Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 308 of 362
Found at i:103230547 original size:17 final size:17
Alignment explanation
Indices: 103230521--103230554 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
103230511 AAGAATTATT
103230521 TTTATATATTTTATATA
1 TTTATATATTTTATATA
* *
103230538 TTTATGTATTTTTTATA
1 TTTATATATTTTATATA
103230555 ATAAATAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
TTTATATATTTTATATA
Found at i:103237924 original size:31 final size:31
Alignment explanation
Indices: 103237888--103237946 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
103237878 TGAGTTTGGC
103237888 TTCAATGTTCATTTAGGTACTTGAATTTAGT
1 TTCAATGTTCATTTAGGTACTTGAATTTAGT
*
103237919 TTCAATGTTCATTTAGGTATTTGAATTT
1 TTCAATGTTCATTTAGGTACTTGAATTT
103237947 TTTTAATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.08, G:0.15, T:0.51
Consensus pattern (31 bp):
TTCAATGTTCATTTAGGTACTTGAATTTAGT
Found at i:103242678 original size:27 final size:27
Alignment explanation
Indices: 103242648--103242702 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
103242638 TTGAGCTTAA
*
103242648 AAGTCTGATAGCTATTATTGATGGGTC
1 AAGTCTCATAGCTATTATTGATGGGTC
*
103242675 AAGTCTCATGGCTATTATTGATGGGTC
1 AAGTCTCATAGCTATTATTGATGGGTC
103242702 A
1 A
103242703 CACTTTTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.36
Consensus pattern (27 bp):
AAGTCTCATAGCTATTATTGATGGGTC
Found at i:103247525 original size:6 final size:6
Alignment explanation
Indices: 103247514--103247548 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
103247504 TTGCTTTCGG
103247514 TTTTTA TTTTTA TTTTTA TTTTTTA TTTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTTTA -TTTTTA TTT
103247549 CAAAGAAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 15 0.54
7 13 0.46
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:103247530 original size:7 final size:7
Alignment explanation
Indices: 103247514--103247548 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
103247504 TTGCTTTCGG
103247514 TTTTTA-
1 TTTTTAT
103247520 TTTTTA-
1 TTTTTAT
103247526 TTTTTAT
1 TTTTTAT
103247533 TTTTTAT
1 TTTTTAT
103247540 TTTTTAT
1 TTTTTAT
103247547 TT
1 TT
103247549 CAAAGAAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 12 0.43
7 16 0.57
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTAT
Found at i:103247536 original size:13 final size:12
Alignment explanation
Indices: 103247514--103247548 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
103247504 TTGCTTTCGG
103247514 TTTTTATTTTTA
1 TTTTTATTTTTA
103247526 TTTTTATTTTTTA
1 TTTTTA-TTTTTA
103247539 TTTTTTATTT
1 -TTTTTATTT
103247549 CAAAGAAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 6 0.29
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTATTTTTA
Found at i:103247580 original size:13 final size:13
Alignment explanation
Indices: 103247562--103247592 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
103247552 AGAAACCACG
103247562 CTTTTGCCTTTTA
1 CTTTTGCCTTTTA
103247575 CTTTTGCCTTTTA
1 CTTTTGCCTTTTA
103247588 CTTTT
1 CTTTT
103247593 TAAGAGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.23, G:0.06, T:0.65
Consensus pattern (13 bp):
CTTTTGCCTTTTA
Found at i:103247877 original size:11 final size:10
Alignment explanation
Indices: 103247856--103247906 Score: 57
Period size: 11 Copynumber: 4.7 Consensus size: 10
103247846 CACAATAGTC
103247856 CTCTCACAATT
1 CTCTCA-AATT
103247867 CTCTCTAAATT
1 CTCTC-AAATT
*
103247878 CTTTCAAAATT
1 CTCTC-AAATT
103247889 CTCTCAAACTT
1 CTCTCAAA-TT
103247900 CTCTCAA
1 CTCTCAA
103247907 TTTTTGTCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 31 0.89
12 1 0.03
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.39
Consensus pattern (10 bp):
CTCTCAAATT
Found at i:103247891 original size:22 final size:22
Alignment explanation
Indices: 103247856--103247906 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
103247846 CACAATAGTC
*
103247856 CTCTCACAATTCTCTCTAAA-TT
1 CTCTCAAAATTCTCTC-AAACTT
*
103247878 CTTTCAAAATTCTCTCAAACTT
1 CTCTCAAAATTCTCTCAAACTT
103247900 CTCTCAA
1 CTCTCAA
103247907 TTTTTGTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.39
Consensus pattern (22 bp):
CTCTCAAAATTCTCTCAAACTT
Found at i:103247925 original size:21 final size:22
Alignment explanation
Indices: 103247892--103247935 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
103247882 CAAAATTCTC
103247892 TCAAACTTCTCTC-AATTTTTG
1 TCAAACTTCTCTCTAATTTTTG
* *
103247913 TCAAAGTTGTCTCTAATTTTTG
1 TCAAACTTCTCTCTAATTTTTG
103247935 T
1 T
103247936 AAAAAAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.23, C:0.18, G:0.09, T:0.50
Consensus pattern (22 bp):
TCAAACTTCTCTCTAATTTTTG
Found at i:103249617 original size:13 final size:13
Alignment explanation
Indices: 103249599--103249646 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 13
103249589 GACGACGCGG
103249599 GCCCATCAACAGC
1 GCCCATCAACAGC
*
103249612 GCCCATACAATCACCGG
1 GCCCAT-CAA-CA--GC
103249629 GCCCATCAACAGC
1 GCCCATCAACAGC
103249642 GCCCA
1 GCCCA
103249647 CACAGCCACC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 12 0.41
14 3 0.10
15 4 0.14
16 3 0.10
17 7 0.24
ACGTcount: A:0.29, C:0.46, G:0.17, T:0.08
Consensus pattern (13 bp):
GCCCATCAACAGC
Found at i:103249740 original size:18 final size:18
Alignment explanation
Indices: 103249717--103249759 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
103249707 TGCCAGGTGC
103249717 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
103249735 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
*
103249753 GTTTCCT
1 GTATCCT
103249760 TTTCCCAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.07, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:103249933 original size:34 final size:34
Alignment explanation
Indices: 103249891--103249957 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
103249881 GGAGCTCTTT
103249891 TTTTTACCATTCCCCATCACCTTATGAGATTCAC
1 TTTTTACCATTCCCCATCACCTTATGAGATTCAC
*
103249925 TTTTTACCATTCCCCATCACTTTATGAGATTCA
1 TTTTTACCATTCCCCATCACCTTATGAGATTCA
103249958 AACACCTCCG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.24, C:0.30, G:0.06, T:0.40
Consensus pattern (34 bp):
TTTTTACCATTCCCCATCACCTTATGAGATTCAC
Found at i:103250336 original size:38 final size:39
Alignment explanation
Indices: 103250248--103250337 Score: 103
Period size: 39 Copynumber: 2.3 Consensus size: 39
103250238 CTTTTTTTAA
* *
103250248 TTTTAATACAATAAATGTTATTTTAAATTAGCCAAGAAT
1 TTTTAATAAAATAAATGTTATTTTAAACTAGCCAAGAAT
* * * *
103250287 TTTTATTAAAATAAATGTTATTTT-GACTACGGCAA-TAT
1 TTTTAATAAAATAAATGTTATTTTAAACTA-GCCAAGAAT
103250325 TTTTAATAAAATA
1 TTTTAATAAAATA
103250338 TAAATAATAC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
38 17 0.40
39 26 0.60
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.43
Consensus pattern (39 bp):
TTTTAATAAAATAAATGTTATTTTAAACTAGCCAAGAAT
Found at i:103251913 original size:16 final size:17
Alignment explanation
Indices: 103251892--103251925 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
103251882 TAAAATAATC
103251892 AAAAACCCT-AACCCTA
1 AAAAACCCTAAACCCTA
103251908 AAAAACCCTAAACCCTA
1 AAAAACCCTAAACCCTA
103251925 A
1 A
103251926 TTTAATTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.53, C:0.35, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAAACCCTAAACCCTA
Found at i:103251996 original size:158 final size:158
Alignment explanation
Indices: 103251566--103252200 Score: 1010
Period size: 157 Copynumber: 4.0 Consensus size: 158
103251556 AAGACTTAAC
103251566 CCTAAAATAATCAAAAACCCTAACCCTAAAAAACCTTAAA-CCTAATTTAATTGATTTTTTTAAT
1 CCTAAAATAATCAAAAACCCTAACCCTAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTAAT
* *
103251630 TTCATAGTTAATTTAATTAATTAACCCTCAACTTTAATTAAATTAATTTTTTCCTTAAAAAATAC
66 TTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAATAC
103251695 TAAAACCTTAAACCACTAAAACCCTAAT
131 TAAAACCTTAAACCACTAAAACCCTAAT
* *
103251723 CCTAAAATAATCAAAAACCCTAACCCTAAAAAACTTTAAACCCTAATTTAATT-AATTTTTTAAT
1 CCTAAAATAATCAAAAACCCTAACCCTAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTAAT
*
103251787 TTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCATTAAAAAATAC
66 TTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAATAC
* *
103251852 TAAAATCC-TAAACCATTAAAACCCTACT
131 TAAAA-CCTTAAACCACTAAAACCCTAAT
* *
103251880 CTTAAAATAATCAAAAACCCTAACCCTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTAAT
1 CCTAAAATAATCAAAAACCCTAACCCTAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTAAT
* * *
103251945 TTCATATTTAATTTAATTAACTAACCCTCACCTCTAATTAAATTAATTTTTCCCTTAAAAAACAT
66 TTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTT-AAAAA-A-
103252010 TAAAACATTAAAACCTTAAACCACTAAAACCCTAAT
128 T---AC--TAAAACCTTAAACCACTAAAACCCTAAT
103252046 CCTAAAATAATCAAAAACCCTAACCCTAAAAAACCTTAAACCCTAATTTAATTGA-TTTTTTAAT
1 CCTAAAATAATCAAAAACCCTAACCCTAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTAAT
* *
103252110 TTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTCCCCTT-AAAAACAC
66 TTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAATAC
* *
103252174 TAAAACCCTAAACCATTAAAACCCTAA
131 TAAAACCTTAAACCACTAAAACCCTAA
103252201 ACCACTAAAC
Statistics
Matches: 440, Mismatches: 26, Indels: 25
0.90 0.05 0.05
Matches are distributed among these distances:
156 25 0.06
157 184 0.42
158 78 0.18
159 5 0.01
160 1 0.00
161 1 0.00
162 1 0.00
163 4 0.01
164 2 0.00
165 63 0.14
166 76 0.17
ACGTcount: A:0.44, C:0.21, G:0.01, T:0.34
Consensus pattern (158 bp):
CCTAAAATAATCAAAAACCCTAACCCTAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTAAT
TTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAATAC
TAAAACCTTAAACCACTAAAACCCTAAT
Found at i:103252079 original size:16 final size:17
Alignment explanation
Indices: 103252058--103252091 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
103252048 TAAAATAATC
103252058 AAAAACCCT-AACCCTA
1 AAAAACCCTAAACCCTA
*
103252074 AAAAACCTTAAACCCTA
1 AAAAACCCTAAACCCTA
103252091 A
1 A
103252092 TTTAATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAAACCCTAAACCCTA
Found at i:103252090 original size:23 final size:24
Alignment explanation
Indices: 103252035--103252091 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
103252025 TTAAACCACT
* *
103252035 AAAACCCTAATCCTAAAATAATCA
1 AAAACCCTAACCCTAAAATAACCA
*
103252059 AAAACCCTAACCCTAAAA-AACCT
1 AAAACCCTAACCCTAAAATAACCA
*
103252082 TAAACCCTAA
1 AAAACCCTAA
103252092 TTTAATTGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 12 0.41
24 17 0.59
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.18
Consensus pattern (24 bp):
AAAACCCTAACCCTAAAATAACCA
Found at i:103252147 original size:323 final size:313
Alignment explanation
Indices: 103251568--103252199 Score: 1066
Period size: 323 Copynumber: 2.0 Consensus size: 313
103251558 GACTTAACCC
*
103251568 TAAAATAATCAAAAACCCTAACCCTAAAAAACCTTAAACCTAATTTAATTGATTTTTTTAATTTC
1 TAAAATAATCAAAAACCCTAACCCTAAAAAACCCTAAACCTAATTTAATTGATTTTTTTAATTTC
* * *
103251633 ATAGTTAATTTAATTAATTAACCCTCAACTTTAATTAAATTAATTTTTTCCTTAAAAAATACTAA
66 ATAGTTAATTTAATTAACTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAATACTAA
*
103251698 AACCTTAAACCACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCCTAAAAAACTTTAAA
131 AACCTTAAACCACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCCTAAAAAACCTTAAA
103251763 CCCTAATTTAATTAATTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAA
196 CCCTAATTTAATTAATTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAA
* * *
103251828 ATTAATTTTTCCATTAAAAAATACTAAAATCCTAAACCATTAAAACCCTACTCT
261 ATTAATTTTCCCATT-AAAAACACTAAAACCCTAAACCATTAAAACCCTACTCT
103251882 TAAAATAATCAAAAACCCTAACCCTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTAATTT
1 TAAAATAATCAAAAACCCTAACCCTAAAAAACCCTAAA-CCTAATTTAATTGATTTTTTTAATTT
* *
103251947 CATATTTAATTTAATTAACTAACCCTCACCTCTAATTAAATTAATTTTTCCCTTAAAAAACATTA
65 CATAGTTAATTTAATTAACTAACCCTCAACTCTAATTAAATTAATTTTTCCCTT-AAAAA-A-T-
103252012 AAACATTAAAACCTTAAACCACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCCTAAAA
126 --AC--TAAAACCTTAAACCACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCCTAAAA
*
103252077 AACCTTAAACCCTAATTTAATTGATTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAAC
187 AACCTTAAACCCTAATTTAATTAATTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAAC
*
103252142 TCTAATTAAATTAATTTTCCCCTTAAAAACACTAAAACCCTAAACCATTAAAACCCTA
252 TCTAATTAAATTAATTTTCCCATTAAAAACACTAAAACCCTAAACCATTAAAACCCTA
103252200 AACCACTAAA
Statistics
Matches: 297, Mismatches: 12, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
314 37 0.12
315 75 0.25
316 5 0.02
317 1 0.00
318 1 0.00
321 2 0.01
322 32 0.11
323 144 0.48
ACGTcount: A:0.44, C:0.21, G:0.01, T:0.34
Consensus pattern (313 bp):
TAAAATAATCAAAAACCCTAACCCTAAAAAACCCTAAACCTAATTTAATTGATTTTTTTAATTTC
ATAGTTAATTTAATTAACTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAATACTAA
AACCTTAAACCACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCCTAAAAAACCTTAAA
CCCTAATTTAATTAATTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAA
ATTAATTTTCCCATTAAAAACACTAAAACCCTAAACCATTAAAACCCTACTCT
Found at i:103252195 original size:16 final size:16
Alignment explanation
Indices: 103252171--103252209 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
103252161 CCCTTAAAAA
103252171 CACTAAAACCCTAAAC
1 CACTAAAACCCTAAAC
*
103252187 CATTAAAACCCTAAAC
1 CACTAAAACCCTAAAC
103252203 CACTAAA
1 CACTAAA
103252210 CCCAACCCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.15
Consensus pattern (16 bp):
CACTAAAACCCTAAAC
Found at i:103254851 original size:37 final size:37
Alignment explanation
Indices: 103254801--103254891 Score: 130
Period size: 37 Copynumber: 2.5 Consensus size: 37
103254791 TTATTGTTGA
* *
103254801 GGCGTGTTATCGGTTGGATTAGCTCTTAGGAGTGTTT
1 GGCGTGTTATCGGTTGGATTAGCTCTTAGAAGCGTTT
*
103254838 GGCGTGTTATCGGTTGGATTAGCTCTTATAAGCGTTT
1 GGCGTGTTATCGGTTGGATTAGCTCTTAGAAGCGTTT
* *
103254875 GACATGTT-TCGGTTGGA
1 GGCGTGTTATCGGTTGGA
103254892 CTACTATGGT
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 9 0.18
37 40 0.82
ACGTcount: A:0.15, C:0.12, G:0.33, T:0.40
Consensus pattern (37 bp):
GGCGTGTTATCGGTTGGATTAGCTCTTAGAAGCGTTT
Found at i:103260098 original size:33 final size:32
Alignment explanation
Indices: 103260051--103260113 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
103260041 ACAATTGTAA
*
103260051 TATTTTATTTAAATT-AGTAGATATTTATTATT
1 TATTTTATTAAAATTAAG-AGATATTTATTATT
103260083 TATTATTATTAAAATTAAGAGATATTTATTA
1 TATT-TTATTAAAATTAAGAGATATTTATTA
103260114 ATTAAATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 4 0.14
33 22 0.79
34 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (32 bp):
TATTTTATTAAAATTAAGAGATATTTATTATT
Found at i:103260788 original size:17 final size:18
Alignment explanation
Indices: 103260766--103260799 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
103260756 TAAATGAGTT
103260766 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
103260783 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
103260800 AATAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:103261300 original size:21 final size:19
Alignment explanation
Indices: 103261274--103261312 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
103261264 CACGAATAGC
103261274 AGGGAAAGAAAGAAGGAAAAA
1 AGGGAAAGAAA-AA-GAAAAA
103261295 AGGGAAAGAAAAAGAAAA
1 AGGGAAAGAAAAAGAAAA
103261313 GGAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 2 0.11
21 11 0.61
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (19 bp):
AGGGAAAGAAAAAGAAAAA
Found at i:103262105 original size:6 final size:6
Alignment explanation
Indices: 103262094--103262118 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
103262084 TCTGTACCTG
103262094 ACTGTT ACTGTT ACTGTT ACTGTT A
1 ACTGTT ACTGTT ACTGTT ACTGTT A
103262119 TCCTTACGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (6 bp):
ACTGTT
Found at i:103263661 original size:22 final size:25
Alignment explanation
Indices: 103263634--103263678 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
103263624 GTGAATTGAA
103263634 AATTG-ATTGAAAA-GTG-GAAAAT
1 AATTGAATTGAAAATGTGAGAAAAT
103263656 AATTGAATTGAAAATGTGAGAAA
1 AATTGAATTGAAAATGTGAGAAA
103263679 TTGTGACTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 8 0.40
24 3 0.15
25 4 0.20
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (25 bp):
AATTGAATTGAAAATGTGAGAAAAT
Found at i:103263859 original size:23 final size:23
Alignment explanation
Indices: 103263798--103263885 Score: 92
Period size: 23 Copynumber: 4.0 Consensus size: 23
103263788 GCTTTATCGA
* * *
103263798 TCAGGCACTTTATATGTCGTATA
1 TCAGGCACCTTATGTGTCGTATT
*
103263821 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
*
103263844 TCAGGCACCTTGTGTGT--TATT
1 TCAGGCACCTTATGTGTCGTATT
* *
103263865 TCAGACA-CTGATGTGTCGTAT
1 TCAGGCACCTTATGTGTCGTAT
103263886 ACTGATCAAG
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
20 7 0.12
21 10 0.18
22 3 0.05
23 36 0.64
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:103266369 original size:18 final size:18
Alignment explanation
Indices: 103266346--103266380 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
103266336 AATATATATT
103266346 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
103266364 AACCCAATTACCCAACC
1 AACCCAAGTACCCAACC
103266381 TAATCATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.49, G:0.03, T:0.09
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:103266479 original size:9 final size:9
Alignment explanation
Indices: 103266465--103266532 Score: 73
Period size: 9 Copynumber: 7.6 Consensus size: 9
103266455 TTTATACAAA
103266465 TAATTCGGT
1 TAATTCGGT
*
103266474 TAATTCAGT
1 TAATTCGGT
* *
103266483 TAATTTGGG
1 TAATTCGGT
* *
103266492 TAATTTGGG
1 TAATTCGGT
*
103266501 TAATTCGGG
1 TAATTCGGT
*
103266510 TAATTCGAT
1 TAATTCGGT
103266519 TAATTCGGT
1 TAATTCGGT
103266528 TAATT
1 TAATT
103266533 TTATACTTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:103266506 original size:36 final size:36
Alignment explanation
Indices: 103266465--103266533 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
103266455 TTTATACAAA
* *
103266465 TAATTCGGTTAATTC-AGTTAATTTGGGTAATTTGGG
1 TAATTCGGGTAATTCGA-TTAATTCGGGTAATTTGGG
*
103266501 TAATTCGGGTAATTCGATTAATTCGGTTAATTT
1 TAATTCGGGTAATTCGATTAATTCGGGTAATTT
103266534 TATACTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
36 28 0.97
37 1 0.03
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.45
Consensus pattern (36 bp):
TAATTCGGGTAATTCGATTAATTCGGGTAATTTGGG
Found at i:103269551 original size:40 final size:40
Alignment explanation
Indices: 103269452--103269590 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 40
103269442 TTGAAATTAT
* * * *
103269452 CAAAATATAAACAGGGGAACGTATGTGCAATCAAGGGCAC
1 CAAAATACAAACAGGGGCACGTATGTGCAATCAGGGGTAC
* * * ** *
103269492 CGAAGTACATACAATGGCACGTATGTGTAATCAGGGGTAC
1 CAAAATACAAACAGGGGCACGTATGTGCAATCAGGGGTAC
*
103269532 CAAAATACAAACAGGGGCACGTATGTACAATCAGGGGTAC
1 CAAAATACAAACAGGGGCACGTATGTGCAATCAGGGGTAC
* * *
103269572 TAAAGTACAAATAGGGGCA
1 CAAAATACAAACAGGGGCA
103269591 TAATTTACAT
Statistics
Matches: 79, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (40 bp):
CAAAATACAAACAGGGGCACGTATGTGCAATCAGGGGTAC
Found at i:103269560 original size:20 final size:20
Alignment explanation
Indices: 103269523--103269590 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
103269513 TATGTGTAAT
* * *
103269523 CAGGGGTACCAAAATACAAA
1 CAGGGGCACTAAAGTACAAA
* *
103269543 CAGGGGCACGT-ATGTACAAT
1 CAGGGGCAC-TAAAGTACAAA
*
103269563 CAGGGGTACTAAAGTACAAA
1 CAGGGGCACTAAAGTACAAA
*
103269583 TAGGGGCA
1 CAGGGGCA
103269591 TAATTTACAT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
19 1 0.03
20 35 0.97
ACGTcount: A:0.40, C:0.18, G:0.28, T:0.15
Consensus pattern (20 bp):
CAGGGGCACTAAAGTACAAA
Found at i:103291397 original size:20 final size:21
Alignment explanation
Indices: 103291344--103291399 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
103291334 TAGTGGCACG
103291344 TATGTACAATCAGGGGTATCA
1 TATGTACAATCAGGGGTATCA
*
103291365 -AAGTAC-ATACAGGGGTAT-A
1 TATGTACAAT-CAGGGGTATCA
*
103291384 TATGTGCAATCAGGGG
1 TATGTACAATCAGGGG
103291400 CACTGAAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 3 0.10
20 24 0.83
21 2 0.07
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (21 bp):
TATGTACAATCAGGGGTATCA
Found at i:103291399 original size:40 final size:40
Alignment explanation
Indices: 103291338--103291442 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 40
103291328 TATAAATAGT
* *
103291338 GGCACGTATGTACAATCAGGGGTA-TCAAAGTACATACAGG
1 GGCACATATGTGCAATCAGGGGTACT-AAAGTACATACAGG
* * * * * *
103291378 GGTATATATGTGCAATCAGGGGCACTGAAGTACATATAGT
1 GGCACATATGTGCAATCAGGGGTACTAAAGTACATACAGG
*
103291418 GGCACGTATGTGCAATCAGGGGTAC
1 GGCACATATGTGCAATCAGGGGTAC
103291443 CGAAATACAA
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
40 51 0.98
41 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (40 bp):
GGCACATATGTGCAATCAGGGGTACTAAAGTACATACAGG
Found at i:103297232 original size:14 final size:13
Alignment explanation
Indices: 103297203--103297237 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
103297193 GGGAAGGAAG
*
103297203 AAAGAAAAAGAGA
1 AAAGAAAAAGAAA
103297216 AAAGAAAGAAGAAA
1 AAAGAAA-AAGAAA
103297230 AAAGAAAA
1 AAAGAAAA
103297238 TTAAAGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAGAAA
Found at i:103297983 original size:41 final size:41
Alignment explanation
Indices: 103297934--103298017 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
103297924 AGCATTATTG
103297934 TGTTTTATGAGTATTGAAATGAATCAAAATGTATATTGTAT
1 TGTTTTATGAGTATTGAAATGAATCAAAATGTATATTGTAT
103297975 TGTTTTATGAGTATTGAAATGAATCAAAATGTATATTGTAT
1 TGTTTTATGAGTATTGAAATGAATCAAAATGTATATTGTAT
103298016 TG
1 TG
103298018 CAACTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.44
Consensus pattern (41 bp):
TGTTTTATGAGTATTGAAATGAATCAAAATGTATATTGTAT
Found at i:103302691 original size:46 final size:47
Alignment explanation
Indices: 103302624--103302728 Score: 187
Period size: 46 Copynumber: 2.3 Consensus size: 47
103302614 AAATTAGACA
103302624 TTCGATCAATGTAAAGAAAAGAGTATTCCACTGATTCTTTTGGA-CT
1 TTCGATCAATGTAAAGAAAAGAGTATTCCACTGATTCTTTTGGACCT
103302670 TTCGATCAATGTAAAGAAAAGAGTATTCCACTGATTCTTTTGGACCT
1 TTCGATCAATGTAAAGAAAAGAGTATTCCACTGATTCTTTTGGACCT
*
103302717 AT-GATCAATGTA
1 TTCGATCAATGTA
103302729 GGGAAGTTTT
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
46 54 0.95
47 3 0.05
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34
Consensus pattern (47 bp):
TTCGATCAATGTAAAGAAAAGAGTATTCCACTGATTCTTTTGGACCT
Found at i:103304734 original size:28 final size:29
Alignment explanation
Indices: 103304703--103304765 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
103304693 TTTATTCAGT
103304703 TTTTTAAGAACTGTTTT-AT-TATTATTTA
1 TTTTTAAG-ACTGTTTTCATATATTATTTA
** *
103304731 -TTTTAAGTTTGTTTTCTTATATTATTTA
1 TTTTTAAGACTGTTTTCATATATTATTTA
103304759 TTTTTAA
1 TTTTTAA
103304766 AATCATTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
26 6 0.21
27 8 0.28
28 9 0.31
29 6 0.21
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.65
Consensus pattern (29 bp):
TTTTTAAGACTGTTTTCATATATTATTTA
Found at i:103310514 original size:26 final size:25
Alignment explanation
Indices: 103310466--103310552 Score: 75
Period size: 26 Copynumber: 3.3 Consensus size: 25
103310456 TATTTTTTTG
*
103310466 TATTATTTACTTTAATTTATTTTACA
1 TATTATTTA-TTTAAATTATTTTACA
* *
103310492 TATTATTTATTTGAAATTGTTTTAGA
1 TATTATTTATTT-AAATTATTTTACA
* *
103310518 TGTTATTTTTATTTCAAATTATTTTATA
1 TATTA--TTTATTT-AAATTATTTTACA
*
103310546 TTTTATT
1 TATTATT
103310553 CATGTCAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
25 3 0.06
26 25 0.50
28 22 0.44
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (25 bp):
TATTATTTATTTAAATTATTTTACA
Found at i:103310536 original size:28 final size:29
Alignment explanation
Indices: 103310492--103310552 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
103310482 TTATTTTACA
* *
103310492 TATTATTTATTTGAAATTGTTTTAGATGT
1 TATTATTTATTTCAAATTATTTTAGATGT
* *
103310521 TATT-TTTATTTCAAATTATTTTATATTT
1 TATTATTTATTTCAAATTATTTTAGATGT
103310549 TATT
1 TATT
103310553 CATGTCAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 24 0.86
29 4 0.14
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.64
Consensus pattern (29 bp):
TATTATTTATTTCAAATTATTTTAGATGT
Found at i:103311929 original size:19 final size:21
Alignment explanation
Indices: 103311907--103311955 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
103311897 ATACTATAAG
103311907 ATTATTTTATT-ATA-TATAT
1 ATTATTTTATTCATATTATAT
* *
103311926 ATTATTATTCTTCATATTATCT
1 ATTATT-TTATTCATATTATAT
103311948 ATTATTTT
1 ATTATTTT
103311956 TCCAATTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 6 0.24
20 4 0.16
21 5 0.20
22 10 0.40
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTATTTTATTCATATTATAT
Found at i:103312306 original size:28 final size:28
Alignment explanation
Indices: 103312253--103312306 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
103312243 TCATTATAGA
* *
103312253 TATAAATTCTTTTACAAACTTTATATTC
1 TATAAATTATTTTACAAACTTAATATTC
*
103312281 TATACATTATTTTACTAAAC-TAATAT
1 TATAAATTATTTTAC-AAACTTAATAT
103312307 CTTTTGTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 18 0.82
29 4 0.18
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (28 bp):
TATAAATTATTTTACAAACTTAATATTC
Found at i:103316220 original size:14 final size:14
Alignment explanation
Indices: 103316201--103316230 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
103316191 AAGATATTCT
103316201 TTTTCTAAATAAAA
1 TTTTCTAAATAAAA
*
103316215 TTTTCTAAATGAAA
1 TTTTCTAAATAAAA
103316229 TT
1 TT
103316231 GAACCAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAA
Found at i:103316288 original size:15 final size:15
Alignment explanation
Indices: 103316252--103316301 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
103316242 GATATTCTTT
103316252 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
103316266 TTTGCATCTCATGGCA
1 TTTGCATCTCAT-GCA
*
103316282 TTT-CATCACAT-CA
1 TTTGCATCTCATGCA
103316295 TTTGCAT
1 TTTGCAT
103316302 ACAAAATTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:103324436 original size:119 final size:119
Alignment explanation
Indices: 103324271--103324749 Score: 789
Period size: 119 Copynumber: 4.0 Consensus size: 119
103324261 TAGGCCGCAG
*
103324271 TATAGCAGATCT-AGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGT
1 TATAGCAGATCTAAAC-TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGT
103324335 GTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
65 GTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
*
103324390 TATAGCAGATCTAAACTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* *
103324455 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAGA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
*
103324509 TATAGCAAATCTAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* *
103324574 TTTACAAGGAACAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGACA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA-A-A
* * * **
103324630 CATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCCAGATCCAAGATGATTTGACATTCTTGT
1 TATAGCAGATCTAAACTTCAGATGTTTATACTGAAG-CAGATCCAAGATGATTTGGTATTCTTGT
* *
103324695 GTTTACAAGAAACAAATCGAGGACATAGTAGATTTGACTCTCAGATGTTATCAAA
65 GTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
103324750 CAGACTCCAA
Statistics
Matches: 336, Mismatches: 20, Indels: 7
0.93 0.06 0.02
Matches are distributed among these distances:
119 224 0.67
120 3 0.01
121 34 0.10
122 75 0.22
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (119 bp):
TATAGCAGATCTAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
Found at i:103324898 original size:83 final size:84
Alignment explanation
Indices: 103324667--103324900 Score: 357
Period size: 84 Copynumber: 2.8 Consensus size: 84
103324657 ATACTGAAGC
103324667 CAGA-TCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGTAGATTTG
1 CAGACTCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGTAGATTTG
103324731 ACTCTCAGATGTTATCAAA
66 ACTCTCAGATGTTATCAAA
103324750 CAGACTCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGTAGATTTG
1 CAGACTCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGTAGATTTG
* *
103324815 ACTCTCAGATGTTCTTAAA
66 ACTCTCAGATGTTATCAAA
* * * * * * *
103324834 CAGACTCC-AGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCT-GATTT
1 CAGACTCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAGGACATAG-TAGATTT
103324897 GACT
65 GACT
103324901 TTCACGTGTT
Statistics
Matches: 140, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
83 54 0.39
84 86 0.61
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (84 bp):
CAGACTCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGTAGATTTG
ACTCTCAGATGTTATCAAA
Found at i:103326553 original size:15 final size:15
Alignment explanation
Indices: 103326529--103326563 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
103326519 AATTTAGTCC
*
103326529 TATATTTATTCTATA
1 TATATATATTCTATA
*
103326544 TATATATATTTTATA
1 TATATATATTCTATA
103326559 TATAT
1 TATAT
103326564 TGATATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (15 bp):
TATATATATTCTATA
Found at i:103327001 original size:28 final size:28
Alignment explanation
Indices: 103326948--103327001 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
103326938 TCATTATAGA
* *
103326948 TATAAATTCTTTTACAAACTTTATATTC
1 TATAAATTATTTTACAAACTTAATATTC
*
103326976 TATACATTATTTTACTAAAC-TAATAT
1 TATAAATTATTTTAC-AAACTTAATAT
103327002 CTTTGTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 18 0.82
29 4 0.18
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (28 bp):
TATAAATTATTTTACAAACTTAATATTC
Found at i:103332627 original size:26 final size:25
Alignment explanation
Indices: 103332597--103332648 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
103332587 TTTGATAAAT
103332597 TATAATAAAA-ATAATTTATGTTTTTA
1 TATAATAAAATA-AATTTAT-TTTTTA
*
103332623 TATAATTAAATAAATTTATTTTTTA
1 TATAATAAAATAAATTTATTTTTTA
103332648 T
1 T
103332649 CTAGAATGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 16 0.67
27 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
TATAATAAAATAAATTTATTTTTTA
Found at i:103338563 original size:45 final size:45
Alignment explanation
Indices: 103338509--103338819 Score: 300
Period size: 45 Copynumber: 7.5 Consensus size: 45
103338499 AAGAGGAAGT
** * *
103338509 GCAGCCCGAGACCTTAACAGACAAGGAAGAGCAAGAGAAGGCGCA
1 GCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAGAAGGCGCA
103338554 GCAGCCCGAGAGTTTACCAGACAAGGAAG-G---GA-AA---G-A
1 GCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAGAAGGCGCA
* * *
103338590 TGC-GCCCAAGAGTTTACCGGACAAGGAAGAGAAAGAGGAGGCGCA
1 -GCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAGAAGGCGCA
*
103338635 GCAGCCCGAGAGTTTACCAGACAAGGAAGAG-AA-AG-A-----T
1 GCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAGAAGGCGCA
* *
103338672 GC-GCCCAAGAGTTTACCAGACAAGGAAGAGAAAGAGGAGGCGCA
1 GCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAGAAGGCGCA
103338716 GCAGCCCGAGAGTTTACCAGACAAGGAAGAG-AA-AG-A-----A
1 GCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAGAAGGCGCA
* * *
103338753 GC-GCCCAAGAGTTTACCAGACAAGGAAGAGAACGAGGAGGCGCA
1 GCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAGAAGGCGCA
103338797 GCAGCCCGAGAGTTTACCAGACA
1 GCAGCCCGAGAGTTTACCAGACA
103338820 GGGCTGCAAA
Statistics
Matches: 222, Mismatches: 15, Indels: 58
0.75 0.05 0.20
Matches are distributed among these distances:
36 79 0.36
37 12 0.05
38 4 0.02
39 2 0.01
40 4 0.02
41 3 0.01
42 2 0.01
43 4 0.02
44 13 0.06
45 99 0.45
ACGTcount: A:0.38, C:0.22, G:0.32, T:0.08
Consensus pattern (45 bp):
GCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAGAAGGCGCA
Found at i:103338602 original size:36 final size:36
Alignment explanation
Indices: 103338557--103338780 Score: 196
Period size: 36 Copynumber: 5.7 Consensus size: 36
103338547 AGGCGCAGCA
* *
103338557 GCCCGAGAGTTTACCAGACAAGGAAGGGAAAGATGC
1 GCCCAAGAGTTTACCAGACAAGGAAGGGAAAGAAGC
* *
103338593 GCCCAAGAGTTTACCGGACAAGGAAGAGAAAGAGGAGGCGCAGC
1 GCCCAAGAGTTTACCAGACAAGGAAG-GGAA-A-GA-----AGC
* * *
103338637 AGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGATGC
1 -GCCCAAGAGTTTACCAGACAAGGAAGGGAAAGAAGC
*
103338674 GCCCAAGAGTTTACCAGACAAGGAAGAGAAAGAGGAGGCGCAGC
1 GCCCAAGAGTTTACCAGACAAGGAAG-GGAA-A-GA-----AGC
* *
103338718 AGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAAGC
1 -GCCCAAGAGTTTACCAGACAAGGAAGGGAAAGAAGC
103338755 GCCCAAGAGTTTACCAGACAAGGAAG
1 GCCCAAGAGTTTACCAGACAAGGAAG
103338781 AGAACGAGGA
Statistics
Matches: 153, Mismatches: 17, Indels: 36
0.74 0.08 0.17
Matches are distributed among these distances:
36 74 0.48
37 10 0.07
38 2 0.01
39 4 0.03
42 4 0.03
43 2 0.01
44 8 0.05
45 49 0.32
ACGTcount: A:0.39, C:0.20, G:0.32, T:0.09
Consensus pattern (36 bp):
GCCCAAGAGTTTACCAGACAAGGAAGGGAAAGAAGC
Found at i:103338615 original size:81 final size:81
Alignment explanation
Indices: 103338526--103338819 Score: 534
Period size: 81 Copynumber: 3.6 Consensus size: 81
103338516 GAGACCTTAA
* * *
103338526 CAGACAAGGAAGAGCAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGGAAGGGAAAGAT
1 CAGACAAGGAAGAGAAAGAGGAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAT
103338591 GCGCCCAAGAGTTTAC
66 GCGCCCAAGAGTTTAC
*
103338607 CGGACAAGGAAGAGAAAGAGGAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAT
1 CAGACAAGGAAGAGAAAGAGGAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAT
103338672 GCGCCCAAGAGTTTAC
66 GCGCCCAAGAGTTTAC
*
103338688 CAGACAAGGAAGAGAAAGAGGAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAA
1 CAGACAAGGAAGAGAAAGAGGAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAT
103338753 GCGCCCAAGAGTTTAC
66 GCGCCCAAGAGTTTAC
*
103338769 CAGACAAGGAAGAGAACGAGGAGGCGCAGCAGCCCGAGAGTTTACCAGACA
1 CAGACAAGGAAGAGAAAGAGGAGGCGCAGCAGCCCGAGAGTTTACCAGACA
103338820 GGGCTGCAAA
Statistics
Matches: 206, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 206 1.00
ACGTcount: A:0.39, C:0.21, G:0.33, T:0.08
Consensus pattern (81 bp):
CAGACAAGGAAGAGAAAGAGGAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGGAAGAGAAAGAT
GCGCCCAAGAGTTTAC
Found at i:103342433 original size:40 final size:40
Alignment explanation
Indices: 103342389--103342504 Score: 135
Period size: 40 Copynumber: 2.9 Consensus size: 40
103342379 TTAAGTTACC
* *
103342389 ATAGTGAATCAGGACCAAATTCTATCCACTTTATATAT-TT
1 ATAGTGAATCAGGAACAAATCCTATCCACTTTA-ATATCTT
* * *
103342429 ATAGTGAATCAGGAATAAATCCTATTCACTTTAATTTCTT
1 ATAGTGAATCAGGAACAAATCCTATCCACTTTAATATCTT
* * *
103342469 TTAGTGAATCAGGAATAAATCCTATTCACTCTTAAT
1 ATAGTGAATCAGGAACAAATCCTATCCACT-TTAAT
103342505 TCTCGAGAAG
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.04
40 60 0.88
41 5 0.07
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (40 bp):
ATAGTGAATCAGGAACAAATCCTATCCACTTTAATATCTT
Found at i:103343993 original size:8 final size:8
Alignment explanation
Indices: 103343980--103344009 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
103343970 TACTTAGTGT
103343980 TTATTTTA
1 TTATTTTA
103343988 TTATTTTA
1 TTATTTTA
103343996 TTATTTTA
1 TTATTTTA
103344004 TTATTT
1 TTATTT
103344010 CTTTGTGGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTATTTTA
Found at i:103344793 original size:21 final size:21
Alignment explanation
Indices: 103344769--103344813 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
103344759 TTGAATATAA
103344769 GGGAACACGCCCGTGTGGCCT
1 GGGAACACGCCCGTGTGGCCT
* *
103344790 GGG-ACATGTCCGTGTGGCCT
1 GGGAACACGCCCGTGTGGCCT
103344810 GGGA
1 GGGA
103344814 CATGGCTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.13, C:0.27, G:0.42, T:0.18
Consensus pattern (21 bp):
GGGAACACGCCCGTGTGGCCT
Found at i:103344804 original size:20 final size:20
Alignment explanation
Indices: 103344779--103344817 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
103344769 GGGAACACGC
103344779 CCGTGTGGCCTGGGACATGT
1 CCGTGTGGCCTGGGACATGT
103344799 CCGTGTGGCCTGGGACATG
1 CCGTGTGGCCTGGGACATG
103344818 GCTGTGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.41, T:0.23
Consensus pattern (20 bp):
CCGTGTGGCCTGGGACATGT
Found at i:103345776 original size:37 final size:39
Alignment explanation
Indices: 103345682--103345778 Score: 101
Period size: 40 Copynumber: 2.5 Consensus size: 39
103345672 CACACCAGAA
*
103345682 TGGCGACCAACGCCTCATCGGATAGTTCGAAGCAAATAAG
1 TGGCGACCAACGCCTCATCGGATAGTCCGAAGC-AATAAG
** * * *
103345722 TGATGACCAATGTCTCATCGGCTAAG-CCGAAGC-A-AAG
1 TGGCGACCAACGCCTCATCGGAT-AGTCCGAAGCAATAAG
103345759 TGGCGACCAACGCCTCATCG
1 TGGCGACCAACGCCTCATCG
103345779 AATCTATCCG
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
37 19 0.41
38 1 0.02
40 24 0.52
41 2 0.04
ACGTcount: A:0.30, C:0.28, G:0.25, T:0.18
Consensus pattern (39 bp):
TGGCGACCAACGCCTCATCGGATAGTCCGAAGCAATAAG
Found at i:103346744 original size:18 final size:19
Alignment explanation
Indices: 103346721--103346768 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
103346711 ATTGTCTCGT
* *
103346721 TTTCTTTTTCT-TTTCTCC
1 TTTCTTTCTCTCTTTCACC
*
103346739 TTTCTTTCTCTCTTTCACG
1 TTTCTTTCTCTCTTTCACC
103346758 TTTCTTTCTCT
1 TTTCTTTCTCT
103346769 GTAACTTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTCTTTCTCTCTTTCACC
Found at i:103346983 original size:13 final size:14
Alignment explanation
Indices: 103346952--103346984 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
103346942 AACATAATAT
103346952 TAAATAATTATTAA
1 TAAATAATTATTAA
103346966 T-AATAATTA-TAA
1 TAAATAATTATTAA
103346978 TAAATAA
1 TAAATAA
103346985 ATATCTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 13 0.72
14 1 0.06
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAATAATTATTAA
Found at i:103355096 original size:20 final size:20
Alignment explanation
Indices: 103355068--103355114 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
103355058 AGGGGCACAC
* *
103355068 GCCCATGTGGCTTGGGACAT
1 GCCCGTGTGGCCTGGGACAT
103355088 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAT
*
103355108 GGCCGTG
1 GCCCGTG
103355115 GGACTAACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.11, C:0.28, G:0.40, T:0.21
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGGACAT
Found at i:103362867 original size:20 final size:20
Alignment explanation
Indices: 103362844--103362883 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
103362834 TCCTGCTTTC
* *
103362844 CTTTCATTTTCTTTTCTATT
1 CTTTAATTTTCTTCTCTATT
103362864 CTTTAATTTTCTTCTCTATT
1 CTTTAATTTTCTTCTCTATT
103362884 TTGATCAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.20, G:0.00, T:0.68
Consensus pattern (20 bp):
CTTTAATTTTCTTCTCTATT
Found at i:103363576 original size:21 final size:21
Alignment explanation
Indices: 103363550--103363592 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
103363540 TTGCTCAGGG
103363550 GATTGAATAAGGAGGGGATAA
1 GATTGAATAAGGAGGGGATAA
103363571 GATTGAATAAGGAGGGGATAA
1 GATTGAATAAGGAGGGGATAA
103363592 G
1 G
103363593 GGAGAGGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.40, T:0.19
Consensus pattern (21 bp):
GATTGAATAAGGAGGGGATAA
Found at i:103364600 original size:8 final size:8
Alignment explanation
Indices: 103364587--103364618 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
103364577 CTAGATCGGC
103364587 AAAAGCCG
1 AAAAGCCG
103364595 AAAAGCCG
1 AAAAGCCG
*
103364603 AAATGCCG
1 AAAAGCCG
103364611 AAAAGCCG
1 AAAAGCCG
103364619 GTATTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:103365071 original size:27 final size:26
Alignment explanation
Indices: 103365031--103365133 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 26
103365021 AGGAAGCGTC
*
103365031 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTAAT
**
103365058 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTAAT
*
103365085 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCT-AAT
* *
103365113 CTGGTGACTCTGTCACATTAT
1 CTGGTGGCTCTGCCACATTAT
103365134 TTGTTTTGGC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
26 2 0.03
27 47 0.71
28 17 0.26
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTAAT
Found at i:103372717 original size:27 final size:26
Alignment explanation
Indices: 103372677--103372761 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 26
103372667 AGGAAGCGTC
*
103372677 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCA-AATTATCTGAT
*
103372704 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCA-AATTATCTG-AT
* * * *
103372732 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCAAATTATCTGAT
103372758 CTGG
1 CTGG
103372762 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.10
27 30 0.60
28 15 0.30
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCAAATTATCTGAT
Found at i:103372742 original size:28 final size:27
Alignment explanation
Indices: 103372694--103372761 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
103372684 CTATGCCATA
*
103372694 ATTATCTG-ATCTGGTGGCTCTGCCAC
1 ATTATCTGTATCTGGTGACTCTGCCAC
*
103372720 GATTATCTGTATCTGGTGACTCTGTCAC
1 -ATTATCTGTATCTGGTGACTCTGCCAC
103372748 ATTATCTGT-TCTGG
1 ATTATCTGTATCTGG
103372762 CAGCCATGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 5 0.13
27 17 0.45
28 16 0.42
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (27 bp):
ATTATCTGTATCTGGTGACTCTGCCAC
Found at i:103373980 original size:27 final size:26
Alignment explanation
Indices: 103373943--103374047 Score: 147
Period size: 27 Copynumber: 3.9 Consensus size: 26
103373933 ACAAGGTTGC
103373943 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
103373969 CAGATAATTGTGGCATAGCCACCAGGA
1 CAGAT-ATTGTGGCAGAGCCACCAGAA
*
103373996 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAA
*
103374023 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
103374048 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
26 7 0.10
27 61 0.87
28 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:103374014 original size:54 final size:53
Alignment explanation
Indices: 103373943--103374050 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 53
103373933 ACAAGGTTGC
103373943 CAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAGGA
*
103373996 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATAT-TGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAGGA
103374050 C
1 C
103374051 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 7 0.13
54 46 0.87
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (53 bp):
CAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAGGA
Found at i:103385436 original size:23 final size:23
Alignment explanation
Indices: 103385391--103385436 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
103385381 AAATCCTAAT
* *
103385391 TTTCCTTTCTTTTTCTTTCTTTC
1 TTTCCCTTCTTTGTCTTTCTTTC
103385414 TTTCCCTTCTTTGT-TTTCGTTTC
1 TTTCCCTTCTTTGTCTTTC-TTTC
103385437 AACTTCTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.00, C:0.26, G:0.04, T:0.70
Consensus pattern (23 bp):
TTTCCCTTCTTTGTCTTTCTTTC
Found at i:103388077 original size:49 final size:49
Alignment explanation
Indices: 103388005--103388102 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
103387995 GCCTAACTCT
*
103388005 TAAAAAAGAGAATTCATATAGGAAATTCTTTAAAGCTCCAAAATAAAGC
1 TAAAAAAGAGAATTCATATAGGAAATTCTTTAAAGCACCAAAATAAAGC
*
103388054 TAAAAATGAGAATTCATATAGGAAATTCTTTAAAGCACCAAAATAAAGC
1 TAAAAAAGAGAATTCATATAGGAAATTCTTTAAAGCACCAAAATAAAGC
103388103 GAAAGCGAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.24
Consensus pattern (49 bp):
TAAAAAAGAGAATTCATATAGGAAATTCTTTAAAGCACCAAAATAAAGC
Found at i:103389359 original size:14 final size:14
Alignment explanation
Indices: 103389340--103389380 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
103389330 TTGTTTTATT
*
103389340 GAAAATGATTTCCA
1 GAAAATGATTTACA
**
103389354 GAAAATGATTTATG
1 GAAAATGATTTACA
103389368 GAAAATGATTTAC
1 GAAAATGATTTAC
103389381 TTTTCTGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.32
Consensus pattern (14 bp):
GAAAATGATTTACA
Found at i:103389499 original size:27 final size:27
Alignment explanation
Indices: 103389468--103389524 Score: 107
Period size: 26 Copynumber: 2.1 Consensus size: 27
103389458 AAAAATATTT
103389468 CATAAAAGTTGTTTTCAATTAAACAAA
1 CATAAAAGTTGTTTTCAATTAAACAAA
103389495 CAT-AAAGTTGTTTTCAATTAAACAAA
1 CATAAAAGTTGTTTTCAATTAAACAAA
103389521 CATA
1 CATA
103389525 CATTTGAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.33
Consensus pattern (27 bp):
CATAAAAGTTGTTTTCAATTAAACAAA
Found at i:103389885 original size:15 final size:15
Alignment explanation
Indices: 103389865--103389916 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
103389855 ACTATAAAAC
103389865 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
103389880 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
103389899 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
103389914 ATT
1 ATT
103389917 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:103390026 original size:20 final size:22
Alignment explanation
Indices: 103390004--103390047 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
103389994 TTGAAATATT
103390004 AAATA-ATTTATTAAAATAATA
1 AAATATATTTATTAAAATAATA
* *
103390025 AAATATATTTATTATATTAATA
1 AAATATATTTATTAAAATAATA
103390047 A
1 A
103390048 TTTATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AAATATATTTATTAAAATAATA
Found at i:103390052 original size:16 final size:17
Alignment explanation
Indices: 103390026--103390057 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
103390016 AAAATAATAA
103390026 AATATATTTATTATATT
1 AATATATTTATTATATT
103390043 AATA-ATTTATTATAT
1 AATATATTTATTATAT
103390058 GACTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATATATTTATTATATT
Found at i:103391017 original size:13 final size:13
Alignment explanation
Indices: 103390999--103391024 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103390989 TTGTGTGTTC
103390999 TTTATTTTATTTT
1 TTTATTTTATTTT
103391012 TTTATTTTATTTT
1 TTTATTTTATTTT
103391025 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:103393449 original size:17 final size:16
Alignment explanation
Indices: 103393429--103393460 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
103393419 TTCATAAGTA
103393429 TATATCAATCATTTCAT
1 TATATCAAT-ATTTCAT
103393446 TATATCAATATTTCA
1 TATATCAATATTTCA
103393461 GGCTTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.47
Consensus pattern (16 bp):
TATATCAATATTTCAT
Found at i:103394058 original size:46 final size:46
Alignment explanation
Indices: 103393747--103394060 Score: 384
Period size: 46 Copynumber: 6.8 Consensus size: 46
103393737 TTCGACATGA
* * * *
103393747 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGT
** * *
103393793 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGTTACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* **
103393839 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTC-TCGTCATAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT-GTCACGT
* * *
103393884 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATC-CTGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAC-GT
* * * *
103393930 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* *
103393976 TGCCATGGTATCTTTTAACCATGGTCTTATTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
*
103394022 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
103394061 TTCAGAAAGC
Statistics
Matches: 233, Mismatches: 29, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
44 1 0.00
45 43 0.18
46 188 0.81
47 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
Found at i:103399124 original size:13 final size:13
Alignment explanation
Indices: 103399106--103399131 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103399096 TTGTGTGTTC
103399106 TTTATTTTATTTT
1 TTTATTTTATTTT
103399119 TTTATTTTATTTT
1 TTTATTTTATTTT
103399132 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:103399736 original size:35 final size:31
Alignment explanation
Indices: 103399684--103399746 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 31
103399674 TAATACATCA
*
103399684 AATATATTAAAAATATTAAAATAAATGTTTCTC
1 AATAAATTAAAAATATTAAAA-AAA-GTTTCTC
103399717 AATAAATTGAAAACATATTAAAAAAAGTTT
1 AATAAATT-AAAA-ATATTAAAAAAAGTTT
103399747 ATATTTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 11 0.41
34 7 0.26
35 9 0.33
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (31 bp):
AATAAATTAAAAATATTAAAAAAAGTTTCTC
Found at i:103399874 original size:22 final size:22
Alignment explanation
Indices: 103399845--103399893 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
103399835 ACATCCAAAT
103399845 AATAATAACAAAATAGTAGTAA
1 AATAATAACAAAATAGTAGTAA
* *
103399867 TATAATAATAAAATAGTAGTAA
1 AATAATAACAAAATAGTAGTAA
103399889 AATAA
1 AATAA
103399894 ACAACGAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (22 bp):
AATAATAACAAAATAGTAGTAA
Found at i:103399891 original size:11 final size:11
Alignment explanation
Indices: 103399854--103399892 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
103399844 TAATAATAAC
103399854 AAAATAGTAGT
1 AAAATAGTAGT
* * *
103399865 AATATAATAAT
1 AAAATAGTAGT
103399876 AAAATAGTAGT
1 AAAATAGTAGT
103399887 AAAATA
1 AAAATA
103399893 AACAACGAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (11 bp):
AAAATAGTAGT
Found at i:103411146 original size:22 final size:22
Alignment explanation
Indices: 103411118--103411162 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
103411108 CAGCTGCAGG
103411118 ATTGTCTGAAGGAGTGGTTTTC
1 ATTGTCTGAAGGAGTGGTTTTC
103411140 ATTGTCTGAAGGAGTGGTTTTC
1 ATTGTCTGAAGGAGTGGTTTTC
103411162 A
1 A
103411163 CTTTTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.20, C:0.09, G:0.31, T:0.40
Consensus pattern (22 bp):
ATTGTCTGAAGGAGTGGTTTTC
Found at i:103419256 original size:21 final size:21
Alignment explanation
Indices: 103419208--103419263 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
103419198 TGATGCAACC
* *
103419208 ACTGCTCCAGTTGAATCTTCC
1 ACTGCTCCAATTGAATCTTCA
103419229 A-TGGCTCCAATTGAATCTTCA
1 ACT-GCTCCAATTGAATCTTCA
*
103419250 ACTGCTCTAATTGA
1 ACTGCTCCAATTGA
103419264 TCCTTACACT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 1 0.03
21 28 0.93
22 1 0.03
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (21 bp):
ACTGCTCCAATTGAATCTTCA
Found at i:103424209 original size:15 final size:15
Alignment explanation
Indices: 103424185--103424239 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
103424175 TATTACTAAT
* *
103424185 AAATTTTTAATTTTA
1 AAATTATTAATTTCA
*
103424200 AAATTATTAATATCA
1 AAATTATTAATTTCA
103424215 AATATTA-TAATTTCA
1 AA-ATTATTAATTTCA
*
103424230 ATATTATTAA
1 AAATTATTAA
103424240 ACATACATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
14 4 0.12
15 25 0.76
16 4 0.12
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (15 bp):
AAATTATTAATTTCA
Found at i:103424315 original size:27 final size:31
Alignment explanation
Indices: 103424257--103424316 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 31
103424247 TATTTAATTA
103424257 TTTATATTTAATAATATAATAATTTATTAAAAT
1 TTTATATTTAATAATATAAT-ATTTA-TAAAAT
103424290 TTTAT-TTTAATAATA-AAT-TTTA-AAAAT
1 TTTATATTTAATAATATAATATTTATAAAAT
103424317 AATAATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
27 5 0.19
29 4 0.15
31 3 0.11
32 10 0.37
33 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (31 bp):
TTTATATTTAATAATATAATATTTATAAAAT
Found at i:103424325 original size:15 final size:16
Alignment explanation
Indices: 103424298--103424328 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
103424288 ATTTTATTTT
103424298 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
103424314 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
103424329 TTTTAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:103424338 original size:20 final size:20
Alignment explanation
Indices: 103424303--103424344 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
103424293 ATTTTAATAA
103424303 TAAATTTTAAAAATAATAATTT
1 TAAATTTT-AAAATAAT-ATTT
103424325 TAAATTTT-AAATAATATTT
1 TAAATTTTAAAATAATATTT
103424344 T
1 T
103424345 TCATATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
22 8 0.40
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAAATTTTAAAATAATATTT
Found at i:103424345 original size:20 final size:21
Alignment explanation
Indices: 103424303--103424345 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
103424293 ATTTTAATAA
103424303 TAAATTTTAAAAATAATAATTT
1 TAAATTTT-AAAATAATAATTT
*
103424325 TAAATTTT-AAATAATATTTT
1 TAAATTTTAAAATAATAATTT
103424345 T
1 T
103424346 CATATATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
22 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TAAATTTTAAAATAATAATTT
Found at i:103427655 original size:93 final size:93
Alignment explanation
Indices: 103427549--103427719 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
103427539 GCCCATAAGT
* * * *
103427549 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAAATCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAAATCAA
103427614 CGAGCTCGGATGCCTAGTTACATTTCAC
66 CGAGCTCGGATGCCTAGTTACATTTCAC
* *
103427642 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAAATCAA
*
103427707 CGAGTTCGGATGC
66 CGAGCTCGGATGC
103427720 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAAATCAA
CGAGCTCGGATGCCTAGTTACATTTCAC
Found at i:103427716 original size:46 final size:46
Alignment explanation
Indices: 103427541--103427716 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
103427531 TGTAACCCGC
* * *
103427541 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAATGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
103427587 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAATGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* ** * *
103427633 ACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAATGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
103427680 CCATAAATGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAATGAACTCGGACTCAACTCAACGAGCTCGGA
103427717 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.64
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAATGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:103430774 original size:20 final size:20
Alignment explanation
Indices: 103430749--103430787 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
103430739 TAGTAACATG
103430749 TACTAAATTGCATGAATTTC
1 TACTAAATTGCATGAATTTC
103430769 TACTAAATTGCATGAATTT
1 TACTAAATTGCATGAATTT
103430788 TCAATTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (20 bp):
TACTAAATTGCATGAATTTC
Found at i:103431265 original size:26 final size:24
Alignment explanation
Indices: 103431226--103431297 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
103431216 GGACTCACCA
* *
103431226 CAGCTCATATGAGCTTACCGATATAT
1 CAGCTCGTAAGAGCTTACCG-T-TAT
* *
103431252 CAGCTCGTAAGAGCTTACTGTTTT
1 CAGCTCGTAAGAGCTTACCGTTAT
* *
103431276 CAGCTCGTCAGAGCTTGCCGTT
1 CAGCTCGTAAGAGCTTACCGTT
103431298 TTAGCTCAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
24 21 0.54
25 1 0.03
26 17 0.44
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACCGTTAT
Found at i:103431283 original size:24 final size:24
Alignment explanation
Indices: 103431251--103431319 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
103431241 TACCGATATA
103431251 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCGTAAGAGCTTACTGTTT
* * *
103431275 TCAGCTCGTCAGAGCTTGCCGTTT
1 TCAGCTCGTAAGAGCTTACTGTTT
*
103431299 T-AGCTC-AATAGAGCTTACTGT
1 TCAGCTCGTA-AGAGCTTACTGT
103431320 CCATCAGCTC
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 15 0.41
24 22 0.59
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (24 bp):
TCAGCTCGTAAGAGCTTACTGTTT
Found at i:103432183 original size:30 final size:30
Alignment explanation
Indices: 103432147--103432206 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
103432137 AGGCATATGA
103432147 ATGGAAAATGCATAATATTAATTAGGTATT
1 ATGGAAAATGCATAATATTAATTAGGTATT
*
103432177 ATGGAAAATGCATGATATTAATTAGGTATT
1 ATGGAAAATGCATAATATTAATTAGGTATT
103432207 TGAATACTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.37
Consensus pattern (30 bp):
ATGGAAAATGCATAATATTAATTAGGTATT
Found at i:103439852 original size:12 final size:13
Alignment explanation
Indices: 103439820--103439852 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
103439810 GGCATCTCTA
103439820 TTTCTTC-TCTTC
1 TTTCTTCTTCTTC
103439832 TTTCTTCTTCTTC
1 TTTCTTCTTCTTC
103439845 -TTCTTCTT
1 TTTCTTCTT
103439853 ATATTTCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTCTTCTTCTTC
Found at i:103449966 original size:18 final size:18
Alignment explanation
Indices: 103449944--103449987 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
103449934 TATGAAATAA
103449944 ATAAAAACT-TTTTAAAAT
1 ATAAAAA-TATTTTAAAAT
*
103449962 TTAAAAATAATTTTAAAAT
1 ATAAAAAT-ATTTTAAAAT
103449981 ATAAAAA
1 ATAAAAA
103449988 GATATAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 6 0.27
19 15 0.68
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAAAAATATTTTAAAAT
Found at i:103452125 original size:16 final size:17
Alignment explanation
Indices: 103452100--103452135 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
103452090 TTCTGACGCC
*
103452100 AAACAGTGAAAA-AAAA
1 AAACACTGAAAACAAAA
103452116 AAACACTGAAAACAAAA
1 AAACACTGAAAACAAAA
103452133 AAA
1 AAA
103452136 AAAGCTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.75, C:0.11, G:0.08, T:0.06
Consensus pattern (17 bp):
AAACACTGAAAACAAAA
Found at i:103452134 original size:20 final size:20
Alignment explanation
Indices: 103452109--103452158 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
103452099 CAAACAGTGA
103452109 AAAAAAAAAACACTGAAAAC-
1 AAAAAAAAAA-ACTGAAAACG
*
103452129 AAAAAAAAAAGCTGAAAACG
1 AAAAAAAAAAACTGAAAACG
103452149 AAATAAAAAA
1 AAA-AAAAAA
103452159 TAAAAAACGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 8 0.30
20 13 0.48
21 6 0.22
ACGTcount: A:0.76, C:0.10, G:0.08, T:0.06
Consensus pattern (20 bp):
AAAAAAAAAAACTGAAAACG
Found at i:103465599 original size:31 final size:30
Alignment explanation
Indices: 103465563--103465634 Score: 74
Period size: 31 Copynumber: 2.4 Consensus size: 30
103465553 GATTAAATCA
*
103465563 AAATTAAAGTTTCAAGTATACATTTGAACC
1 AAATTAAAGTTTCAAGTATACAATTGAACC
* * * *
103465593 ACAATTAGAA-TTTCATGTGTATAATTGCACC
1 A-AATTA-AAGTTTCAAGTATACAATTGAACC
103465624 AAATTAAAGTT
1 AAATTAAAGTT
103465635 AGTATATATA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
29 2 0.06
30 8 0.24
31 22 0.65
32 2 0.06
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (30 bp):
AAATTAAAGTTTCAAGTATACAATTGAACC
Found at i:103469979 original size:12 final size:11
Alignment explanation
Indices: 103469948--103469975 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
103469938 TATATATATT
103469948 TAAAAATTATA
1 TAAAAATTATA
103469959 TAAAAATTATA
1 TAAAAATTATA
103469970 TAAAAA
1 TAAAAA
103469976 ATTAATATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:103475173 original size:21 final size:22
Alignment explanation
Indices: 103475134--103475174 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
103475124 CCTACCATGG
103475134 CTTGTATTTTAGTTGAATGATT
1 CTTGTATTTTAGTTGAATGATT
* *
103475156 CTTGTTTTTTA-TTTAATGA
1 CTTGTATTTTAGTTGAATGA
103475175 AGGAACCGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.22, C:0.05, G:0.15, T:0.59
Consensus pattern (22 bp):
CTTGTATTTTAGTTGAATGATT
Found at i:103477084 original size:11 final size:11
Alignment explanation
Indices: 103477049--103477095 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
103477039 AATAACAATA
103477049 AAAAT-ATAGC
1 AAAATGATAGC
* *
103477059 AAAATGACAGT
1 AAAATGATAGC
*
103477070 AAAATAATAGC
1 AAAATGATAGC
*
103477081 AAAATGTTAGC
1 AAAATGATAGC
103477092 AAAA
1 AAAA
103477096 CAACAACGAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
10 5 0.17
11 24 0.83
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.19
Consensus pattern (11 bp):
AAAATGATAGC
Found at i:103477095 original size:22 final size:21
Alignment explanation
Indices: 103477049--103477095 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
103477039 AATAACAATA
*
103477049 AAAATATAGCAAAATGACAGT
1 AAAATATAGCAAAATGACAGC
**
103477070 AAAATAATAGCAAAATGTTAGC
1 AAAAT-ATAGCAAAATGACAGC
103477092 AAAA
1 AAAA
103477096 CAACAACGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.19
Consensus pattern (21 bp):
AAAATATAGCAAAATGACAGC
Found at i:103484705 original size:20 final size:21
Alignment explanation
Indices: 103484664--103484707 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
103484654 TTGTGTACAA
*
103484664 TAAAAATGAATAAAATTGTGT
1 TAAAAATGAATAAAATTATGT
103484685 TAAAAATGAATAAAA-TATGT
1 TAAAAATGAATAAAATTATGT
103484705 TAA
1 TAA
103484708 CGAGGTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (21 bp):
TAAAAATGAATAAAATTATGT
Found at i:103485547 original size:26 final size:26
Alignment explanation
Indices: 103485518--103485570 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
103485508 GGAAAAAAAT
*
103485518 TAAAAAAATACAATTAAAAGTTTTGA
1 TAAAAAAACACAATTAAAAGTTTTGA
* *
103485544 TAAAAAAACATAATTAGAAGTTTTGA
1 TAAAAAAACACAATTAAAAGTTTTGA
103485570 T
1 T
103485571 TGAAATTCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.55, C:0.04, G:0.09, T:0.32
Consensus pattern (26 bp):
TAAAAAAACACAATTAAAAGTTTTGA
Found at i:103486310 original size:10 final size:10
Alignment explanation
Indices: 103486291--103486340 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
103486281 TTAAATTCTA
103486291 AAAGATAAAT
1 AAAGATAAAT
103486301 ACAA-ATAAAT
1 A-AAGATAAAT
*
103486311 AAAGATAATT
1 AAAGATAAAT
103486321 AAAGATAAAT
1 AAAGATAAAT
103486331 GAAA-ATAAAT
1 -AAAGATAAAT
103486341 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:103487195 original size:8 final size:8
Alignment explanation
Indices: 103487179--103487232 Score: 51
Period size: 8 Copynumber: 6.8 Consensus size: 8
103487169 GAATTTACTT
103487179 ATTATATA
1 ATTATATA
*
103487187 ATTAAATA
1 ATTATATA
103487195 ATTATATA
1 ATTATATA
103487203 A--AGTA-A
1 ATTA-TATA
103487209 ATTATATTAA
1 ATTATA-T-A
103487219 ATTATATA
1 ATTATATA
103487227 ATTATA
1 ATTATA
103487233 ATATATTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
6 3 0.08
7 4 0.11
8 23 0.61
9 1 0.03
10 7 0.18
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (8 bp):
ATTATATA
Found at i:103503979 original size:21 final size:20
Alignment explanation
Indices: 103503955--103504013 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
103503945 TGTATATATA
103503955 TAAATTTACTTATTATATAAG
1 TAAATTTA-TTATTATATAAG
*
103503976 TAAA-TAATTA-TATA-AAG
1 TAAATTTATTATTATATAAG
103503993 TAAATTATATTACTTATATAA
1 TAAATT-TATTA-TTATATAA
103504014 TTATAATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 7 0.23
18 5 0.16
19 7 0.23
20 2 0.06
21 8 0.26
22 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (20 bp):
TAAATTTATTATTATATAAG
Found at i:103503987 original size:16 final size:17
Alignment explanation
Indices: 103503966--103503997 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
103503956 AAATTTACTT
103503966 ATTATAT-AAGTAAATA
1 ATTATATAAAGTAAATA
103503982 ATTATATAAAGTAAAT
1 ATTATATAAAGTAAAT
103503998 TATATTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
ATTATATAAAGTAAATA
Found at i:103505420 original size:31 final size:31
Alignment explanation
Indices: 103505382--103505443 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
103505372 CGTCTTGAGC
103505382 TCCATCTCATCTTTTACGTCAAATAGCTCAT
1 TCCATCTCATCTTTTACGTCAAATAGCTCAT
*
103505413 TCCATCTCATCTTTTATGTCAAATAGCTCAT
1 TCCATCTCATCTTTTACGTCAAATAGCTCAT
103505444 ACTTAAAGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.26, C:0.27, G:0.06, T:0.40
Consensus pattern (31 bp):
TCCATCTCATCTTTTACGTCAAATAGCTCAT
Found at i:103515151 original size:42 final size:42
Alignment explanation
Indices: 103515087--103515250 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
103515077 CTTCGTTTTC
** * *
103515087 TCGATGCCATAGTTCAACTATGGTTTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACAT-A
* * *
103515130 T-GATGCCATAGCCCAGGTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
103515171 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCATATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---ATC---T-TCACATA
103515220 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
103515251 GAATCACATA
Statistics
Matches: 103, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
41 2 0.02
42 60 0.58
43 1 0.01
45 2 0.02
48 1 0.01
49 37 0.36
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
Found at i:103515230 original size:49 final size:47
Alignment explanation
Indices: 103515122--103515339 Score: 195
Period size: 49 Copynumber: 4.7 Consensus size: 47
103515112 TTACACATCT
*
103515122 TCACATAAT-GATGCCATAGCCCAGGTATGGTCTT--AC-A-CATAT-
1 TCACAT-ATCGATGCCATAGCCCAGATATGGTCTTACACGATCATATA
* *
103515164 TCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCATATA
1 TCACATATCGATGCCATAGCCCAGATATGGTCTTACACG--ATCATATA
* *
103515213 TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
1 TCACATATCGATGCCATAGCCCAGATATGGTCTTACACG-ATCATATA
* * * * *
103515261 TCTCA-CT-GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATA
1 TCACATATCGATGCCATAGCCCAGATATGGTCTTACAC-G-ATCATATA
* * *
103515308 T--CAGACCGATGCCATATCCCAGATATGGTCTT
1 TCACATATCGATGCCATAGCCCAGATATGGTCTT
103515340 GTACGGAAAT
Statistics
Matches: 151, Mismatches: 14, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
41 2 0.01
42 29 0.19
44 2 0.01
45 2 0.01
46 26 0.17
47 35 0.23
48 17 0.11
49 38 0.25
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (47 bp):
TCACATATCGATGCCATAGCCCAGATATGGTCTTACACGATCATATA
Found at i:103515289 original size:46 final size:47
Alignment explanation
Indices: 103515172--103515339 Score: 169
Period size: 47 Copynumber: 3.6 Consensus size: 47
103515162 ATTCATATAT
* * * * *
103515172 CGATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCATATATCACATAT
1 CGATGCCATATCCCAGATATGGTCTTACACAG-AAGCACATATCAC--AC
* * * *
103515221 CGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* * * * *
103515267 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAGAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
103515314 CGATGCCATATCCCAGATATGGTCTT
1 CGATGCCATATCCCAGATATGGTCTT
103515340 GTACGGAAAT
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
46 27 0.26
47 36 0.34
48 11 0.10
49 31 0.30
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:103515324 original size:47 final size:46
Alignment explanation
Indices: 103515131--103515339 Score: 212
Period size: 42 Copynumber: 4.5 Consensus size: 46
103515121 TTCACATAAT
* *
103515131 GATGCCATAGCCCAGGTATGGTCTTACACATATTCATATAT-----C
1 GATGCCATAGCCCAGATATGGTCTTACACGTA-TCATATATCACACC
* *
103515173 GATGCCATAGCCCAGCTATGGTCTTACACGTAATCATATATCACATATC
1 GATGCCATAGCCCAGATATGGTCTTACACGT-ATCATATATCAC--ACC
* * * * *
103515222 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATAGCCCAGATATGGTCTTACACGTATCATATATCACACC
* * * *
103515268 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAGACC
1 GATGCCATAGCCCAGATATGGTCTTACAC-GTATCATATATCACACC
*
103515315 GATGCCATATCCCAGATATGGTCTT
1 GATGCCATAGCCCAGATATGGTCTT
103515340 GTACGGAAAT
Statistics
Matches: 142, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
42 37 0.26
43 1 0.01
46 27 0.19
47 36 0.25
48 10 0.07
49 31 0.22
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (46 bp):
GATGCCATAGCCCAGATATGGTCTTACACGTATCATATATCACACC
Found at i:103515352 original size:95 final size:94
Alignment explanation
Indices: 103515131--103515339 Score: 243
Period size: 95 Copynumber: 2.3 Consensus size: 94
103515121 TTCACATAAT
* * * *
103515131 GATGCCATAGCCCAGGTATGGTCTTACAC-ATAT-TCATATAT--C-GATGCCATAGCCCAGCTA
1 GATGCCATAGCCCAGATATGGTCTTACACGA-ATCACATATCTCACTGATGCCATAGCCCAGATA
* * *
103515191 TGGTCTTACACGTAATCATATATCACATATC
65 TGGTCTTACACGTAAGCATATAT-ACAGACC
* *
103515222 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACTGATGCCATATCCCAGATAT
1 GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAGCCCAGATAT
*
103515287 GGTCTTATACAGT-AGCATATAT-CAGACC
66 GGTCTTACAC-GTAAGCATATATACAGACC
*
103515315 GATGCCATATCCCAGATATGGTCTT
1 GATGCCATAGCCCAGATATGGTCTT
103515340 GTACGGAAAT
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
91 30 0.30
92 7 0.07
93 27 0.27
94 1 0.01
95 34 0.34
96 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (94 bp):
GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAGCCCAGATAT
GGTCTTACACGTAAGCATATATACAGACC
Found at i:103515407 original size:31 final size:31
Alignment explanation
Indices: 103515370--103515510 Score: 212
Period size: 31 Copynumber: 4.5 Consensus size: 31
103515360 TTGTAGTCGA
*
103515370 AGCTACCACTATTCACTGATCAGGTAGCCGG
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
*
103515401 TA-CTACCACTTTTTACTGATCAGGTAGCCGG
1 -AGCTACCACTTTTCACTGATCAGGTAGCCGG
*
103515432 AGCTACCACTTTTCACTGATCAGGTAGTCGG
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
* * *
103515463 AGCTACCACTTTTCACTGATCCGGTAGCTGA
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
103515494 AGCTACCACTTTTCACT
1 AGCTACCACTTTTCACT
103515511 TGTCATTTGT
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
30 1 0.01
31 98 0.98
32 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (31 bp):
AGCTACCACTTTTCACTGATCAGGTAGCCGG
Found at i:103515559 original size:25 final size:25
Alignment explanation
Indices: 103515531--103515632 Score: 195
Period size: 25 Copynumber: 4.1 Consensus size: 25
103515521 CATTGATCAG
103515531 ATAAGTGTAGCCGAAGCTATCACTT
1 ATAAGTGTAGCCGAAGCTATCACTT
103515556 ATAAGTGTAGCCGAAGCTATCACTT
1 ATAAGTGTAGCCGAAGCTATCACTT
103515581 ATAAGTGTAGCCGAAGCTATCACTT
1 ATAAGTGTAGCCGAAGCTATCACTT
*
103515606 ATAAGTGTAGCCGAAGCTATCAGTT
1 ATAAGTGTAGCCGAAGCTATCACTT
103515631 AT
1 AT
103515633 CACTTTCACT
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
25 76 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (25 bp):
ATAAGTGTAGCCGAAGCTATCACTT
Found at i:103522880 original size:16 final size:16
Alignment explanation
Indices: 103522861--103522915 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 16
103522851 AAATAATAAA
*
103522861 AAACCTTAAAATA-CAT
1 AAACC-TAAAAAACCAT
*
103522877 AAACCCAAAAAACCAT
1 AAACCTAAAAAACCAT
103522893 AAACCT-AAAAACCA-
1 AAACCTAAAAAACCAT
*
103522907 AACCCTAAA
1 AAACCTAAA
103522916 CCTAGAAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 5 0.15
15 15 0.45
16 13 0.39
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (16 bp):
AAACCTAAAAAACCAT
Found at i:103522904 original size:15 final size:15
Alignment explanation
Indices: 103522861--103522915 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 15
103522851 AAATAATAAA
103522861 AAACCTTAAAATA-CAT
1 AAACC-TAAAA-ACCAT
*
103522877 AAACCCAAAAAACCAT
1 AAA-CCTAAAAACCAT
103522893 AAACCTAAAAACCA-
1 AAACCTAAAAACCAT
*
103522907 AACCCTAAA
1 AAACCTAAA
103522916 CCTAGAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 8 0.24
15 11 0.32
16 13 0.38
17 2 0.06
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (15 bp):
AAACCTAAAAACCAT
Done.