Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 306 of 362
Found at i:102667097 original size:12 final size:12
Alignment explanation
Indices: 102667080--102667111 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
102667070 TAGTTAGAAA
102667080 AAGAAATTATTG
1 AAGAAATTATTG
102667092 AAGAAATTATTG
1 AAGAAATTATTG
102667104 AAGAAATT
1 AAGAAATT
102667112 GGGTAAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (12 bp):
AAGAAATTATTG
Found at i:102673146 original size:212 final size:213
Alignment explanation
Indices: 102672765--102673149 Score: 693
Period size: 212 Copynumber: 1.8 Consensus size: 213
102672755 ATTGGGCAAT
* * *
102672765 TTACACTTTTGGGCTCTTATACTTTTCAAAATTTATAATTTGATTCTTTTTACCAAAATCTCATA
1 TTACACTTTTGGGATCTTATACTTTTCAAAATTTATAATTTGATCCTTTTTACCAAAATCTCAAA
102672830 TTCACAACCATTCTCAAATAGTTCCTTTTCAAAAAATCAAATTAATTCATTAAGATTTCATTTAT
66 TTCACAACCATTCTCAAATAGTTCCTTTTCAAAAAATCAAATTAATTCATTAAGATTTCATTTAT
102672895 TACACTTGTTTTCAAATGATTATTCATATTAAGATTATTATGTCTGGACTAACAATACATTGTAC
131 TACACTTGTTTTCAAATGATTATTCATATTAAGATTATTATGTCTGGACTAACAATACATTGTAC
102672960 ATAAAATTCAATAACATA
196 ATAAAATTCAATAACATA
*
102672978 TTACAC-TTTGGGATCTTATACTTTTCAAAATTTATAATTTGGTCCTTTTTACCAAAATCTCAAA
1 TTACACTTTTGGGATCTTATACTTTTCAAAATTTATAATTTGATCCTTTTTACCAAAATCTCAAA
*
102673042 TTCACAACCATTCTCAAAT-GTTTCCTTTTCAAAAAATCAAATTAATTCTTTAAGATTTCATTTA
66 TTCACAACCATTCTCAAATAG-TTCCTTTTCAAAAAATCAAATTAATTCATTAAGATTTCATTTA
*
102673106 TTACACTTGTTTTCAAATGATTATTCATATTAGGATTATTATGT
130 TTACACTTGTTTTCAAATGATTATTCATATTAAGATTATTATGT
102673150 TGTCTATAAG
Statistics
Matches: 165, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
211 1 0.01
212 158 0.96
213 6 0.04
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (213 bp):
TTACACTTTTGGGATCTTATACTTTTCAAAATTTATAATTTGATCCTTTTTACCAAAATCTCAAA
TTCACAACCATTCTCAAATAGTTCCTTTTCAAAAAATCAAATTAATTCATTAAGATTTCATTTAT
TACACTTGTTTTCAAATGATTATTCATATTAAGATTATTATGTCTGGACTAACAATACATTGTAC
ATAAAATTCAATAACATA
Found at i:102676528 original size:16 final size:16
Alignment explanation
Indices: 102676495--102676528 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102676485 TGAAAATGTT
* *
102676495 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
102676511 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
102676527 AA
1 AA
102676529 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:102679354 original size:21 final size:21
Alignment explanation
Indices: 102679328--102679368 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
102679318 AGACGAGCAA
* *
102679328 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
102679349 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
102679369 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:102681305 original size:16 final size:16
Alignment explanation
Indices: 102681272--102681305 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102681262 GGAGATTGTT
* *
102681272 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
102681288 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
102681304 AA
1 AA
102681306 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:102682569 original size:24 final size:26
Alignment explanation
Indices: 102682542--102682590 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
102682532 TATATTTTTT
*
102682542 TAAATTTTA-ATTTTTTA-AAATATA
1 TAAATTTTAGAATTTTTATAAATATA
102682566 TAAATTTTAGAATTTTTATAAATAT
1 TAAATTTTAGAATTTTTATAAATAT
102682591 TTTGAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.41
25 7 0.32
26 6 0.27
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
TAAATTTTAGAATTTTTATAAATATA
Found at i:102682601 original size:18 final size:19
Alignment explanation
Indices: 102682564--102682600 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
102682554 TTTTAAAATA
*
102682564 TATAAAT-TTTAGAATTTT
1 TATAAATATTTTGAATTTT
102682582 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
102682601 AAAAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:102682606 original size:18 final size:21
Alignment explanation
Indices: 102682569--102682612 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
102682559 AAATATATAA
*
102682569 ATTTTAGAATTTTTATAAA-T
1 ATTTTAGAATTTTTAAAAATT
102682589 ATTTT-GAA-TTTTAAAAATT
1 ATTTTAGAATTTTTAAAAATT
102682608 ATTTT
1 ATTTT
102682613 TTAATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 8 0.36
19 9 0.41
20 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
ATTTTAGAATTTTTAAAAATT
Found at i:102682634 original size:11 final size:12
Alignment explanation
Indices: 102682603--102682634 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
102682593 TGAATTTTAA
102682603 AAATTATTTTTT
1 AAATTATTTTTT
102682615 -AATTATTTTTT
1 AAATTATTTTTT
102682626 AAATT-TTTT
1 AAATTATTTT
102682635 GTTGAGAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
AAATTATTTTTT
Found at i:102684125 original size:3 final size:3
Alignment explanation
Indices: 102684117--102684146 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
102684107 TACATTCTGA
102684117 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
102684147 GTTATTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:102691198 original size:15 final size:15
Alignment explanation
Indices: 102691178--102691229 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
102691168 ACTACAAAAA
102691178 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
102691193 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
102691212 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
102691227 ATT
1 ATT
102691230 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:102691293 original size:16 final size:16
Alignment explanation
Indices: 102691262--102691298 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
102691252 ATGTGAATAA
102691262 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
102691278 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
102691294 TATTA
1 TATTA
102691299 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:102696780 original size:15 final size:15
Alignment explanation
Indices: 102696760--102696789 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
102696750 TTGTTTGGTT
102696760 TATATACAGGGAATA
1 TATATACAGGGAATA
102696775 TATATACAGGGAATA
1 TATATACAGGGAATA
102696790 GGAATTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (15 bp):
TATATACAGGGAATA
Found at i:102711300 original size:89 final size:90
Alignment explanation
Indices: 102711207--102711388 Score: 232
Period size: 89 Copynumber: 2.1 Consensus size: 90
102711197 CAATTTTTTT
*
102711207 AAAAAAAAAGCAATTAAA-CCT-CTTTTT-TTTTTACTCAATTGAACT-CTTGAACTTTCAAAAT
1 AAAAAAAAAGCAATTAAACCCTGCTTTTTATTTTCACTCAA-TG-ACTACTTGAACTTTCAAAAT
* * *
102711268 GTATAAAAAAGACCCTTAAACTTCTTC
64 GCATAAAAAAGACCCTCAAAATTCTTC
**
102711295 --AAAAAAAGCAATTAAATCCCTGCTTTTTATTTTCACTCAATGGGTACTTGAACTTTCAAAATG
1 AAAAAAAAAGCAATTAAA-CCCTGCTTTTTATTTTCACTCAATGACTACTTGAACTTTCAAAATG
*
102711358 CATAAAAAAGACCCTCAAAATTTTTC
65 CATAAAAAAGACCCTCAAAATTCTTC
102711384 AAAAA
1 AAAAA
102711389 TGCAATTAAG
Statistics
Matches: 80, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
86 16 0.20
88 4 0.05
89 47 0.59
90 10 0.12
91 3 0.04
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (90 bp):
AAAAAAAAAGCAATTAAACCCTGCTTTTTATTTTCACTCAATGACTACTTGAACTTTCAAAATGC
ATAAAAAAGACCCTCAAAATTCTTC
Found at i:102711433 original size:18 final size:18
Alignment explanation
Indices: 102711410--102711461 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
102711400 CCATGCTTTT
102711410 ATTATAAATTAGAAAAAA
1 ATTATAAATTAGAAAAAA
* *
102711428 ATTATAAAAATA-AAAATA
1 ATTAT-AAATTAGAAAAAA
*
102711446 A-TATATATTAGAAAAA
1 ATTATAAATTAGAAAAA
102711462 TTATTAAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
16 4 0.15
17 7 0.26
18 11 0.41
19 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (18 bp):
ATTATAAATTAGAAAAAA
Found at i:102711487 original size:18 final size:19
Alignment explanation
Indices: 102711439--102711487 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
102711429 TTATAAAAAT
*
102711439 AAAAATA-ATATATATTAG
1 AAAAATATATAAATATTAG
*
102711457 AAAAAT-TATTAAATTTTA-
1 AAAAATATA-TAAATATTAG
102711475 AAAAATATATAAA
1 AAAAATATATAAA
102711488 AAATTAGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 17 0.65
19 9 0.35
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAATATATAAATATTAG
Found at i:102711508 original size:19 final size:21
Alignment explanation
Indices: 102711480--102711530 Score: 72
Period size: 18 Copynumber: 2.6 Consensus size: 21
102711470 TTTTAAAAAA
102711480 TATATAAAAAATTAG-AATTT
1 TATATAAAAAATTAGAAATTT
102711500 TAT-T-AAAAATTAGAAATTT
1 TATATAAAAAATTAGAAATTT
*
102711519 TTTATAAAAAAT
1 TATATAAAAAAT
102711531 CTTAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.33
19 8 0.30
20 4 0.15
21 6 0.22
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (21 bp):
TATATAAAAAATTAGAAATTT
Found at i:102711796 original size:20 final size:20
Alignment explanation
Indices: 102711771--102711853 Score: 61
Period size: 20 Copynumber: 4.3 Consensus size: 20
102711761 TTCTTACGAC
102711771 TTTATAAAATTTTATAATTT
1 TTTATAAAATTTTATAATTT
*
102711791 TTTAT---A-TTTAT-ATAT
1 TTTATAAAATTTTATAATTT
*
102711806 ATTATAAAAATTTT-TAATGATT
1 TTTAT-AAAATTTTATAAT--TT
* *
102711828 TTTATTAAATTTTACAATTT
1 TTTATAAAATTTTATAATTT
102711848 TTTATA
1 TTTATA
102711854 TTTTTTAATT
Statistics
Matches: 47, Mismatches: 7, Indels: 18
0.65 0.10 0.25
Matches are distributed among these distances:
15 7 0.15
16 5 0.11
17 1 0.02
19 2 0.04
20 17 0.36
21 7 0.15
22 8 0.17
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (20 bp):
TTTATAAAATTTTATAATTT
Found at i:102717026 original size:44 final size:44
Alignment explanation
Indices: 102716978--102718016 Score: 311
Period size: 44 Copynumber: 23.6 Consensus size: 44
102716968 CATTTCAATT
* * * *
102716978 TGCTCCACTATTGCTTAGGGAGATATGATCTGTAATTTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * *
102717022 TGCTCCACTGCTGCTTAAGGAGATAAGATCTGCACTCTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * **** * **
102717066 TGTTCCACTACTACTTAGGGAGATAGGGT-TGGTGGCTTGAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
** * * * *
102717109 TGCTCCA-TTGTCACTATATGGAGATAAGAT-TCGTC-GTCTTC-GATC
1 TGCTCCACTACT-GCT-TAGGGAGATAAGATCT-G-CAATCTTCAG-CC
* *
102717154 TGCTCCGCTACTACTTAGGGAGATAAGATCTGCAATCTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * *** ** **
102717198 TGTTCCACTACTGCTTAGGGAGATAAG-GCTGCTGGCTGAAAAC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * ** * * * * *
102717241 TGCTCCATTGCCACTACATGGAGATAATAT-T-CACCGTCTTC-GATC
1 TGCTCCACTACTGCT-TAGGGAGATAAGATCTGCA--ATCTTCAG-CC
* * *
102717286 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATATTTAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* **** * ***
102717330 TGTTCCACTACTGCTTAGGGAGATAAGA-CTGGTGGCTTGAATT
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
** * * * *
102717373 TGCTCCA-TTTTCGCTACATGGAGATACGAT-T-C-ATCGTCCTC-GATC
1 TGCTCCACTACT-GCT-TAGGGAGATAAGATCTGCAATC-T--TCAG-CC
102717418 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * **** * **
102717462 TGTTCAACTACTGCTTAGAGAGATAAG-GCTGGTGGCTTGAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * * * *
102717505 TGCTCCATTTCTGCTACATGGAGATACGAT-T-CATCGTCTTC-GATC
1 TGCTCCACTACTGCT-TAGGGAGATAAGATCTGCA--ATCTTCAG-CC
* * *
102717550 TGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* ** **** * ***
102717594 TGTTCCACTACTGCTTAGGGAGAT-AGGGCTGGTGGCTTGAATT
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * * * *
102717637 TGCTCCATTGCCGCTACATGGAGATAAGATTTGTC-ATCTTC-GATC
1 TGCTCCACTACTGCT-TAGGGAGATAAGATCTG-CAATCTTCAG-CC
* *
102717682 TGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTTAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * *** * **
102717726 TGTTCCGCTACTGCTTAGGGAGATAAG-GCTGCTGGCTTGAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * * * * *
102717769 TGCTCCATTGCCGCTACATGGAGATAAGGTTTGTC-ATCTTC-GATC
1 TGCTCCACTACTGCT-TAGGGAGATAAGATCTG-CAATCTTCAG-CC
*
102717814 TGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * *** * **
102717858 TGTTTCGCTACTGCTTAGGGAGATAAG-GCTGCTGGCTTGAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
** * * * * *
102717901 TGCTCCA-TTTTCGCTACATGGAGATACGAT-T-CATCGTCTTC-GATC
1 TGCTCCACTACT-GCT-TAGGGAGATAAGATCTGCA--ATCTTCAG-CC
** *
102717946 TGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* *
102717990 TGTTCCACTACTGATTAGGGAGATAAG
1 TGCTCCACTACTGCTTAGGGAGATAAG
102718017 GCTGGTGGCT
Statistics
Matches: 697, Mismatches: 239, Indels: 118
0.66 0.23 0.11
Matches are distributed among these distances:
42 7 0.01
43 127 0.18
44 421 0.60
45 126 0.18
46 13 0.02
47 3 0.00
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.31
Consensus pattern (44 bp):
TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
Found at i:102717193 original size:132 final size:132
Alignment explanation
Indices: 102717021--102718150 Score: 1620
Period size: 132 Copynumber: 8.6 Consensus size: 132
102717011 AATTTTCAGC
* * * *
102717021 CTGCTCCACTGCTGCTTAAGGAGATAAGATCTGCACTCTTCAGCCTGTTCCACTACTACTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * * * *
102717086 AGATAGGGTTGGTGGCTTGAATCTGCTCCATTGTCACTATATGGAGATAAGATTCGTCGTCTTCG
66 AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTCGCTACATGGAGATAAGATTCATCGTCTTCG
102717151 AT
131 AT
* *
102717153 CTGCTCCGCTACTACTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * * * * *
102717218 AGATAAGGCTGCTGGC-TGAAAACTGCTCCATTGCCACTACATGGAGATAATATTCACCGTCTTC
66 AGATAAGGCTGGTGGCTTG-AATCTGCTCCATTGTCGCTACATGGAGATAAGATTCATCGTCTTC
102717282 GAT
130 GAT
* * *
102717285 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATATTTAGCCTGTTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * * * *
102717350 AGATAAGACTGGTGGCTTGAATTTGCTCCATTTTCGCTACATGGAGATACGATTCATCGTCCTCG
66 AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTCGCTACATGGAGATAAGATTCATCGTCTTCG
102717415 AT
131 AT
* *
102717417 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCAACTACTGCTTAGAG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
*
102717482 AGATAAGGCTGGTGGCTTGAATCTGCTCCATT-TCTGCTACATGGAGATACGATTCATCGTCTTC
66 AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTC-GCTACATGGAGATAAGATTCATCGTCTTC
102717546 GAT
130 GAT
* * *
102717549 CTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * * ** *
102717614 AGATAGGGCTGGTGGCTTGAATTTGCTCCATTGCCGCTACATGGAGATAAGATTTGTCATCTTCG
66 AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTCGCTACATGGAGATAAGATTCATCGTCTTCG
102717679 AT
131 AT
* * *
102717681 CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTTAGCCTGTTCCGCTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * * ** *
102717746 AGATAAGGCTGCTGGCTTGAATCTGCTCCATTGCCGCTACATGGAGATAAGGTTTGTCATCTTCG
66 AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTCGCTACATGGAGATAAGATTCATCGTCTTCG
102717811 AT
131 AT
* * *
102717813 CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTTCGCTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * *
102717878 AGATAAGGCTGCTGGCTTGAATCTGCTCCATTTTCGCTACATGGAGATACGATTCATCGTCTTCG
66 AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTCGCTACATGGAGATAAGATTCATCGTCTTCG
102717943 AT
131 AT
** * *
102717945 CTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTCCACTACTGATTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * *
102718010 AGATAAGGCTGGTGGCTTGAATCTGCTCTATT-TCCACTATATGGAGATACA-ATTCATCGTCTT
66 AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGT-CGCTACATGGAGATA-AGATTCATCGTCTT
*
102718073 TGAT
129 CGAT
* * * *
102718077 CTACTCCACTACTGCTTAGGGAGATAATATCTGCAATCTTTAGCCTGTTCCACTACTGCTTAGAG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
102718142 AGATAAGGC
66 AGATAAGGC
102718151 AAGTTGAAAT
Statistics
Matches: 901, Mismatches: 91, Indels: 12
0.90 0.09 0.01
Matches are distributed among these distances:
131 5 0.01
132 893 0.99
133 3 0.00
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (132 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTCGCTACATGGAGATAAGATTCATCGTCTTCG
AT
Found at i:102750686 original size:22 final size:22
Alignment explanation
Indices: 102750656--102750701 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
102750646 AAATTATTCA
*
102750656 ATCCTGCTCCCTATGTTGCAAC
1 ATCCAGCTCCCTATGTTGCAAC
* *
102750678 ATCCAGCTCTCTGTGTTGCAAC
1 ATCCAGCTCCCTATGTTGCAAC
102750700 AT
1 AT
102750702 AGAGATTGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.33, G:0.15, T:0.33
Consensus pattern (22 bp):
ATCCAGCTCCCTATGTTGCAAC
Found at i:102755674 original size:628 final size:628
Alignment explanation
Indices: 102754478--102755731 Score: 2184
Period size: 628 Copynumber: 2.0 Consensus size: 628
102754468 CACTGAGAAA
* * * *
102754478 CAAAGCTAAACAGTCGTTGAACTCGTTACCATGAGGGTCTATCACTACTTGGGAACAAATGACTG
1 CAAAGCTAAACAATCGTTGAACTAGTTACCACGAGGGTCTATCACTACTTGGGAACAAATGACCG
*
102754543 AAAATTTTTTACTAAAATACCTTTCGCCAGCTAAAACGGCAAAATAACGCAATGATATCTCTTCT
66 AAAATTTTTTACTAAAATACCTTTCGCCAGCTAAAACAGCAAAATAACGCAATGATATCTCTTCT
*
102754608 TTTGTGCAAATGGATTTAGAAACACTTTACGATGCATGGGAGAGATACAAGGACATACTGAGAAG
131 TTTGTGCAAATGGATTTAGAAACACTTTACGATGCATAGGAGAGATACAAGGACATACTGAGAAG
*
102754673 GTGCCCTCACCATGGGTTACCGCTTTGGCTTCAAATACAAACATTCCACAATGGTCTGAATCCCT
196 GTGCCCTCACCATGGGTTACCACTTTGGCTTCAAATACAAACATTCCACAATGGTCTGAATCCCT
* * *
102754738 CGACTCGGCAAATGGTTGACGCGGCTGTTGGCGGAACCATCAACAATAAAACACCGGAAGATGCC
261 CGACTCGGCAAATGGTTGACGCGGCTGCTAGCGGAACCATCAACAATAAAACACCGAAAGATGCC
102754803 TATGAGTTTATAGAGGAGATGTCACTGAATAACTATCAGTGGCAAGTTATAAGGACAAAGCCAAC
326 TATGAGTTTATAGAGGAGATGTCACTGAATAACTATCAGTGGCAAGTTATAAGGACAAAGCCAAC
* ***
102754868 GAAAACAGTCGGTGTTTATAACGTCGACTCAGTTACTATACTGTCAAATCAGGTAGAACTTCCCA
391 AAAAACAGTCAACGTTTATAACGTCGACTCAGTTACTATACTGTCAAATCAGGTAGAACTTCCCA
* *
102754933 ATAAAAAGATTAATGGTTTACTTGGTTCTACGCAGGTACATCCAGTAATGAGGTGTGACGCGAGT
456 ATAAAAAGATCAATGGTTTACTTGGTTCTACGCAGGTACATCCAATAATGAGGTGTGACGCGAGT
* *
102754998 GGAAGAGGTGTGCATACATAATATCAATCCTTCAATCCTACAACCGAAGAGGAACAAGTCAACTA
521 GGAAGAGGTGTGCATACAGAATATCAATCCTTCAATCCCACAACCGAAGAGGAACAAGTCAACTA
102755063 TATGGGTAACAATAACTTTAGATCTCAAAATAACCCATACAAG
586 TATGGGTAACAATAACTTTAGATCTCAAAATAACCCATACAAG
*
102755106 CAAAGCTAAACAATGGTTGAACTAGTTACCACGAGGGTCTATCACTACTTGGGAACAAATGACCG
1 CAAAGCTAAACAATCGTTGAACTAGTTACCACGAGGGTCTATCACTACTTGGGAACAAATGACCG
* * *
102755171 AAAATTTTTTACTAAAATACTTTTCGCCAGCTAAAACAGCTAAATTACGCAATGATATCTCTTCT
66 AAAATTTTTTACTAAAATACCTTTCGCCAGCTAAAACAGCAAAATAACGCAATGATATCTCTTCT
*
102755236 TTTGTGCAAATGGATTTAGAAACACTTTACGATGCATAGGAGAGATACAAGGACTTACTGAGAAG
131 TTTGTGCAAATGGATTTAGAAACACTTTACGATGCATAGGAGAGATACAAGGACATACTGAGAAG
*
102755301 GTGCCCTCACCATGGGTTACCACTTTGGCTTCAAATACAAACATTCCACAATGGTTTGAATCCCT
196 GTGCCCTCACCATGGGTTACCACTTTGGCTTCAAATACAAACATTCCACAATGGTCTGAATCCCT
* **
102755366 CGACTCGGCAAATGGTTGACGTGGCTGCTAGCGGAACCATCAACAATAAAACATTGAAAGATGCC
261 CGACTCGGCAAATGGTTGACGCGGCTGCTAGCGGAACCATCAACAATAAAACACCGAAAGATGCC
*
102755431 TATGAGTTTATAGAGGAGATGTCACTGAATAACTATCAGTGGCAAGTTATGAGGACAAAGCCAAC
326 TATGAGTTTATAGAGGAGATGTCACTGAATAACTATCAGTGGCAAGTTATAAGGACAAAGCCAAC
* * ** *
102755496 AAAAATAGTCAACGTTTATAACGTCGACTTAGTTACTATGTTGTCAAATCAGGTAGAACTTTCCA
391 AAAAACAGTCAACGTTTATAACGTCGACTCAGTTACTATACTGTCAAATCAGGTAGAACTTCCCA
* *
102755561 ATAAAAAGATCGATGGTTTACTTGGTTCTACGCAGGTACATCCAATAATGAGGTGTGACGTGAGT
456 ATAAAAAGATCAATGGTTTACTTGGTTCTACGCAGGTACATCCAATAATGAGGTGTGACGCGAGT
*
102755626 GGAGGAGGTGTGCATACAGAATATCAATCCTTCAATCCCACAACCGAAGAGGAACAAGTCAACTA
521 GGAAGAGGTGTGCATACAGAATATCAATCCTTCAATCCCACAACCGAAGAGGAACAAGTCAACTA
102755691 TATGGGTAACAATAACTTTAGATCTCAAAATAACCCATACA
586 TATGGGTAACAATAACTTTAGATCTCAAAATAACCCATACA
102755732 GTAATACTTA
Statistics
Matches: 590, Mismatches: 36, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
628 590 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (628 bp):
CAAAGCTAAACAATCGTTGAACTAGTTACCACGAGGGTCTATCACTACTTGGGAACAAATGACCG
AAAATTTTTTACTAAAATACCTTTCGCCAGCTAAAACAGCAAAATAACGCAATGATATCTCTTCT
TTTGTGCAAATGGATTTAGAAACACTTTACGATGCATAGGAGAGATACAAGGACATACTGAGAAG
GTGCCCTCACCATGGGTTACCACTTTGGCTTCAAATACAAACATTCCACAATGGTCTGAATCCCT
CGACTCGGCAAATGGTTGACGCGGCTGCTAGCGGAACCATCAACAATAAAACACCGAAAGATGCC
TATGAGTTTATAGAGGAGATGTCACTGAATAACTATCAGTGGCAAGTTATAAGGACAAAGCCAAC
AAAAACAGTCAACGTTTATAACGTCGACTCAGTTACTATACTGTCAAATCAGGTAGAACTTCCCA
ATAAAAAGATCAATGGTTTACTTGGTTCTACGCAGGTACATCCAATAATGAGGTGTGACGCGAGT
GGAAGAGGTGTGCATACAGAATATCAATCCTTCAATCCCACAACCGAAGAGGAACAAGTCAACTA
TATGGGTAACAATAACTTTAGATCTCAAAATAACCCATACAAG
Found at i:102766920 original size:5 final size:5
Alignment explanation
Indices: 102766906--102766949 Score: 81
Period size: 5 Copynumber: 9.0 Consensus size: 5
102766896 AAGTATTAAG
102766906 TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
102766950 AATAAAACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
4 4 0.10
5 35 0.90
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:102767777 original size:16 final size:17
Alignment explanation
Indices: 102767751--102767786 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
102767741 TATTATGAAT
*
102767751 ATATATGTGTAAATGTG
1 ATATATGTGTAAATATG
102767768 ATAT-TGTGTAAATATG
1 ATATATGTGTAAATATG
102767784 ATA
1 ATA
102767787 ATTGGAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (17 bp):
ATATATGTGTAAATATG
Found at i:102767914 original size:27 final size:25
Alignment explanation
Indices: 102767890--102767946 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
102767880 AACCTTAGCA
102767890 CGCTCTCTGATTATTAGCACATTAG
1 CGCTCTCTGATTATTAGCACATTAG
* *
102767915 TGCTCTCTGATTATTGGCACATTAG
1 CGCTCTCTGATTATTAGCACATTAG
*
102767940 TGCTCTC
1 CGCTCTC
102767947 CATTTAGCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.39
Consensus pattern (25 bp):
CGCTCTCTGATTATTAGCACATTAG
Found at i:102767919 original size:25 final size:24
Alignment explanation
Indices: 102767891--102767992 Score: 115
Period size: 22 Copynumber: 4.3 Consensus size: 24
102767881 ACCTTAGCAC
102767891 GCTCTCTGATTATTAGCACATTAGT
1 GCTCTCTGA-TATTAGCACATTAGT
*
102767916 GCTCTCTGATTATTGGCACATTAGT
1 GCTCTCTGA-TATTAGCACATTAGT
*
102767941 GCTCTC-CAT-TTAGCACATTCA-T
1 GCTCTCTGATATTAGCACATT-AGT
*
102767963 GCTCTCTG-TA-TAGCACTTTAGT
1 GCTCTCTGATATTAGCACATTAGT
102767985 GCTCTCTG
1 GCTCTCTG
102767993 TTTAATAGTG
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.01
22 34 0.50
23 2 0.03
24 1 0.01
25 30 0.44
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.39
Consensus pattern (24 bp):
GCTCTCTGATATTAGCACATTAGT
Found at i:102767957 original size:47 final size:44
Alignment explanation
Indices: 102767903--102767990 Score: 115
Period size: 47 Copynumber: 1.9 Consensus size: 44
102767893 TCTCTGATTA
*
102767903 TTAGCACATT-AGTGCTCTCTGATTATTGGCACATTAGTGCTCTCCAT
1 TTAGCACATTCA-TGCTCTCTG--TA-TAGCACATTAGTGCTCTCCAT
*
102767950 TTAGCACATTCATGCTCTCTGTATAGCACTTTAGTGCTCTC
1 TTAGCACATTCATGCTCTCTGTATAGCACATTAGTGCTCTC
102767991 TGTTTAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
44 16 0.42
45 2 0.05
47 19 0.50
48 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (44 bp):
TTAGCACATTCATGCTCTCTGTATAGCACATTAGTGCTCTCCAT
Found at i:102770905 original size:27 final size:27
Alignment explanation
Indices: 102770857--102771015 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
102770847 GCGAGGCTGC
* *
102770857 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
102770884 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
102770910 CAGATATATGTGGCAAAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
102770937 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
102770964 CAGATATATGTGGCAGAGCCACCAAAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
102770991 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
102771016 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.09
27 99 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:102771016 original size:54 final size:54
Alignment explanation
Indices: 102770857--102771018 Score: 238
Period size: 54 Copynumber: 3.0 Consensus size: 54
102770847 GCGAGGCTGC
* * * * *
102770857 CAGATAT-TGTGACGAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
102770910 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
* *
102770964 CAGATATATGTGGCAGAGCCACCAAATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
102771018 C
1 C
102771019 GCTTCCTCCA
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 12 0.12
54 88 0.88
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:102772642 original size:26 final size:26
Alignment explanation
Indices: 102772611--102772718 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
102772601 TGAAATGCCC
*
102772611 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
102772637 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
102772663 ATCATGGAATATTTATCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
102772689 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
102772715 ATCA
1 ATCA
102772719 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:102778363 original size:119 final size:120
Alignment explanation
Indices: 102778187--102778409 Score: 310
Period size: 119 Copynumber: 1.9 Consensus size: 120
102778177 TACTCGTTCA
* *
102778187 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
102778252 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * *
102778307 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
102778369 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
102778410 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 4 0.04
119 67 0.74
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:102778409 original size:40 final size:40
Alignment explanation
Indices: 102778166--102778409 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
102778156 CGGAATTTAA
** *
102778166 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
102778206 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
102778246 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
102778286 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
102778325 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
102778365 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
102778405 CCGGA
1 CCGGA
102778410 CATCATTCAA
Statistics
Matches: 179, Mismatches: 18, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 133 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:102781552 original size:38 final size:38
Alignment explanation
Indices: 102781470--102781626 Score: 163
Period size: 38 Copynumber: 4.0 Consensus size: 38
102781460 AAACCCAAAC
* * * * * *
102781470 ATAACACCAGCACGAAGCCTACAGGACTTTAAACTCAGAT
1 ATAATACCAGCACTAAGCCTGCGGGA-TTT-AACCCGGAT
*
102781510 ATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
*
102781548 ATAATACCAGCACTAAGCCTGCGAGATTTAACCCGGAT
1 ATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
** *
102781586 ATAATTTCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCACTA-AGCCTGCGGG-ATTTAA-CCCGGAT
102781626 A
1 A
102781627 CAATCTCAGC
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
37 2 0.02
38 62 0.61
39 8 0.08
40 29 0.29
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (38 bp):
ATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
Found at i:102785169 original size:28 final size:28
Alignment explanation
Indices: 102785133--102785192 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
102785123 ATAACATTTT
* *
102785133 ATTAAAAAAATAATCTTTAATAAATAGA
1 ATTAAAAAAATAATCCTAAATAAATAGA
*
102785161 ATTATAAAAATAATCCTAAATAAATAGA
1 ATTAAAAAAATAATCCTAAATAAATAGA
102785189 ATTA
1 ATTA
102785193 CATTTGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (28 bp):
ATTAAAAAAATAATCCTAAATAAATAGA
Found at i:102786946 original size:47 final size:47
Alignment explanation
Indices: 102786877--102786973 Score: 169
Period size: 47 Copynumber: 2.1 Consensus size: 47
102786867 TTCACACAAC
*
102786877 ATGTTCTGTCAAAAGCATGCTATTTAAG-TTCATCTTTGCTTAGTTTA
1 ATGTTCTGTCAAAAGCATGCTATTT-AGCTTCATCTTTGCTCAGTTTA
102786924 ATGTTCTGTCAAAAGCATGCTATTTAGCTTCATCTTTGCTCAGTTTA
1 ATGTTCTGTCAAAAGCATGCTATTTAGCTTCATCTTTGCTCAGTTTA
102786971 ATG
1 ATG
102786974 GAGGTTTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 2 0.04
47 46 0.96
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.43
Consensus pattern (47 bp):
ATGTTCTGTCAAAAGCATGCTATTTAGCTTCATCTTTGCTCAGTTTA
Found at i:102790025 original size:23 final size:22
Alignment explanation
Indices: 102789999--102790042 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
102789989 AATTATTTTA
102789999 ATTTAATGATATTTTTTGAAATT
1 ATTTAATGATATTTTTT-AAATT
* **
102790022 ATTTTATTTTATTTTTTAAAT
1 ATTTAATGATATTTTTTAAAT
102790043 GAAGATAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (22 bp):
ATTTAATGATATTTTTTAAATT
Found at i:102790079 original size:19 final size:19
Alignment explanation
Indices: 102790039--102790079 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
102790029 TTTATTTTTT
***
102790039 AAATGAAGATAATTATTTA
1 AAATGAAGATAATTAAACA
102790058 AAATGAAGATAATTAAACA
1 AAATGAAGATAATTAAACA
102790077 AAA
1 AAA
102790080 CCATTTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.61, C:0.02, G:0.10, T:0.27
Consensus pattern (19 bp):
AAATGAAGATAATTAAACA
Found at i:102790346 original size:8 final size:8
Alignment explanation
Indices: 102790328--102790357 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
102790318 CATTTCTTAA
102790328 TATTT-TC
1 TATTTCTC
102790335 TATTTCTC
1 TATTTCTC
102790343 TATTTCTC
1 TATTTCTC
102790351 TATTTCT
1 TATTTCT
102790358 ATTCCTTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.23
8 17 0.77
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (8 bp):
TATTTCTC
Found at i:102790422 original size:17 final size:17
Alignment explanation
Indices: 102790400--102790432 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
102790390 ATTCATTTAT
102790400 GGTTTCAACAAGCTAGC
1 GGTTTCAACAAGCTAGC
*
102790417 GGTTTCAACGAGCTAG
1 GGTTTCAACAAGCTAG
102790433 TAGACGGACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (17 bp):
GGTTTCAACAAGCTAGC
Found at i:102797013 original size:18 final size:19
Alignment explanation
Indices: 102796980--102797015 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
102796970 CAAATGAACT
*
102796980 ATTTCTCATTTTCATTTTC
1 ATTTCTCATTTCCATTTTC
102796999 ATTTC-CATTTCCATTTT
1 ATTTCTCATTTCCATTTT
102797016 TGAGAAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTCTCATTTCCATTTTC
Found at i:102800408 original size:41 final size:41
Alignment explanation
Indices: 102800351--102800445 Score: 190
Period size: 41 Copynumber: 2.3 Consensus size: 41
102800341 ACGGCCTGGC
102800351 ACACGCCCGTGTCCCTGGCCCGTGTCCTTTACATGGCCATG
1 ACACGCCCGTGTCCCTGGCCCGTGTCCTTTACATGGCCATG
102800392 ACACGCCCGTGTCCCTGGCCCGTGTCCTTTACATGGCCATG
1 ACACGCCCGTGTCCCTGGCCCGTGTCCTTTACATGGCCATG
102800433 ACACGCCCGTGTC
1 ACACGCCCGTGTC
102800446 TTAGCCCGTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.13, C:0.40, G:0.24, T:0.23
Consensus pattern (41 bp):
ACACGCCCGTGTCCCTGGCCCGTGTCCTTTACATGGCCATG
Found at i:102801549 original size:46 final size:44
Alignment explanation
Indices: 102801428--102801550 Score: 131
Period size: 46 Copynumber: 2.7 Consensus size: 44
102801418 CATTGCCATA
* * * *
102801428 TCCCAGACATAGTTTTACACTGACACATCTCGTAGCCGATGCATG
1 TCCCAGACAT-GTCTTACACTGACTCGTCTCGTAGCCGAAGCATG
* *
102801473 TCCCAGACATGTCTTACATTGGCTTACGTCTCG-AGGCCGAAGCATG
1 TCCCAGACATGTCTTACACTGAC-T-CGTCTCGTA-GCCGAAGCATG
102801519 TCCCAGACATGTCTTACACTAGAACTCGTCTC
1 TCCCAGACATGTCTTACACT-G-ACTCGTCTC
102801551 AATATCGATG
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
44 10 0.15
45 11 0.17
46 41 0.63
47 2 0.03
48 1 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (44 bp):
TCCCAGACATGTCTTACACTGACTCGTCTCGTAGCCGAAGCATG
Found at i:102804597 original size:94 final size:94
Alignment explanation
Indices: 102804435--102804810 Score: 662
Period size: 94 Copynumber: 4.0 Consensus size: 94
102804425 AATGTGACCG
* * * *
102804435 TATATGCTATTTGAATTAAGTAAGTTTCCATATTATAATGAGTTAACATTGGCACTATGTGGGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
102804500 GAATTAAATGTCACTTTGTGTGTAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
102804529 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGTG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
102804594 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
102804623 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
102804688 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
102804717 TATATGCTATTTGAATTAAGTAAATTACCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
102804782 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
102804811 GAATGTCGAT
Statistics
Matches: 271, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 271 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:102804871 original size:24 final size:24
Alignment explanation
Indices: 102804839--102804902 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
102804829 GAAAATTTCA
* *
102804839 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
102804863 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
102804887 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
102804903 ATTTGGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:102807792 original size:16 final size:18
Alignment explanation
Indices: 102807765--102807798 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
102807755 TTAGAATTGG
102807765 ATTGAGAAAATT-ATTTA
1 ATTGAGAAAATTAATTTA
102807782 ATTGA-AAAATTAATTTA
1 ATTGAGAAAATTAATTTA
102807799 GTTAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
ATTGAGAAAATTAATTTA
Found at i:102807823 original size:8 final size:9
Alignment explanation
Indices: 102807789--102807822 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
102807779 TTAATTGAAA
102807789 AATTAATTT
1 AATTAATTT
*
102807798 AGTTAATTT
1 AATTAATTT
102807807 AATTAA-TT
1 AATTAATTT
102807815 AATTAATT
1 AATTAATT
102807823 ATATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (9 bp):
AATTAATTT
Found at i:102817637 original size:18 final size:18
Alignment explanation
Indices: 102817614--102817658 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
102817604 TTTAGTATAA
102817614 TGGGCCCACATGGTCGTG
1 TGGGCCCACATGGTCGTG
102817632 TGGGCCCACATGGTCGTG
1 TGGGCCCACATGGTCGTG
102817650 TGGGCCCAC
1 TGGGCCCAC
102817659 GCGCCAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.11, C:0.31, G:0.38, T:0.20
Consensus pattern (18 bp):
TGGGCCCACATGGTCGTG
Found at i:102842274 original size:16 final size:16
Alignment explanation
Indices: 102842253--102842288 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
102842243 TTTGGTTCGC
*
102842253 TGTATTGGATTAGAGG
1 TGTATTGGAATAGAGG
102842269 TGTATTGGAATAGAGG
1 TGTATTGGAATAGAGG
102842285 TGTA
1 TGTA
102842289 ATAGCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGAATAGAGG
Found at i:102842586 original size:54 final size:54
Alignment explanation
Indices: 102842528--102842760 Score: 236
Period size: 54 Copynumber: 4.1 Consensus size: 54
102842518 ATTAAAATAT
102842528 ATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATC
* * * * * * *
102842582 ATAATATATGATACTATAAAATATAAATTAA-CATAATTATTATTAAAT-ATATTATAATTAAAA
1 ATAAT-T-T-A-A-TA-AAATTCTTAA-TAATC--AA-TATTCTTATATGA-ATT-T-ACTCAAA
*
102842645 TAT
53 T-C
102842648 ATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATC
* *
102842702 ATAATTTAATAAAATTCTTAATAATTAATATTTTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATC
102842756 ATAAT
1 ATAAT
102842761 ATATGATACT
Statistics
Matches: 145, Mismatches: 18, Indels: 32
0.74 0.09 0.16
Matches are distributed among these distances:
54 62 0.43
55 7 0.05
56 2 0.01
57 13 0.09
58 4 0.03
59 5 0.03
60 16 0.11
61 5 0.03
62 4 0.03
63 13 0.09
64 2 0.01
65 7 0.05
66 5 0.03
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.43
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATC
Found at i:102842656 original size:14 final size:15
Alignment explanation
Indices: 102842607--102842658 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
102842597 ATAAAATATA
102842607 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
102842622 TATTAAATATATTAT
1 AATTAAATATATTAT
102842637 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
102842650 AATTTAATA
1 AATTAAATA
102842659 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:102842704 original size:120 final size:120
Alignment explanation
Indices: 102842491--102842706 Score: 423
Period size: 120 Copynumber: 1.8 Consensus size: 120
102842481 ATCATATTTA
102842491 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
102842556 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
102842611 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
102842676 TATTCTTATATGAATTTACTCAAATCATAAT
66 TATTCTTATATGAATTTACTCAAATCATAAT
102842707 TTAATAAAAT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 95 1.00
ACGTcount: A:0.50, C:0.07, G:0.01, T:0.42
Consensus pattern (120 bp):
AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:102846590 original size:16 final size:17
Alignment explanation
Indices: 102846571--102846612 Score: 63
Period size: 15 Copynumber: 2.6 Consensus size: 17
102846561 ATTTCAAAAT
102846571 TTAAAAAATATA-TAAA
1 TTAAAAAATATACTAAA
102846587 TT-AAAAATA-ACTAAA
1 TTAAAAAATATACTAAA
102846602 TTAAAAAATAT
1 TTAAAAAATAT
102846613 GGACTAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 1 0.04
15 13 0.57
16 9 0.39
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
TTAAAAAATATACTAAA
Found at i:102846594 original size:32 final size:30
Alignment explanation
Indices: 102846553--102846612 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
102846543 GTTTTAGATA
**
102846553 AAATTAAAATTTCAAAATTTAAAAAATATAT
1 AAATTAAAATAACAAAA-TTAAAAAATATAT
*
102846584 AAATTAAAAATAACTAAATTAAAAAATAT
1 AAATT-AAAATAACAAAATTAAAAAATAT
102846613 GGACTAAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 16 0.64
32 9 0.36
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (30 bp):
AAATTAAAATAACAAAATTAAAAAATATAT
Found at i:102868814 original size:8 final size:8
Alignment explanation
Indices: 102868801--102868831 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
102868791 ACCGGCAAAA
102868801 GCCGAAAT
1 GCCGAAAT
102868809 GCCGAAAT
1 GCCGAAAT
*
102868817 GTCGAAAT
1 GCCGAAAT
102868825 GCCGAAA
1 GCCGAAA
102868832 AGCCAAAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.39, C:0.23, G:0.26, T:0.13
Consensus pattern (8 bp):
GCCGAAAT
Found at i:102869139 original size:29 final size:29
Alignment explanation
Indices: 102869063--102869139 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
102869053 TGATTGTGAC
* * * *
102869063 TGGGCCGAACGGGCCATATAGATGTGATT
1 TGGGCCTAATGGGCCATATACAGGTGATT
**
102869092 TGGGCCTAATGGGAAATATACAGGTGATT
1 TGGGCCTAATGGGCCATATACAGGTGATT
*
102869121 TGGGCCTAGTGGGCCATAT
1 TGGGCCTAATGGGCCATAT
102869140 GAATACGATT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.26
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATACAGGTGATT
Found at i:102872638 original size:5 final size:6
Alignment explanation
Indices: 102872624--102872657 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
102872614 CTAATTTCCC
102872624 TTTTCT TTTTCT TTTTCT TTTTCCT TCTTTCT TT
1 TTTTCT TTTTCT TTTTCT TTTT-CT T-TTTCT TT
102872658 CCCTGCTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 17 0.65
7 6 0.23
8 3 0.12
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:102872641 original size:12 final size:13
Alignment explanation
Indices: 102872618--102872657 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
102872608 AAAACCCTAA
*
102872618 TTTCCCTTTTCTT
1 TTTCCTTTTTCTT
102872631 TTT-CTTTTTCTT
1 TTTCCTTTTTCTT
102872643 TTTCCTTCTTTCTT
1 TTTCCTT-TTTCTT
102872657 T
1 T
102872658 CCCTGCTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 11 0.46
13 6 0.25
14 7 0.29
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTCCTTTTTCTT
Found at i:102872738 original size:15 final size:15
Alignment explanation
Indices: 102872718--102872746 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
102872708 TTTATTCTTT
102872718 TATTATATTATTAAC
1 TATTATATTATTAAC
102872733 TATTATATTATTAA
1 TATTATATTATTAA
102872747 TTTCTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTATATTATTAAC
Found at i:102873696 original size:19 final size:19
Alignment explanation
Indices: 102873674--102873712 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
102873664 CAACGACAGC
102873674 GTACGACAGCAACGGTGGT
1 GTACGACAGCAACGGTGGT
* * *
102873693 GTACGGCGGCAACGTTGGT
1 GTACGACAGCAACGGTGGT
102873712 G
1 G
102873713 CTTTGGCAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.21, G:0.41, T:0.18
Consensus pattern (19 bp):
GTACGACAGCAACGGTGGT
Found at i:102881246 original size:28 final size:28
Alignment explanation
Indices: 102881188--102881247 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
102881178 CATGCAGTAA
* * * * *
102881188 CAGTTTGGGCCTGAGCCCTATTCAGTAT
1 CAGTGTGGGCCTAAGCCCAATACAATAT
*
102881216 CAGTGTGGGCCTAAGCCCAATACAATTT
1 CAGTGTGGGCCTAAGCCCAATACAATAT
102881244 CAGT
1 CAGT
102881248 ATAGTGCAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (28 bp):
CAGTGTGGGCCTAAGCCCAATACAATAT
Found at i:102881430 original size:26 final size:27
Alignment explanation
Indices: 102881401--102881461 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
102881391 TGCCAGTAGC
* *
102881401 AGTAAGTGTGGCA-AGCCACCACTCAT
1 AGTAAATGTGACATAGCCACCACTCAT
* *
102881427 AGTAAATGTGACATAGTCACCAGTCAT
1 AGTAAATGTGACATAGCCACCACTCAT
102881454 A-TAAATGT
1 AGTAAATGT
102881462 CATACACACA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 18 0.60
27 12 0.40
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AGTAAATGTGACATAGCCACCACTCAT
Found at i:102886969 original size:18 final size:19
Alignment explanation
Indices: 102886946--102886984 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
102886936 ATATATTCAC
102886946 ACATTTTCA-CAATTCAAT
1 ACATTTTCATCAATTCAAT
102886964 ACATTTTCATTCAATTCAAT
1 ACATTTTCA-TCAATTCAAT
102886984 A
1 A
102886985 TCAATACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (19 bp):
ACATTTTCATCAATTCAAT
Found at i:102887651 original size:25 final size:23
Alignment explanation
Indices: 102887625--102887701 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 23
102887615 AATCCTAACT
102887625 TTTTCTCCTTTCTTTCTCTTTTTC
1 TTTTCTCCTTTC-TTCTCTTTTTC
* *
102887649 TTTTCTTTCTTTCCTTCTCTGTTTC
1 TTTTC-TCCTTT-CTTCTCTTTTTC
* *
102887674 GTTTCTGCTTTGGCTT-TCTTTTTC
1 TTTTCTCCTTT--CTTCTCTTTTTC
102887698 TTTT
1 TTTT
102887702 TCTATTTATT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
24 20 0.47
25 22 0.51
26 1 0.02
ACGTcount: A:0.00, C:0.25, G:0.06, T:0.69
Consensus pattern (23 bp):
TTTTCTCCTTTCTTCTCTTTTTC
Found at i:102887655 original size:17 final size:18
Alignment explanation
Indices: 102887623--102887658 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
102887613 AAAATCCTAA
102887623 CTTTTTCTCCTTTCTTTCT
1 CTTTTTCT-CTTTCTTTCT
102887642 CTTTTTCT-TTTCTTTCT
1 CTTTTTCTCTTTCTTTCT
102887659 TTCCTTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (18 bp):
CTTTTTCTCTTTCTTTCT
Found at i:102887678 original size:21 final size:21
Alignment explanation
Indices: 102887632--102887679 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
102887622 ACTTTTTCTC
*
102887632 CTTTCTTTCTCTTTTTCTTTT
1 CTTTCTTTCTCTTTCTCTTTT
102887653 CTTTCTTTC-C-TTCTCTGTTT
1 CTTTCTTTCTCTTTCTCT-TTT
102887673 CGTTTCT
1 C-TTTCT
102887680 GCTTTGGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 5 0.21
20 5 0.21
21 14 0.58
ACGTcount: A:0.00, C:0.27, G:0.04, T:0.69
Consensus pattern (21 bp):
CTTTCTTTCTCTTTCTCTTTT
Found at i:102887744 original size:5 final size:5
Alignment explanation
Indices: 102887734--102887758 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
102887724 GTTTTATTAG
102887734 ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA
102887759 TATTGATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:102892549 original size:26 final size:26
Alignment explanation
Indices: 102892513--102892596 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
102892503 TGATACAAAT
102892513 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
102892539 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*** *
102892565 TGATAGCGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
102892591 TGATAA
1 TGATAA
102892597 GAATTTCATG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:102894320 original size:137 final size:137
Alignment explanation
Indices: 102894074--102894360 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
102894064 GAGTAGTCTC
*
102894074 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCGATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
102894139 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
102894204 ACTGTTA
131 ACTGTTA
102894211 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
102894276 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
102894341 ACTGTTA
131 ACTGTTA
*
102894348 CCTAAATGGGCTT
1 CCCAAATGGGCTT
102894361 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:102897153 original size:21 final size:19
Alignment explanation
Indices: 102897120--102897158 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
102897110 AAAATCCTAG
102897120 CTTTTTCTTCTTTCTTTCT
1 CTTTTTCTTCTTTCTTTCT
102897139 CTTTTTCTTTTCTTTCTTTC
1 CTTTTTC--TTCTTTCTTTC
102897159 CTTCTCTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (19 bp):
CTTTTTCTTCTTTCTTTCT
Found at i:102897155 original size:25 final size:25
Alignment explanation
Indices: 102897122--102897170 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
102897112 AATCCTAGCT
*
102897122 TTTTCTTCTTTCTTTCTCT-TTTTC
1 TTTTCTTCTTTCCTTCTCTGTTTTC
102897146 TTTTCTTTCTTTCCTTCTCTGTTTT
1 TTTTC-TTCTTTCCTTCTCTGTTTT
102897171 ATTTCTACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 13 0.59
26 4 0.18
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.73
Consensus pattern (25 bp):
TTTTCTTCTTTCCTTCTCTGTTTTC
Found at i:102897170 original size:21 final size:21
Alignment explanation
Indices: 102897127--102897176 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
102897117 TAGCTTTTTC
*
102897127 TTCTTTCTTTCTCTTTTTCTT
1 TTCTTTCTTTCTCTTTCTCTT
*
102897148 TTCTTTCTTTC-CTTCTCTGTT
1 TTCTTTCTTTCTCTT-TCTCTT
*
102897169 TTATTTCT
1 TTCTTTCT
102897177 ACTTTGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.72
Consensus pattern (21 bp):
TTCTTTCTTTCTCTTTCTCTT
Found at i:102897175 original size:25 final size:25
Alignment explanation
Indices: 102897123--102897176 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
102897113 ATCCTAGCTT
* *
102897123 TTTC-TTCTTTCTTTCTCTTTTTCT
1 TTTCTTTCTTTCCTTCTCTTTTTCA
102897147 TTTCTTTCTTTCCTTCTCTGTTTT-A
1 TTTCTTTCTTTCCTTCTCT-TTTTCA
102897172 TTTCT
1 TTTCT
102897177 ACTTTGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.72
Consensus pattern (25 bp):
TTTCTTTCTTTCCTTCTCTTTTTCA
Found at i:102897241 original size:5 final size:5
Alignment explanation
Indices: 102897231--102897263 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
102897221 GTTTTATTAT
102897231 ATATA ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATA
102897264 CTTATATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:102907063 original size:19 final size:19
Alignment explanation
Indices: 102907039--102907136 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
102907029 AATCTTTAAG
102907039 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
102907058 GATATGGAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102907077 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102907094 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102907113 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
102907134 GAT
1 GAT
102907137 CTTGTATCTT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:102907069 original size:36 final size:35
Alignment explanation
Indices: 102907029--102907136 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
102907019 ATGGAAATAT
*
102907029 AATCTTTAAGGATATGCAATCTTAGATATGATATGG
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
102907065 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
102907101 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
102907137 CTTGTATCTT
Statistics
Matches: 60, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.45
37 1 0.02
38 7 0.12
40 10 0.17
41 6 0.10
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:102908862 original size:24 final size:24
Alignment explanation
Indices: 102908835--102908882 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
102908825 TTGTTTTAAA
102908835 GAAAACCAGATTTAAATTGTGCTT
1 GAAAACCAGATTTAAATTGTGCTT
102908859 GAAAACCAGATTTAAATTGTGCTT
1 GAAAACCAGATTTAAATTGTGCTT
102908883 ATCAGTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (24 bp):
GAAAACCAGATTTAAATTGTGCTT
Found at i:102915283 original size:11 final size:11
Alignment explanation
Indices: 102915267--102915292 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
102915257 ATGATGAGGA
102915267 CCCCGCTTGAG
1 CCCCGCTTGAG
102915278 CCCCGCTTGAG
1 CCCCGCTTGAG
102915289 CCCC
1 CCCC
102915293 TCTACGGCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.54, G:0.23, T:0.15
Consensus pattern (11 bp):
CCCCGCTTGAG
Found at i:102916845 original size:17 final size:18
Alignment explanation
Indices: 102916813--102916847 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
102916803 GTGTAGTTCA
*
102916813 CCTGTGTGGACCCACACG
1 CCTGTATGGACCCACACG
102916831 CCTGTATGG-CCCACACG
1 CCTGTATGGACCCACACG
102916848 GCCCAATGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.40, G:0.26, T:0.17
Consensus pattern (18 bp):
CCTGTATGGACCCACACG
Found at i:102920341 original size:14 final size:14
Alignment explanation
Indices: 102920306--102920356 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
102920296 AGAAAAGAAA
102920306 GAATGATGAGGGAT
1 GAATGATGAGGGAT
**
102920320 GAGGGATGAGGGAT
1 GAATGATGAGGGAT
* **
102920334 AAATGATGAATGAT
1 GAATGATGAGGGAT
102920348 GAATGATGA
1 GAATGATGA
102920357 ATGATGAGGA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.22
Consensus pattern (14 bp):
GAATGATGAGGGAT
Found at i:102920341 original size:21 final size:21
Alignment explanation
Indices: 102920317--102920365 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
102920307 AATGATGAGG
*
102920317 GATGAGGGATGAGGGATAAAT
1 GATGAGGGATGAAGGATAAAT
** * *
102920338 GATGAATGATGAATGATGAAT
1 GATGAGGGATGAAGGATAAAT
102920359 GATGAGG
1 GATGAGG
102920366 AATCAAATGA
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.22
Consensus pattern (21 bp):
GATGAGGGATGAAGGATAAAT
Found at i:102920345 original size:7 final size:7
Alignment explanation
Indices: 102920335--102920363 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
102920325 ATGAGGGATA
102920335 AATGATG
1 AATGATG
102920342 AATGATG
1 AATGATG
102920349 AATGATG
1 AATGATG
102920356 AATGATG
1 AATGATG
102920363 A
1 A
102920364 GGAATCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (7 bp):
AATGATG
Found at i:102920356 original size:35 final size:36
Alignment explanation
Indices: 102920306--102920375 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 36
102920296 AGAAAAGAAA
* * *
102920306 GAATGATGAGGGATGAGGGATGAGGGAT-AAATGAT
1 GAATGATGAAGGATGAAGGATGAGGAATCAAATGAT
* *
102920341 GAATGATGAATGATGAATGATGAGGAATCAAATGA
1 GAATGATGAAGGATGAAGGATGAGGAATCAAATGA
102920376 GGTCTTATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 23 0.79
36 6 0.21
ACGTcount: A:0.41, C:0.01, G:0.36, T:0.21
Consensus pattern (36 bp):
GAATGATGAAGGATGAAGGATGAGGAATCAAATGAT
Found at i:102929186 original size:53 final size:58
Alignment explanation
Indices: 102929128--102929256 Score: 144
Period size: 61 Copynumber: 2.2 Consensus size: 58
102929118 TTGTTATTAA
* *
102929128 ATTTTAATAGAATTA-T-TT-AAT-A-TTTAATAATAAAT-AATAAATAATTTAATCAT
1 ATTTTAATAAAATTATTATTAAATAAGTTTAATAA-AAATAAATAAATAATTTAATAAT
102929181 ATTTTAATAAAATTATTATTAAATACAGTTTAATAAAAATAAAAATAAATAATTTAATAAT
1 ATTTTAATAAAATTATTATTAAATA-AGTTTAATAAAAAT--AAATAAATAATTTAATAAT
*
102929242 ATTATTAATATAATT
1 ATT-TTAATAAAATT
102929257 TGGTTCATCT
Statistics
Matches: 63, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
53 14 0.22
54 1 0.02
55 2 0.03
56 3 0.05
58 5 0.08
59 8 0.13
61 20 0.32
62 10 0.16
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (58 bp):
ATTTTAATAAAATTATTATTAAATAAGTTTAATAAAAATAAATAAATAATTTAATAAT
Found at i:102929212 original size:26 final size:24
Alignment explanation
Indices: 102929183--102929251 Score: 75
Period size: 26 Copynumber: 2.8 Consensus size: 24
102929173 TTAATCATAT
*
102929183 TTTAATAAAATTATTATTAAATACA
1 TTTAATAAAATTATTAATAAATA-A
* **
102929208 GTTTAATAAAAATAAAAATAAATAA
1 -TTTAATAAAATTATTAATAAATAA
*
102929233 TTTAATAATATTATTAATA
1 TTTAATAAAATTATTAATA
102929252 TAATTTGGTT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
24 15 0.43
25 1 0.03
26 19 0.54
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (24 bp):
TTTAATAAAATTATTAATAAATAA
Found at i:102932444 original size:8 final size:7
Alignment explanation
Indices: 102932423--102932632 Score: 50
Period size: 7 Copynumber: 29.1 Consensus size: 7
102932413 ACCCTATTTT
102932423 TATATT-
1 TATATTA
102932429 TATATTA
1 TATATTA
102932436 TATAGTTA
1 TATA-TTA
*
102932444 TTCTATTA
1 -TATATTA
*
102932452 TGTATTA
1 TATATTA
*
102932459 TTTA-TA
1 TATATTA
102932465 T-TATTA
1 TATATTA
102932471 TATTATTA
1 TA-TATTA
*
102932479 T-TTTTCA
1 TATATT-A
102932486 CTA-ATTA
1 -TATATTA
*
102932493 TTATTATTT
1 -TA-TATTA
*
102932502 TACATTA
1 TATATTA
102932509 T-TATTTA
1 TATA-TTA
102932516 TATATTA
1 TATATTA
*
102932523 T-TGTTA
1 TATATTA
*
102932529 TATTTTTA
1 TA-TATTA
*
102932537 CTTGTATTA
1 --TATATTA
102932546 TATATT-
1 TATATTA
102932552 TATTAATTA
1 TA-T-ATTA
*
102932561 TTTA-TA
1 TATATTA
*
102932567 TGTATTA
1 TATATTA
102932574 TATATTA
1 TATATTA
*
102932581 TATTCACATA
1 TA-T-A-TTA
102932591 TATACTT-
1 TATA-TTA
102932598 TCATATTA
1 T-ATATTA
102932606 TATATTA
1 TATATTA
102932613 TA-ATTA
1 TATATTA
102932619 T-T-TTA
1 TATATTA
102932624 TATTATTA
1 TA-TATTA
102932632 T
1 T
102932633 GTCATTTTTT
Statistics
Matches: 154, Mismatches: 20, Indels: 58
0.66 0.09 0.25
Matches are distributed among these distances:
5 6 0.04
6 33 0.21
7 58 0.38
8 39 0.25
9 13 0.08
10 5 0.03
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (7 bp):
TATATTA
Found at i:102932452 original size:27 final size:24
Alignment explanation
Indices: 102932422--102932576 Score: 82
Period size: 24 Copynumber: 6.0 Consensus size: 24
102932412 AACCCTATTT
*
102932422 TTATATTTATATTATATAGTTATTCTA
1 TTATATTT-TATT-TATA-TTATTATA
* *
102932449 TTATGTATTATTTATATTATTATA
1 TTATATTTTATTTATATTATTATA
* * *
102932473 TTATTATTTTTCACTAATTATTATTATT
1 TTA-TA-TTTT-ATTTA-TATTATTATA
* *
102932501 TTACATTATTATTTATA-TATTATTG
1 TTATATT-TTATTTATATTATTA-TA
* *
102932526 TTATATTTTTACTTGTATTA-TATA
1 TTATA-TTTTATTTATATTATTATA
102932550 TT-TATTAATTATTTATATGTATTATA
1 TTATATT--TTATTTATAT-TATTATA
102932576 T
1 T
102932577 ATTATATTCA
Statistics
Matches: 98, Mismatches: 18, Indels: 25
0.70 0.13 0.18
Matches are distributed among these distances:
22 2 0.02
23 2 0.02
24 26 0.27
25 23 0.23
26 21 0.21
27 12 0.12
28 12 0.12
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (24 bp):
TTATATTTTATTTATATTATTATA
Found at i:102932472 original size:40 final size:40
Alignment explanation
Indices: 102932417--102932524 Score: 113
Period size: 41 Copynumber: 2.8 Consensus size: 40
102932407 TTTTTAACCC
102932417 TATT-TTTATA-T-TTATATTATATAGTTATT-CT-ATTAT
1 TATTATTTATATTATTATATTATATA-TTATTACTAATTAT
*
102932453 GTATTATTTATATTATTATATTAT-TATTTTTCACTAATTAT
1 -TATTATTTATATTATTATATTATATATTATT-ACTAATTAT
*
102932494 TATTATTTTACATTATTAT-TTATATATTATT
1 TATTA-TTTATATTATTATATTATATATTATT
102932525 GTTATATTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
37 4 0.07
38 10 0.17
39 3 0.05
40 20 0.33
41 23 0.38
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (40 bp):
TATTATTTATATTATTATATTATATATTATTACTAATTAT
Found at i:102932476 original size:17 final size:17
Alignment explanation
Indices: 102932425--102932630 Score: 72
Period size: 16 Copynumber: 12.2 Consensus size: 17
102932415 CCTATTTTTA
102932425 TATTTATATTA-TATAGT
1 TATTTATATTATTATA-T
* *
102932442 TA-TTCTATTA-TGTAT
1 TATTTATATTATTATAT
102932457 TATTTATATTATTATAT
1 TATTTATATTATTATAT
102932474 TA-TTAT-TT-TTCACTAAT
1 TATTTATATTATT-A-T-AT
*
102932491 TA-TTATTATT-TTACAT
1 TATTTA-TATTATTATAT
102932507 TA-TTAT-TTA-TATAT
1 TATTTATATTATTATAT
*
102932521 TATTGTTATATTTTTACT-T
1 TA-T-TTATATTATTA-TAT
102932540 GTATTATATATTTATTA-AT
1 -TATT-TATA-TTATTATAT
102932559 TATTTATATGTATTATA-
1 TATTTATAT-TATTATAT
*
102932576 TA-TTATATTCA-CATAT
1 TATTTATATT-ATTATAT
102932592 ATACTTTCATATTA-TATAT
1 -TA-TTT-ATATTATTATAT
*
102932611 TA-TAATTATT-TTATAT
1 TATTTA-TATTATTATAT
102932627 TATT
1 TATT
102932631 ATGTCATTTT
Statistics
Matches: 149, Mismatches: 11, Indels: 58
0.68 0.05 0.27
Matches are distributed among these distances:
14 10 0.07
15 12 0.08
16 49 0.33
17 33 0.22
18 12 0.08
19 20 0.13
20 13 0.09
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (17 bp):
TATTTATATTATTATAT
Found at i:102932594 original size:28 final size:28
Alignment explanation
Indices: 102932539--102932594 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
102932529 TATTTTTACT
* *
102932539 TGTATTATATATTTATTAATTATTTATA
1 TGTATTATATATTTATTAATCATATATA
*
102932567 TGTATTATATATTATATTCA-CATATATA
1 TGTATTATATATT-TATTAATCATATATA
102932595 CTTTCATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 19 0.79
29 5 0.21
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (28 bp):
TGTATTATATATTTATTAATCATATATA
Found at i:102932631 original size:13 final size:13
Alignment explanation
Indices: 102932491--102932632 Score: 59
Period size: 13 Copynumber: 10.7 Consensus size: 13
102932481 TTTCACTAAT
102932491 TATTATTATTTTA
1 TATTATTATTTTA
*
102932504 CATTATTA-TTTA
1 TATTATTATTTTA
102932516 TA-TATTATTGTTA
1 TATTATTATT-TTA
* * *
102932529 TATTTTTA-CTTG
1 TATTATTATTTTA
102932541 TATTA-TATATTTA
1 TATTATTAT-TTTA
*
102932554 T-TAATTA-TTTA
1 TATTATTATTTTA
102932565 TATGTATTATATATTA
1 TAT-TATTAT-T-TTA
102932581 TATTCACATATATACTTTCA
1 TATT---AT-TAT--TTT-A
*
102932601 TATTA-TATATTA
1 TATTATTATTTTA
102932613 TA--ATTATTTTA
1 TATTATTATTTTA
102932624 TATTATTAT
1 TATTATTAT
102932633 GTCATTTTTT
Statistics
Matches: 96, Mismatches: 13, Indels: 40
0.64 0.09 0.27
Matches are distributed among these distances:
10 1 0.01
11 20 0.21
12 18 0.19
13 28 0.29
14 4 0.04
15 5 0.05
16 6 0.06
17 1 0.01
18 2 0.02
19 5 0.05
20 6 0.06
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (13 bp):
TATTATTATTTTA
Found at i:102938531 original size:27 final size:28
Alignment explanation
Indices: 102938447--102938544 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
102938437 CATGAGATTG
* * * *
102938447 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
102938476 GCACTAAGTGTGTGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
102938504 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
102938531 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
102938545 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 24 0.39
28 21 0.34
29 17 0.27
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:102938555 original size:27 final size:27
Alignment explanation
Indices: 102938475--102938557 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
102938465 TAAATTGTAC
* * *
102938475 AGCACTAAGTGTGTGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
102938503 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
102938530 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
102938557 A
1 A
102938558 TTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 30 0.61
28 19 0.39
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:102938558 original size:29 final size:27
Alignment explanation
Indices: 102938447--102938558 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
102938437 CATGAGATTG
** * *
102938447 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* * *
102938476 GCACTAAGTGTGTGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
102938504 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
102938531 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
102938559 TTTTGAATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 23 0.33
28 27 0.39
29 20 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:102940255 original size:25 final size:25
Alignment explanation
Indices: 102940225--102940303 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 25
102940215 AGCAAATGAT
*
102940225 TATAAAGTTAAAAT-AGATCTTATTA
1 TATAAA-TAAAAATAAGATCTTATTA
102940250 TATAAATAAAAATGAAAGATCTTATTA
1 TATAAATAAAAAT--AAGATCTTATTA
*
102940277 TATAAACAAAAATAAAAGATCTTATTA
1 TATAAATAAAAAT--AAGATCTTATTA
102940304 AAAGGACATC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
24 6 0.12
25 6 0.12
27 36 0.75
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.34
Consensus pattern (25 bp):
TATAAATAAAAATAAGATCTTATTA
Found at i:102940271 original size:27 final size:27
Alignment explanation
Indices: 102940239--102940303 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
102940229 AAGTTAAAAT
* *
102940239 AGATCTTATTATATAAATAAAAATGAA
1 AGATCTTATTATATAAACAAAAATAAA
102940266 AGATCTTATTATATAAACAAAAATAAA
1 AGATCTTATTATATAAACAAAAATAAA
102940293 AGATCTTATTA
1 AGATCTTATTA
102940304 AAAGGACATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (27 bp):
AGATCTTATTATATAAACAAAAATAAA
Found at i:102949087 original size:23 final size:23
Alignment explanation
Indices: 102949055--102949098 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
102949045 ACTACCATTT
102949055 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
102949078 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
102949099 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:102949091 original size:13 final size:11
Alignment explanation
Indices: 102949059--102949101 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
102949049 CCATTTTCTA
*
102949059 AATAAAATAAT
1 AATAAAATATT
102949070 AAT-AAATATCT
1 AATAAAATAT-T
102949081 AAGTAAAATATT
1 AA-TAAAATATT
102949093 AATAAAATA
1 AATAAAATA
102949102 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:102950853 original size:8 final size:9
Alignment explanation
Indices: 102950817--102950850 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
102950807 TTTAATTAGA
102950817 AATTAATTT
1 AATTAATTT
*
102950826 AGTTAATTT
1 AATTAATTT
102950835 AATTAA-TT
1 AATTAATTT
102950843 AATTAATT
1 AATTAATT
102950851 AATATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (9 bp):
AATTAATTT
Found at i:102953808 original size:47 final size:45
Alignment explanation
Indices: 102953650--102953966 Score: 171
Period size: 47 Copynumber: 6.8 Consensus size: 45
102953640 GATTTGTGCA
*
102953650 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCCAGACA-AAGG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAT--AGACATAAGG
* * * ** *
102953698 CTAGTGTAAGACATGTCTGGGGCATGCATCAGCCATA-TTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATC-GGCATAGACATAAG-G
*
102953744 CCAGTGTAAGACTATGTCTGGGACATGGCATCGGCATAGAGATAAGTG
1 CCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCATAGACATAAG-G
* * * *
102953792 CCA-TAGTAAGACATGTCTGGGACATGCATCGGCCTTGACAGAGATAG
1 CCAGT-GTAAGACATGTCTGGGACATGCATCGGCATAGACATA-A-GG
* * ** ** * *
102953839 CCAATTTAAGATGTGTCTGGGACACCCATCGGCCA-AGA-GT-TGTG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGG-CATAGACATAAG-G
* * * * * *
102953883 CTAGTGTAAGACATGTTTAGGACATGCATCAGCA-CGCATATATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCATAG-ACATA--AG-G
102953931 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
102953967 ATTTATACCA
Statistics
Matches: 203, Mismatches: 47, Indels: 36
0.71 0.16 0.13
Matches are distributed among these distances:
43 3 0.01
44 25 0.12
45 4 0.02
46 30 0.15
47 77 0.38
48 44 0.22
49 12 0.06
50 8 0.04
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (45 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCATAGACATAAGG
Found at i:102953811 original size:94 final size:94
Alignment explanation
Indices: 102953650--102953966 Score: 314
Period size: 94 Copynumber: 3.4 Consensus size: 94
102953640 GATTTGTGCA
* *
102953650 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCCAGACA-AAG-GCTAGTGTAAGACATG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT--AGAGATAAGTGCTAGTGTAAGACATG
*
102953713 TCTGGGGCATGCATCAGCCATATTATGAGAG
64 TCTGGGACATGCATCAGCCATATTATGAGAG
* *
102953744 CCAGTGTAAGACTATGTCTGGGACATGGCATCGGCATAGAGATAAGTGCCA-TAGTAAGACATGT
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGAGATAAGTGCTAGT-GTAAGACATGT
* * *
102953808 CTGGGACATGCATCGGCC-T-TGACAGAGATAG
65 CTGGGACATGCATCAGCCATATTA-TGAG--AG
* * ** ** *
102953839 CCAATTTAAGA-TGTGTCTGGGACA-CCCATCGGCCA-AGAG-T-TGTGCTAGTGTAAGACATGT
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATAGAGATAAGTGCTAGTGTAAGACATGT
* *
102953899 TTAGGACATGCATCAGCACGCATA-TATGAGAG
65 CTGGGACATGCATCAG--C-CATATTATGAGAG
102953931 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
102953967 ATTTATACCA
Statistics
Matches: 182, Mismatches: 26, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
91 29 0.16
92 19 0.10
93 32 0.18
94 89 0.49
95 13 0.07
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (94 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGAGATAAGTGCTAGTGTAAGACATGTC
TGGGACATGCATCAGCCATATTATGAGAG
Found at i:102959994 original size:13 final size:13
Alignment explanation
Indices: 102959976--102960001 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102959966 GCTCGGTAGG
102959976 GACACGCCCGTGT
1 GACACGCCCGTGT
102959989 GACACGCCCGTGT
1 GACACGCCCGTGT
102960002 ACGATTACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:102962704 original size:18 final size:18
Alignment explanation
Indices: 102962670--102962704 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102962660 GCTCAATACG
*
102962670 CTTCACTTCCTCTACTAT
1 CTTCACTTCCTCCACTAT
*
102962688 CTTCACTTTCTCCACTA
1 CTTCACTTCCTCCACTA
102962705 AAATCACGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (18 bp):
CTTCACTTCCTCCACTAT
Found at i:102964816 original size:62 final size:61
Alignment explanation
Indices: 102964719--102964884 Score: 206
Period size: 62 Copynumber: 2.7 Consensus size: 61
102964709 TGCTCTTGTC
* * * *
102964719 CCTGGCCATGTGGTTTTATACAATGAACAATGAGTTACACAGCCTGGGAACACGCATGTGTT
1 CCTGGCCGTATGGTTTTATACAATGAACAATGAGTTACACAGCCAGGGAACACGCATATG-T
* * * *
102964781 CCTGGCCGTATGGTTTTATACAATGAACAGTGAGTTACACGGCCAGGGCACACGCTTATGT
1 CCTGGCCGTATGGTTTTATACAATGAACAATGAGTTACACAGCCAGGGAACACGCATATGT
* ** *
102964842 CATTGGGTGTAGGGTTTTATACAATGAACAATGAGTTACACAG
1 C-CTGGCCGTATGGTTTTATACAATGAACAATGAGTTACACAG
102964885 TCGTTCACAT
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
61 2 0.02
62 87 0.98
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (61 bp):
CCTGGCCGTATGGTTTTATACAATGAACAATGAGTTACACAGCCAGGGAACACGCATATGT
Found at i:102965496 original size:16 final size:16
Alignment explanation
Indices: 102965475--102965517 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
102965465 ATAAAGAAGG
* *
102965475 AAGAAAGAAAGGGAGA
1 AAGAAAGAAAAGGAAA
102965491 AAGAAA-AAAAGGAAA
1 AAGAAAGAAAAGGAAA
102965506 AAGAAAAGAAAA
1 AAG-AAAGAAAA
102965518 AAATGGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 10 0.43
16 9 0.39
17 4 0.17
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAGAAAGAAAAGGAAA
Found at i:102974847 original size:54 final size:55
Alignment explanation
Indices: 102974732--102974867 Score: 139
Period size: 54 Copynumber: 2.5 Consensus size: 55
102974722 TGGCCGTGCA
* ** * **
102974732 CAAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGCCTTGAAACCATGGC
1 CAAACCTGTCAAATTAACACGGGCGTGCAACACGCCCGTGCCAAGAAACCATGGC
* * * *
102974787 CAAACCTGTCAAATTAACACGGGC-TGTAACACGCCCGTGCCAAGCAACCTTGGT
1 CAAACCTGTCAAATTAACACGGGCGTGCAACACGCCCGTGCCAAGAAACCATGGC
* * * *
102974841 CGAACCTGTTAGATTAACACAGGCGTG
1 CAAACCTGTCAAATTAACACGGGCGTG
102974868 GGAGAAGCGA
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
54 43 0.65
55 23 0.35
ACGTcount: A:0.29, C:0.32, G:0.23, T:0.16
Consensus pattern (55 bp):
CAAACCTGTCAAATTAACACGGGCGTGCAACACGCCCGTGCCAAGAAACCATGGC
Found at i:102975097 original size:58 final size:58
Alignment explanation
Indices: 102975007--102975123 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
102974997 TTGGGGAACA
102975007 TGGGCATGTTCCATGGCCGTGTGTTCCAAAATCTATAAATACCCTGTACTATTTATTG
1 TGGGCATGTTCCATGGCCGTGTGTTCCAAAATCTATAAATACCCTGTACTATTTATTG
102975065 TGGGCATGTTCCATGGCCGTGTGTTCCAAAATCTATAAATACCCTGTACTATTTATTG
1 TGGGCATGTTCCATGGCCGTGTGTTCCAAAATCTATAAATACCCTGTACTATTTATTG
102975123 T
1 T
102975124 CTTCTTCACT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (58 bp):
TGGGCATGTTCCATGGCCGTGTGTTCCAAAATCTATAAATACCCTGTACTATTTATTG
Found at i:102975441 original size:23 final size:23
Alignment explanation
Indices: 102975415--102975460 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
102975405 TATTCTATTT
102975415 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACTATGC
* * *
102975438 TCATTCTCATGCTATTACTATGC
1 TCATACCCATGCCATTACTATGC
102975461 CAATGACACG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.30, G:0.09, T:0.37
Consensus pattern (23 bp):
TCATACCCATGCCATTACTATGC
Found at i:102976824 original size:19 final size:20
Alignment explanation
Indices: 102976792--102976829 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
102976782 TCTTTAAAAA
*
102976792 TTTTTATTTATTATTTTATG
1 TTTTTACTTATTATTTTATG
102976812 TTTTTACTT-TTATTTTAT
1 TTTTTACTTATTATTTTAT
102976830 TTTAAGACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (20 bp):
TTTTTACTTATTATTTTATG
Found at i:102986296 original size:55 final size:55
Alignment explanation
Indices: 102986225--102986345 Score: 152
Period size: 55 Copynumber: 2.2 Consensus size: 55
102986215 CTGCCAAAAC
* * **
102986225 AACACGGGCGTGCGACACGCCTGTGCCTGGAAACTGTGACCGAACCTGTCAAATT
1 AACACGGGCGTACGACACGCCCGTGCCAAGAAACTGTGACCGAACCTGTCAAATT
* * ** * *
102986280 AACACGGGCGTACGACACGCCCGTGCCAAGTACCTGTGGTCTAACCTGTTAAATT
1 AACACGGGCGTACGACACGCCCGTGCCAAGAAACTGTGACCGAACCTGTCAAATT
102986335 AACACGGGCGT
1 AACACGGGCGT
102986346 GGGCCTCCAT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (55 bp):
AACACGGGCGTACGACACGCCCGTGCCAAGAAACTGTGACCGAACCTGTCAAATT
Found at i:102987009 original size:26 final size:26
Alignment explanation
Indices: 102986980--102987033 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
102986970 ACCACAAAAG
102986980 TATGCCATTGAACTTATTGTTTTAGT
1 TATGCCATTGAACTTATTGTTTTAGT
102987006 TATGCCATTGAACTTATTGTTTTAGT
1 TATGCCATTGAACTTATTGTTTTAGT
102987032 TA
1 TA
102987034 AACTTAGTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.11, G:0.15, T:0.50
Consensus pattern (26 bp):
TATGCCATTGAACTTATTGTTTTAGT
Found at i:102992210 original size:44 final size:44
Alignment explanation
Indices: 102992156--102992271 Score: 178
Period size: 44 Copynumber: 2.6 Consensus size: 44
102992146 TATACGTACT
*
102992156 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCC
1 GATGCGTGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCC
* *
102992200 GATGCGTGTCCCAAATATGTCTTACACTAGCACAACTCTTAGCC
1 GATGCGTGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCC
* * *
102992244 GATGCGTGTCCAAGACACGTCATACACT
1 GATGCGTGTCCCAGACATGTCTTACACT
102992272 GGCTATAATA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (44 bp):
GATGCGTGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCC
Found at i:102992322 original size:47 final size:47
Alignment explanation
Indices: 102992266--102992368 Score: 179
Period size: 47 Copynumber: 2.2 Consensus size: 47
102992256 AGACACGTCA
*
102992266 TACACTGGCTATAATATTGTGGTCAATGCATGTCCCAGACATGGTCT
1 TACACTGGCTATAATATTGTGGCCAATGCATGTCCCAGACATGGTCT
* *
102992313 TACACTGGCTATCATATTGTGGCCGATGCATGTCCCAGACATGGTCT
1 TACACTGGCTATAATATTGTGGCCAATGCATGTCCCAGACATGGTCT
102992360 TACACTGGC
1 TACACTGGC
102992369 ACACAAGTAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.30
Consensus pattern (47 bp):
TACACTGGCTATAATATTGTGGCCAATGCATGTCCCAGACATGGTCT
Found at i:102995425 original size:16 final size:16
Alignment explanation
Indices: 102995404--102995447 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
102995394 TAGTCTATAT
102995404 AACCCCTACAACCCTA
1 AACCCCTACAACCCTA
102995420 AACCCCTACAACCCTA
1 AACCCCTACAACCCTA
102995436 AACCCCTA-AACC
1 AACCCCTACAACC
102995448 TAATAAAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 4 0.14
16 24 0.86
ACGTcount: A:0.39, C:0.50, G:0.00, T:0.11
Consensus pattern (16 bp):
AACCCCTACAACCCTA
Found at i:102995426 original size:8 final size:8
Alignment explanation
Indices: 102995404--102995447 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
102995394 TAGTCTATAT
102995404 AACCCCTA
1 AACCCCTA
102995412 CAA-CCCTA
1 -AACCCCTA
102995420 AACCCCTA
1 AACCCCTA
102995428 CAA-CCCTA
1 -AACCCCTA
102995436 AACCCCTA
1 AACCCCTA
102995444 AACC
1 AACC
102995448 TAATAAAACC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
7 4 0.12
8 24 0.75
9 4 0.12
ACGTcount: A:0.39, C:0.50, G:0.00, T:0.11
Consensus pattern (8 bp):
AACCCCTA
Found at i:102995459 original size:17 final size:18
Alignment explanation
Indices: 102995434--102995469 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
102995424 CCTACAACCC
*
102995434 TAAACCCCTAAAC-CTAA
1 TAAAACCCTAAACACTAA
102995451 TAAAACCCTAAACACTAA
1 TAAAACCCTAAACACTAA
102995469 T
1 T
102995470 CTATAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (18 bp):
TAAAACCCTAAACACTAA
Found at i:102996125 original size:19 final size:20
Alignment explanation
Indices: 102996078--102996125 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
102996068 ATATTAGATT
*
102996078 TAAA-AAAAATATTGATAAA
1 TAAATAAAAACATTGATAAA
102996097 TAAATAAAAACATTGAT-AA
1 TAAATAAAAACATTGATAAA
102996116 TAAATAAAAA
1 TAAATAAAAA
102996126 TAAAATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (20 bp):
TAAATAAAAACATTGATAAA
Found at i:102996128 original size:6 final size:6
Alignment explanation
Indices: 102996112--102996146 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
102996102 AAAAACATTG
102996112 ATAATAA ATAAAA ATAAAA TATAAAA ATAAAA ATA
1 ATAA-AA ATAAAA ATAAAA -ATAAAA ATAAAA ATA
102996147 TATAAAATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 17 0.63
7 10 0.37
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (6 bp):
ATAAAA
Found at i:102996135 original size:13 final size:13
Alignment explanation
Indices: 102996119--102996155 Score: 56
Period size: 14 Copynumber: 2.7 Consensus size: 13
102996109 TTGATAATAA
102996119 ATAAAAATAAAAT
1 ATAAAAATAAAAT
102996132 ATAAAAATAAAAAT
1 ATAAAAAT-AAAAT
102996146 ATATAAAATA
1 ATA-AAAATA
102996156 GAGATTAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.36
14 9 0.41
15 5 0.23
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAAAAATAAAAT
Found at i:102996144 original size:14 final size:14
Alignment explanation
Indices: 102996119--102996155 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
102996109 TTGATAATAA
102996119 ATAAAAAT-AAAAT
1 ATAAAAATAAAAAT
102996132 ATAAAAATAAAAAT
1 ATAAAAATAAAAAT
102996146 ATATAAAATA
1 ATA-AAAATA
102996156 GAGATTAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 8 0.36
14 8 0.36
15 6 0.27
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
ATAAAAATAAAAAT
Found at i:103000678 original size:44 final size:44
Alignment explanation
Indices: 103000615--103000703 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
103000605 GCTATCGCTT
103000615 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
103000659 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
103000703 T
1 T
103000704 GATGCTATAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46
Consensus pattern (44 bp):
TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
Done.