Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 304 of 362
Found at i:101994804 original size:13 final size:13
Alignment explanation
Indices: 101994786--101994822 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
101994776 GAAAAAGGGA
101994786 CACGCCCGTGTGC
1 CACGCCCGTGTGC
101994799 CACGCCCGTGTGC
1 CACGCCCGTGTGC
101994812 CACGCCCGTGT
1 CACGCCCGTGT
101994823 TTTCCATACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.08, C:0.46, G:0.30, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGC
Found at i:101997311 original size:29 final size:29
Alignment explanation
Indices: 101997248--101997355 Score: 139
Period size: 29 Copynumber: 3.8 Consensus size: 29
101997238 TTCACATACC
* * *
101997248 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
101997276 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
101997305 TGTATATGGCCTATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
101997334 TTTATATGGCCCATTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
101997356 GTCACATTGA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.25
29 50 0.72
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:101997350 original size:58 final size:57
Alignment explanation
Indices: 101997245--101997355 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 57
101997235 AATTTCACAT
* *
101997245 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
101997302 ACCTGTATATGGCCTATTAGGCCCAAATCACATTTATATGGCCCATTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
101997356 GTCACATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 21 0.44
58 27 0.56
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:102008491 original size:24 final size:24
Alignment explanation
Indices: 102008459--102008508 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
102008449 AAACATGGGG
102008459 TAAAAATATGTATAATTTACAGTT
1 TAAAAATATGTATAATTTACAGTT
*
102008483 TAAAAATATGTATAATTTACATTT
1 TAAAAATATGTATAATTTACAGTT
102008507 TA
1 TA
102008509 TCAACCACGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (24 bp):
TAAAAATATGTATAATTTACAGTT
Found at i:102012646 original size:38 final size:39
Alignment explanation
Indices: 102012587--102012675 Score: 108
Period size: 40 Copynumber: 2.3 Consensus size: 39
102012577 TTATCTCCGT
* * *
102012587 CCAACCCAACACACCATGTAT-GGATAAAATCGACCCAC
1 CCAACCCTACACACCAAGTATGGGATAAAATCAACCCAC
* * *
102012625 CCAGCCCTACACACTAAGTATGGGGATAAAATCAACCCAT
1 CCAACCCTACACACCAAGTAT-GGGATAAAATCAACCCAC
102012665 CCAACCCTACA
1 CCAACCCTACA
102012676 TGCCAAAAGG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 17 0.40
40 25 0.60
ACGTcount: A:0.38, C:0.36, G:0.11, T:0.15
Consensus pattern (39 bp):
CCAACCCTACACACCAAGTATGGGATAAAATCAACCCAC
Found at i:102047964 original size:29 final size:29
Alignment explanation
Indices: 102047932--102047991 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
102047922 AATTTGACAG
102047932 GTTCGACCACAGGTGTTAGACACGGGCGT
1 GTTCGACCACAGGTGTTAGACACGGGCGT
*
102047961 GTTCGACCACAGGTGTTAGACACGGGTGT
1 GTTCGACCACAGGTGTTAGACACGGGCGT
102047990 GT
1 GT
102047992 CACACGCCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.20, C:0.22, G:0.35, T:0.23
Consensus pattern (29 bp):
GTTCGACCACAGGTGTTAGACACGGGCGT
Found at i:102054026 original size:27 final size:27
Alignment explanation
Indices: 102053991--102054052 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
102053981 ATTCACTAAA
*
102053991 ATACTCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
102054018 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
102054044 ATACCCCTA
1 ATACCCCTA
102054053 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 22 0.71
27 7 0.23
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:102054196 original size:27 final size:26
Alignment explanation
Indices: 102054158--102054270 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
102054148 GAGGAAGCAT
102054158 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCAC-AATATCTGA
*
102054185 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTG-A
* *
102054213 TCTGGTGGTTCTGCCACAATATCTATA
1 TCTGGTGGCTCTGCCACAATATCT-GA
* * *
102054240 TCTGGTGACTCTGTCACAATATCTGT
1 TCTGGTGGCTCTGCCACAATATCTGA
102054266 TCTGG
1 TCTGG
102054271 CAGCCAAGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.07
27 54 0.72
28 16 0.21
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGGCTCTGCCACAATATCTGA
Found at i:102054265 original size:54 final size:54
Alignment explanation
Indices: 102054157--102054270 Score: 160
Period size: 55 Copynumber: 2.1 Consensus size: 54
102054147 GGAGGAAGCA
*
102054157 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATCTG
* * *
102054211 TTTCTGGTGGTTCTGCCAC-AATATCTATATCTGGTGACTCTGTCAC-AATATCTG
1 -TTCTGGTGGCTCTGCCACAAATATCT-GATCTGGTGACTCTGCCACAAATATCTG
102054265 TTCTGG
1 TTCTGG
102054271 CAGCCAAGCT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
53 6 0.11
54 15 0.28
55 33 0.61
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (54 bp):
TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATCTG
Found at i:102056455 original size:114 final size:114
Alignment explanation
Indices: 102056252--102056490 Score: 399
Period size: 114 Copynumber: 2.1 Consensus size: 114
102056242 CACACTTCAA
*
102056252 ATCATTTCATGACGCAAGAATGAAAATCATAAACTCTTTGCCCAGCGCAAGCTGAACCAGAACTG
1 ATCATATCATGACGCAAGAATGAAAATCATAAACTCTTTGCCCAGCGCAAGCTGAACCAGAACTG
*
102056317 ATGCTTCAGTTGACAATGTCTTCAACTGATTACCACTTTATTAATAATT
66 ATGCTTCAGTTGACAATGTCTTCAACTGATGACCACTTTATTAATAATT
* * * *
102056366 ATCATGTCATGACGCATGACTGAAAATCATAAACTCTTTG-CCAGGCGCAGGCTGAACCAGAACT
1 ATCATATCATGACGCAAGAATGAAAATCATAAACTCTTTGCCCA-GCGCAAGCTGAACCAGAACT
*
102056430 GATGCTTCAGTTGACAATGTTTTCAACTGATGACCACTTTATTAATAATT
65 GATGCTTCAGTTGACAATGTCTTCAACTGATGACCACTTTATTAATAATT
102056480 ATCATATCATG
1 ATCATATCATG
102056491 CAGACTTCAC
Statistics
Matches: 117, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
113 3 0.03
114 114 0.97
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (114 bp):
ATCATATCATGACGCAAGAATGAAAATCATAAACTCTTTGCCCAGCGCAAGCTGAACCAGAACTG
ATGCTTCAGTTGACAATGTCTTCAACTGATGACCACTTTATTAATAATT
Found at i:102060198 original size:28 final size:28
Alignment explanation
Indices: 102060158--102060228 Score: 124
Period size: 28 Copynumber: 2.5 Consensus size: 28
102060148 GAATCATTCG
102060158 ATATTTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
* *
102060186 ATATCTCGTACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
102060214 ATATTTCGCACACTA
1 ATATTTCGCACACTA
102060229 CGTGCCATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGTCATTCTCA
Found at i:102060316 original size:40 final size:40
Alignment explanation
Indices: 102060272--102060349 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
102060262 TGTACATAGT
* **
102060272 CAAAGCTATCTCAAATTGCACACTAAGTGCCAAATTTAGC
1 CAAAGCTATATCAAACCGCACACTAAGTGCCAAATTTAGC
* *
102060312 CAAAGCTATATCGAACCGCACACTAAGTGCCATATTTA
1 CAAAGCTATATCAAACCGCACACTAAGTGCCAAATTTA
102060350 ACCGATATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.24
Consensus pattern (40 bp):
CAAAGCTATATCAAACCGCACACTAAGTGCCAAATTTAGC
Found at i:102074674 original size:23 final size:22
Alignment explanation
Indices: 102074637--102074681 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
102074627 GAGAGGCATT
102074637 GGCATGGAAATGTCATGAGGATG
1 GGCATGGAAATGTCATG-GGATG
102074660 GGCATGGTAAA-GTCATGGGATG
1 GGCATGG-AAATGTCATGGGATG
102074682 AAGTTTCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.24
23 13 0.62
24 3 0.14
ACGTcount: A:0.29, C:0.09, G:0.40, T:0.22
Consensus pattern (22 bp):
GGCATGGAAATGTCATGGGATG
Found at i:102078122 original size:23 final size:23
Alignment explanation
Indices: 102078093--102078152 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
102078083 AGGTTATGAG
**
102078093 AAGAGAATGAATTTAGGTTTTAC
1 AAGAGAATGAATTTAGGAATTAC
*
102078116 GAGAGAATGAATTTAGGAATTAC
1 AAGAGAATGAATTTAGGAATTAC
*
102078139 AAAAGAATGAATTT
1 AAGAGAATGAATTT
102078153 GGGAGTTTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.22, T:0.30
Consensus pattern (23 bp):
AAGAGAATGAATTTAGGAATTAC
Found at i:102079695 original size:27 final size:27
Alignment explanation
Indices: 102079677--102080022 Score: 460
Period size: 27 Copynumber: 12.9 Consensus size: 27
102079667 TTTACCAAAT
* * *
102079677 AGGGGTATTACGTTTATTTTACCTTAC
1 AGGGGTATTACGGTCATTTTACCCTAC
* *
102079704 AGGAGCATTACGGTCATTTTACCCTAC
1 AGGGGTATTACGGTCATTTTACCCTAC
* *
102079731 AGGGGCATTACGATCATTTTACCCTAC
1 AGGGGTATTACGGTCATTTTACCCTAC
* *
102079758 AAGGGTATTACGGTCATTTTACCCTAT
1 AGGGGTATTACGGTCATTTTACCCTAC
* *
102079785 AAGGGTATTACGGTCATTTTACCCTAT
1 AGGGGTATTACGGTCATTTTACCCTAC
* *
102079812 AGGGGAATTACAGTCATTTTACCCTAC
1 AGGGGTATTACGGTCATTTTACCCTAC
* * *
102079839 AAGGGCATTA-GGTCATTTTATCCTAC
1 AGGGGTATTACGGTCATTTTACCCTAC
*
102079865 ATGGGTATTACGGTCATTTTACCCTAC
1 AGGGGTATTACGGTCATTTTACCCTAC
* *
102079892 AGGGGCATTACGATCATTTTACCCTAC
1 AGGGGTATTACGGTCATTTTACCCTAC
* *
102079919 AAGGGTATTACGGTCATTTTACCCTAT
1 AGGGGTATTACGGTCATTTTACCCTAC
*
102079946 AGGGGTATTACGGTCATTTTACCCTAT
1 AGGGGTATTACGGTCATTTTACCCTAC
* *
102079973 AGGGGAATTACAGTCATTTTACCCTAC
1 AGGGGTATTACGGTCATTTTACCCTAC
*
102080000 AAGGGTATTACGGTCATTTTACC
1 AGGGGTATTACGGTCATTTTACC
102080023 TTTTTAGGGT
Statistics
Matches: 282, Mismatches: 36, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 22 0.08
27 260 0.92
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
AGGGGTATTACGGTCATTTTACCCTAC
Found at i:102079888 original size:161 final size:162
Alignment explanation
Indices: 102079710--102080020 Score: 597
Period size: 161 Copynumber: 1.9 Consensus size: 162
102079700 TTACAGGAGC
102079710 ATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCCTACAAGGGTATTACGGTCAT
1 ATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCCTACAAGGGTATTACGGTCAT
102079775 TTTACCCTATAAGGGTATTACGGTCATTTTACCCTATAGGGGAATTACAGTCATTTTACCCTACA
66 TTTACCCTATAAGGGTATTACGGTCATTTTACCCTATAGGGGAATTACAGTCATTTTACCCTACA
102079840 AGGGCATTA-GGTCATTTTATCCTACATGGGT
131 AGGGCATTACGGTCATTTTATCCTACATGGGT
102079871 ATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCCTACAAGGGTATTACGGTCAT
1 ATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCCTACAAGGGTATTACGGTCAT
*
102079936 TTTACCCTATAGGGGTATTACGGTCATTTTACCCTATAGGGGAATTACAGTCATTTTACCCTACA
66 TTTACCCTATAAGGGTATTACGGTCATTTTACCCTATAGGGGAATTACAGTCATTTTACCCTACA
*
102080001 AGGGTATTACGGTCATTTTA
131 AGGGCATTACGGTCATTTTA
102080021 CCTTTTTAGG
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
161 137 0.93
162 10 0.07
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (162 bp):
ATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCCTACAAGGGTATTACGGTCAT
TTTACCCTATAAGGGTATTACGGTCATTTTACCCTATAGGGGAATTACAGTCATTTTACCCTACA
AGGGCATTACGGTCATTTTATCCTACATGGGT
Found at i:102087736 original size:25 final size:24
Alignment explanation
Indices: 102087638--102087739 Score: 105
Period size: 25 Copynumber: 4.1 Consensus size: 24
102087628 AGCTTTCTGA
*
102087638 TATTTAGCTCACATGAGCTTCCCAA
1 TATTTAGCTCACATGAGCTTCCC-G
**
102087663 TATTTAGCTTGCATGAGCTTCCCG
1 TATTTAGCTCACATGAGCTTCCCG
* * * * *
102087687 ATACTCAGCTCCCATTACCTTCCCG
1 -TATTTAGCTCACATGAGCTTCCCG
102087712 TCATTTAGCTCACATGAGCTTCCCG
1 T-ATTTAGCTCACATGAGCTTCCCG
102087737 TAT
1 TAT
102087740 GCAGCTCGGA
Statistics
Matches: 61, Mismatches: 14, Indels: 5
0.76 0.17 0.06
Matches are distributed among these distances:
24 3 0.05
25 58 0.95
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.33
Consensus pattern (24 bp):
TATTTAGCTCACATGAGCTTCCCG
Found at i:102088226 original size:15 final size:15
Alignment explanation
Indices: 102088194--102088222 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
102088184 ATTTTCTTTG
102088194 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
102088209 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
102088223 ATTTTCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:102091727 original size:22 final size:22
Alignment explanation
Indices: 102091702--102091745 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
102091692 GGTTGACATG
102091702 TTCTTAAATTGTTATTTGAGGT
1 TTCTTAAATTGTTATTTGAGGT
102091724 TTCTTAAATTGTTATTTGAGGT
1 TTCTTAAATTGTTATTTGAGGT
102091746 GCCTAAGGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.05, G:0.18, T:0.55
Consensus pattern (22 bp):
TTCTTAAATTGTTATTTGAGGT
Found at i:102097195 original size:21 final size:21
Alignment explanation
Indices: 102097169--102097216 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
102097159 AACTCCCTTC
102097169 GATGTCAC-AACATAACCTAGG
1 GATGTCACGAA-ATAACCTAGG
* *
102097190 GATGTCACGAAATAACTTGGG
1 GATGTCACGAAATAACCTAGG
102097211 GATGTC
1 GATGTC
102097217 GCGATACACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (21 bp):
GATGTCACGAAATAACCTAGG
Found at i:102097331 original size:20 final size:20
Alignment explanation
Indices: 102097306--102097347 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
102097296 ATCACCTCTG
102097306 TATGGGAAATAATTATAAGT
1 TATGGGAAATAATTATAAGT
102097326 TATGGGAAATAATTATAAGT
1 TATGGGAAATAATTATAAGT
102097346 TA
1 TA
102097348 GGGGCGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.36
Consensus pattern (20 bp):
TATGGGAAATAATTATAAGT
Found at i:102099487 original size:22 final size:23
Alignment explanation
Indices: 102099461--102099512 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
102099451 CTTTAGATGA
102099461 GATAAAAA-GGAAAAACGCAATG
1 GATAAAAATGGAAAAACGCAATG
* *
102099483 GATAAAAATGGAGAAAGGCAATG
1 GATAAAAATGGAAAAACGCAATG
102099506 GATAAAA
1 GATAAAA
102099513 TGTTTATGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 8 0.30
23 19 0.70
ACGTcount: A:0.58, C:0.06, G:0.25, T:0.12
Consensus pattern (23 bp):
GATAAAAATGGAAAAACGCAATG
Found at i:102103735 original size:14 final size:14
Alignment explanation
Indices: 102103716--102103744 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
102103706 ATCAATAGAG
102103716 TTCATACAAACCTC
1 TTCATACAAACCTC
102103730 TTCATACAAACCTC
1 TTCATACAAACCTC
102103744 T
1 T
102103745 ATGAACTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (14 bp):
TTCATACAAACCTC
Found at i:102105745 original size:54 final size:54
Alignment explanation
Indices: 102105663--102105772 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
102105653 CAGATCGCAG
102105663 ATTCAAAACAAAAGAACCTGGAGGACAGATCTATGAAATGTCACTTACCTCACT
1 ATTCAAAACAAAAGAACCTGGAGGACAGATCTATGAAATGTCACTTACCTCACT
*
102105717 ATTCAAAACAAAAGAACCTGGAGGACAGATCTATGAAATGTCACTTACTTCACT
1 ATTCAAAACAAAAGAACCTGGAGGACAGATCTATGAAATGTCACTTACCTCACT
102105771 AT
1 AT
102105773 CACTTCCACG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.24
Consensus pattern (54 bp):
ATTCAAAACAAAAGAACCTGGAGGACAGATCTATGAAATGTCACTTACCTCACT
Found at i:102108104 original size:27 final size:26
Alignment explanation
Indices: 102108061--102108128 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 26
102108051 ATATTAGTTA
* *
102108061 TATATTACTAT-TA-TTATCCATTATT
1 TATATTA-TATATATTTATCCATAAAT
* *
102108086 TTTATTATCATATATTTATCTATAAAT
1 TATATTAT-ATATATTTATCCATAAAT
102108113 TATATTATATATATTT
1 TATATTATATATATTT
102108129 TATTTATATA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
24 1 0.03
25 8 0.23
26 10 0.29
27 16 0.46
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (26 bp):
TATATTATATATATTTATCCATAAAT
Found at i:102108130 original size:27 final size:25
Alignment explanation
Indices: 102108086--102108171 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 25
102108076 ATCCATTATT
102108086 TTTATTATCATATA-TTTATCTATAAA
1 TTTATTAT-ATATATTTTAT-TATAAA
*
102108112 TTATATTATATATATTTTATTTATATA
1 TT-TATTATATATATTTTA-TTATAAA
*
102108139 TTTCTT-TATATATTTT-TTATAAAA
1 TTTATTATATATATTTTATTAT-AAA
102108163 TTGTATTAT
1 TT-TATTAT
102108172 TATTTACTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
23 4 0.08
24 4 0.08
25 13 0.26
26 11 0.22
27 17 0.34
28 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (25 bp):
TTTATTATATATATTTTATTATAAA
Found at i:102108148 original size:12 final size:11
Alignment explanation
Indices: 102108120--102108159 Score: 53
Period size: 12 Copynumber: 3.4 Consensus size: 11
102108110 AATTATATTA
102108120 TATATATTTTATT
1 TATATA-TTT-TT
102108133 TATATATTTCTT
1 TATATATTT-TT
102108145 TATATATTTTT
1 TATATATTTTT
102108156 TATA
1 TATA
102108160 AAATTGTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 6 0.23
12 14 0.54
13 6 0.23
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (11 bp):
TATATATTTTT
Found at i:102108172 original size:20 final size:21
Alignment explanation
Indices: 102108149--102108188 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
102108139 TTTCTTTATA
*
102108149 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
102108169 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
102108189 AATGGAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:102108528 original size:18 final size:17
Alignment explanation
Indices: 102108491--102108541 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
102108481 TATTATACGT
* * *
102108491 ATACCATATTATATTTC
1 ATACTATATTTTATTAC
102108508 ATACTATATTTTTATTAC
1 ATACTATA-TTTTATTAC
102108526 ATACTATATTTTATTA
1 ATACTATATTTTATTA
102108542 TTCAATATTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 15 0.50
18 15 0.50
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (17 bp):
ATACTATATTTTATTAC
Found at i:102108662 original size:10 final size:10
Alignment explanation
Indices: 102108647--102108704 Score: 66
Period size: 10 Copynumber: 5.7 Consensus size: 10
102108637 TGCAAAATAC
102108647 TTATTATATT
1 TTATTATATT
102108657 TTATTAT-TT
1 TTATTATATT
102108666 TATATTATATT
1 T-TATTATATT
102108677 TCT-TTATATT
1 T-TATTATATT
102108687 TTATTCATATT
1 TTATT-ATATT
*
102108698 ATATTAT
1 TTATTAT
102108705 TATACATAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 4 0.10
10 25 0.60
11 13 0.31
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (10 bp):
TTATTATATT
Found at i:102108668 original size:15 final size:15
Alignment explanation
Indices: 102108650--102108707 Score: 64
Period size: 15 Copynumber: 3.7 Consensus size: 15
102108640 AAAATACTTA
102108650 TTATATTTTATTATT
1 TTATATTTTATTATT
*
102108665 TTATATTATATT-TCT
1 TTATATTTTATTAT-T
*
102108680 TTATATTTTATTCATA
1 TTATATTTTATT-ATT
102108696 TTATATTATTAT
1 TTATATT-TTAT
102108708 ACATAACTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
14 1 0.03
15 23 0.64
16 7 0.19
17 5 0.14
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTTATTATT
Found at i:102108701 original size:5 final size:5
Alignment explanation
Indices: 102108648--102108704 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
102108638 GCAAAATACT
* * * *
102108648 TATTA TATTT TATTA TTTTA TATTA TATT- TCTTTA TATTT TATTCA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA T-ATTA TATTA TATT-A TATTA
102108699 TATTA T
1 TATTA T
102108705 TATACATAAC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
4 1 0.02
5 35 0.85
6 5 0.12
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (5 bp):
TATTA
Found at i:102114344 original size:32 final size:32
Alignment explanation
Indices: 102114303--102114374 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
102114293 AACTCTGTTA
102114303 CAATCTCCATTCATTATGCTACTTTGATTCAC
1 CAATCTCCATTCATTATGCTACTTTGATTCAC
*
102114335 CAATCTCCATTCATTATGCTATTTTGATTCAC
1 CAATCTCCATTCATTATGCTACTTTGATTCAC
102114367 C-ATCTCCA
1 CAATCTCCA
102114375 GAGGGTTAGC
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 7 0.18
32 32 0.82
ACGTcount: A:0.25, C:0.29, G:0.06, T:0.40
Consensus pattern (32 bp):
CAATCTCCATTCATTATGCTACTTTGATTCAC
Found at i:102119727 original size:10 final size:10
Alignment explanation
Indices: 102119700--102119749 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
102119690 TTAAATTCTA
102119700 AAAGATAAAT
1 AAAGATAAAT
*
102119710 ATAA-ATAATT
1 A-AAGATAAAT
102119720 AAAGATAAAT
1 AAAGATAAAT
102119730 AAAGATAAAT
1 AAAGATAAAT
*
102119740 AAAAATAAAT
1 AAAGATAAAT
102119750 CCTAAAATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:102121495 original size:18 final size:19
Alignment explanation
Indices: 102121472--102121507 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
102121462 TACAAATATA
102121472 TATAAATT-ATAAAGAAAT
1 TATAAATTGATAAAGAAAT
*
102121490 TATAAATTGTTAAAGAAA
1 TATAAATTGATAAAGAAA
102121508 ATTTTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (19 bp):
TATAAATTGATAAAGAAAT
Found at i:102123103 original size:139 final size:139
Alignment explanation
Indices: 102122914--102123192 Score: 443
Period size: 139 Copynumber: 2.0 Consensus size: 139
102122904 TGTGTTGATG
* * *
102122914 CATTTTAATTTTAACCAGCTTTCAACCATGTCTATGAGTATTTACCCATGGGAAATGGGGAAAGC
1 CATTTTAATTTTAACCAGCTTACAACCATGTCTACGAGTATTTACCCATGGGAAATCGGGAAAGC
* *
102122979 GTCTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTATAATTTTCCAAAGTCGCG
66 ATCTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTCGCG
102123044 CCTTTTCTT
131 CCTTTTCTT
* * * *
102123053 CATTTTAATTTTAATCAG-TGTACAACCATGTCTACGTGTTTTTATCCATGGGAAATCGGGAAAG
1 CATTTTAATTTTAACCAGCT-TACAACCATGTCTACGAGTATTTACCCATGGGAAATCGGGAAAG
* *
102123117 CATCTTGTTTCTGTGCATGCATGTTAGTGATGTGCTAAATGAATGCTACAATTTTCCAAAGTTGC
65 CATCTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTCGC
102123182 GCCTTTTCTT
130 GCCTTTTCTT
102123192 C
1 C
102123193 TTCATTTAGG
Statistics
Matches: 128, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
138 1 0.01
139 127 0.99
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (139 bp):
CATTTTAATTTTAACCAGCTTACAACCATGTCTACGAGTATTTACCCATGGGAAATCGGGAAAGC
ATCTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTCGCG
CCTTTTCTT
Found at i:102124685 original size:11 final size:10
Alignment explanation
Indices: 102124665--102124726 Score: 56
Period size: 10 Copynumber: 6.3 Consensus size: 10
102124655 TATAAAAACT
102124665 AAAAATTCTA
1 AAAAATTCTA
102124675 AAAACATTCTA
1 AAAA-ATTCTA
* *
102124686 AAGAA-TATA
1 AAAAATTCTA
*
102124695 AAAAA-GCTA
1 AAAAATTCTA
*
102124704 AAAAATTTTA
1 AAAAATTCTA
*
102124714 AAAACTTCTA
1 AAAAATTCTA
102124724 AAA
1 AAA
102124727 TAATAATTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
9 14 0.34
10 18 0.44
11 9 0.22
ACGTcount: A:0.61, C:0.10, G:0.03, T:0.26
Consensus pattern (10 bp):
AAAAATTCTA
Found at i:102124723 original size:38 final size:36
Alignment explanation
Indices: 102124653--102124725 Score: 103
Period size: 39 Copynumber: 2.0 Consensus size: 36
102124643 ATTTTTTTAA
102124653 AATATAAAAACTAAAAATTCTAAAAACATTCTAAAG
1 AATATAAAAACTAAAAATTCTAAAAACATTCTAAAG
*
102124689 AATATAAAAAAGCTAAAAAATTTTAAAAAC-TTCTAAA
1 AATAT-AAAAA-CT-AAAAATTCTAAAAACATTCTAAA
102124726 ATAATAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
36 5 0.15
37 5 0.15
38 9 0.27
39 14 0.42
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.26
Consensus pattern (36 bp):
AATATAAAAACTAAAAATTCTAAAAACATTCTAAAG
Found at i:102124918 original size:16 final size:16
Alignment explanation
Indices: 102124877--102124918 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
102124867 AACTCAAACA
102124877 ATTTCACTCG-ATTCC
1 ATTTCACTCGAATTCC
* * *
102124892 ACTTGACTCGAATTTC
1 ATTTCACTCGAATTCC
102124908 ATTTCACTCGA
1 ATTTCACTCGA
102124919 TTCGATCTGA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.38
Consensus pattern (16 bp):
ATTTCACTCGAATTCC
Found at i:102127847 original size:14 final size:14
Alignment explanation
Indices: 102127825--102127879 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
102127815 AACATAATAG
*
102127825 ATTAATAAATATTT
1 ATTATTAAATATTT
102127839 ATTATTAAATATTT
1 ATTATTAAATATTT
*
102127853 ATAAATTGCAATATATTT
1 AT-TATT--AA-ATATTT
102127871 ATTATTAAA
1 ATTATTAAA
102127880 ATAGTAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
14 16 0.47
15 5 0.15
17 5 0.15
18 8 0.24
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTATTAAATATTT
Found at i:102138907 original size:22 final size:22
Alignment explanation
Indices: 102138882--102138933 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
102138872 TTAATCTTAA
102138882 TTATTTTGATTATTAATTT-ATT
1 TTATTTTGA-TATTAATTTAATT
* *
102138904 TTATGTTTTATCTTAATTTAATT
1 TTAT-TTTGATATTAATTTAATT
*
102138927 ATATTTT
1 TTATTTT
102138934 ATAATTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 15 0.60
23 10 0.40
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (22 bp):
TTATTTTGATATTAATTTAATT
Found at i:102141660 original size:20 final size:21
Alignment explanation
Indices: 102141621--102141660 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
102141611 AATTTTTTTT
**
102141621 TAAAAAGATAAATTTTAAATA
1 TAAAAAGATAAATTACAAATA
102141642 TAAAAA-ATAAATTACAAAT
1 TAAAAAGATAAATTACAAAT
102141661 TATGTCAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (21 bp):
TAAAAAGATAAATTACAAATA
Found at i:102144789 original size:19 final size:19
Alignment explanation
Indices: 102144765--102144808 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
102144755 CAATAATATG
*
102144765 TCACATATATTTATTAATT
1 TCACATATATCTATTAATT
102144784 TCACATATATCTATTAATT
1 TCACATATATCTATTAATT
*
102144803 TGACAT
1 TCACAT
102144809 GATAATCTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (19 bp):
TCACATATATCTATTAATT
Found at i:102146620 original size:12 final size:12
Alignment explanation
Indices: 102146603--102146627 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102146593 GGTGTTCATT
102146603 CGGTTAACCGAC
1 CGGTTAACCGAC
102146615 CGGTTAACCGAC
1 CGGTTAACCGAC
102146627 C
1 C
102146628 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:102146801 original size:9 final size:9
Alignment explanation
Indices: 102146787--102146856 Score: 113
Period size: 9 Copynumber: 7.8 Consensus size: 9
102146777 TTTGGTTAAA
102146787 AATTACCCG
1 AATTACCCG
102146796 AATTACCCG
1 AATTACCCG
102146805 AATTACCCG
1 AATTACCCG
102146814 AATTACCCG
1 AATTACCCG
*
102146823 AATTAACCG
1 AATTACCCG
*
102146832 AATTAACCG
1 AATTACCCG
*
102146841 AATTAACCG
1 AATTACCCG
102146850 AATTACC
1 AATTACC
102146857 GAAAAATACC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:102157560 original size:39 final size:40
Alignment explanation
Indices: 102157456--102157671 Score: 307
Period size: 39 Copynumber: 5.5 Consensus size: 40
102157446 TGGATGATAA
* * *
102157456 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
102157496 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
102157536 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
102157575 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
102157614 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
102157654 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
102157672 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
39 93 0.57
40 70 0.43
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:102157588 original size:79 final size:79
Alignment explanation
Indices: 102157456--102157671 Score: 305
Period size: 79 Copynumber: 2.7 Consensus size: 79
102157446 TGGATGATAA
* * *
102157456 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCA-TT
102157520 GTGCGAGTTACTATAT
64 GTGCGAGTTACTATAT
*
102157536 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGT
102157600 GCGAGTTACTATAT
66 GCGAGTTACTATAT
* * * *
102157614 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
102157672 TACTTGGCTT
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
78 45 0.36
79 69 0.55
80 11 0.09
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGT
GCGAGTTACTATAT
Found at i:102165660 original size:40 final size:40
Alignment explanation
Indices: 102165605--102165822 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
102165595 TGGATGATAA
* * *
102165605 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
102165645 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
102165685 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
102165725 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
102165765 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
102165805 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
102165823 TACTTGGCTT
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 16 0.10
40 150 0.90
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:102172837 original size:8 final size:8
Alignment explanation
Indices: 102172798--102172828 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
102172788 ATTTAAGTAA
102172798 ATATTATT
1 ATATTATT
102172806 ATATTATT
1 ATATTATT
102172814 ATATTATT
1 ATATTATT
102172822 ATATTAT
1 ATATTAT
102172829 ATTAGTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
ATATTATT
Found at i:102178513 original size:20 final size:20
Alignment explanation
Indices: 102178488--102178535 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
102178478 GTTTTATTTG
102178488 ATTTAGTCTAATTTATTACA
1 ATTTAGTCTAATTTATTACA
102178508 ATTTAGTCTAATTTATTACA
1 ATTTAGTCTAATTTATTACA
102178528 ATTTAGTC
1 ATTTAGTC
102178536 ATTGGTCCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.50
Consensus pattern (20 bp):
ATTTAGTCTAATTTATTACA
Found at i:102180582 original size:34 final size:34
Alignment explanation
Indices: 102180544--102180621 Score: 129
Period size: 34 Copynumber: 2.3 Consensus size: 34
102180534 TGATTGAGTT
102180544 GCTAGAATAAATGCTTATCTTAGTTAATTGAATA
1 GCTAGAATAAATGCTTATCTTAGTTAATTGAATA
* * *
102180578 GCTAGAATAAATGCTTATCTTAGTTAATTTAGTT
1 GCTAGAATAAATGCTTATCTTAGTTAATTGAATA
102180612 GCTAGAATAA
1 GCTAGAATAA
102180622 TTTATTGTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.38
Consensus pattern (34 bp):
GCTAGAATAAATGCTTATCTTAGTTAATTGAATA
Found at i:102182733 original size:15 final size:17
Alignment explanation
Indices: 102182715--102182782 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 17
102182705 AAATCAAGAG
102182715 AAGAAAAAGAGA-TG-A
1 AAGAAAAAGAGATTGAA
*
102182730 AAGAAAAAGAAATTGAA
1 AAGAAAAAGAGATTGAA
*
102182747 AAGGAAAAAGAGAATGAGA
1 AA-GAAAAAGAGATTGA-A
102182766 GAGAGAAAAA-AGATTGA
1 -A-AGAAAAAGAGATTGA
102182783 GATTGAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
15 11 0.26
16 2 0.05
17 3 0.07
18 12 0.28
19 7 0.16
20 7 0.16
21 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.26, T:0.09
Consensus pattern (17 bp):
AAGAAAAAGAGATTGAA
Found at i:102186812 original size:26 final size:27
Alignment explanation
Indices: 102186782--102186835 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
102186772 GTTGTTGTTG
102186782 GCTAGTGTAAGA-CATGTCTGGGACAT
1 GCTAGTGTAAGACCATGTCTGGGACAT
102186808 GCTAGTGTAAGACCATGTCTGGGACAT
1 GCTAGTGTAAGACCATGTCTGGGACAT
102186835 G
1 G
102186836 GCATCGGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (27 bp):
GCTAGTGTAAGACCATGTCTGGGACAT
Found at i:102186909 original size:46 final size:46
Alignment explanation
Indices: 102186811--102187030 Score: 205
Period size: 46 Copynumber: 4.7 Consensus size: 46
102186801 GGGACATGCT
* * * * *
102186811 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAACT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
102186859 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-TGAGAGCC
* * *
102186905 AGTGTAAGACATGTCTGGGACATGCATCTG-CTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* * * *
102186951 AGTGTAAGGCCCTGTCTGGGACATGACATC-GACTTGAGAT-ATGAGCC
1 AGTGTAA-GACATGTCTGGGACATG-CATCGGCCTCGAGATGA-GAGCC
*
102186998 AGTGTAAGACAATGTTTGGGACATGGCATCGGC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
102187031 ACCTTACCTA
Statistics
Matches: 144, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
45 4 0.03
46 62 0.43
47 61 0.42
48 17 0.12
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:102194512 original size:47 final size:46
Alignment explanation
Indices: 102194443--102194705 Score: 207
Period size: 47 Copynumber: 5.6 Consensus size: 46
102194433 GTTGATGGTT
*
102194443 AGTGTAAGACATGTCTGAGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACA-TATGAGAGCC
* * * * *
102194489 AGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCA--CATATGAGAGCC
* * *
102194537 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCAC-ATA-TGAGAGCC
* * * * * * *
102194583 AGTGTAAGACATGTCTGGAACAT-GCATCAGCTATGAAATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCA-CATATGAGAGCC
* * *
102194629 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT--GAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC--CACATATGAGAGCC
102194676 AGTGTAAGACAATGTCTGGGACATGGCATC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATC
102194706 AGCGCCTTAC
Statistics
Matches: 176, Mismatches: 27, Indels: 27
0.77 0.12 0.12
Matches are distributed among these distances:
45 2 0.01
46 66 0.38
47 73 0.41
48 29 0.16
49 5 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCACATATGAGAGCC
Found at i:102194695 original size:140 final size:141
Alignment explanation
Indices: 102194443--102194705 Score: 367
Period size: 140 Copynumber: 1.9 Consensus size: 141
102194433 GTTGATGGTT
* *
102194443 AGTGTAAGACATGTCTGAGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGAGACATGCATCAGCCACATAATGAGAGCCAGTGTAAGACCATGTCTGG
*
102194508 GACATGGCATCGGTATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
66 GACATGGCATCGGTATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
102194572 AGACTTAAGCC
131 AGACTTAAGCC
* * * *
102194583 AGTGTAAGACATGTCTG-GAACATGCATCAGCTATGA-AATGATAGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGAG-ACATGCATCAGCCA-CATAATGAGAGCCAGTGTAAGACCATGTCT
*
102194646 GGGACATGGCATC-G-ACTTGAGA-TATGAGCCAGTGTAAGACAATGTCTGGGACATGGCATC
64 GGGACATGGCATCGGTA-TTGAGACGA-GAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATC
102194706 AGCGCCTTAC
Statistics
Matches: 109, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
138 2 0.02
139 22 0.20
140 79 0.72
141 6 0.06
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGAGACATGCATCAGCCACATAATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGTATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
AGACTTAAGCC
Found at i:102210730 original size:68 final size:68
Alignment explanation
Indices: 102210658--102210864 Score: 247
Period size: 68 Copynumber: 3.0 Consensus size: 68
102210648 ATTTAACATT
* * *
102210658 TTGGCGAACTCTATTGGTTGTCTTAGCCAAACTATGGTCTTACACCTTGTAACCTTATGTTTAAT
1 TTGGCGAACTCTATTGGTTGTCATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAAT
102210723 GTC
66 GTC
* * * *
102210726 TTGGC-AGACTCTATTGGTTGTAATAGCCAAGCTATGGTATTACATCTTGTAACCTCATATTTAA
1 TTGGCGA-ACTCTATTGGTTGTCATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAA
102210790 TGTC
65 TGTC
* *** * * * *
102210794 CTAATGAACTCCATTAGTT-TCCATAGCCAAGCTCTGGTCTTACACCTTGTAACCCCATGTTTAA
1 TTGGCGAACTCTATTGGTTGT-CATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAA
102210858 TGTC
65 TGTC
102210862 TTG
1 TTG
102210865 ACAGACTTTA
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
67 2 0.02
68 112 0.97
69 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (68 bp):
TTGGCGAACTCTATTGGTTGTCATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAAT
GTC
Found at i:102210886 original size:68 final size:68
Alignment explanation
Indices: 102210665--102210906 Score: 238
Period size: 68 Copynumber: 3.6 Consensus size: 68
102210655 ATTTTGGCGA
* * * * * *
102210665 ACTCTATTGGTTGTCTTAGCCAAACTATGGTCTTACACCTTGTAACCTTATGTTTAATGTCTTGG
1 ACTCTATTAGTTGCCATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTGA
102210730 CAG
66 CAG
* ** * * * *
102210733 ACTCTATTGGTTGTAATAGCCAAGCTATGGTATTACATCTTGTAACCTCATATTTAATGTCCT-A
1 ACTCTATTAGTTGCCATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTGA
102210797 -ATG
66 CA-G
* * * *
102210800 AACTCCATTAGTTTCCATAGCCAAGCTCTGGTCTTACACCTTGTAACCCCATGTTTAATGTCTTG
1 -ACTCTATTAGTTGCCATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTG
102210865 ACAG
65 ACAG
* * * * *
102210869 ACTTTA-TATGTCGCCATAGTCGAGCTATGATCTTACAC
1 ACTCTATTA-GTTGCCATAGCCAAGCTATGGTCTTACAC
102210907 ATTAAACCTC
Statistics
Matches: 141, Mismatches: 28, Indels: 10
0.79 0.16 0.06
Matches are distributed among these distances:
66 1 0.01
67 3 0.02
68 134 0.95
69 2 0.01
70 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (68 bp):
ACTCTATTAGTTGCCATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTGA
CAG
Found at i:102212280 original size:188 final size:188
Alignment explanation
Indices: 102211963--102212342 Score: 706
Period size: 188 Copynumber: 2.0 Consensus size: 188
102211953 ATTGAGATCC
102211963 AACTAATCTAAACTCAGCCACTAAAATCTCTGAATTTCCCGGTGGAGTCTGAAAATTCACCAACC
1 AACTAATCTAAACTCAGCCACTAAAATCTCTGAATTTCCCGGTGGAGTCTGAAAATTCACCAACC
102212028 CATACAATTTCACCCAAACTTTCCTTAAATTTCAAGTCAAAGAAAATATTTAAGTGTTACAACTG
66 CATACAATTTCACCCAAACTTTCCTTAAATTTCAAGTCAAAGAAAATATTTAAGTGTTACAACTG
*
102212093 AGCATCCTATATGCTTAGCTTTTTTGTTTTCTTTCCCTTGTAGATCATTACCTTGCGA
131 AGCATCCTATATGCTTAGCTTTTTTGTTTTCTTTCCCTTGTAGATCAGTACCTTGCGA
102212151 AACTAATCTAAACTCAGCCACTAAAATCTCTGAATTTCCCGGTGGAGTCTGAAAATTCACCAACC
1 AACTAATCTAAACTCAGCCACTAAAATCTCTGAATTTCCCGGTGGAGTCTGAAAATTCACCAACC
* * * * *
102212216 CATGCAATTTCATCCAAACTTTCCTTAAATTTTAGGTCAAATAAAATATTTAAGTGTTACAACTG
66 CATACAATTTCACCCAAACTTTCCTTAAATTTCAAGTCAAAGAAAATATTTAAGTGTTACAACTG
102212281 AGCATCCTATATGCTTAGCTTTTTTGTTTTCTTTCCCTTGTAGATCAGTACCTTGCGA
131 AGCATCCTATATGCTTAGCTTTTTTGTTTTCTTTCCCTTGTAGATCAGTACCTTGCGA
102212339 AACT
1 AACT
102212343 CATCAAGTTG
Statistics
Matches: 186, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
188 186 1.00
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (188 bp):
AACTAATCTAAACTCAGCCACTAAAATCTCTGAATTTCCCGGTGGAGTCTGAAAATTCACCAACC
CATACAATTTCACCCAAACTTTCCTTAAATTTCAAGTCAAAGAAAATATTTAAGTGTTACAACTG
AGCATCCTATATGCTTAGCTTTTTTGTTTTCTTTCCCTTGTAGATCAGTACCTTGCGA
Found at i:102215679 original size:21 final size:21
Alignment explanation
Indices: 102215633--102215707 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 21
102215623 TTAATTTATT
*
102215633 AAATT-TTAATTTTTATAGAC
1 AAATTATTAATTTTTATATAC
*
102215653 -ATTTATTAATTTTTATATAC
1 AAATTATTAATTTTTATATAC
102215673 AAATTATTGAATTGTTTA-ATA-
1 AAATTATT-AATT-TTTATATAC
*
102215694 ATATTACTTAATTT
1 AAATTA-TTAATTT
102215708 AATTAGAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
19 3 0.07
20 15 0.33
21 15 0.33
22 9 0.20
23 4 0.09
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (21 bp):
AAATTATTAATTTTTATATAC
Found at i:102221141 original size:16 final size:16
Alignment explanation
Indices: 102221120--102221169 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 16
102221110 ATATTTAATT
102221120 ATATAATAAATTATTA
1 ATATAATAAATTATTA
102221136 ATATAAT---TTATTA
1 ATATAATAAATTATTA
* *
102221149 TTGTAATAAATTATTTA
1 ATATAATAAATTA-TTA
102221166 ATAT
1 ATAT
102221170 TTTGATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 11 0.42
16 10 0.38
17 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:102226152 original size:46 final size:46
Alignment explanation
Indices: 102226102--102226277 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
102226092 TGGTTGAGCA
*
102226102 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
102226148 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
102226193 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
102226241 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102226278 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:102226258 original size:93 final size:93
Alignment explanation
Indices: 102226099--102226270 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
102226089 GGATGGTTGA
* *
102226099 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
102226164 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
102226192 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
102226257 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
102226271 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:102241605 original size:42 final size:42
Alignment explanation
Indices: 102241541--102241627 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
102241531 CTATCTACAC
102241541 TGATCACAAAAGCCTCAAATATCTCTTCACCCAGAAGAAAGT
1 TGATCACAAAAGCCTCAAATATCTCTTCACCCAGAAGAAAGT
*
102241583 TGATCACAAAAGCCTCACATATCTCTTCACCCAGAAGAAAGT
1 TGATCACAAAAGCCTCAAATATCTCTTCACCCAGAAGAAAGT
102241625 TGA
1 TGA
102241628 ATCTTAGGCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.22
Consensus pattern (42 bp):
TGATCACAAAAGCCTCAAATATCTCTTCACCCAGAAGAAAGT
Found at i:102263947 original size:35 final size:35
Alignment explanation
Indices: 102263920--102264086 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
102263910 CATGGCAAAG
102263920 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
102263955 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
*
102263990 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTA-T-T---ATCCATACTGAGC
** * * * *
102264030 TAAGAAATGTAGGTATAGCATT-TCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTAT-CCATACTGAGC
**
102264065 TGAAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
102264087 TCAATGAGGA
Statistics
Matches: 116, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
34 1 0.01
35 83 0.72
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 28 0.24
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
Found at i:102264058 original size:75 final size:74
Alignment explanation
Indices: 102263920--102264090 Score: 208
Period size: 75 Copynumber: 2.4 Consensus size: 74
102263910 CATGGCAAAG
** * *
102263920 TGTGAAATGTAGGTATGGTA-TT---ATCCATACTGAGCTGTGAAATGTAGGTATGGTATTATCC
1 TGTGAAATGTAGGTATGGTATTTCAAATCCATACTGAGCTAAGAAATGTAGGTATAGCATTATCC
*
102263981 ATACTGAGC
66 ATACCGAGC
*
102263990 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATAGCATT-TC
1 TGTGAAATGTAGGTATGGTATT-TCAAATCCATACTGAGCTAAGAAATGTAGGTATAGCATTAT-
*
102264054 CCATACCGAGT
64 CCATACCGAGC
**
102264065 TGAAAAATGTAGGTATGGTATTTCAA
1 TGTGAAATGTAGGTATGGTATTTCAA
102264091 TGAGGAAAAC
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
70 20 0.23
71 1 0.01
72 1 0.01
74 5 0.06
75 59 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (74 bp):
TGTGAAATGTAGGTATGGTATTTCAAATCCATACTGAGCTAAGAAATGTAGGTATAGCATTATCC
ATACCGAGC
Found at i:102270323 original size:47 final size:47
Alignment explanation
Indices: 102270257--102270689 Score: 661
Period size: 47 Copynumber: 9.1 Consensus size: 47
102270247 GAAATGATAG
*
102270257 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
102270304 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
102270351 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
102270400 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
102270447 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
102270496 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
102270543 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
102270590 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * *
102270639 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
102270686 TAAG
1 TAAG
102270690 TCCCGAAGGG
Statistics
Matches: 355, Mismatches: 23, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
47 224 0.63
48 7 0.02
49 124 0.35
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:102270431 original size:96 final size:96
Alignment explanation
Indices: 102270257--102270687 Score: 680
Period size: 96 Copynumber: 4.5 Consensus size: 96
102270247 GAAATGATAG
*
102270257 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
102270320 ATGTGATGAATGTGAAAGTGTATATATGAGA
66 ATGTGATGAATGTGAAAGTGTATATATGAGA
102270351 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
102270416 ATGTGATGAATGTGAAAGTGTATATATGAGA
66 ATGTGATGAATGTGAAAGTGTATATATGAGA
102270447 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
* *
102270512 ATGTGATGAATGTGAAAGTGTATATACGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGAGA
*
102270543 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
102270606 ATGTGATGAATGTGGAAGTGTATATAT-ATG-
66 ATGTGATGAATGTGAAAGTGTATATATGA-GA
* * * * *
102270636 TGACAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATA
1 T-A-AGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
102270688 AGTCCCGAAG
Statistics
Matches: 317, Mismatches: 12, Indels: 14
0.92 0.03 0.04
Matches are distributed among these distances:
93 1 0.00
94 89 0.28
95 5 0.02
96 219 0.69
97 1 0.00
98 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGAGA
Found at i:102270536 original size:143 final size:143
Alignment explanation
Indices: 102270257--102270689 Score: 692
Period size: 143 Copynumber: 3.0 Consensus size: 143
102270247 GAAATGATAG
* *
102270257 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
102270322 GTGATGAATGTGAAAGTG--TATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
102270385 TGTATATATATGTGA
131 TG--TATATATGTGA
* *
102270400 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
102270465 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
102270530 TGTATATACGTGA
131 TGTATATATGTGA
102270543 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * * *
102270608 GTGATGAATGTGGAAGTGTATATATATGTGACAGGG-CTGAGTGGCCAACGTGATGGATGTGAAA
66 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCT-AATGGCCGATGTGATGAATGTGAAA
*
102270672 GTGTATAAATGTGA
130 GTGTATATATGTGA
102270686 TAAG
1 TAAG
102270690 TCCCGAAGGG
Statistics
Matches: 270, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
142 2 0.01
143 223 0.83
145 45 0.17
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGA
Found at i:102270864 original size:37 final size:37
Alignment explanation
Indices: 102270808--102270886 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
102270798 CCGAGCTCTA
* *
102270808 AAGACCCGATGACTACGTGTAGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGT-GGAGATTATGTCCGGGT
*
102270845 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
102270882 AAGAC
1 AAGAC
102270887 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 2 0.05
37 36 0.95
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:102276111 original size:35 final size:35
Alignment explanation
Indices: 102276020--102276114 Score: 172
Period size: 35 Copynumber: 2.7 Consensus size: 35
102276010 CATGGAAAAG
* *
102276020 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
102276055 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
102276090 TGTGAAATGTAGGTATGGTATTATC
1 TGTGAAATGTAGGTATGGTATTATC
102276115 AAATACATAC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 58 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.36
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
Found at i:102276124 original size:40 final size:37
Alignment explanation
Indices: 102276020--102276186 Score: 168
Period size: 35 Copynumber: 4.6 Consensus size: 37
102276010 CATGGAAAAG
*
102276020 TGTGAAATGTAGGTATGGTATCATC--CATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCATCATACTGAGT
*
102276055 TGTGAAATGTAGGTATGGTATTATC--CATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCATCATACTGAGT
102276090 TGTGAAATGTAGGTATGGTATTATCAAATACATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATC--AT-CATACTGAGT
** ** *
102276130 TAAGAAATGTAGGTATGACATT-TC-CCATA-TCGAGT
1 TGTGAAATGTAGGTATGGTATTATCATCATACT-GAGT
**
102276165 TGAAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
102276187 TCAATGAGGA
Statistics
Matches: 114, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 84 0.74
39 2 0.02
40 27 0.24
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.34
Consensus pattern (37 bp):
TGTGAAATGTAGGTATGGTATTATCATCATACTGAGT
Found at i:102276142 original size:75 final size:75
Alignment explanation
Indices: 102276020--102276190 Score: 196
Period size: 75 Copynumber: 2.4 Consensus size: 75
102276010 CATGGAAAAG
* ** **
102276020 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATACATACTGAGTTAAGAAATGTAGGTATGACATT-TC
102276079 CCATA-CTGAGC
65 CCATATC-GAGC
102276090 TGTGAAATGTAGGTATGGTATTATCAAATACATACTGAGTTAAGAAATGTAGGTATGACATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATACATACTGAGTTAAGAAATGTAGGTATGACATTTCC
*
102276155 CATATCGAGT
66 CATATCGAGC
**
102276165 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
102276191 TGAGGAAAAC
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 58 0.67
76 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATACATACTGAGTTAAGAAATGTAGGTATGACATTTCC
CATATCGAGC
Found at i:102277598 original size:27 final size:27
Alignment explanation
Indices: 102277566--102277617 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
102277556 ACACCTATTA
*
102277566 TTTATTTTTA-CTTTTTTTAATATTTAT
1 TTTATTTTTATCTTTATTT-ATATTTAT
102277593 TTTATTTTTATCTTTATTTATATTT
1 TTTATTTTTATCTTTATTTATATTT
102277618 TGAAATTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (27 bp):
TTTATTTTTATCTTTATTTATATTTAT
Found at i:102282373 original size:60 final size:59
Alignment explanation
Indices: 102282307--102282425 Score: 143
Period size: 60 Copynumber: 2.0 Consensus size: 59
102282297 TATGGCCAAG
* *
102282307 GCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTGATATGGGCTAC
1 GCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTGATATAGGCTAC
* * *
102282367 GCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTGATATAGGCTA
1 GCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTGATATAGGCTA
102282426 AGGCCCAGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
59 1 0.02
60 42 0.82
61 8 0.16
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (59 bp):
GCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTGATATAGGCTAC
Found at i:102284521 original size:18 final size:18
Alignment explanation
Indices: 102284498--102284568 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
102284488 GGGACGTGTC
102284498 ATTCATTTTCAAAATGTT
1 ATTCATTTTCAAAATGTT
*
102284516 ATTCATTATCACAAA-GTT
1 ATTCATTTTCA-AAATGTT
* * *
102284534 ATAC-TCTTTCAAAACGCT
1 ATTCAT-TTTCAAAATGTT
*
102284552 ATTAATTTTCAAAATGT
1 ATTCATTTTCAAAATGT
102284569 CACTTATTGC
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
17 4 0.10
18 33 0.80
19 4 0.10
ACGTcount: A:0.37, C:0.15, G:0.06, T:0.42
Consensus pattern (18 bp):
ATTCATTTTCAAAATGTT
Found at i:102285565 original size:23 final size:23
Alignment explanation
Indices: 102285530--102285585 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
102285520 ATATGTAAAT
* *
102285530 AATTATAAAAATTATATTATATTA
1 AATTAT-ACAATTATAATATATTA
102285554 AATTATACAATTATAATATATTA
1 AATTATACAATTATAATATATTA
*
102285577 ATTTA-ACAA
1 AATTATACAA
102285586 AGAATGAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 4 0.14
23 19 0.66
24 6 0.21
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
AATTATACAATTATAATATATTA
Found at i:102296263 original size:10 final size:10
Alignment explanation
Indices: 102296250--102296279 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
102296240 TTATAAAAAG
102296250 TAAATTATAT
1 TAAATTATAT
102296260 TAAATTATAT
1 TAAATTATAT
102296270 TAAATTATAT
1 TAAATTATAT
102296280 AATTATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TAAATTATAT
Found at i:102298315 original size:49 final size:49
Alignment explanation
Indices: 102298243--102298395 Score: 218
Period size: 49 Copynumber: 3.1 Consensus size: 49
102298233 ATTACTTGTA
*
102298243 AAACACAATTATACACTTGTAAATAATCTTGATTAAACTAGATGTATGG
1 AAACACAATTATACACTTGTAAATAATCTTGATTAAACTAGATGTAAGG
* * *
102298292 AAACAAAATTATACACTTGTAAATAATCTTGATTAAACTAAAT-TCAAAGTA
1 AAACACAATTATACACTTGTAAATAATCTTGATTAAACTAGATGT--AAG-G
* *
102298343 AAACACAATTATACATTTGTAAATAATCTTGATTAAACTAGATGTACGG
1 AAACACAATTATACACTTGTAAATAATCTTGATTAAACTAGATGTAAGG
102298392 AAAC
1 AAAC
102298396 CTCATATCAT
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
48 1 0.01
49 45 0.49
50 4 0.04
51 40 0.44
52 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.31
Consensus pattern (49 bp):
AAACACAATTATACACTTGTAAATAATCTTGATTAAACTAGATGTAAGG
Found at i:102300333 original size:27 final size:27
Alignment explanation
Indices: 102300295--102300348 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
102300285 GTCCAAAAAC
102300295 TTAGAATTTGGAAAAATTGCTCTCCAA
1 TTAGAATTTGGAAAAATTGCTCTCCAA
102300322 TTAGAATTTGGAAAAATTGCTCTCCAA
1 TTAGAATTTGGAAAAATTGCTCTCCAA
102300349 AACCTTCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (27 bp):
TTAGAATTTGGAAAAATTGCTCTCCAA
Found at i:102304099 original size:49 final size:48
Alignment explanation
Indices: 102304046--102304176 Score: 167
Period size: 47 Copynumber: 2.7 Consensus size: 48
102304036 ACGAGATGTA
* * *
102304046 TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGAT-AG
1 TCAGTGTAAGACCATGTATGGGACATGGCATCGGCCT-GA-ATGGATGAG
* *
102304095 TCAGTGTAAGACCATGTATGGGACATGGCATC-GACTTAATGGATGAG
1 TCAGTGTAAGACCATGTATGGGACATGGCATCGGCCTGAATGGATGAG
* *
102304142 CCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 TCAGTGTAAGACCATGTATGGGACATGGCATCGGC
102304177 ATTATACCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
46 4 0.06
47 33 0.46
48 4 0.06
49 31 0.43
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (48 bp):
TCAGTGTAAGACCATGTATGGGACATGGCATCGGCCTGAATGGATGAG
Found at i:102306674 original size:21 final size:20
Alignment explanation
Indices: 102306650--102306689 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
102306640 ATGCTCAAGT
102306650 TCCACACGGGCGTGTTGCCCA
1 TCCACACGGGCGTG-TGCCCA
102306671 TCCACACGGGCGTGTGCCC
1 TCCACACGGGCGTGTGCCC
102306690 TGTTTCAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.12, C:0.40, G:0.30, T:0.17
Consensus pattern (20 bp):
TCCACACGGGCGTGTGCCCA
Found at i:102315606 original size:43 final size:43
Alignment explanation
Indices: 102315545--102315672 Score: 138
Period size: 43 Copynumber: 3.0 Consensus size: 43
102315535 TAGGATTTTT
* * *
102315545 GATATGTGTTCTCGTGTAAGACCACATCTGAGACGTTGGCATC
1 GATATGTATTCACGTGTAAGACCACGTCTGAGACGTTGGCATC
*
102315588 GATATGTATTCCCGTGTAAGACC-CTGTCT-AGGACAG-TGGCATC
1 GATATGTATTCACGTGTAAGACCAC-GTCTGA-GAC-GTTGGCATC
**
102315631 GATATGTGATT-ATATGTAAGACCACGTCTGAGACGTTGGCAT
1 GATATGT-ATTCACGTGTAAGACCACGTCTGAGACGTTGGCAT
102315673 TGTATGATAT
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
42 3 0.04
43 63 0.88
44 6 0.08
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
GATATGTATTCACGTGTAAGACCACGTCTGAGACGTTGGCATC
Found at i:102316077 original size:19 final size:20
Alignment explanation
Indices: 102316040--102316077 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
102316030 CCAAGATAAA
*
102316040 GTTTATATATGAAAGTATAT
1 GTTTATATATGAAACTATAT
*
102316060 GTTT-TATATGAACCTATA
1 GTTTATATATGAAACTATA
102316078 AGCTTGAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.45
Consensus pattern (20 bp):
GTTTATATATGAAACTATAT
Found at i:102334350 original size:17 final size:17
Alignment explanation
Indices: 102334325--102334362 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
102334315 ACAGCCTAGC
*
102334325 CACAAGGGCGTGTGTCA
1 CACAAGGGCATGTGTCA
*
102334342 CACATGGGCATGTGTCA
1 CACAAGGGCATGTGTCA
102334359 CACA
1 CACA
102334363 CAAGCAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.18
Consensus pattern (17 bp):
CACAAGGGCATGTGTCA
Found at i:102338249 original size:28 final size:28
Alignment explanation
Indices: 102338206--102338311 Score: 92
Period size: 28 Copynumber: 3.7 Consensus size: 28
102338196 AAAATTAGTG
* *
102338206 TTAAT-TGGGCCTTAGCCCATATCAATA
1 TTAATATGGGCCATAGCCCATATCAGTA
*
102338233 TTAATATGGGCCATAGCCCCT-TACAGTA
1 TTAATATGGGCCATAGCCCATAT-CAGTA
*
102338261 TCAGAGTATATTGGGCC-TAGCCCATATCAGTA
1 T--TA--ATA-TGGGCCATAGCCCATATCAGTA
*
102338293 TTAATATTGGCCATAGCCC
1 TTAATATGGGCCATAGCCC
102338312 TATTACAAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
27 11 0.17
28 27 0.43
30 2 0.03
32 16 0.25
33 7 0.11
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (28 bp):
TTAATATGGGCCATAGCCCATATCAGTA
Found at i:102338288 original size:60 final size:60
Alignment explanation
Indices: 102338209--102338350 Score: 191
Period size: 60 Copynumber: 2.4 Consensus size: 60
102338199 ATTAGTGTTA
*
102338209 ATTGGGCCTTAGCCCATATCAATATTAATATGGGCCATAGCCC-CTTAC-AGTATC-AGAGTAT
1 ATTGGGCC-TAGCCCATATCAATATTAATATGGGCCATAGCCCTATTACAAG--TCGAGA-TAT
* *
102338270 ATTGGGCCTAGCCCATATCAGTATTAATATTGGCCATAGCCCTATTACAAGTCGAGATAT
1 ATTGGGCCTAGCCCATATCAATATTAATATGGGCCATAGCCCTATTACAAGTCGAGATAT
*
102338330 ATTGGGCCTTGCCCATATCAA
1 ATTGGGCCTAGCCCATATCAA
102338351 CACAGTTGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
60 56 0.77
61 15 0.21
62 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (60 bp):
ATTGGGCCTAGCCCATATCAATATTAATATGGGCCATAGCCCTATTACAAGTCGAGATAT
Found at i:102338383 original size:19 final size:20
Alignment explanation
Indices: 102338340--102338385 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
102338330 ATTGGGCCTT
102338340 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAGTTGG
* *
102338360 GCCCATCTCAATACAGTT-G
1 GCCCATATCAACACAGTTGG
102338379 GCCCATA
1 GCCCATA
102338386 ACAAAACAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Found at i:102341314 original size:42 final size:41
Alignment explanation
Indices: 102341212--102341315 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 41
102341202 GGGCGTTACA
* ** *
102341212 GATGATGCACTTACGTGTTAGTATATTTGATTCGATATATT
1 GATGATGCATTTACGTGCCAGTATATTTGATTCGATACATT
* * **
102341253 GATGATGCGTTTACATGCCAGTATATTTTCTTCGATACATCT
1 GATGATGCATTTACGTGCCAGTATATTTGATTCGATACAT-T
*
102341295 GATGATGCATTTAGGTGCCAG
1 GATGATGCATTTACGTGCCAG
102341316 CATGATTGCT
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
41 32 0.63
42 19 0.37
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (41 bp):
GATGATGCATTTACGTGCCAGTATATTTGATTCGATACATT
Found at i:102341328 original size:42 final size:41
Alignment explanation
Indices: 102341234--102341330 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 41
102341224 ACGTGTTAGT
* * * *
102341234 ATATTTGATTCGATATATTGATGATGCGTTTACATGCCAGT
1 ATATTTGCTTCGATACATTGATGATGCATTTACATGCCAGC
* **
102341275 ATATTTTCTTCGATACATCTGATGATGCATTTAGGTGCCAGC
1 ATATTTGCTTCGATACAT-TGATGATGCATTTACATGCCAGC
102341317 ATGA-TTGCTTCGAT
1 AT-ATTTGCTTCGAT
102341331 TTATCTAGTG
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
41 15 0.33
42 30 0.65
43 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (41 bp):
ATATTTGCTTCGATACATTGATGATGCATTTACATGCCAGC
Found at i:102345540 original size:30 final size:30
Alignment explanation
Indices: 102345441--102345556 Score: 88
Period size: 30 Copynumber: 3.7 Consensus size: 30
102345431 AAATATAGGA
*
102345441 TCTTCCCAAGCTCCTAAATGAGATATCAGGTCT
1 TCTTCCCAAGCTCCTAAATGAGATATC-GG--G
** * * *
102345474 TCTAAATCCCAAAATCCTAAATAAGATCTCGAG
1 TCT---TCCCAAGCTCCTAAATGAGATATCGGG
*
102345507 TCTTCCCAAGCTCCTGAATGAGATATCGGG
1 TCTTCCCAAGCTCCTAAATGAGATATCGGG
* * *
102345537 TCTTCTCAAGTTACTAAATG
1 TCTTCCCAAGCTCCTAAATG
102345557 TCCTCATAAG
Statistics
Matches: 64, Mismatches: 16, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
30 37 0.58
33 6 0.09
35 1 0.02
36 20 0.31
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (30 bp):
TCTTCCCAAGCTCCTAAATGAGATATCGGG
Found at i:102350686 original size:43 final size:44
Alignment explanation
Indices: 102350638--102350805 Score: 175
Period size: 43 Copynumber: 3.9 Consensus size: 44
102350628 ATCAAGATGA
* *
102350638 GATTACATGTAAGACCATGTCTAGGACATTGGTATTGTAT-TGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATGT
* * *
102350681 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TATAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATGT
* ** *
102350724 GATTACATGTAAAACCGCGTCTGGGACGTTGGCATTGATATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATATGT
* * * *
102350769 --TAACATGTAAGACCATATTTGGGATA-TGGCATTGTAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
102350806 GAGCTCTACG
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
41 3 0.03
42 9 0.09
43 85 0.83
44 1 0.01
45 4 0.04
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (44 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATGT
Found at i:102353761 original size:32 final size:32
Alignment explanation
Indices: 102353703--102353763 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
102353693 GGTTAGTAGG
** *
102353703 TTAATTAAACTTAATTCTTAAGTTAATCATGA
1 TTAATTAAACAAAATCCTTAAGTTAATCATGA
102353735 TTAATTAAACAAAATCCTTTAA-TTAATCA
1 TTAATTAAACAAAATCC-TTAAGTTAATCA
102353764 AATTAATGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 21 0.84
33 4 0.16
ACGTcount: A:0.44, C:0.11, G:0.03, T:0.41
Consensus pattern (32 bp):
TTAATTAAACAAAATCCTTAAGTTAATCATGA
Found at i:102354583 original size:17 final size:18
Alignment explanation
Indices: 102354555--102354589 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
102354545 TTTCATAGCT
102354555 CCTATAAAAAAAATAAAA
1 CCTATAAAAAAAATAAAA
102354573 CCTAT-AAAAAAATAAAA
1 CCTATAAAAAAAATAAAA
102354590 GAAAAAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.71, C:0.11, G:0.00, T:0.17
Consensus pattern (18 bp):
CCTATAAAAAAAATAAAA
Found at i:102356116 original size:43 final size:43
Alignment explanation
Indices: 102356068--102356230 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 43
102356058 ATCGAGATAT
*
102356068 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * * *
102356111 GATTACGTGTAAGAGCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATTGA
* * * *
102356154 GATTTCATGTAAGACCCTGTCTGGGACAATGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGA
* * * *
102356197 GATAATATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
102356231 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 18, Indels: 7
0.80 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 88 0.89
44 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
Found at i:102356220 original size:86 final size:84
Alignment explanation
Indices: 102356068--102356230 Score: 202
Period size: 86 Copynumber: 1.9 Consensus size: 84
102356058 ATCGAGATAT
* * * * *
102356068 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTACGTGTAAGAGCATGTCT
1 GATTACATGTAAGACCATGTCTGGGACAATGGCATCGTATTGAGAATAC-TGTAAGACCATATCT
102356133 GGGACATTGGCATCGTTAATC
65 GGGACA-TGGCATCGTTAATC
* * *
102356154 GATTTCATGTAAGACCCTGTCTGGGACAATGGCATCGATATGTGATAATA-TGTAAGACCATATC
1 GATTACATGTAAGACCATGTCTGGGACAATGGCATCG-TAT-TGAGAATACTGTAAGACCATATC
*
102356218 TGGGATATGGCAT
64 TGGGACATGGCAT
102356231 TGTACGAGCT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
85 6 0.09
86 51 0.77
87 3 0.05
88 6 0.09
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (84 bp):
GATTACATGTAAGACCATGTCTGGGACAATGGCATCGTATTGAGAATACTGTAAGACCATATCTG
GGACATGGCATCGTTAATC
Found at i:102369285 original size:31 final size:31
Alignment explanation
Indices: 102369250--102369312 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
102369240 TCTCCCAGAG
102369250 TACGCTCCTTGTTCTTTTTTTCTTTTTTCTT
1 TACGCTCCTTGTTCTTTTTTTCTTTTTTCTT
102369281 TACGCTCCTTGTTCTTTTTTTCTTTTTTCTT
1 TACGCTCCTTGTTCTTTTTTTCTTTTTTCTT
102369312 T
1 T
102369313 TTTTTTTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.03, C:0.22, G:0.06, T:0.68
Consensus pattern (31 bp):
TACGCTCCTTGTTCTTTTTTTCTTTTTTCTT
Found at i:102384509 original size:40 final size:40
Alignment explanation
Indices: 102384484--102384624 Score: 219
Period size: 40 Copynumber: 3.5 Consensus size: 40
102384474 CTTGCTCGAA
*
102384484 TGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAT
*
102384524 TGCCTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAT
* * * *
102384564 TGCCTTCGGGACTTAGCCCAGATATAGTAACTAGCGCAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAT
*
102384604 TGCCTTTGGGACTTAGCCCGG
1 TGCCTTCGGGACTTAGCCCGG
102384625 TTATCATCCG
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 92 1.00
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAT
Found at i:102389190 original size:23 final size:23
Alignment explanation
Indices: 102389164--102389211 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
102389154 TTTTAATGAA
102389164 TTTCCCAATTAAAGACTAAATTG
1 TTTCCCAATTAAAGACTAAATTG
102389187 TTTCCCAATTAAAGACTAAATTG
1 TTTCCCAATTAAAGACTAAATTG
102389210 TT
1 TT
102389212 GAAATAGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (23 bp):
TTTCCCAATTAAAGACTAAATTG
Found at i:102389816 original size:21 final size:21
Alignment explanation
Indices: 102389790--102389829 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
102389780 ATTGGGTGGA
102389790 TCAGCTCTTATAAGCTTCTGT
1 TCAGCTCTTATAAGCTTCTGT
*
102389811 TCAGCTCTTATGAGCTTCT
1 TCAGCTCTTATAAGCTTCT
102389830 ATTGGCGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.25, G:0.15, T:0.42
Consensus pattern (21 bp):
TCAGCTCTTATAAGCTTCTGT
Found at i:102399763 original size:15 final size:15
Alignment explanation
Indices: 102399743--102399774 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
102399733 GAAATAAAGT
102399743 GTAGCCCTAGTGAAA
1 GTAGCCCTAGTGAAA
102399758 GTAGCCCTAGTGAAA
1 GTAGCCCTAGTGAAA
102399773 GT
1 GT
102399775 TTTATGGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (15 bp):
GTAGCCCTAGTGAAA
Found at i:102409307 original size:182 final size:181
Alignment explanation
Indices: 102408959--102409326 Score: 639
Period size: 182 Copynumber: 2.0 Consensus size: 181
102408949 TGTGTTCCAC
102408959 TATATCCCTTTTAGGCTACTTGGGTGTGCTGAAGAGCTGATATAGACTTTTCAACTCTGTGGTGT
1 TATATCCCTTTTAGGCTACTTGGGTGTGCTGAAGAGCTGATATAGACTTTTCAACTCTGTGGTGT
* *
102409024 TCATAATAACTGAATATCCAAGTTGTGGTATTCCTAAGTAAAGGTGTGGAAAACATGCTGGACTG
66 TCATAATAACTAAATATCCAAGTTGTGGTATTCCTAAGTAAAGGTGTGGAAAACATGCTGCACTG
*
102409089 AGGCACATTATTGTCTCCATTTTGTTTTTGCTAAACTTATTTCTTTAACAT
131 AGACACATTATTGTCTCCATTTTGTTTTTGCTAAACTTATTTCTTTAACAT
* *
102409140 TATATCCCTTTTAGGCTACTTGGTTGTGCTGAAGAGCTGATATAGACTTTTCAACTTTGTGGTGT
1 TATATCCCTTTTAGGCTACTTGGGTGTGCTGAAGAGCTGATATAGACTTTTCAACTCTGTGGTGT
* *
102409205 TTATAATAATTTAAATATCCAAGTTGTGGTATTCCTAAGTAAAGGTGTGGAAAACATGCTGCACT
66 TCATAATAA-CTAAATATCCAAGTTGTGGTATTCCTAAGTAAAGGTGTGGAAAACATGCTGCACT
*
102409270 GAGACACATTATTGTCTCCATTTTGTATTTT-CTAAACTTGTTTCTTTAACAT
130 GAGACACATTATTGTCTCCATTTTGT-TTTTGCTAAACTTATTTCTTTAACAT
102409322 TATAT
1 TATAT
102409327 GAGATATGTG
Statistics
Matches: 177, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
181 71 0.40
182 102 0.58
183 4 0.02
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (181 bp):
TATATCCCTTTTAGGCTACTTGGGTGTGCTGAAGAGCTGATATAGACTTTTCAACTCTGTGGTGT
TCATAATAACTAAATATCCAAGTTGTGGTATTCCTAAGTAAAGGTGTGGAAAACATGCTGCACTG
AGACACATTATTGTCTCCATTTTGTTTTTGCTAAACTTATTTCTTTAACAT
Found at i:102410540 original size:3 final size:3
Alignment explanation
Indices: 102410532--102410559 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
102410522 TAGCTAGAGA
102410532 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
102410560 CCCTTTTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:102411352 original size:34 final size:34
Alignment explanation
Indices: 102411309--102411375 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
102411299 ATGTTTGGTG
102411309 GAAGTATGTTTGAGTGTATGAGTTAGCAATAAAA
1 GAAGTATGTTTGAGTGTATGAGTTAGCAATAAAA
102411343 GAAGTATGTTTGAGTGTATGAGTTAGCAATAAA
1 GAAGTATGTTTGAGTGTATGAGTTAGCAATAAA
102411376 CTAACATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.33
Consensus pattern (34 bp):
GAAGTATGTTTGAGTGTATGAGTTAGCAATAAAA
Found at i:102412613 original size:24 final size:24
Alignment explanation
Indices: 102412586--102412635 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
102412576 TTTGCCGCCT
*
102412586 CCATGCTTTCCGTGCTTGAATTTC
1 CCATGCTTCCCGTGCTTGAATTTC
102412610 CCATGCTTCCCGTGCTTGAATTTC
1 CCATGCTTCCCGTGCTTGAATTTC
102412634 CC
1 CC
102412636 CCCATGATGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.34, G:0.16, T:0.38
Consensus pattern (24 bp):
CCATGCTTCCCGTGCTTGAATTTC
Found at i:102412655 original size:21 final size:22
Alignment explanation
Indices: 102412622--102412680 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 22
102412612 ATGCTTCCCG
*
102412622 TGCTTGAATTTCCCC-CCATGA
1 TGCTTGAACTTCCCCACCATGA
*
102412643 TGCTTAAACTTCCCACCACCATGA
1 TGCTTGAACTT-CC-CCACCATGA
*
102412667 TGTTTGAACTTCCC
1 TGCTTGAACTTCCC
102412681 ATGATGACCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
21 9 0.29
22 3 0.10
23 4 0.13
24 15 0.48
ACGTcount: A:0.22, C:0.34, G:0.12, T:0.32
Consensus pattern (22 bp):
TGCTTGAACTTCCCCACCATGA
Found at i:102412712 original size:9 final size:9
Alignment explanation
Indices: 102412700--102412742 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
102412690 ATGACCAAAC
102412700 CCATGAGCA
1 CCATGAGCA
*
102412709 CCATAAGCA
1 CCATGAGCA
102412718 CCATGAGCA
1 CCATGAGCA
102412727 CCATGAGCA
1 CCATGAGCA
*
102412736 CCGTGAG
1 CCATGAG
102412743 ACACGTGGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.12
Consensus pattern (9 bp):
CCATGAGCA
Found at i:102413036 original size:33 final size:30
Alignment explanation
Indices: 102412978--102413039 Score: 79
Period size: 33 Copynumber: 2.0 Consensus size: 30
102412968 GGGGTATCCT
*
102412978 CCTTGAGGAGGGTAGCCAGCTGGTGGATAG
1 CCTTGAGGAGGGTAGCCAGCAGGTGGATAG
*
102413008 CCTTGAGGTGGGTAAGCTCCAGCAGGTGGATA
1 CCTTGAGGAGGGT-AG--CCAGCAGGTGGATA
102413040 TCCGCCAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 12 0.44
31 2 0.07
33 13 0.48
ACGTcount: A:0.21, C:0.18, G:0.40, T:0.21
Consensus pattern (30 bp):
CCTTGAGGAGGGTAGCCAGCAGGTGGATAG
Found at i:102415312 original size:16 final size:16
Alignment explanation
Indices: 102415287--102415346 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
102415277 ACTGGGACGG
*
102415287 AATAGGGCTGTAATGA
1 AATAGAGCTGTAATGA
102415303 AATAGAGCTGTAAT-A
1 AATAGAGCTGTAATGA
* *
102415318 GAATAAAGC--TAATGG
1 -AATAGAGCTGTAATGA
*
102415333 AATAGAGTTGTAAT
1 AATAGAGCTGTAAT
102415347 TAGTAATTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
14 10 0.29
15 1 0.03
16 24 0.69
ACGTcount: A:0.43, C:0.05, G:0.25, T:0.27
Consensus pattern (16 bp):
AATAGAGCTGTAATGA
Found at i:102415377 original size:46 final size:44
Alignment explanation
Indices: 102415327--102415416 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 44
102415317 AGAATAAAGC
*
102415327 TAATGGAATAGAGTTGTAATTAGTAATTCAAT-TGTTTGGTTGAATG
1 TAATGGAATAGAATTGTAA-TAGT-ATTC-ATGTGTTTGGTTGAATG
*
102415373 TAATGGAATAGAATTGTAATAGTATTCTTGTGTTTGGTTGAATG
1 TAATGGAATAGAATTGTAATAGTATTCATGTGTTTGGTTGAATG
102415417 GAATAGATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 1 0.02
44 18 0.44
45 4 0.10
46 18 0.44
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.42
Consensus pattern (44 bp):
TAATGGAATAGAATTGTAATAGTATTCATGTGTTTGGTTGAATG
Found at i:102421231 original size:20 final size:21
Alignment explanation
Indices: 102421193--102421231 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
102421183 GGATTATTAC
*
102421193 GATGAATTGTTTTAGAAAAAG
1 GATGAATTGTTTAAGAAAAAG
102421214 GATGAATTG-TTAAGAAAA
1 GATGAATTGTTTAAGAAAA
102421232 TGAGCTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (21 bp):
GATGAATTGTTTAAGAAAAAG
Found at i:102421779 original size:17 final size:18
Alignment explanation
Indices: 102421757--102421793 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
102421747 AAAGGGGAGG
*
102421757 AGAGATTTAA-AAAAAAA
1 AGAGATTGAAGAAAAAAA
102421774 AGAGATTGAAGAAAAAAA
1 AGAGATTGAAGAAAAAAA
102421792 AG
1 AG
102421794 TGTAATCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.68, C:0.00, G:0.19, T:0.14
Consensus pattern (18 bp):
AGAGATTGAAGAAAAAAA
Found at i:102422072 original size:20 final size:19
Alignment explanation
Indices: 102422035--102422073 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
102422025 GCACGGTGGC
* *
102422035 CGGCGATGGTGGCCGACGG
1 CGGCGATGGCGGCAGACGG
102422054 CGGCGGATGGCGGCAGACGG
1 CGGC-GATGGCGGCAGACGG
102422074 AGCCGGAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.13, C:0.26, G:0.54, T:0.08
Consensus pattern (19 bp):
CGGCGATGGCGGCAGACGG
Found at i:102422797 original size:24 final size:24
Alignment explanation
Indices: 102422760--102422822 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
102422750 TCATGTAAAC
*
102422760 ATTATT-TATATTATTTTCA-TGATT
1 ATTATTGTAT-TTATTTTCACT-ACT
* *
102422784 ATTATTGTGTTTATTTTTACTACT
1 ATTATTGTATTTATTTTCACTACT
102422808 ATTATTGTATTTATT
1 ATTATTGTATTTATT
102422823 ATTAGTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 30 0.91
25 3 0.09
ACGTcount: A:0.25, C:0.05, G:0.06, T:0.63
Consensus pattern (24 bp):
ATTATTGTATTTATTTTCACTACT
Found at i:102422837 original size:24 final size:24
Alignment explanation
Indices: 102422781--102422837 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
102422771 TATTTTCATG
* *
102422781 ATTATTATTGTGTTTATTTTTACT
1 ATTATTATTGTATTTATTATTACT
* *
102422805 ACTATTATTGTATTTATTATTAGT
1 ATTATTATTGTATTTATTATTACT
*
102422829 ATTAGTATT
1 ATTATTATT
102422838 ATAATTACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (24 bp):
ATTATTATTGTATTTATTATTACT
Found at i:102423030 original size:2 final size:2
Alignment explanation
Indices: 102423023--102423105 Score: 50
Period size: 2 Copynumber: 43.5 Consensus size: 2
102423013 GTGTATGTAT
* * *
102423023 TA TA TA TA TT TT TA -A TA CTA TA T- TA TG TA TA TA T- TA TA T-
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
102423062 TA TA TA TA TA CA TA TA TA TA TT TA T- TA TA TT TT TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102423103 TA T
1 TA T
102423106 TTTTAATATC
Statistics
Matches: 63, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
1 5 0.08
2 56 0.89
3 2 0.03
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (2 bp):
TA
Found at i:102423046 original size:23 final size:24
Alignment explanation
Indices: 102423020--102423114 Score: 67
Period size: 23 Copynumber: 4.0 Consensus size: 24
102423010 AATGTGTATG
*
102423020 TATTA-TATATATTTT-TAATACTA
1 TATTAGTATATATTTATTAATA-TA
102423043 TATTATGTATATATTATATTATATATA
1 TATTA-GTATATATT-TATTA-ATATA
*
102423070 TACATA-TATATATTTATT-ATAT-
1 TA-TTAGTATATATTTATTAATATA
*
102423092 TTTTATGTATATATTT-TTAATAT
1 TATTA-GTATATATTTATTAATAT
102423115 CACATTATTC
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
21 2 0.03
22 3 0.05
23 22 0.37
25 12 0.20
26 9 0.15
27 6 0.10
28 5 0.08
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (24 bp):
TATTAGTATATATTTATTAATATA
Found at i:102423050 original size:30 final size:34
Alignment explanation
Indices: 102423016--102423104 Score: 91
Period size: 33 Copynumber: 2.8 Consensus size: 34
102423006 TTCTAATGTG
*
102423016 TATGTATTATATATATT-TTTA-ATAC-TATAT-
1 TATGTATTATATATATTATATATATACATATATA
102423046 TATGTA-TATATTATATTATATATATACATATATA
1 TATGTATTATA-TATATTATATATATACATATATA
* * *
102423080 TATTTATTATAT-TTTTATGTATATA
1 TATGTATTATATATATTATATATATA
102423105 TTTTTAATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
29 4 0.08
30 12 0.24
31 3 0.06
32 4 0.08
33 16 0.33
34 6 0.12
35 4 0.08
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.56
Consensus pattern (34 bp):
TATGTATTATATATATTATATATATACATATATA
Found at i:102423110 original size:25 final size:25
Alignment explanation
Indices: 102423025--102423110 Score: 77
Period size: 25 Copynumber: 3.5 Consensus size: 25
102423015 GTATGTATTA
* *
102423025 TATATATTTTTAATACTA-TATTATG
1 TATATATTTTTATTA-TATTTTTATG
* * * **
102423050 TATATA-TTATATTATATATATACA
1 TATATATTTTTATTATATTTTTATG
*
102423074 TATATATATTTATTATATTTTTATG
1 TATATATTTTTATTATATTTTTATG
102423099 TATATATTTTTA
1 TATATATTTTTA
102423111 ATATCACATT
Statistics
Matches: 45, Mismatches: 14, Indels: 4
0.71 0.22 0.06
Matches are distributed among these distances:
23 2 0.04
24 14 0.31
25 29 0.64
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (25 bp):
TATATATTTTTATTATATTTTTATG
Found at i:102424423 original size:22 final size:22
Alignment explanation
Indices: 102424395--102424439 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
102424385 TTTCAAAAAC
102424395 ATTTTTAATTTTAGACATAAGG
1 ATTTTTAATTTTAGACATAAGG
102424417 ATTTTTAATTTTAGACATAAGG
1 ATTTTTAATTTTAGACATAAGG
102424439 A
1 A
102424440 CAGTATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (22 bp):
ATTTTTAATTTTAGACATAAGG
Done.