATAATATTCCAAATTAA
1 AAAAATAATATT-CAAATTAA
*
101624967 AAAAATATTTATTCAAATT
1 AAAAATA-ATATTCAAATT
101624986 CAAATATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAATAATATTCAAATTAA
Found at i:101626497 original size:10 final size:10
Alignment explanation
Indices: 101626470--101626507 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
101626460 TTAAATTCTA
*
101626470 AAAGATAAAT
1 AAAGATAATT
101626480 ACAA-ATAATT
1 A-AAGATAATT
101626490 AAAGATAATT
1 AAAGATAATT
101626500 AAAGATAA
1 AAAGATAA
101626508 ATGAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAATT
Found at i:101627342 original size:97 final size:97
Alignment explanation
Indices: 101627172--101627354 Score: 260
Period size: 97 Copynumber: 1.9 Consensus size: 97
101627162 TATTTATTTA
* ** * *
101627172 TTTATTTTTACTTAGGATTATATTGAAACTTTTGACACGAAGAGAGATGACAGCCAAGTACCTCA
1 TTTATTTTTACTTAAGAACATATCGAAACTTTTGACACGAAGAGAGATGACAGCCAAGCACCTCA
*
101627237 TCCCAGTTACTTAGCCCAACATACTCCTAATT
66 TCCCAGTTACTCAGCCCAACATACTCCTAATT
* * *
101627269 TTTATTTTTTCTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
1 TTTATTTTTACTTAAGAACATATCGAAACTTTTGACACGAAGAGAGATGACAGCCAAGCACCTCA
*
101627334 -CCCTAGTTACTCAGGCCAACA
66 TCCC-AGTTACTCAGCCCAACA
101627355 CATTTTTAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
96 3 0.04
97 72 0.96
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (97 bp):
TTTATTTTTACTTAAGAACATATCGAAACTTTTGACACGAAGAGAGATGACAGCCAAGCACCTCA
TCCCAGTTACTCAGCCCAACATACTCCTAATT
Found at i:101628255 original size:4 final size:5
Alignment explanation
Indices: 101628219--101628257 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
101628209 TAATAAATAA
* *
101628219 TAAAA TAAAG TAAAT TAAAT TAAAT TAAAT T-AAT TAAAT
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT
101628258 AATAAATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (5 bp):
TAAAT
Found at i:101633963 original size:39 final size:39
Alignment explanation
Indices: 101633919--101634043 Score: 187
Period size: 39 Copynumber: 3.2 Consensus size: 39
101633909 TTTGAGATTG
*
101633919 AAAATATTCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
101633958 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
101633997 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
101634036 AAAATATC
1 AAAATATC
101634044 TGGGTTAAAG
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:101637632 original size:38 final size:38
Alignment explanation
Indices: 101637584--101637673 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 38
101637574 AGACCCTCAA
* * *
101637584 GCTTTGTGCTGGTAAAATATCCGAGTTAAATCCCGCAG
1 GCTTAGTGCTGGTAAAATATCAGAGATAAATCCCGCAG
* ** *
101637622 GCTTCGTGCTGGTATTATATCAGGGATAAATCCCGCAG
1 GCTTAGTGCTGGTAAAATATCAGAGATAAATCCCGCAG
*
101637660 GCCTAGTGCTGGTA
1 GCTTAGTGCTGGTA
101637674 TTATATTTGG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (38 bp):
GCTTAGTGCTGGTAAAATATCAGAGATAAATCCCGCAG
Found at i:101637743 original size:43 final size:43
Alignment explanation
Indices: 101637677--101637823 Score: 222
Period size: 43 Copynumber: 3.4 Consensus size: 43
101637667 GCTGGTATTA
* *
101637677 TATTTGGGCCTTCGTGCCTAGTAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
*
101637720 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
* * * * *
101637763 TATTTGGGTCTTCGTGCCTGGCAAGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
101637806 TATTCGGGCCTTCGTGCC
1 TATTCGGGCCTTCGTGCC
101637824 GGTGATGTGT
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 93 1.00
ACGTcount: A:0.10, C:0.22, G:0.33, T:0.35
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
Found at i:101637826 original size:27 final size:27
Alignment explanation
Indices: 101637788--101637850 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
101637778 GCCTGGCAAG
101637788 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGTATTCGGGC
101637815 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGTATTCGGGC
*
101637842 CTTTGTGCC
1 CTTCGTGCC
101637851 TAGCAGGCGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.06, C:0.24, G:0.35, T:0.35
Consensus pattern (27 bp):
CTTCGTGCCGGTGATGTGTATTCGGGC
Found at i:101638255 original size:45 final size:42
Alignment explanation
Indices: 101638188--101638295 Score: 119
Period size: 45 Copynumber: 2.5 Consensus size: 42
101638178 TTGACTTGAT
* * *
101638188 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATACCGGT--GA-AC
**
101638233 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATACCGGTGAAC
101638275 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
101638296 ACAGATGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 33 0.59
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATACCGGTGAAC
Found at i:101641900 original size:19 final size:20
Alignment explanation
Indices: 101641876--101641923 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
101641866 TAAATTCTAA
101641876 AAGATAAATACAA-ATAAAT-
1 AAGATAAATA-AAGATAAATG
*
101641895 AAGATAATTAAAGATAAATG
1 AAGATAAATAAAGATAAATG
*
101641915 AAAATAAAT
1 AAGATAAAT
101641924 CCTAAAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 2 0.08
19 15 0.62
20 7 0.29
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (20 bp):
AAGATAAATAAAGATAAATG
Done.