Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 305 of 362
Found at i:102433678 original size:47 final size:47
Alignment explanation
Indices: 102433609--102433753 Score: 150
Period size: 47 Copynumber: 3.0 Consensus size: 47
102433599 TTACACGGAT
* *
102433609 CACATATCACACTAATGCCATATCCCAGATATGGTCTTATATA-ATAG
1 CACATATCACACCAATGCCATATCCCAGATATGGTCTTATACAGA-AG
* * *
102433656 CACATATCACACCGATGTCATATCCCGGATATGGTCTTATACAGAAG
1 CACATATCACACCAATGCCATATCCCAGATATGGTCTTATACAGAAG
* *
102433703 CACATATCACATTTCTCCGAA-GCCATAGCCCAGCTATGGTCTTATACAGAA
1 CACATATCACA-----CC-AATGCCATATCCCAGATATGGTCTTATACAGAA
102433754 ATCACATTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
47 51 0.63
48 1 0.01
52 28 0.35
53 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (47 bp):
CACATATCACACCAATGCCATATCCCAGATATGGTCTTATACAGAAG
Found at i:102440832 original size:47 final size:46
Alignment explanation
Indices: 102440699--102440908 Score: 204
Period size: 47 Copynumber: 4.3 Consensus size: 46
102440689 ATAGTAAAAC
** * *
102440699 TATGGTCTTGCACAGAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTATACAGAG-CACATATCAC--ACCGATGCCATAGCCCAGA
* * * * * *
102440748 CATGGTCTTACACGGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTATACAGAGCACATATCACACCGATGCCATAGCCCAGA
* *
102440794 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTATACAG-AGCACATATCACACCGATGCCATAGCCCAGA
* *
102440841 TATGGTCTTATACAGAAGCACATATCACATTTCTCCGAAGCCATAGCCCAGC
1 TATGGTCTTATACAG-AGCACATATCACA-----CCGATGCCATAGCCCAGA
102440893 TATGGTCTTATACAGA
1 TATGGTCTTATACAGA
102440909 AATCACATTT
Statistics
Matches: 136, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
46 27 0.20
47 56 0.41
48 10 0.07
49 13 0.10
51 1 0.01
52 29 0.21
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (46 bp):
TATGGTCTTATACAGAGCACATATCACACCGATGCCATAGCCCAGA
Found at i:102445347 original size:45 final size:44
Alignment explanation
Indices: 102445287--102445579 Score: 243
Period size: 49 Copynumber: 6.5 Consensus size: 44
102445277 ACCATCCTAG
*
102445287 CTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAT
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA-CAAATCTTAT
* * * *
102445332 TTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTAT
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAG----A-TACAAATCTTAT
* * * * *
102445381 CTCTCTGAAGTTGCAGTAGAGCAG-GTCGAAGTTACAAGTCTTAT
1 CTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATACAAATCTTAT
* * *
102445425 CTCCTTGAAGTTGCAGTAGAGCAGACTGAAAATAGCAAATCTTAT
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA-CAAATCTTAT
* * *
102445470 TTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAATTACAGATCTTAT
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAG----A-TACAAATCTTAT
* * * * *
102445519 CTCTCTGAAGTTGCAGTAGAGCAGA-TCAA-A-ACAGATCTTGT
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACAAATCTTAT
*
102445560 CTCCCTGAAGTTGTAGTGGA
1 CTCCCTGAAGTTGCAGTGGA
102445580 ACAAATCGAA
Statistics
Matches: 202, Mismatches: 33, Indels: 30
0.76 0.12 0.11
Matches are distributed among these distances:
41 27 0.13
43 1 0.00
44 37 0.18
45 63 0.31
48 4 0.02
49 66 0.33
50 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (44 bp):
CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACAAATCTTAT
Found at i:102445462 original size:138 final size:138
Alignment explanation
Indices: 102445294--102445542 Score: 471
Period size: 138 Copynumber: 1.8 Consensus size: 138
102445284 TAGCTCCCTA
* *
102445294 AAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATT
1 AAGTTGCAGTAGAGCAGACTGAAAATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATT
102445359 GAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTA
66 GAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTA
102445424 TCTCCTTG
131 TCTCCTTG
*
102445432 AAGTTGCAGTAGAGCAGACTGAAAATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATT
1 AAGTTGCAGTAGAGCAGACTGAAAATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATT
102445497 GAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
66 GAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
102445543 ATCAAAACAG
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
138 108 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (138 bp):
AAGTTGCAGTAGAGCAGACTGAAAATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATT
GAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTA
TCTCCTTG
Found at i:102445484 original size:89 final size:90
Alignment explanation
Indices: 102445287--102445572 Score: 232
Period size: 94 Copynumber: 3.1 Consensus size: 90
102445277 ACCATCCTAG
* * * * * *
102445287 CTCCCTAAAGTTGCAGTGGAGCAGA-CTGAAGA-TAGCAAATCTTATTTCCCTGAAGTTGCAGTG
1 CTCCCTGAAGTTGCAGTAGAGCAGATC-GAAGATTA-CAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
102445350 GAACAGATTGAAGCTAAATTA-CAGATCTTAT
64 GAGCAGACTG-A---AAA-TAGCAAATCTTAT
* *
102445381 CTCTCTGAAGTTGCAGTAGAGCAGGTCGAAG-TTACA-AGTCTTATCTC-CTTGAAGTTGCAGTA
1 CTCCCTGAAGTTGCAGTAGAGCAGATCGAAGATTACAGA-TCTTATCTCTC-TGAAGTTGCAGTA
102445443 GAGCAGACTGAAAATAGCAAATCTTAT
64 GAGCAGACTGAAAATAGCAAATCTTAT
* * *
102445470 TTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAG
1 CTCCCTGAAGTTGCAGTAGAGCAGATCGAAG----ATTACAGATCTTATCTCTCTGAAGTTGCAG
* * *
102445535 TAGAGCAGA-T-CAAA-A-CAGATCTTGT
62 TAGAGCAGACTGAAAATAGCAAATCTTAT
102445560 CTCCCTGAAGTTG
1 CTCCCTGAAGTTG
102445573 TAGTGGAACA
Statistics
Matches: 162, Mismatches: 18, Indels: 28
0.78 0.09 0.13
Matches are distributed among these distances:
88 2 0.01
89 38 0.23
90 20 0.12
91 1 0.01
92 6 0.04
93 31 0.19
94 61 0.38
95 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (90 bp):
CTCCCTGAAGTTGCAGTAGAGCAGATCGAAGATTACAGATCTTATCTCTCTGAAGTTGCAGTAGA
GCAGACTGAAAATAGCAAATCTTAT
Found at i:102445568 original size:41 final size:41
Alignment explanation
Indices: 102445508--102445630 Score: 113
Period size: 41 Copynumber: 2.9 Consensus size: 41
102445498 AAGCTAAATT
* *
102445508 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC-AAA
1 ACAGATCTTGTCTCCCTGAAGTTGCAGT-GAGCAGATCGAAA
* * *
102445549 ACAGATCTTGTCTCCCTGAAGTTGTAGTGGAACAAATCGAAA
1 ACAGATCTTGTCTCCCTGAAGTTGCAGT-GAGCAGATCGAAA
* * *
102445591 ACGGTAAATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGAT
1 AC---AGATCTTGTCTCCCTGAAGTTGCAGTG-AGCAGAT
102445631 TCAAGCCACC
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
41 32 0.49
42 5 0.08
44 1 0.02
45 27 0.42
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (41 bp):
ACAGATCTTGTCTCCCTGAAGTTGCAGTGAGCAGATCGAAA
Found at i:102445700 original size:223 final size:224
Alignment explanation
Indices: 102445450--102445947 Score: 811
Period size: 223 Copynumber: 2.2 Consensus size: 224
102445440 GTAGAGCAGA
*
102445450 CTGAAAATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAATTACAGATC
1 CTGAAAATAGCAAATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAATTACAGATC
**
102445515 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTGTCTCCCTGAAGTTGTAGTGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTGTCTCCCTGAAGTTACAGTGGA
102445580 ACAAATCGAAAACGGTAAATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAA-C
131 ACAAATCGAAAACGGTAAATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGC
* *
102445644 CTTAATCCCCAAAGCAGTAGGGTAATAGG
196 CTTAACCCCCAAAGCAATAGGGTAATAGG
* *
102445673 TTGAAAATAGCAAATTTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAATTACAGATC
1 CTGAAAATAGCAAATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAATTACAGATC
102445738 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTGTCTCCCTGAAGTTACAGTGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTGTCTCCCTGAAGTTACAGTGGA
* * *
102445803 ACAGATCGAAGACGGTAAATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGT
131 ACAAATCGAAAACGGTAAATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGC
*
102445868 CTTAACCCCCTAAGCAATAGGGTAATAGG
196 CTTAACCCCCAAAGCAATAGGGTAATAGG
* * * * * * *
102445897 CCGAAAATCA-CTAGTCTTATCTCCCTGAAATTACAGTGGAGCAGACTGAAG
1 CTGAAAAT-AGCAAATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAG
102445948 ACAACGGATC
Statistics
Matches: 253, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
223 186 0.74
224 66 0.26
225 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (224 bp):
CTGAAAATAGCAAATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAATTACAGATC
TTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTGTCTCCCTGAAGTTACAGTGGA
ACAAATCGAAAACGGTAAATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGC
CTTAACCCCCAAAGCAATAGGGTAATAGG
Found at i:102445791 original size:41 final size:41
Alignment explanation
Indices: 102445731--102445853 Score: 113
Period size: 41 Copynumber: 2.9 Consensus size: 41
102445721 AAGCTAAATT
* *
102445731 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC-AAA
1 ACAGATCTTGTCTCCCTGAAGTTGCAGT-GAGCAGATCGAAA
* * *
102445772 ACAGATCTTGTCTCCCTGAAGTTACAGTGGAACAGATCGAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGT-GAGCAGATCGAAA
* * *
102445814 ACGGTAAATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGAT
1 AC---AGATCTTGTCTCCCTGAAGTTGCAGTG-AGCAGAT
102445854 TCAAGCCACC
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 33 0.50
42 4 0.06
44 1 0.02
45 28 0.42
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (41 bp):
ACAGATCTTGTCTCCCTGAAGTTGCAGTGAGCAGATCGAAA
Found at i:102446986 original size:12 final size:12
Alignment explanation
Indices: 102446969--102446998 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
102446959 TTAGCTCTTA
102446969 ACCCGCGACCCG
1 ACCCGCGACCCG
102446981 ACCCGCGACCCG
1 ACCCGCGACCCG
102446993 ACCCGC
1 ACCCGC
102446999 TCCAACTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.60, G:0.23, T:0.00
Consensus pattern (12 bp):
ACCCGCGACCCG
Found at i:102447748 original size:2 final size:2
Alignment explanation
Indices: 102447737--102447827 Score: 59
Period size: 2 Copynumber: 48.0 Consensus size: 2
102447727 TCTAATGTGC
* * *
102447737 AT AT AT -T AT AT AT AT TT TT A- AT ACT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
* * *
102447777 -T AT AT -T AT AT AT AT AC AT AT AT AT AT AT TT AT -T AT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
102447816 TT AT GT AT AT AT
1 AT AT AT AT AT AT
102447828 TTTTAATATC
Statistics
Matches: 70, Mismatches: 12, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
1 6 0.09
2 62 0.89
3 2 0.03
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (2 bp):
AT
Found at i:102447764 original size:23 final size:23
Alignment explanation
Indices: 102447737--102447836 Score: 78
Period size: 25 Copynumber: 4.1 Consensus size: 23
102447727 TCTAATGTGC
102447737 ATATATTA-TATATATTTTTAAT
1 ATATATTAGTATATATTTTTAAT
102447759 ACTATATTATGTATATATTATATTATAT
1 A-TATATTA-GTATATATT-T-TTA-AT
* * *
102447787 ATATACATA-TATATATATTTATT
1 ATATA-TTAGTATATATTTTTAAT
*
102447810 ATATTTTTATGTATATATTTTTAAT
1 ATA-TATTA-GTATATATTTTTAAT
102447835 AT
1 AT
102447837 CACATTATTC
Statistics
Matches: 61, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
22 1 0.02
23 13 0.21
24 4 0.07
25 23 0.38
26 8 0.13
27 7 0.11
28 5 0.08
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
ATATATTAGTATATATTTTTAAT
Found at i:102447804 original size:39 final size:38
Alignment explanation
Indices: 102447738--102447827 Score: 94
Period size: 39 Copynumber: 2.3 Consensus size: 38
102447728 CTAATGTGCA
***
102447738 TATATTATATATATTTTTAATACTATA-TTATGTATATAT
1 TATATTATATATATACATAATACTATATTTAT-TATAT-T
102447777 TATATTATATATATACATATATA-TATATTTATTATATT
1 TATATTATATATATACATA-ATACTATATTTATTATATT
*
102447815 TTTATGTATATAT
1 TATAT-TATATAT
102447828 TTTTAATATC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
38 5 0.11
39 32 0.73
40 7 0.16
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (38 bp):
TATATTATATATATACATAATACTATATTTATTATATT
Found at i:102447844 original size:25 final size:26
Alignment explanation
Indices: 102447745--102447844 Score: 70
Period size: 23 Copynumber: 4.0 Consensus size: 26
102447735 GCATATATTA
*
102447745 TATATATTT-TTAATA-CTATATTATG
1 TATATATTTATTAATATC-ACATTATG
* *
102447770 TATATATTATATTATATATATACA-TATA
1 TATATATT-TATTA-ATAT-CACATTATG
**
102447798 TATATATTTATT-ATAT--TTTTATG
1 TATATATTTATTAATATCACATTATG
102447821 TATATATTT-TTAATATCACATTAT
1 TATATATTTATTAATATCACATTAT
102447845 TCATATGTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
22 2 0.03
23 16 0.28
25 16 0.28
26 1 0.02
27 7 0.12
28 14 0.24
29 2 0.03
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (26 bp):
TATATATTTATTAATATCACATTATG
Found at i:102449072 original size:26 final size:26
Alignment explanation
Indices: 102449028--102449121 Score: 134
Period size: 26 Copynumber: 3.6 Consensus size: 26
102449018 ACACGTCAAG
* * *
102449028 AAATGGAAGCTTTTGTGGTGTGTCTG
1 AAATGGAAACCTTTGTGGTGTGTCTA
* * *
102449054 GAATGGAAACCTTTATGGTGTTTCTA
1 AAATGGAAACCTTTGTGGTGTGTCTA
102449080 AAATGGAAACCTTTGTGGTGTGTCTA
1 AAATGGAAACCTTTGTGGTGTGTCTA
102449106 AAATGGAAACCTTTGT
1 AAATGGAAACCTTTGT
102449122 AGCATAATAA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 59 1.00
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.36
Consensus pattern (26 bp):
AAATGGAAACCTTTGTGGTGTGTCTA
Found at i:102453165 original size:131 final size:131
Alignment explanation
Indices: 102453026--102453847 Score: 821
Period size: 131 Copynumber: 6.3 Consensus size: 131
102453016 TTAAAACTAT
* * * *
102453026 AACCTAAGTTCATTCAATCTAATATCATGAACAATCTTATCTGAGTTAGTTTATTTAATATCGCT
1 AACCTAAGTTCATTCAATTTAATATCATGAACAATCTTATCTGAGTTAGCTGATTTAATATCACT
* * * * * *
102453091 ACTCTAAATAGCTCGTTGATTTAATATCGTATCTAATATCGTTAAGGTTCGCTTATTTAAGATCA
66 ACTCTAAACAGCTCGTTGATTTAAGATCGCATCTGATATCGTTAAGGTTCGCTAATTTAAGATCG
102453156 C
131 C
*** * * * * * *
102453157 AGTATAAGTTCATTCGATTTAATATCATGAACAACCTTATTTGA-TTCTGCTGATTTAATCTCGC
1 AACCTAAGTTCATTCAATTTAATATCATGAACAATCTTATCTGAGTT-AGCTGATTTAATATCAC
* * * ** * *
102453221 TACTCTAAACAACTTGTTGATTTAAGATTGCAGATGATATTGTTAAGGTTCGCTAATTTAATATC
65 TACTCTAAACAGCTCGTTGATTTAAGATCGCATCTGATATCGTTAAGGTTCGCTAATTTAAGATC
102453286 GC
130 GC
* ** * * *
102453288 AACCTAAGTTCATTCGATTTAATATCACAAACAATCTTATCTAAGTTAGTTGATTTAATATTACT
1 AACCTAAGTTCATTCAATTTAATATCATGAACAATCTTATCTGAGTTAGCTGATTTAATATCACT
* ** * * * *
102453353 ACTTTAAACATTTCGCTGATTTAATATCGCAGT-TGATATCGTTAAGGTTTGTTAATTTAAGATC
66 ACTCTAAACAGCTCGTTGATTTAAGATCGCA-TCTGATATCGTTAAGGTTCGCTAATTTAAGATC
102453417 GC
130 GC
** * * **
102453419 AACAGAAGTTCATTCGATTTAATATCATGAACAATCTTATTTGCA-TTAGCTGATTTAATATTGC
1 AACCTAAGTTCATTCAATTTAATATCATGAACAATCTTATCTG-AGTTAGCTGATTTAATATCAC
* * * *
102453483 TACTCTAAACAGGTCATTGATTTAAGATTGCAACTGATATCG-TAAGG-TCTGCTAATTTAAGAT
65 TACTCTAAACAGCTCGTTGATTTAAGATCGCATCTGATATCGTTAAGGTTC-GCTAATTTAAGAT
*
102453546 TGC
129 CGC
* * * * * *
102453549 AATCTAAGTTCATTCAATTTAATATTATGAACAATCATATCTAAGTCAGCTGGTTTAATATCACT
1 AACCTAAGTTCATTCAATTTAATATCATGAACAATCTTATCTGAGTTAGCTGATTTAATATCACT
* * *** * * * *
102453614 ACTCTAAACAACTTGCCAATTTAAGATCGCAACTGATATCGTTAAGGTTCACTAATTTAAAATTG
66 ACTCTAAACAGCTCGTTGATTTAAGATCGCATCTGATATCGTTAAGGTTCGCTAATTTAAGATCG
102453679 C
131 C
* * * * *
102453680 AACCTAAGTTTATTAAATTTAATATTATGAA-AAGTTTTATCTGACTTAGCTGATTTAATATCAC
1 AACCTAAGTTCATTCAATTTAATATCATGAACAA-TCTTATCTGAGTTAGCTGATTTAATATCAC
* * * * * * *
102453744 TACTATAAATAGCTCGTTGATTTAATATCCCAGT-TGATACCGTTAAGGTTCACTATTTTAAGAT
65 TACTCTAAACAGCTCGTTGATTTAAGATCGCA-TCTGATATCGTTAAGGTTCGCTAATTTAAGAT
*
102453808 TGC
129 CGC
* *
102453811 AACCTAATTTCATTCCATTTAATATCATGAACAATCT
1 AACCTAAGTTCATTCAATTTAATATCATGAACAATCT
102453848 CATTTTTGCT
Statistics
Matches: 561, Mismatches: 118, Indels: 24
0.80 0.17 0.03
Matches are distributed among these distances:
129 2 0.00
130 107 0.19
131 445 0.79
132 7 0.01
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (131 bp):
AACCTAAGTTCATTCAATTTAATATCATGAACAATCTTATCTGAGTTAGCTGATTTAATATCACT
ACTCTAAACAGCTCGTTGATTTAAGATCGCATCTGATATCGTTAAGGTTCGCTAATTTAAGATCG
C
Found at i:102453375 original size:262 final size:261
Alignment explanation
Indices: 102452976--102453847 Score: 941
Period size: 262 Copynumber: 3.3 Consensus size: 261
102452966 TAAGGTTCGC
* * * * * * * * **
102452976 TGATTTAATATTGTAGTTGATATCATTAAGGTTCGTTGATTTAAAACTATAACCTAAGTTCATTC
1 TGATTTAAGATTGCAGATGATATCGTTAAGGTTCGCTAATTTAAGATTGCAACCTAAGTTCATTC
* * * * *
102453041 AATCTAATATCATGAACAATCTTATCTGAGTTAGTTTATTTAATATCGCTACTCTAAATAGC-TC
66 AATTTAATATCATGAACAATCTTATCTAAGTTAGTTGATTTAATATCACTACTCTAAACA-CTTC
* * * * **
102453105 GTTGATTTAATATCGTATCTAATATCGTTAAGGTTCGCTTATTTAAGATCACAGTATAAGTTCAT
130 GCTGATTTAATATCGCATCTGATATCGTTAAGGTTCGCTTATTTAAGATCGCAACATAAGTTCAT
* * * *
102453170 TCGATTTAATATCATGAACAACCTTATTTGATTCTGCTGATTTAATCTCGCTACTCTAAACAACT
195 TCGATTTAATATCATGAACAATCTTATTTGATT-AGCTGATTTAATATCGCTACTCTAAACAGCT
*
102453235 TGT
259 CGT
* * *
102453238 TGATTTAAGATTGCAGATGATATTGTTAAGGTTCGCTAATTTAATATCGCAACCTAAGTTCATTC
1 TGATTTAAGATTGCAGATGATATCGTTAAGGTTCGCTAATTTAAGATTGCAACCTAAGTTCATTC
* ** * * *
102453303 GATTTAATATCACAAACAATCTTATCTAAGTTAGTTGATTTAATATTACTACTTTAAACATTTCG
66 AATTTAATATCATGAACAATCTTATCTAAGTTAGTTGATTTAATATCACTACTCTAAACACTTCG
* *
102453368 CTGATTTAATATCGCAGT-TGATATCGTTAAGGTTTG-TTAATTTAAGATCGCAACAGAAGTTCA
131 CTGATTTAATATCGCA-TCTGATATCGTTAAGGTTCGCTT-ATTTAAGATCGCAACATAAGTTCA
* *
102453431 TTCGATTTAATATCATGAACAATCTTATTTGCATTAGCTGATTTAATATTGCTACTCTAAACAGG
194 TTCGATTTAATATCATGAACAATCTTATTTG-ATTAGCTGATTTAATATCGCTACTCTAAACAGC
*
102453496 TCAT
258 TCGT
*
102453500 TGATTTAAGATTGCA-ACTGATATCG-TAAGG-TCTGCTAATTTAAGATTGCAATCTAAGTTCAT
1 TGATTTAAGATTGCAGA-TGATATCGTTAAGGTTC-GCTAATTTAAGATTGCAACCTAAGTTCAT
* * * * *
102453562 TCAATTTAATATTATGAACAATCATATCTAAGTCAGCTGGTTTAATATCACTACTCTAAACAACT
64 TCAATTTAATATCATGAACAATCTTATCTAAGTTAGTTGATTTAATATCACTACTCTAAAC-ACT
** * * * * * * * *
102453627 T-GCCAATTTAAGATCGCAACTGATATCGTTAAGGTTCACTAATTTAAAATTGCAACCTAAGTTT
128 TCGCTGATTTAATATCGCATCTGATATCGTTAAGGTTCGCTTATTTAAGATCGCAACATAAGTTC
** * * * * * *
102453691 ATTAAATTTAATATTATGAA-AAGTTTTATCTGACTTAGCTGATTTAATATCACTACTATAAATA
193 ATTCGATTTAATATCATGAACAA-TCTTATTTGA-TTAGCTGATTTAATATCGCTACTCTAAACA
102453755 GCTCGT
256 GCTCGT
* ** * * * * *
102453761 TGATTTAATATCCCAGTTGATACCGTTAAGGTTCACTATTTTAAGATTGCAACCTAATTTCATTC
1 TGATTTAAGATTGCAGATGATATCGTTAAGGTTCGCTAATTTAAGATTGCAACCTAAGTTCATTC
*
102453826 CATTTAATATCATGAACAATCT
66 AATTTAATATCATGAACAATCT
102453848 CATTTTTGCT
Statistics
Matches: 507, Mismatches: 89, Indels: 28
0.81 0.14 0.04
Matches are distributed among these distances:
260 5 0.01
261 206 0.41
262 290 0.57
263 6 0.01
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.39
Consensus pattern (261 bp):
TGATTTAAGATTGCAGATGATATCGTTAAGGTTCGCTAATTTAAGATTGCAACCTAAGTTCATTC
AATTTAATATCATGAACAATCTTATCTAAGTTAGTTGATTTAATATCACTACTCTAAACACTTCG
CTGATTTAATATCGCATCTGATATCGTTAAGGTTCGCTTATTTAAGATCGCAACATAAGTTCATT
CGATTTAATATCATGAACAATCTTATTTGATTAGCTGATTTAATATCGCTACTCTAAACAGCTCG
T
Found at i:102453736 original size:392 final size:393
Alignment explanation
Indices: 102452970--102453852 Score: 1022
Period size: 392 Copynumber: 2.2 Consensus size: 393
102452960 TATCGTTAAG
* * * * * **
102452970 GTTCGCTGATTTAATATTGTAGTTGATATCATTAAGGTTCGTTGATTTAA-AACTATAACCTAAG
1 GTTCGCTGATTTAATATCGCAGTTGATATCGTTAAGGTTCGTTAATTTAAGATC-GCAACCTAAG
* * * *
102453034 TTCATTCAATCTAATATCATGAACAATCTTATCTGAGTTAGTTTATTTAATATCGCTACTCTAAA
65 TTCATTCAATTTAATATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCTAAA
* * * * * * *
102453099 TAGCTCGTTGATTTAATATCGTATCTAATATCGTTAAGGTTCGCTTATTTAAGATCACAGTATAA
130 CAGCTCATTGATTTAAGATCGCAACTAATATCGTTAAGGTTCGCTAATTTAAGATCACAATATAA
* * * * * * * *
102453164 GTTCATTCGATTTAATATCATGAACAACCTTATTTGATTCTGCTGATTTAATCTCGCTACTCTAA
195 GTTCATTCAATTTAATATCATGAACAACCATATCTAAGTCAGCTGATTTAATATCACTACTCTAA
*** * * * *
102453229 ACAACTTGTTGATTTAAGATTGCAGATGATATTGTTAAGGTTCGCTAATTTAATATCGCAACCTA
260 ACAACTTGCCAATTTAAGATCGCAGATGATATCGTTAAGGTTCACTAATTTAAAATCGCAACCTA
** * * * *
102453294 AGTTCATTCGATTTAATATCACAAACAATCTTATCTAAGTTAGTTGATTTAATATTACTACTTTA
325 AGTTCATTAAATTTAATATCACAAACAATCTTATCTAACTTAGCTGATTTAATATCACTACTATA
102453359 AACA
390 AACA
* * **
102453363 TTTCGCTGATTTAATATCGCAGTTGATATCGTTAAGGTTTGTTAATTTAAGATCGCAACAGAAGT
1 GTTCGCTGATTTAATATCGCAGTTGATATCGTTAAGGTTCGTTAATTTAAGATCGCAACCTAAGT
* *
102453428 TCATTCGATTTAATATCATGAACAATCTTATTTGCA-TTAGCTGATTTAATATTGCTACTCTAAA
66 TCATTCAATTTAATATCATGAACAATCTTATTTG-AGTTAGCTGATTTAATATCGCTACTCTAAA
* * * ** *
102453492 CAGGTCATTGATTTAAGATTGCAACTGATATCG-TAAGG-TCTGCTAATTTAAGATTGCAATCTA
130 CAGCTCATTGATTTAAGATCGCAACTAATATCGTTAAGGTTC-GCTAATTTAAGATCACAATATA
* * *
102453555 AGTTCATTCAATTTAATATTATGAACAATCATATCTAAGTCAGCTGGTTTAATATCACTACTCTA
194 AGTTCATTCAATTTAATATCATGAACAACCATATCTAAGTCAGCTGATTTAATATCACTACTCTA
*
102453620 AACAACTTGCCAATTTAAGATCGCA-ACTGATATCGTTAAGGTTCACTAATTTAAAATTGCAACC
259 AACAACTTGCCAATTTAAGATCGCAGA-TGATATCGTTAAGGTTCACTAATTTAAAATCGCAACC
* * * * * *
102453684 TAAGTTTATTAAATTTAATATTATGAAA-AGTTTTATCTGACTTAGCTGATTTAATATCACTACT
323 TAAGTTCATTAAATTTAATATCA-CAAACAATCTTATCTAACTTAGCTGATTTAATATCACTACT
*
102453748 ATAAATA
387 ATAAACA
* * * * ** * * *
102453755 GCTCGTTGATTTAATATCCCAGTTGATACCGTTAAGGTTCACTATTTTAAGATTGCAACCTAATT
1 GTTCGCTGATTTAATATCGCAGTTGATATCGTTAAGGTTCGTTAATTTAAGATCGCAACCTAAGT
* *
102453820 TCATTCCATTTAATATCATGAACAATCTCATTT
66 TCATTCAATTTAATATCATGAACAATCTTATTT
102453853 TTGCTAGCTT
Statistics
Matches: 408, Mismatches: 77, Indels: 11
0.82 0.16 0.02
Matches are distributed among these distances:
391 3 0.01
392 267 0.65
393 135 0.33
394 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (393 bp):
GTTCGCTGATTTAATATCGCAGTTGATATCGTTAAGGTTCGTTAATTTAAGATCGCAACCTAAGT
TCATTCAATTTAATATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCTAAAC
AGCTCATTGATTTAAGATCGCAACTAATATCGTTAAGGTTCGCTAATTTAAGATCACAATATAAG
TTCATTCAATTTAATATCATGAACAACCATATCTAAGTCAGCTGATTTAATATCACTACTCTAAA
CAACTTGCCAATTTAAGATCGCAGATGATATCGTTAAGGTTCACTAATTTAAAATCGCAACCTAA
GTTCATTAAATTTAATATCACAAACAATCTTATCTAACTTAGCTGATTTAATATCACTACTATAA
ACA
Found at i:102459994 original size:12 final size:14
Alignment explanation
Indices: 102459964--102459996 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
102459954 TATTTTTATT
102459964 TAAAAATATTTTCA
1 TAAAAATATTTTCA
102459978 TAAAAATA-TTT-A
1 TAAAAATATTTTCA
102459990 TAAAAAT
1 TAAAAAT
102459997 TTACAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
13 3 0.16
14 8 0.42
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAAAATATTTTCA
Found at i:102460903 original size:46 final size:47
Alignment explanation
Indices: 102460853--102460942 Score: 155
Period size: 46 Copynumber: 1.9 Consensus size: 47
102460843 CAATACCACT
*
102460853 ATTTCACATAGAGTCACCAAAGTCAGTAAAAA-GAATTCTCCCTACC
1 ATTTCACATAGAGTCACCAAAGTCAATAAAAAGGAATTCTCCCTACC
*
102460899 ATTTCACATGGAGTCACCAAAGTCAATAAAAAGGAATTCTCCCT
1 ATTTCACATAGAGTCACCAAAGTCAATAAAAAGGAATTCTCCCT
102460943 GGTCCCTACC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
46 30 0.73
47 11 0.27
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (47 bp):
ATTTCACATAGAGTCACCAAAGTCAATAAAAAGGAATTCTCCCTACC
Found at i:102461854 original size:6 final size:6
Alignment explanation
Indices: 102461845--102461871 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
102461835 GGCTAACGCT
102461845 AAGGCA AAGGCA AAGGCA AAGGCA AAG
1 AAGGCA AAGGCA AAGGCA AAGGCA AAG
102461872 TTTATTTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.15, G:0.33, T:0.00
Consensus pattern (6 bp):
AAGGCA
Found at i:102461855 original size:18 final size:18
Alignment explanation
Indices: 102461832--102461871 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
102461822 AGTTCCAACA
* *
102461832 AAAGGCTAACGCTAAGGC
1 AAAGGCAAACGCAAAGGC
*
102461850 AAAGGCAAAGGCAAAGGC
1 AAAGGCAAACGCAAAGGC
102461868 AAAG
1 AAAG
102461872 TTTATTTGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.17, G:0.30, T:0.05
Consensus pattern (18 bp):
AAAGGCAAACGCAAAGGC
Found at i:102468069 original size:22 final size:23
Alignment explanation
Indices: 102468044--102468089 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
102468034 TAAAAACCAT
* *
102468044 AAATTTTA-TAAAATTTATAAAA
1 AAATTTTATTAAAAATCATAAAA
102468066 AAATTTTATTAAAAATCATAAAA
1 AAATTTTATTAAAAATCATAAAA
102468089 A
1 A
102468090 TTAATAATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
AAATTTTATTAAAAATCATAAAA
Found at i:102468495 original size:14 final size:14
Alignment explanation
Indices: 102468476--102468517 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
102468466 ATTTTTTGTG
*
102468476 ATTTTTAATAACTT
1 ATTTTTAATAAATT
*
102468490 ATTTTTAAAAAATT
1 ATTTTTAATAAATT
*
102468504 ATTTTTAATTAATT
1 ATTTTTAATAAATT
102468518 TCTAATAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTTTAATAAATT
Found at i:102476338 original size:13 final size:13
Alignment explanation
Indices: 102476320--102476351 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
102476310 AGGTTTAGCC
102476320 CTGTTGGAGGATG
1 CTGTTGGAGGATG
102476333 CTGTTGGAGGATG
1 CTGTTGGAGGATG
102476346 CTGTTG
1 CTGTTG
102476352 AAGTTCAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.09, G:0.44, T:0.34
Consensus pattern (13 bp):
CTGTTGGAGGATG
Found at i:102479877 original size:2 final size:2
Alignment explanation
Indices: 102479872--102479901 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
102479862 TATATTCTAG
*
102479872 GA GA GA GG GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
102479902 AACAAGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
GA
Found at i:102481209 original size:26 final size:26
Alignment explanation
Indices: 102481180--102481241 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
102481170 TATAGAATTT
* *
102481180 ATTTATTATATTATTATAAAACCAA-A
1 ATTTATTATATTA-TAAAAAAACAATA
*
102481206 ATTTA-TATCTTATAAAAAAACAATA
1 ATTTATTATATTATAAAAAAACAATA
*
102481231 AATTATTATAT
1 ATTTATTATAT
102481242 CCTTTATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
24 9 0.31
25 11 0.38
26 9 0.31
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
ATTTATTATATTATAAAAAAACAATA
Found at i:102483631 original size:14 final size:16
Alignment explanation
Indices: 102483609--102483640 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
102483599 AAATTTAGAA
102483609 TTTATTTTTTA-TATT
1 TTTATTTTTTAGTATT
102483624 TTTA-TTTTTAGTATT
1 TTTATTTTTTAGTATT
102483639 TT
1 TT
102483641 AGACTCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTATTTTTTAGTATT
Found at i:102486242 original size:21 final size:21
Alignment explanation
Indices: 102486216--102486257 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
102486206 TTGGTTTTGG
*
102486216 CTTTGATTAAAATTTATGTGA
1 CTTTGACTAAAATTTATGTGA
102486237 CTTTGACTAAAATTTATGTGA
1 CTTTGACTAAAATTTATGTGA
102486258 ATAAAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.45
Consensus pattern (21 bp):
CTTTGACTAAAATTTATGTGA
Found at i:102488991 original size:31 final size:31
Alignment explanation
Indices: 102488932--102488991 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
102488922 TGATTTATAA
* **
102488932 GTTATTATTATAAGGGTAAATATGTAAAATG
1 GTTATTATTATAAGGATAAATAAATAAAATG
102488963 GTTATTATTATAA-GATAAATAAAATAAAA
1 GTTATTATTATAAGGATAAAT-AAATAAAA
102488992 CAAATAAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 6 0.24
31 19 0.76
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (31 bp):
GTTATTATTATAAGGATAAATAAATAAAATG
Found at i:102489923 original size:22 final size:22
Alignment explanation
Indices: 102489857--102489982 Score: 101
Period size: 22 Copynumber: 5.4 Consensus size: 22
102489847 ACAGCTCGTA
* *
102489857 AGAGCTTACTGTTTCAGCTTATT
1 AGAGCTTACTG-TTCAGCTCAAT
* * *
102489880 GGAGCTTAAC-GATTTAGCTCAAA
1 AGAGCTT-ACTG-TTCAGCTCAAT
102489903 AGAGCTTACTGTTCAGCTCAAT
1 AGAGCTTACTGTTCAGCTCAAT
*
102489925 AGAGCTTACCGTTTTCAGCTCAAT
1 AGAGCTTA-C-TGTTCAGCTCAAT
*
102489949 AGAGCTTATTGTTCATTAGCTCAAT
1 AGAGCTTACTGTTC---AGCTCAAT
*
102489974 AAAGCTTAC
1 AGAGCTTAC
102489983 CGACCATGAC
Statistics
Matches: 82, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
22 23 0.28
23 22 0.27
24 22 0.27
25 15 0.18
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (22 bp):
AGAGCTTACTGTTCAGCTCAAT
Found at i:102489945 original size:46 final size:45
Alignment explanation
Indices: 102489856--102489985 Score: 143
Period size: 46 Copynumber: 2.8 Consensus size: 45
102489846 CACAGCTCGT
* * * *
102489856 AAGAGCTTACTGTTTCAGCTTATTGGAGCTTAACGATTTAGCTCAA
1 AAGAGCTTACTG-TTCAGCTCAATAGAGCTTACCGATTTAGCTCAA
*
102489902 AAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGTTTTCAGCTCAA
1 AAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGATTT-AGCTCAA
* * *
102489948 TAGAGCTTATTGTTCATTAGCTCAATAAAGCTTACCGA
1 AAGAGCTTACTGTTC---AGCTCAATAGAGCTTACCGA
102489986 CCATGACTCG
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
45 21 0.30
46 32 0.45
49 18 0.25
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (45 bp):
AAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGATTTAGCTCAA
Found at i:102489946 original size:24 final size:24
Alignment explanation
Indices: 102489857--102489984 Score: 104
Period size: 24 Copynumber: 5.5 Consensus size: 24
102489847 ACAGCTCGTA
* * *
102489857 AGAGCTTACTG-TTTCAGCTTATT
1 AGAGCTTACCGTTTTCAGCTCAAT
* * * *
102489880 GGAGCTTAACGATTT-AGCTCAAA
1 AGAGCTTACCGTTTTCAGCTCAAT
*
102489903 AGAGCTTA-C-TGTTCAGCTCAAT
1 AGAGCTTACCGTTTTCAGCTCAAT
102489925 AGAGCTTACCGTTTTCAGCTCAAT
1 AGAGCTTACCGTTTTCAGCTCAAT
**
102489949 AGAGCTTATTGTTCATT-AGCTCAAT
1 AGAGCTTACCGTT--TTCAGCTCAAT
*
102489974 AAAGCTTACCG
1 AGAGCTTACCG
102489985 ACCATGACTC
Statistics
Matches: 83, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
21 2 0.02
22 16 0.19
23 21 0.25
24 26 0.31
25 16 0.19
26 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (24 bp):
AGAGCTTACCGTTTTCAGCTCAAT
Found at i:102494226 original size:20 final size:20
Alignment explanation
Indices: 102494193--102494237 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
102494183 ATAGAAACTG
* *
102494193 ATAAAATTGTTATTTTGGAA
1 ATAAAATTGTTATTTAGAAA
102494213 ATAAAATT-TATATTTAGAAA
1 ATAAAATTGT-TATTTAGAAA
102494233 ATAAA
1 ATAAA
102494238 TTCTCACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (20 bp):
ATAAAATTGTTATTTAGAAA
Found at i:102497510 original size:40 final size:40
Alignment explanation
Indices: 102497455--102497531 Score: 122
Period size: 40 Copynumber: 1.9 Consensus size: 40
102497445 TCGTGACACG
102497455 CTCCCTGTTATGTCGCGAC-ACCCCTTGTGTTGCAACAACA
1 CTCCCTGTTATGTCGCGACAACCCC-TGTGTTGCAACAACA
102497495 CTCCCT-TGTATGTCGCGACAACCCCTGTGTTGCAACA
1 CTCCCTGT-TATGTCGCGACAACCCCTGTGTTGCAACA
102497532 CCGACCACGC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
39 1 0.03
40 29 0.83
41 5 0.14
ACGTcount: A:0.19, C:0.35, G:0.18, T:0.27
Consensus pattern (40 bp):
CTCCCTGTTATGTCGCGACAACCCCTGTGTTGCAACAACA
Found at i:102498286 original size:23 final size:18
Alignment explanation
Indices: 102498271--102498312 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
102498261 AATACTTAAG
102498271 TATA-TAATATAATAATA
1 TATATTAATATAATAATA
102498288 TATATTAATATAATAATA
1 TATATTAATATAATAATA
102498306 TAATATT
1 T-ATATT
102498313 TGAAAACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 4 0.17
18 14 0.61
19 5 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TATATTAATATAATAATA
Found at i:102498287 original size:8 final size:8
Alignment explanation
Indices: 102498274--102498310 Score: 56
Period size: 8 Copynumber: 4.4 Consensus size: 8
102498264 ACTTAAGTAT
102498274 ATAATATA
1 ATAATATA
102498282 ATAATATA
1 ATAATATA
102498290 TATTAATATA
1 -A-TAATATA
102498300 ATAATATA
1 ATAATATA
102498308 ATA
1 ATA
102498311 TTTGAAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 18 0.67
9 2 0.07
10 7 0.26
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATAATATA
Found at i:102498365 original size:17 final size:18
Alignment explanation
Indices: 102498343--102498384 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
102498333 AAATAAAACA
*
102498343 AAAGAAT-AAGAACAGAG
1 AAAGAATGAAAAACAGAG
*
102498360 AAAGAAATGAAAAAGAGAG
1 AAAG-AATGAAAAACAGAG
102498379 AAAGAA
1 AAAGAA
102498385 AGAAGGAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 4 0.19
18 5 0.24
19 12 0.57
ACGTcount: A:0.69, C:0.02, G:0.24, T:0.05
Consensus pattern (18 bp):
AAAGAATGAAAAACAGAG
Found at i:102500612 original size:14 final size:15
Alignment explanation
Indices: 102500584--102500612 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
102500574 TAAATTACTG
102500584 AATTTTATAATGATT
1 AATTTTATAATGATT
102500599 AATTTTAT-ATGATT
1 AATTTTATAATGATT
102500613 CATGATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
AATTTTATAATGATT
Found at i:102505848 original size:15 final size:15
Alignment explanation
Indices: 102505804--102505854 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
102505794 ATACTTAAGT
*
102505804 ATATAATATAATAAT
1 ATATAATATAATAAA
*
102505819 ATATATTA-ATATAAA
1 ATATAATATA-ATAAA
102505834 ATATAATATAATAAA
1 ATATAATATAATAAA
*
102505849 ACATAA
1 ATATAA
102505855 AAGAAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 1 0.03
15 28 0.93
16 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (15 bp):
ATATAATATAATAAA
Found at i:102506803 original size:43 final size:43
Alignment explanation
Indices: 102506726--102506810 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
102506716 ACAGGGATAA
102506726 TTCGACCTTGAGTCGATGAGGCACTAATATTGTCGTA-TGTTAC
1 TTCGACCTTGAGTCGATGAGGCACT-ATATTGTCGTACTGTTAC
* * *
102506769 TTCGACTTTGTGTCGATGAGGCACT-TCGTGTGTCGTACTGTT
1 TTCGACCTTGAGTCGATGAGGCACTAT-AT-TGTCGTACTGTT
102506811 TTCGATGGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
41 1 0.03
42 1 0.03
43 30 0.83
44 4 0.11
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.38
Consensus pattern (43 bp):
TTCGACCTTGAGTCGATGAGGCACTATATTGTCGTACTGTTAC
Found at i:102513464 original size:21 final size:22
Alignment explanation
Indices: 102513438--102513484 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
102513428 AGACTGAGAG
*
102513438 ACGGCCGTGTGACCTATC-CAC
1 ACGGCCATGTGACCTATCTCAC
*
102513459 ACGGCCATGTGGCCTATCTCAC
1 ACGGCCATGTGACCTATCTCAC
102513481 ACGG
1 ACGG
102513485 GCACGGCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.19, C:0.36, G:0.26, T:0.19
Consensus pattern (22 bp):
ACGGCCATGTGACCTATCTCAC
Found at i:102531255 original size:22 final size:22
Alignment explanation
Indices: 102531227--102531271 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
102531217 TATTATTCAC
102531227 AAATTTGTAATTTAATTTTTTT
1 AAATTTGTAATTTAATTTTTTT
102531249 AAATTTGTAATTTAATTTTTTT
1 AAATTTGTAATTTAATTTTTTT
102531271 A
1 A
102531272 CTTTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (22 bp):
AAATTTGTAATTTAATTTTTTT
Found at i:102531680 original size:14 final size:14
Alignment explanation
Indices: 102531661--102531699 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
102531651 TTAGGAAAGT
102531661 AAATCATTTTCCAA
1 AAATCATTTTCCAA
* *
102531675 AAATCATTTTTCGA
1 AAATCATTTTCCAA
*
102531689 AAGTCATTTTC
1 AAATCATTTTC
102531700 AGTGAAATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:102532730 original size:14 final size:14
Alignment explanation
Indices: 102532699--102532733 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
102532689 TGTCAAGTGT
*
102532699 TTTTTTTTTAAATA
1 TTTTATTTTAAATA
102532713 -TTTATTTTAAATA
1 TTTTATTTTAAATA
102532726 TTTTATTT
1 TTTTATTT
102532734 AGTATTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTATTTTAAATA
Found at i:102534773 original size:2 final size:2
Alignment explanation
Indices: 102534766--102534795 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
102534756 ATTTGGGTTT
102534766 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102534796 AAGTCAAGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:102537842 original size:18 final size:18
Alignment explanation
Indices: 102537805--102537843 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
102537795 TTGGAAATCA
*
102537805 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
102537823 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
102537841 AAA
1 AAA
102537844 ATTTTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:102543162 original size:218 final size:219
Alignment explanation
Indices: 102542614--102543293 Score: 943
Period size: 218 Copynumber: 3.0 Consensus size: 219
102542604 CTTTTGCACA
* *
102542614 AAATTTCCTAGAACCACCACCCCTATAGAA-TGGTCTAGAACCTCGATTAAACTGCCTAGTGCTT
1 AAATTTTCTAGAACCACCACCCCTATA-AAGTGGTCTAGAACCTCGATTGAACTGCCTAGTGCTT
* * *
102542678 TTATCATTATTACCACTGTGTTGAGCAACATTAGCCTGTAAAGGTACATTAGAAACAAAATCTTA
65 TTATCATTATTACAACTGTGTTGAGCAACATTAGCCTGTAAAGGTACATTAAAAACAAAATCTTG
* * *
102542743 TTGTCGAGCTTCACAATCAGTAAGCATCTCAGCAAGAAGATCAAGAGGGAGACACATTTCTGAAG
130 TTGTCGGGCTTAACAATCAGT----A----AGC------ATCAAGAGGGAGACACATTGCTGAAG
102542808 CTACAACTCAAATTGACTCATACTCCGCTGACAGACACG
181 CTACAACTCAAATTGACTCATACTCCGCTGACAGACACG
102542847 AAATTTTCTAGAACCACCACCCCTATAAAGTGGTCTAGAACCTCGATTGAACTGCCTAGTGCTTT
1 AAATTTTCTAGAACCACCACCCCTATAAAGTGGTCTAGAACCTCGATTGAACTGCCTAGTGCTTT
*
102542912 TATCATTATTACAACTGTGTTGAGCAACATTAGCCTGTAAAGGCACATTAAAAACAAAATCTTGT
66 TATCATTATTACAACTGTGTTGAGCAACATTAGCCTGTAAAGGTACATTAAAAACAAAATCTTGT
* *
102542977 TGTCGGGCTTAACAATCAGTAAGCA-CAAGAGGGAGACATATTGCTGAAGCTACAACTCAAATTT
131 TGTCGGGCTTAACAATCAGTAAGCATCAAGAGGGAGACACATTGCTGAAGCTACAACTCAAATTG
102543041 ACTCATACTCCGCTGACAGACACG
196 ACTCATACTCCGCTGACAGACACG
* *
102543065 AAATTTTCTAGAACCACCACCCCTATAAAGTGGTCTAGAAACTCGATTGAATTGCCTAGTGCTTT
1 AAATTTTCTAGAACCACCACCCCTATAAAGTGGTCTAGAACCTCGATTGAACTGCCTAGTGCTTT
102543130 TATCATTATTACAACTGTGTTGAGCAACATTAGCCTGTAAAGGTACATTAAAAACAAAATCTTGT
66 TATCATTATTACAACTGTGTTGAGCAACATTAGCCTGTAAAGGTACATTAAAAACAAAATCTTGT
102543195 TGTCGGGCTTAACAA-CAGTAAGCATCTCAGCAAGAAGATCAAGAGGGAGACACATTGCTGAAGC
131 TGTCGGGCTTAACAATCAGT----A----AGC------ATCAAGAGGGAGACACATTGCTGAAGC
* *
102543259 TACAACTCGAATTGACTTATACTCCGCTGACAGAC
182 TACAACTCAAATTGACTCATACTCCGCTGACAGAC
102543294 CAGCAAGAAT
Statistics
Matches: 413, Mismatches: 18, Indels: 33
0.89 0.04 0.07
Matches are distributed among these distances:
217 4 0.01
218 202 0.49
219 1 0.00
221 1 0.00
225 6 0.01
229 1 0.00
231 1 0.00
232 58 0.14
233 139 0.34
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (219 bp):
AAATTTTCTAGAACCACCACCCCTATAAAGTGGTCTAGAACCTCGATTGAACTGCCTAGTGCTTT
TATCATTATTACAACTGTGTTGAGCAACATTAGCCTGTAAAGGTACATTAAAAACAAAATCTTGT
TGTCGGGCTTAACAATCAGTAAGCATCAAGAGGGAGACACATTGCTGAAGCTACAACTCAAATTG
ACTCATACTCCGCTGACAGACACG
Found at i:102544008 original size:40 final size:41
Alignment explanation
Indices: 102543955--102544061 Score: 162
Period size: 40 Copynumber: 2.6 Consensus size: 41
102543945 GCTAACAGAA
* * *
102543955 AAACGCCGTAAAAGGTAAAGTATTAGCGGCATTTTT-GCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCATTTTTCGCAT
* *
102543995 AAACACCGCAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCATTTTTCGCAT
102544036 AAACGCCGCAAAAGGTAAAGCAATAG
1 AAACGCCGCAAAAGGTAAAGCAATAG
102544062 TGGAAACGCC
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 32 0.53
41 28 0.47
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (41 bp):
AAACGCCGCAAAAGGTAAAGCAATAGCGGCATTTTTCGCAT
Found at i:102544600 original size:5 final size:5
Alignment explanation
Indices: 102544590--102544616 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
102544580 GTTTGTTCTA
102544590 TTATG TTATG TTATG TTATG TTATG TT
1 TTATG TTATG TTATG TTATG TTATG TT
102544617 TTTTGTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.63
Consensus pattern (5 bp):
TTATG
Found at i:102547014 original size:104 final size:105
Alignment explanation
Indices: 102546834--102547101 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
102546824 TAACCGTTAT
* **
102546834 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
102546899 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
102546938 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
102547003 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
102547043 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
102547102 TTTATATACA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.53
105 71 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:102547461 original size:29 final size:29
Alignment explanation
Indices: 102547428--102547491 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
102547418 TAATCCACCA
102547428 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
102547457 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
102547487 CCCAA
1 CCCAA
102547492 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:102547465 original size:30 final size:30
Alignment explanation
Indices: 102547435--102547491 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
102547425 CCACCCAACT
102547435 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
102547464 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
102547492 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:102554486 original size:104 final size:104
Alignment explanation
Indices: 102554306--102554572 Score: 464
Period size: 104 Copynumber: 2.6 Consensus size: 104
102554296 TAACCGTTAT
* *
102554306 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
102554371 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
102554410 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
102554475 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
102554514 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
102554573 TTATATACAA
Statistics
Matches: 155, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
104 154 0.99
105 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:102554933 original size:29 final size:29
Alignment explanation
Indices: 102554900--102554963 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
102554890 TAATCCACCA
102554900 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
102554929 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
102554959 CCCAA
1 CCCAA
102554964 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:102554937 original size:30 final size:30
Alignment explanation
Indices: 102554907--102554963 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
102554897 CCACCCAACT
102554907 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
102554936 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
102554964 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:102557217 original size:14 final size:16
Alignment explanation
Indices: 102557183--102557224 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
102557173 TCATAGAAAT
*
102557183 AAATATTATTTAATTA
1 AAATATTATTTAATAA
102557199 AAATATT-TTTAA-AA
1 AAATATTATTTAATAA
*
102557213 AAATAATATTTA
1 AAATATTATTTA
102557225 TCTTAATGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 9 0.39
16 7 0.30
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATATTATTTAATAA
Found at i:102557610 original size:13 final size:13
Alignment explanation
Indices: 102557592--102557617 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102557582 TAACTAAAGG
102557592 GTTAAAATTTAAA
1 GTTAAAATTTAAA
102557605 GTTAAAATTTAAA
1 GTTAAAATTTAAA
102557618 TATGATAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:102559869 original size:21 final size:21
Alignment explanation
Indices: 102559816--102559876 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
102559806 AGGTAAATAC
*
102559816 GGCTGGCACAAAGCCATAATCA
1 GGCTGGCACAGAGCCAT-ATCA
* * * *
102559838 AGATAGCACAGAGCCATATTA
1 GGCTGGCACAGAGCCATATCA
102559859 GGCTGGCACAGAGCCATA
1 GGCTGGCACAGAGCCATA
102559877 AATAGATTAA
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
21 18 0.58
22 13 0.42
ACGTcount: A:0.36, C:0.25, G:0.25, T:0.15
Consensus pattern (21 bp):
GGCTGGCACAGAGCCATATCA
Found at i:102568159 original size:26 final size:27
Alignment explanation
Indices: 102568121--102568171 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
102568111 CTCTCTTTTT
102568121 TATTATTATTATATT-TCTTAATATTA
1 TATTATTATTATATTCTCTTAATATTA
*
102568147 TATTA-TATATATATTCTTTTAATAT
1 TATTATTAT-TATATTCTCTTAATAT
102568172 ATTAGGTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 3 0.14
26 11 0.50
27 8 0.36
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (27 bp):
TATTATTATTATATTCTCTTAATATTA
Found at i:102568172 original size:24 final size:23
Alignment explanation
Indices: 102568124--102568175 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
102568114 TCTTTTTTAT
*
102568124 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
102568147 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
102568171 TATTA
1 TATTA
102568176 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:102568219 original size:25 final size:25
Alignment explanation
Indices: 102568191--102568247 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
102568181 ATTCTAAATT
102568191 CTATATTACGTATATATATATT-ATA
1 CTATATTACGTATATATAT-TTAATA
* * *
102568216 CTATTTTATGTATATATCTTTAATA
1 CTATATTACGTATATATATTTAATA
102568241 CTATATT
1 CTATATT
102568248 TTTTATATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 2 0.07
25 25 0.93
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.53
Consensus pattern (25 bp):
CTATATTACGTATATATATTTAATA
Found at i:102568301 original size:22 final size:23
Alignment explanation
Indices: 102568271--102568337 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 23
102568261 TTTCTACATG
*
102568271 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
102568293 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
* *
102568318 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
102568338 TAATATTATC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:102568345 original size:20 final size:20
Alignment explanation
Indices: 102568320--102568377 Score: 57
Period size: 22 Copynumber: 2.9 Consensus size: 20
102568310 TTTTTACACT
102568320 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* *
102568340 ATATTAT-CACTATTTATTTTTT
1 ATATTATGTAC-A--TATTTTTA
102568362 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
102568378 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
19 7 0.23
20 8 0.26
21 4 0.13
22 12 0.39
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:102568376 original size:23 final size:23
Alignment explanation
Indices: 102568334--102568379 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
102568324 TATGTACATA
102568334 TTTTTAATATTATCACTATTTAT
1 TTTTTAATATTATCACTATTTAT
102568357 TTTTTATATATGTA-CA-TATTTAT
1 TTTTTA-ATAT-TATCACTATTTAT
102568380 GTAGTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 13 0.62
24 6 0.29
25 2 0.10
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (23 bp):
TTTTTAATATTATCACTATTTAT
Found at i:102568513 original size:16 final size:15
Alignment explanation
Indices: 102568489--102568536 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
102568479 TAATTATTAT
*
102568489 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
102568505 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
102568520 TATTTTATATACTTTA
1 TATTTTA-ATATTTTA
102568536 T
1 T
102568537 TATTCACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:102568524 original size:7 final size:8
Alignment explanation
Indices: 102568489--102568540 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
102568479 TAATTATTAT
*
102568489 TATTCTAA
1 TATTTTAA
*
102568497 TATTTTGA
1 TATTTTAA
102568505 TATTTTAA
1 TATTTTAA
102568513 TATTTT-A
1 TATTTTAA
102568520 TATTTTATA
1 TATTTTA-A
* *
102568529 TACTTTAT
1 TATTTTAA
102568537 TATT
1 TATT
102568541 CACATCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 22 0.61
9 7 0.19
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:102575734 original size:73 final size:74
Alignment explanation
Indices: 102575614--102575769 Score: 233
Period size: 73 Copynumber: 2.1 Consensus size: 74
102575604 ATTTCCGTTT
* * *
102575614 TTTCAATTTATGCTTTTCAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCCAGAGGTGAGATGAGCCTCAGGACACG
102575679 CTGAGGTAA
66 CTGAGGTAA
* * *
102575688 TTTCAATTTATGCTTTTC-AAAAATCAACTCATATTGCCAGAGGTGAGATGAGTCTCGGGGCACG
1 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCCAGAGGTGAGATGAGCCTCAGGACACG
*
102575752 CTGAGGTAT
66 CTGAGGTAA
*
102575761 TTTTAATTT
1 TTTCAATTT
102575770 CTATTTTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
73 56 0.76
74 18 0.24
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (74 bp):
TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCCAGAGGTGAGATGAGCCTCAGGACACG
CTGAGGTAA
Found at i:102575782 original size:14 final size:13
Alignment explanation
Indices: 102575758--102575804 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
102575748 CACGCTGAGG
102575758 TATTTTTAATTTC
1 TATTTTTAATTTC
102575771 TATTTTTCAATTTC
1 TATTTTT-AATTTC
**
102575785 TGCTTTTAATTTC
1 TATTTTTAATTTC
*
102575798 TGTTTTT
1 TATTTTT
102575805 CAAAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.17, C:0.11, G:0.04, T:0.68
Consensus pattern (13 bp):
TATTTTTAATTTC
Found at i:102575830 original size:100 final size:101
Alignment explanation
Indices: 102575691--102575976 Score: 384
Period size: 100 Copynumber: 2.9 Consensus size: 101
102575681 GAGGTAATTT
* * * * *
102575691 CAATTTATGCTTTTCAAAAATCAACTCATATTGCCAGAGGTGAGATGAGTCTCGGGGCACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* *
102575756 GGTATTTTTAATTTCTATTTTTCAAT-TTCTG-CTTT
66 GGTATTTTCAATTTCTATTTTTCAATCTT-TGCCTTA
* * *
102575791 TAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGTTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
102575856 GGTATTTTCAATTTCTGTTTTTCAATCTTTGCCTTA
66 GGTATTTTCAATTTCTATTTTTCAATCTTTGCCTTA
* * * *
102575892 CAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
102575955 GGTATTTTCAATTT-TCATTTTT
66 GGTATTTTCAATTTCT-ATTTTT
102575977 TTAATTTATG
Statistics
Matches: 164, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
98 1 0.01
99 63 0.38
100 83 0.51
101 17 0.10
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (101 bp):
CAATTTCTGCTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
GGTATTTTCAATTTCTATTTTTCAATCTTTGCCTTA
Found at i:102576099 original size:73 final size:74
Alignment explanation
Indices: 102575994--102576627 Score: 875
Period size: 73 Copynumber: 8.6 Consensus size: 74
102575984 ATGTTTCTAA
* * *
102575994 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
*
102576059 TTGTTTGTC
66 CTGTTTGTC
* * * * *
102576068 -AAAACTCAACTCATATTGTGAGAGGTAAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
*
102576132 CTGTTTTTC
66 CTGTTTGTC
* * * * *
102576141 AAAAAAGTCAACTCATATTGTGATAGGTGAGTTGAGCCTCAGGAAACGCTGAGGTAATTTCAATT
1 AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
*
102576206 TTTGTTTGTC
65 TCTGTTTGTC
* * *
102576216 -AAAACTCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
*
102576280 CTGTTTTTC
66 CTGTTTGTC
* * * * *
102576289 AAAAAATCAACTTATATTGCGATAGGTAAGTTGAGCCTTAGGACACGTTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
*
102576354 TTGTTTGTC
66 CTGTTTGTC
*
102576363 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
102576427 CTGTCTT-TC
66 CTGT-TTGTC
* *
102576436 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
*
102576501 TTTGTTTGTC
65 TCTGTTTGTC
* *
102576511 -AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
102576575 CTGTCTT-TC
66 CTGT-TTGTC
* *
102576584 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
102576628 TGCTAAGGTG
Statistics
Matches: 491, Mismatches: 59, Indels: 19
0.86 0.10 0.03
Matches are distributed among these distances:
73 250 0.51
74 77 0.16
75 164 0.33
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (74 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
CTGTTTGTC
Found at i:102576171 original size:148 final size:148
Alignment explanation
Indices: 102575974--102576624 Score: 1034
Period size: 148 Copynumber: 4.4 Consensus size: 148
102575964 AATTTTCATT
* * * * *
102575974 TTTTTAATTTATGTTTCTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * *
102576039 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGTGAGAGGTAAGTTGAGCC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
102576104 TCAAGACACATTGAGGTA
131 TCAAGACACGTTGAGGTA
* * * *
102576122 TTTTCAATTTCTGTTTTTCAAAAAAGTCAACTCATATTGTGATAGGTGAGTTGAGCCTCAGGAAA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
102576187 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGCGAGAGGTGAGTTAAGCC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
102576252 TCAAGACACGTTGAGGTA
131 TCAAGACACGTTGAGGTA
* * * *
102576270 TTTTCAATTTCTGTTTTTC-AAAAAATCAACTTATATTGCGATAGGTAAGTTGAGCCTTAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
102576334 CGTTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
102576399 TCAAGACACGTTGAGGTA
131 TCAAGACACGTTGAGGTA
* * * *
102576417 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
102576482 CGTTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
102576547 TCAAGACACGTTGAGGTA
131 TCAAGACACGTTGAGGTA
* * *
102576565 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
102576625 AGATGCTAAG
Statistics
Matches: 471, Mismatches: 31, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
147 137 0.29
148 334 0.71
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34
Consensus pattern (148 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TCAAGACACGTTGAGGTA
Found at i:102576524 original size:295 final size:296
Alignment explanation
Indices: 102575993--102576624 Score: 1032
Period size: 295 Copynumber: 2.1 Consensus size: 296
102575983 TATGTTTCTA
*
102575993 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* *
102576058 TTTGTTTGTCAAAACTCAACTCATATTGTGAGAGGTAAGTTGAGCCTCAAGACACATTGAGGTAT
66 TTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACATTGAGGTAT
* * * * * *
102576123 TTTCAATTTCTGTTTTTCAAAAAAGTCAACTCATATTGTGATAGGTGAGTTGAGCCTCAGGAAAC
131 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAAAC
* *
102576188 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGCGAGAGGTGAGTTAAGCCT
196 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCT
*
102576253 CAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTC
261 CAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTC
* * * * *
102576289 -AAAAAATCAACTTATATTGCGATAGGTAAGTTGAGCCTTAGGACACGTTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* *
102576353 TTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
66 TTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACATTGAGGTAT
* *
102576418 TTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
131 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAAAC
* *
102576483 GTTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCT
196 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCT
102576548 CAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTC
261 CAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTC
* *
102576584 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
102576625 AGATGCTAAG
Statistics
Matches: 306, Mismatches: 29, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
295 272 0.89
296 34 0.11
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (296 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
TTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACATTGAGGTAT
TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAAAC
GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCT
CAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTC
Found at i:102576760 original size:13 final size:14
Alignment explanation
Indices: 102576730--102576762 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
102576720 AGCTGAGGTA
102576730 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
102576744 TTTTCAAATAT-TGT
1 TTTTCAAAT-TCTGT
102576758 TTTTC
1 TTTTC
102576763 CAAAAAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.94
15 1 0.06
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.61
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:102576781 original size:92 final size:91
Alignment explanation
Indices: 102576565--102577073 Score: 295
Period size: 92 Copynumber: 5.6 Consensus size: 91
102576555 CGTTGAGGTA
* * * * * *
102576565 TTTTCAATTTCTGTCTTT-CAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AG
1 TTTTCAATATATGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCAC
* * * * * *
102576627 ATGCTAAGGTGTTTTCCATTTC-TGT
66 AAGCTGAGATATTTTCAAATTCTTGT
* * * * * * * * * *
102576652 TCTTCAATTTCTATGTTTCAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTC
1 TTTTCAATATATGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GC
* *
102576717 ATAAGCTGAGGTATTTTCAAATTC-TGT
64 ACAAGCTGAGATATTTTCAAATTCTTGT
* *
102576744 TTTTCAA-ATATTGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTTAGCCTCAGGA
1 TTTTCAATATA-TGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCA
* * *
102576808 CACGCTGAGATATTTTCAATTTCTTTTTT
65 CAAGCTGAGATATTTTCAAATTC--TTGT
* * * *
102576837 TTTTCAATTTATGTTTGT-CAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCAGGTC
1 TTTTCAATATATGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G-C
* * * *
102576901 ACACA-CCGATG-TATTTTCAATTGATGTTTT
64 ACA-AGCTGA-GATATTTTCAAAT--TCTTGT
* * * * *
102576931 TTTTTAATTTATGCTTTGT----AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGT
1 TTTTCAATATATG-TTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-
* *
102576992 CACATA-CCGAGATATTTTCAAAATC-TGT
63 CACA-AGCTGAGATATTTTCAAATTCTTGT
* * * *
102577020 TTTACAA-AT-T-TTGTTT---TAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCT
1 TTTTCAATATATGTT-TTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
102577074 TGGCTCACGT
Statistics
Matches: 345, Mismatches: 56, Indels: 42
0.78 0.13 0.09
Matches are distributed among these distances:
85 2 0.01
86 2 0.01
87 50 0.14
88 37 0.11
89 9 0.03
90 21 0.06
91 4 0.01
92 162 0.47
93 16 0.05
94 35 0.10
95 6 0.02
96 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (91 bp):
TTTTCAATATATGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCAC
AAGCTGAGATATTTTCAAATTCTTGT
Found at i:102576917 original size:184 final size:180
Alignment explanation
Indices: 102576583--102576920 Score: 389
Period size: 184 Copynumber: 1.9 Consensus size: 180
102576573 TTCTGTCTTT
* * * * * *
102576583 CAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGATGCTAAGGTGTTTTCCATTT
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAACACGCTAAGATATTTTCAATTT
* * * *
102576648 CTGTTCTTCAATTTCTATGTTTCAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTG
66 CTGTTCTTCAATTTCTATGTTTCAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTC
* *
102576713 ACTCATAAGCTGAGGTATTTTCAAATTCTGTTTTTCAAATATTGTTTTTC
131 ACTCACAAGCCGAGGTATTTTCAAATTCTGTTTTTCAAATATTGTTTTTC
* * *
102576763 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTTAGCCTCAGGACACGCTGAGATATTTTCAAT
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA--ACACGCTAAGATATTTTCAAT
* *
102576828 TTCTTTTTTTTTTCAA-TT-TATGTTTGTC-AAAAAAATCAACTCATATTGCAAGAGGTGAGTTG
64 TTC---TGTTCTTCAATTTCTATG-TT-TCAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTG
* *
102576890 AG-CTTCAGGTCACACA-CCGATGTATTTTCAA
124 AGCCTTCA-CTCACA-AGCCGAGGTATTTTCAA
102576921 TTGATGTTTT
Statistics
Matches: 130, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
180 39 0.30
182 18 0.14
183 8 0.06
184 54 0.42
185 11 0.08
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (180 bp):
CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAACACGCTAAGATATTTTCAATTT
CTGTTCTTCAATTTCTATGTTTCAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTC
ACTCACAAGCCGAGGTATTTTCAAATTCTGTTTTTCAAATATTGTTTTTC
Found at i:102576954 original size:94 final size:94
Alignment explanation
Indices: 102576672--102577073 Score: 342
Period size: 92 Copynumber: 4.4 Consensus size: 94
102576662 CTATGTTTCA
* * * * * * *
102576672 AAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGACTCATA-AGCTGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GTCACACA-CCGAGATATTTTC
* * * *
102576735 AA---ATTCTGTTTTTCAA-ATATTGTTTTTCC
64 AATTGATTTTTTTTTTCAATTTA-TGTTTGT-C
* * *
102576764 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTTAGCCTCAGG--ACACGCTGAGATATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGATATTTTCAA
**
102576827 TTTCTTTTTTTTTTCAATTTATGTTTGTC
66 TTGATTTTTTTTTTCAATTTATGTTTGTC
* *
102576856 AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCAGGTCACACACCGATG-TATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGA-GATATTTTCA
102576920 ATTGATGTTTTTTTTT-AATTTATGCTTTGT-
65 ATTGAT-TTTTTTTTTCAATTTATG-TTTGTC
* * *
102576950 --AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGATATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGATATTTTCAA
* * * *
102577013 ---AATCTGTTTTACAAATTT-TGTTT-T-
66 TTGATTTTTTTTTTC-AATTTATGTTTGTC
* *
102577037 --AAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
102577074 TGGCTCACGT
Statistics
Matches: 264, Mismatches: 32, Indels: 33
0.80 0.10 0.10
Matches are distributed among these distances:
87 35 0.13
88 9 0.03
89 3 0.01
90 21 0.08
91 1 0.00
92 133 0.50
93 18 0.07
94 29 0.11
95 15 0.06
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (94 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGATATTTTCAA
TTGATTTTTTTTTTCAATTTATGTTTGTC
Found at i:102577123 original size:87 final size:86
Alignment explanation
Indices: 102576858--102577177 Score: 225
Period size: 87 Copynumber: 3.6 Consensus size: 86
102576848 TGTTTGTCAA
* * * * *
102576858 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCAGG-TCACACACCGATG-TATTTTCAA
1 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTC-GGCTCACATACCGA-GATATTTTCAA
* * * **
102576921 TTGATGTTTTTTTTTAATTTATGCTTTGT
64 --AAT-CTATTTTAAAATTTA-G-TTT-T
* *
102576950 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGATATTTTCAAAA
1 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGATATTTTCAAAA
* *
102577015 TCTGTTTTACAAATTTTGTTTT
66 TCTATTTTA-AAATTTAGTTTT
** * * * * * **
102577037 AAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGATATTTTCAAAA
*
102577102 TCTATTTT-TAATGTCTAGTTTT
66 TCTATTTTAAAAT-T-TAGTTTT
* * * * * *
102577124 AAAGAGTCAATTCATATTACGAGAAATGAGTTAAG-CTCAGGATCACATGCCGAG
1 AAA-AATCAACTCATATTACGAGAAGTGAGTTGAGCCTC-GGCTCACATACCGAG
102577178 TAAAGAATAA
Statistics
Matches: 187, Mismatches: 34, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
85 3 0.02
86 1 0.01
87 73 0.39
88 40 0.21
89 6 0.03
90 7 0.04
91 3 0.02
92 54 0.29
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (86 bp):
AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGATATTTTCAAAA
TCTATTTTAAAATTTAGTTTT
Found at i:102577820 original size:18 final size:18
Alignment explanation
Indices: 102577797--102577852 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
102577787 CCACCACCAA
102577797 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
102577815 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
102577827 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
102577845 CTCCACTA
1 CTCCACTA
102577853 CCTACTCCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 7 0.23
13 3 0.10
14 1 0.03
16 1 0.03
17 3 0.10
18 15 0.50
ACGTcount: A:0.25, C:0.48, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:102577823 original size:30 final size:30
Alignment explanation
Indices: 102577787--102577872 Score: 154
Period size: 30 Copynumber: 2.9 Consensus size: 30
102577777 CTAGCCTTTG
102577787 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
102577817 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
102577847 CCACTACCTACTCCACTAGCCACACT
1 CCACCACCAACTCCACTAGCCACACT
102577873 CCACCACCAC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.27, C:0.50, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:102578388 original size:23 final size:23
Alignment explanation
Indices: 102578351--102578432 Score: 62
Period size: 23 Copynumber: 3.5 Consensus size: 23
102578341 TTTTTTTTGT
102578351 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
102578374 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
102578396 TATTAGGTATATTCTAAAT-TCTA
1 TATTATATATATTCTTAATAT-TA
102578419 TATTACGTATATAT
1 TATTA--TATATAT
102578433 ATATATACTA
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
22 17 0.38
23 19 0.42
24 4 0.09
25 5 0.11
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:102578550 original size:25 final size:25
Alignment explanation
Indices: 102578416--102578561 Score: 95
Period size: 25 Copynumber: 5.8 Consensus size: 25
102578406 ATTCTAAATT
* * * *
102578416 CTATATTACGTATATA-TATATATA
1 CTATATTATGTATATATTTTTTACA
* * *
102578440 CTAT-TTATGTATATATCTTTAATA
1 CTATATTATGTATATATTTTTTACA
*
102578464 CTATATTATTTATATATATTTTTCTACA
1 CTATATTA--TGTATATATTTTT-TACA
* *
102578492 TGTTATCTTATGTATATA--TTTTA-A
1 --CTATATTATGTATATATTTTTTACA
* *
102578516 TTATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATTTTTTACA
*
102578541 CTATATTATGTACATATTTTT
1 CTATATTATGTATATATTTTT
102578562 AATATTATCA
Statistics
Matches: 95, Mismatches: 17, Indels: 19
0.73 0.13 0.15
Matches are distributed among these distances:
22 14 0.15
23 10 0.11
24 18 0.19
25 24 0.25
26 3 0.03
27 11 0.12
28 9 0.09
30 6 0.06
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.55
Consensus pattern (25 bp):
CTATATTATGTATATATTTTTTACA
Found at i:102578550 original size:47 final size:49
Alignment explanation
Indices: 102578439--102578566 Score: 127
Period size: 47 Copynumber: 2.5 Consensus size: 49
102578429 ATATATATAT
102578439 ACTATTTATGTATATATCTTTAATACTATATTATTTATATATATTTTTCTAC
1 ACTATTTATGTATATAT-TTTAATA-TATATTA-TTATATATATTTTTCTAC
* * *
102578491 ATGTTATCTTATGTATATATTTTAAT-TATATTA-TGTATGTATTTTT-TAC
1 A--CTAT-TTATGTATATATTTTAATATATATTATTATATATATTTTTCTAC
*
102578540 ACTATATTATGTACATATTTTTAATAT
1 ACTAT-TTATGTATATA-TTTTAATAT
102578567 TATCACTATT
Statistics
Matches: 65, Mismatches: 6, Indels: 13
0.77 0.07 0.15
Matches are distributed among these distances:
47 13 0.20
48 7 0.11
49 5 0.08
50 11 0.17
52 8 0.12
54 9 0.14
55 12 0.18
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (49 bp):
ACTATTTATGTATATATTTTAATATATATTATTATATATATTTTTCTAC
Found at i:102578568 original size:20 final size:20
Alignment explanation
Indices: 102578543--102578600 Score: 57
Period size: 22 Copynumber: 2.9 Consensus size: 20
102578533 TTTTTACACT
102578543 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* *
102578563 ATATTAT-CACTATTTATTTTTT
1 ATATTATGTAC-A--TATTTTTA
102578585 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
102578601 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
19 7 0.23
20 8 0.26
21 4 0.13
22 12 0.39
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:102578599 original size:23 final size:23
Alignment explanation
Indices: 102578557--102578602 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
102578547 TATGTACATA
102578557 TTTTTAATATTATCACTATTTAT
1 TTTTTAATATTATCACTATTTAT
102578580 TTTTTATATATGTA-CA-TATTTAT
1 TTTTTA-ATAT-TATCACTATTTAT
102578603 GTAGTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 13 0.62
24 6 0.29
25 2 0.10
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (23 bp):
TTTTTAATATTATCACTATTTAT
Found at i:102578739 original size:16 final size:15
Alignment explanation
Indices: 102578715--102578762 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
102578705 TAATTATTAT
*
102578715 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
102578731 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
102578746 TATTTTATATACTTTA
1 TATTTTA-ATATTTTA
102578762 T
1 T
102578763 TATTCACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:102578750 original size:7 final size:8
Alignment explanation
Indices: 102578715--102578766 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
102578705 TAATTATTAT
*
102578715 TATTCTAA
1 TATTTTAA
*
102578723 TATTTTGA
1 TATTTTAA
102578731 TATTTTAA
1 TATTTTAA
102578739 TATTTT-A
1 TATTTTAA
102578746 TATTTTATA
1 TATTTTA-A
* *
102578755 TACTTTAT
1 TATTTTAA
102578763 TATT
1 TATT
102578767 CACATCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 22 0.61
9 7 0.19
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:102591837 original size:42 final size:42
Alignment explanation
Indices: 102591775--102591877 Score: 161
Period size: 42 Copynumber: 2.5 Consensus size: 42
102591765 CTTCTACCGG
* * *
102591775 TCCTACTTCTTCCGGTTTACTTAGGAGTTCTCCTATGACTGC
1 TCCTACTTCTTCCGGGTTACTTAGGAGTTCTCCTATAACTAC
102591817 TCCTACTTCTTCCGGGTTACTTAGGAGTTCTCCTATAACTAC
1 TCCTACTTCTTCCGGGTTACTTAGGAGTTCTCCTATAACTAC
* *
102591859 TCTTACTTTTTCCGGGTTA
1 TCCTACTTCTTCCGGGTTA
102591878 ATTGGGAATC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.16, C:0.27, G:0.16, T:0.42
Consensus pattern (42 bp):
TCCTACTTCTTCCGGGTTACTTAGGAGTTCTCCTATAACTAC
Found at i:102592602 original size:6 final size:6
Alignment explanation
Indices: 102592591--102592615 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
102592581 AGGAGTTTTT
102592591 TTTTAG TTTTAG TTTTAG TTTTAG T
1 TTTTAG TTTTAG TTTTAG TTTTAG T
102592616 GTTCTAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (6 bp):
TTTTAG
Found at i:102603392 original size:2 final size:2
Alignment explanation
Indices: 102603385--102603417 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
102603375 AAGTCTTCAT
102603385 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
102603418 TTGCTATCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:102607172 original size:32 final size:32
Alignment explanation
Indices: 102607136--102607197 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
102607126 TACTTTTAGG
*
102607136 TTTAACTGTTAGCAT-TAATTGTTTTGTTAAGT
1 TTTAACTGTTAGCATGT-ATTGTTTGGTTAAGT
*
102607168 TTTAACTGTTAGTATGTATTGTTTGGTTAA
1 TTTAACTGTTAGCATGTATTGTTTGGTTAA
102607198 ATTTGTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.24, C:0.05, G:0.18, T:0.53
Consensus pattern (32 bp):
TTTAACTGTTAGCATGTATTGTTTGGTTAAGT
Found at i:102607338 original size:30 final size:29
Alignment explanation
Indices: 102607304--102607389 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 29
102607294 ATTGTTGAAC
102607304 TTAAATTTTAAAATTTAAAATATAAGAAGA
1 TTAAATTTTAAAATTTAAAATATAA-AAGA
**
102607334 TTAAATTTATTAAAAAATAAAA-ATAAAAGA
1 TTAAA-TT-TTAAAATTTAAAATATAAAAGA
*
102607364 TTAAA-TTTAAAATTTAAAATTTAAAA
1 TTAAATTTTAAAATTTAAAATATAAAA
102607390 TTTTAGAAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
27 11 0.23
28 6 0.12
30 14 0.29
31 6 0.12
32 11 0.23
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (29 bp):
TTAAATTTTAAAATTTAAAATATAAAAGA
Found at i:102607374 original size:14 final size:14
Alignment explanation
Indices: 102607304--102607389 Score: 50
Period size: 14 Copynumber: 5.9 Consensus size: 14
102607294 ATTGTTGAAC
* *
102607304 TTAAATTTTAAAAT
1 TTAAAATTTAAAAA
*
102607318 TTAAAATATAAGAAGA
1 TTAAAATTTAA-AA-A
*
102607334 TTAAATTTATTAAAAA
1 TTAAA-AT-TTAAAAA
* *
102607350 ATAAAA-ATAAAAGA
1 TTAAAATTTAAAA-A
*
102607364 TT-AAATTTAAAAT
1 TTAAAATTTAAAAA
102607377 TTAAAATTTAAAA
1 TTAAAATTTAAAA
102607390 TTTTAGAAAG
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
13 10 0.19
14 26 0.48
15 2 0.04
16 10 0.19
17 3 0.06
18 3 0.06
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (14 bp):
TTAAAATTTAAAAA
Found at i:102607378 original size:7 final size:7
Alignment explanation
Indices: 102607366--102607392 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
102607356 ATAAAAGATT
102607366 AAATTTA
1 AAATTTA
102607373 AAATTTA
1 AAATTTA
102607380 AAATTTA
1 AAATTTA
102607387 AAATTT
1 AAATTT
102607393 TAGAAAGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AAATTTA
Found at i:102607440 original size:27 final size:26
Alignment explanation
Indices: 102607379--102607441 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 26
102607369 TTTAAAATTT
*
102607379 AAAATTTAAAATTTTAGAAAGATAAA
1 AAAATTTAAAATTTTAGAAAAATAAA
102607405 AAAATTTTAAAATTTTAGAAAAATATAA
1 AAAA-TTTAAAATTTTAGAAAAATA-AA
102607433 AAAATTTAA
1 AAAATTTAA
102607442 CCTGAAATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 4 0.12
27 24 0.71
28 6 0.18
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (26 bp):
AAAATTTAAAATTTTAGAAAAATAAA
Found at i:102609345 original size:13 final size:13
Alignment explanation
Indices: 102609327--102609352 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102609317 TCAGTTCTGT
102609327 AAATCCACTAGCA
1 AAATCCACTAGCA
102609340 AAATCCACTAGCA
1 AAATCCACTAGCA
102609353 CAATTCACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.31, G:0.08, T:0.15
Consensus pattern (13 bp):
AAATCCACTAGCA
Found at i:102609663 original size:34 final size:37
Alignment explanation
Indices: 102609619--102609699 Score: 87
Period size: 37 Copynumber: 2.3 Consensus size: 37
102609609 GTTTATGAAG
* * *
102609619 AAAACAAAAAC-C-TAATATAA-TAGAGAAAATAAGT
1 AAAACTAAAACTCTTAATAAAACTAGAGAAAATAAAT
* * *
102609653 AAAACTAAAACTCTTAATAAAACTTGATATAATAAAT
1 AAAACTAAAACTCTTAATAAAACTAGAGAAAATAAAT
102609690 AAAACTAAAA
1 AAAACTAAAA
102609700 TTCCTATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
34 10 0.26
35 1 0.03
36 7 0.18
37 20 0.53
ACGTcount: A:0.63, C:0.10, G:0.05, T:0.22
Consensus pattern (37 bp):
AAAACTAAAACTCTTAATAAAACTAGAGAAAATAAAT
Found at i:102617684 original size:20 final size:20
Alignment explanation
Indices: 102617648--102617687 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
102617638 TAAAAAAATT
*
102617648 ATAATTTTTATACTTTTTAA
1 ATAATTTTAATACTTTTTAA
102617668 ATAATTTTAATTA-TTTTTAA
1 ATAATTTTAA-TACTTTTTAA
102617688 TTTATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
ATAATTTTAATACTTTTTAA
Found at i:102617690 original size:16 final size:18
Alignment explanation
Indices: 102617669--102617704 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
102617659 ACTTTTTAAA
102617669 TAATTT-TAAT-TATTTT
1 TAATTTATAATATATTTT
102617685 TAATTTATAATATATTTT
1 TAATTTATAATATATTTT
102617703 TA
1 TA
102617705 TTATTTTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
18 8 0.44
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TAATTTATAATATATTTT
Found at i:102618183 original size:17 final size:17
Alignment explanation
Indices: 102618161--102618194 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
102618151 AAAATGCTTA
102618161 TAAACAAATATTAATTT
1 TAAACAAATATTAATTT
102618178 TAAACAAATATTAATTT
1 TAAACAAATATTAATTT
102618195 ATTGATTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAACAAATATTAATTT
Found at i:102618728 original size:5 final size:5
Alignment explanation
Indices: 102618718--102618748 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
102618708 AATTTGTGTG
102618718 TTATT TTATT TTATT TTATT TTATT TT-TT TT
1 TTATT TTATT TTATT TTATT TTATT TTATT TT
102618749 CACAAATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTATT
Found at i:102622036 original size:47 final size:47
Alignment explanation
Indices: 102621979--102622235 Score: 365
Period size: 47 Copynumber: 5.4 Consensus size: 47
102621969 ATTGATGTAC
* * *
102621979 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
102622026 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
102622075 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
102622122 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
102622169 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
102622216 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
102622236 TCCCGAAGGG
Statistics
Matches: 192, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 150 0.78
49 40 0.21
50 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:102622113 original size:22 final size:22
Alignment explanation
Indices: 102622086--102622207 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
102622076 CATGTGTATG
102622086 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
102622108 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
102622133 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
102622155 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
102622180 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
102622202 TGTGAT
1 TGTGAT
102622208 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:102624973 original size:39 final size:40
Alignment explanation
Indices: 102624785--102625136 Score: 534
Period size: 39 Copynumber: 8.9 Consensus size: 40
102624775 CTCGACAATG
*
102624785 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
*
102624825 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
*
102624865 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
102624905 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
*
102624945 ATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
*
102624984 ATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
102625023 AT-CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * * * *
102625062 ATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * *
102625101 AT-CGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
102625137 CGTGTATTCG
Statistics
Matches: 292, Mismatches: 17, Indels: 7
0.92 0.05 0.02
Matches are distributed among these distances:
38 16 0.05
39 139 0.48
40 137 0.47
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
Found at i:102628587 original size:47 final size:47
Alignment explanation
Indices: 102628530--102628786 Score: 356
Period size: 47 Copynumber: 5.4 Consensus size: 47
102628520 ATTGATGTAC
* * *
102628530 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
102628577 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
102628626 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATAAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
102628673 ACA-TGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
102628720 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
102628767 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
102628787 TCCCGAAGGG
Statistics
Matches: 190, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 148 0.78
49 40 0.21
50 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:102628664 original size:22 final size:22
Alignment explanation
Indices: 102628637--102628758 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
102628627 CATGTGTATG
102628637 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
102628659 TGTGATAAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
102628684 TGCGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
102628706 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
102628731 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
102628753 TGTGAT
1 TGTGAT
102628759 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:102639343 original size:37 final size:37
Alignment explanation
Indices: 102639293--102639370 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
102639283 TTTATATTTC
* *
102639293 TTATTTTATAATTTTGTCTGATTGATGCCAAAACATT
1 TTATTTTATAATTTAGTCCGATTGATGCCAAAACATT
102639330 TTATTTTATAATTTAGTCCGATTGATGCCAAAACATT
1 TTATTTTATAATTTAGTCCGATTGATGCCAAAACATT
102639367 TTAT
1 TTAT
102639371 ACTTATCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (37 bp):
TTATTTTATAATTTAGTCCGATTGATGCCAAAACATT
Found at i:102640991 original size:98 final size:98
Alignment explanation
Indices: 102640822--102641008 Score: 338
Period size: 98 Copynumber: 1.9 Consensus size: 98
102640812 AGAGGCTATA
102640822 GAAATGAATTTGTAATGCACATAAGTGTTTTGCCATAACACATCAACCACGGGTTTTTATCACAT
1 GAAATGAATTTGTAATGCACATAAGTGTTTTGCCATAACACATCAACCACGGGTTTTTATCACAT
102640887 CTTATATCACACATGCACATAAATCTCCTATTG
66 CTTATATCACACATGCACATAAATCTCCTATTG
** *
102640920 GAAATGAATTTGTAATGCACATAAGTGTTTTGCCATAAGGCATCAACCATGGGTTTTTATCACAT
1 GAAATGAATTTGTAATGCACATAAGTGTTTTGCCATAACACATCAACCACGGGTTTTTATCACAT
*
102640985 CTTATATCACATATGCACATAAAT
66 CTTATATCACACATGCACATAAAT
102641009 TAAGCTATTG
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 85 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.33
Consensus pattern (98 bp):
GAAATGAATTTGTAATGCACATAAGTGTTTTGCCATAACACATCAACCACGGGTTTTTATCACAT
CTTATATCACACATGCACATAAATCTCCTATTG
Found at i:102641274 original size:99 final size:99
Alignment explanation
Indices: 102641096--102641274 Score: 223
Period size: 99 Copynumber: 1.8 Consensus size: 99
102641086 ATATCATTTG
* * * * * *
102641096 AAATCAAATCGTGGAAGCAATGTTTAACACATATTTCCACTTAGCATTATTTCGTAGTACTTATA
1 AAATCAAATCGTGGAAACAATGTTTAACACATATTTACACTTAGCATCATTTCATAGCACTTACA
* * *
102641161 ATTGATGTAGCATTATTTCACCATTCTATTATCC
66 ATGGACGCAGCATTATTTCACCATTCTATTATCC
* * ** *
102641195 AAATCATATTGTGGAAACAATGTTTAACACATATTTATGCTTAGCATCATTTCATAGCACTTACC
1 AAATCAAATCGTGGAAACAATGTTTAACACATATTTACACTTAGCATCATTTCATAGCACTTACA
*
102641260 ATGGACGCATCATTA
66 ATGGACGCAGCATTA
102641275 CGTGTGTATA
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
99 65 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (99 bp):
AAATCAAATCGTGGAAACAATGTTTAACACATATTTACACTTAGCATCATTTCATAGCACTTACA
ATGGACGCAGCATTATTTCACCATTCTATTATCC
Found at i:102642840 original size:15 final size:17
Alignment explanation
Indices: 102642822--102642853 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
102642812 TAGCATAATT
102642822 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
102642837 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
102642854 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:102649277 original size:15 final size:17
Alignment explanation
Indices: 102649259--102649290 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
102649249 TAGCATAATT
102649259 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
102649274 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
102649291 CAAGTATCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:102654017 original size:23 final size:22
Alignment explanation
Indices: 102653989--102654073 Score: 75
Period size: 21 Copynumber: 3.9 Consensus size: 22
102653979 TTTACCGATC
* *
102653989 AGGCACTTTATGTGTCGTATTT
1 AGGCACCTCATGTGTCGTATTT
* * *
102654011 CAGGCACCTCGTGTGCCATA-TT
1 -AGGCACCTCATGTGTCGTATTT
*
102654033 AGGCACCTCGTGTGTCGT-TTT
1 AGGCACCTCATGTGTCGTATTT
* *
102654054 AGGCACTTTATGTGTCGTAT
1 AGGCACCTCATGTGTCGTAT
102654074 ACTGATCACG
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 33 0.66
22 3 0.06
23 14 0.28
ACGTcount: A:0.16, C:0.21, G:0.25, T:0.38
Consensus pattern (22 bp):
AGGCACCTCATGTGTCGTATTT
Found at i:102654055 original size:21 final size:21
Alignment explanation
Indices: 102653999--102654059 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 21
102653989 AGGCACTTTA
102653999 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGT-TTT-AGGCACCTCG
* * *
102654022 TGTGCCATATTAGGCACCTCG
1 TGTGTCGTTTTAGGCACCTCG
102654043 TGTGTCGTTTTAGGCAC
1 TGTGTCGTTTTAGGCAC
102654060 TTTATGTGTC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 24 0.75
22 2 0.06
23 6 0.19
ACGTcount: A:0.15, C:0.25, G:0.26, T:0.34
Consensus pattern (21 bp):
TGTGTCGTTTTAGGCACCTCG
Found at i:102656479 original size:26 final size:26
Alignment explanation
Indices: 102656444--102656494 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
102656434 AATGTGAAAG
*
102656444 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
102656470 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
102656495 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:102656506 original size:103 final size:104
Alignment explanation
Indices: 102656366--102656588 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
102656356 TGTATATAAA
** * *
102656366 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
102656430 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
102656469 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
102656534 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
102656573 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
102656589 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 90 0.80
104 22 0.20
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:102656653 original size:26 final size:26
Alignment explanation
Indices: 102656618--102656669 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
102656608 AAATGAAAAG
* *
102656618 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
102656644 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
102656670 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:102656656 original size:70 final size:72
Alignment explanation
Indices: 102656507--102656657 Score: 243
Period size: 72 Copynumber: 2.1 Consensus size: 72
102656497 TCATTGGTGG
* *
102656507 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
102656572 GAGGGGT
66 GAGGGGT
***
102656579 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
102656642 GAGGGGT
66 GAGGGGT
102656649 TGCTAAGTG
1 TGCTAAGTG
102656658 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 20 0.27
71 24 0.32
72 30 0.41
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:102663632 original size:104 final size:104
Alignment explanation
Indices: 102663452--102663675 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
102663442 TGTATATAAA
** * *
102663452 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
102663517 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
102663556 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
102663620 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
102663660 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
102663676 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:102663740 original size:26 final size:26
Alignment explanation
Indices: 102663705--102663756 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
102663695 AAATGAAAAG
* *
102663705 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
102663731 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
102663757 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:102663743 original size:70 final size:72
Alignment explanation
Indices: 102663594--102663744 Score: 243
Period size: 72 Copynumber: 2.1 Consensus size: 72
102663584 TCATTGGTGG
* *
102663594 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
102663659 GAGGGGT
66 GAGGGGT
***
102663666 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
102663729 GAGGGGT
66 GAGGGGT
102663736 TGCTAAGTG
1 TGCTAAGTG
102663745 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 20 0.27
71 24 0.32
72 30 0.41
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:102665069 original size:33 final size:33
Alignment explanation
Indices: 102665044--102665150 Score: 151
Period size: 33 Copynumber: 3.2 Consensus size: 33
102665034 ATCCTTCCAA
102665044 CACACCAATGCTCATAAGAGCTAATCCAACCAT
1 CACACCAATGCTCATAAGAGCTAATCCAACCAT
* *
102665077 CACACCAATACTCATAAGAGCTAAACCAACCAT
1 CACACCAATGCTCATAAGAGCTAATCCAACCAT
* * ** *
102665110 CACACCAATGCTTATAAGAGTTAAAGCAATCAT
1 CACACCAATGCTCATAAGAGCTAATCCAACCAT
102665143 CACACCAA
1 CACACCAA
102665151 ACAGAGAGTA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.43, C:0.31, G:0.08, T:0.18
Consensus pattern (33 bp):
CACACCAATGCTCATAAGAGCTAATCCAACCAT
Done.