Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 31 of 362
Found at i:8987421 original size:33 final size:33
Alignment explanation
Indices: 8987379--8987441 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
8987369 AAAAGTAGAT
8987379 CTAGCATAATTAAGCGGAGTTGATTGCACCGAC
1 CTAGCATAATTAAGCGGAGTTGATTGCACCGAC
8987412 CTAGCATAATTAAGCGGAGTTGATTGCACC
1 CTAGCATAATTAAGCGGAGTTGATTGCACC
8987442 CCTAGACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (33 bp):
CTAGCATAATTAAGCGGAGTTGATTGCACCGAC
Found at i:8997070 original size:26 final size:26
Alignment explanation
Indices: 8997034--8997143 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
8997024 TGATACAAAT
8997034 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
8997060 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
8997086 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* ** *
8997112 TGATAATGGGTTACATAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
8997138 TGATAA
1 TGATAA
8997144 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:8998659 original size:26 final size:26
Alignment explanation
Indices: 8998629--8998681 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
8998619 TTTATAGTTT
8998629 TACCCCTAGTAGATAAATT-ACCGAAA
1 TACCCCTAG-AGATAAATTGACCGAAA
* *
8998655 TACCCCTAGAGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
8998681 T
1 T
8998682 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:9000020 original size:5 final size:5
Alignment explanation
Indices: 9000010--9000056 Score: 94
Period size: 5 Copynumber: 9.4 Consensus size: 5
9000000 TAATTGATAT
9000010 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TA
9000057 ACTAAACTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:9001133 original size:37 final size:38
Alignment explanation
Indices: 9001033--9001133 Score: 87
Period size: 37 Copynumber: 2.6 Consensus size: 38
9001023 GACCTCGAGT
* **
9001033 CGATGAGACACAGGGTGTCATACTGTTACTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AC--TTACTTCGGATAGAGC
** ** * *
9001074 CGATGAGGTACTGGGTACCAACTTACTTCGGCTTG-GC
1 CGATGAGACACTGGGTGTCAACTTACTTCGGATAGAGC
9001111 CGATGAGACACTGGGTGTCAACT
1 CGATGAGACACTGGGTGTCAACT
9001134 ATTGCTTCGA
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
37 19 0.40
38 11 0.23
40 2 0.04
41 15 0.32
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAACTTACTTCGGATAGAGC
Found at i:9002597 original size:12 final size:12
Alignment explanation
Indices: 9002580--9002628 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
9002570 ATTTCGAACA
9002580 TTTAAATATTAG
1 TTTAAATATTAG
*
9002592 TTTAAATAATACCG
1 TTTAAATATTA--G
*
9002606 TTT-AGTATTAG
1 TTTAAATATTAG
9002617 TTTAAATATTAG
1 TTTAAATATTAG
9002629 ACAACTACTG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 4 0.13
12 17 0.57
13 5 0.17
14 4 0.13
ACGTcount: A:0.39, C:0.04, G:0.10, T:0.47
Consensus pattern (12 bp):
TTTAAATATTAG
Found at i:9005537 original size:37 final size:37
Alignment explanation
Indices: 9005493--9005563 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
9005483 ATTGTTATTA
*
9005493 ATTTTAATAGGATTATTATTATAA-ATAATTTAATCAT
1 ATTTTAATAGAATTATTATTA-AATATAATTTAATCAT
*
9005530 ATTTTAATATAATTATTATTAAATATAATTTAAT
1 ATTTTAATAGAATTATTATTAAATATAATTTAAT
9005564 AAAAATAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 2 0.06
37 29 0.94
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (37 bp):
ATTTTAATAGAATTATTATTAAATATAATTTAATCAT
Found at i:9005541 original size:21 final size:20
Alignment explanation
Indices: 9005517--9005601 Score: 70
Period size: 21 Copynumber: 4.3 Consensus size: 20
9005507 ATTATTATAA
9005517 ATAATTTAATCATATTTTAAT
1 ATAATTTAAT-ATATTTTAAT
*
9005538 ATAA-TT-AT-TA-TTAAAT
1 ATAATTTAATATATTTTAAT
* ** *
9005554 ATAATTTAATAAAAATAATAT
1 ATAATTTAATATATTTTA-AT
*
9005575 ATAATTTAATATTTTTTAAT
1 ATAATTTAATATATTTTAAT
9005595 ATAATTT
1 ATAATTT
9005602 TTTATATTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
16 9 0.18
17 4 0.08
18 2 0.04
19 3 0.06
20 14 0.27
21 19 0.37
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (20 bp):
ATAATTTAATATATTTTAAT
Found at i:9005625 original size:55 final size:58
Alignment explanation
Indices: 9005517--9005625 Score: 145
Period size: 57 Copynumber: 1.9 Consensus size: 58
9005507 ATTATTATAA
*
9005517 ATAATTTAATCATATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAATAT
1 ATAATTTAATCATATTTTAATATAATTATTATTAAATATAAATTAATAAAAATAATAT
* * *
9005575 ATAATTTAAT-ATTTTTTAATATAATT-TT-TTATAT-TAAATTATATTAAAATA
1 ATAATTTAATCATATTTTAATATAATTATTATTAAATATAAATTA-ATAAAAATA
9005626 TTTTTAGGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
54 6 0.13
55 13 0.28
56 2 0.04
57 15 0.33
58 10 0.22
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (58 bp):
ATAATTTAATCATATTTTAATATAATTATTATTAAATATAAATTAATAAAAATAATAT
Found at i:9008751 original size:50 final size:50
Alignment explanation
Indices: 9008632--9008953 Score: 420
Period size: 50 Copynumber: 6.5 Consensus size: 50
9008622 AGATGCTGAC
* * *
9008632 GCCATGTCCCAGACATGGTCTTACATTGGCTCAT-ACATCA---AAGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTC-TCACAT-ATTGAAGCCGAT
* * * * * *
9008680 GCCATGTCCCAGACATGGTCTTACACTGACTTTCAAATATCGAGGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
*
9008730 GCCATGTCCCAAATATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
* *
9008780 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATTGAAGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
* *
9008830 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATTGAAGCCGTT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
* ** *
9008880 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCATC-TATCGGTGCAGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCA-CATATTGAAGCCGAT
9008930 GCCATGTCCCAAACATGGTCTTAC
1 GCCATGTCCCAAACATGGTCTTAC
9008954 TCTAGCACTC
Statistics
Matches: 245, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
47 2 0.01
48 32 0.13
50 210 0.86
51 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
Found at i:9011784 original size:13 final size:13
Alignment explanation
Indices: 9011766--9011793 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
9011756 CATAGCAAAG
9011766 TACTGATAATTCT
1 TACTGATAATTCT
9011779 TACTGATAATTCT
1 TACTGATAATTCT
9011792 TA
1 TA
9011794 TCTAAGTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.46
Consensus pattern (13 bp):
TACTGATAATTCT
Found at i:9014887 original size:27 final size:27
Alignment explanation
Indices: 9014829--9014881 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
9014819 CAACTTAGTT
9014829 AAATTAGAACTAAGTAGGTAGTGTATA
1 AAATTAGAACTAAGTAGGTAGTGTATA
9014856 AAATTAGAACTAAGTAGGTAGTGTAT
1 AAATTAGAACTAAGTAGGTAGTGTAT
9014882 TTAATTTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.04, G:0.23, T:0.30
Consensus pattern (27 bp):
AAATTAGAACTAAGTAGGTAGTGTATA
Found at i:9033312 original size:27 final size:27
Alignment explanation
Indices: 9033282--9033358 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
9033272 TAGTTTGCCG
* **
9033282 AGACCGTAAACACAGGATAGTCTGTCA
1 AGACAGTAAACACAGGATAGTCCATCA
* *
9033309 AGACAATAAACACAGGGTAGTCCATCA
1 AGACAGTAAACACAGGATAGTCCATCA
* *
9033336 GGACAGTAAACACGGGATAGTCC
1 AGACAGTAAACACAGGATAGTCC
9033359 GCGGTGACAG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (27 bp):
AGACAGTAAACACAGGATAGTCCATCA
Found at i:9033367 original size:27 final size:27
Alignment explanation
Indices: 9033337--9033403 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
9033327 AGTCCATCAG
*
9033337 GACAGTAAACACGGGATAGTCCGCGGT
1 GACAGTAAACACGGGATAATCCGCGGT
9033364 GACAGTAAACACGGGATAATCCGCGGT
1 GACAGTAAACACGGGATAATCCGCGGT
9033391 GACAGTAAACACG
1 GACAGTAAACACG
9033404 AAGTAGTTCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.34, C:0.22, G:0.30, T:0.13
Consensus pattern (27 bp):
GACAGTAAACACGGGATAATCCGCGGT
Found at i:9037321 original size:25 final size:26
Alignment explanation
Indices: 9037269--9037322 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
9037259 TCTTTTTGAA
* *
9037269 TTTCTATTTTTTGAATTTCTTTATAT
1 TTTCTATTTTTTGAATTTCTCTAAAT
9037295 TTTC-ATTTTTTGAAATTT-TCTAAAT
1 TTTCTATTTTTTG-AATTTCTCTAAAT
9037320 TTT
1 TTT
9037323 TAACTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67
Consensus pattern (26 bp):
TTTCTATTTTTTGAATTTCTCTAAAT
Found at i:9037350 original size:28 final size:30
Alignment explanation
Indices: 9037300--9037362 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
9037290 TATATTTTCA
*
9037300 TTTTTTGAAATTTTCTAAATTTTT-AACTT
1 TTTTTTAAAATTTTCTAAATTTTTAAACTT
**
9037329 TTTTTTAAAATTTT-TATGTTTTTAGAACTT
1 TTTTTTAAAATTTTCTAAATTTTTA-AACTT
9037359 TTTT
1 TTTT
9037363 ATTTGTTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 7 0.24
29 13 0.45
30 9 0.31
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (30 bp):
TTTTTTAAAATTTTCTAAATTTTTAAACTT
Found at i:9037390 original size:11 final size:11
Alignment explanation
Indices: 9037374--9037410 Score: 51
Period size: 9 Copynumber: 3.5 Consensus size: 11
9037364 TTTGTTCAAA
9037374 TTTTTTGCAAT
1 TTTTTTGCAAT
9037385 TTTTTTG--AT
1 TTTTTTGCAAT
9037394 TTTTTTGCTAAT
1 TTTTTTGC-AAT
9037406 TTTTT
1 TTTTT
9037411 ATTTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
9 9 0.39
11 7 0.30
12 7 0.30
ACGTcount: A:0.14, C:0.05, G:0.08, T:0.73
Consensus pattern (11 bp):
TTTTTTGCAAT
Found at i:9037416 original size:20 final size:19
Alignment explanation
Indices: 9037374--9037416 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
9037364 TTTGTTCAAA
9037374 TTTTTTGCAATTTTTTTGAT
1 TTTTTTGCAATTTTTTT-AT
9037394 TTTTTTGCTAA-TTTTTTAT
1 TTTTTTGC-AATTTTTTTAT
9037413 TTTT
1 TTTT
9037417 ATTTTGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.27
20 14 0.64
21 2 0.09
ACGTcount: A:0.14, C:0.05, G:0.07, T:0.74
Consensus pattern (19 bp):
TTTTTTGCAATTTTTTTAT
Found at i:9037488 original size:26 final size:28
Alignment explanation
Indices: 9037454--9037508 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
9037444 TTGTTTATAA
9037454 TAAATATTTTTTAA-TTT-TGTTTATTTT
1 TAAATA-TTTTTAAGTTTATGTTTATTTT
*
9037481 TAAA-ATTTTTAAGTTTATTTTTATTTT
1 TAAATATTTTTAAGTTTATGTTTATTTT
9037508 T
1 T
9037509 TTTGAATAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 7 0.28
26 4 0.16
27 14 0.56
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (28 bp):
TAAATATTTTTAAGTTTATGTTTATTTT
Found at i:9037767 original size:22 final size:21
Alignment explanation
Indices: 9037736--9037784 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 21
9037726 GCTTTTATTG
*
9037736 AATGAATTATAAACGAACATC
1 AATGAATTATAAACGAACATA
*
9037757 AATGAGATTATAAATGAACATA
1 AATGA-ATTATAAACGAACATA
9037779 AATGAA
1 AATGAA
9037785 CTGAACGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.55, C:0.08, G:0.12, T:0.24
Consensus pattern (21 bp):
AATGAATTATAAACGAACATA
Found at i:9039669 original size:21 final size:23
Alignment explanation
Indices: 9039605--9039669 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 23
9039595 ATTAAGGAGA
*
9039605 ATTAATAATATATTTATATTTTGT
1 ATTAATAATATATTTA-ATTTGGT
*
9039629 ATTAATTATTATAATTTTAA-TTGGT
1 ATTAA-TAATAT-A-TTTAATTTGGT
9039654 A-TAATAATATATTTAA
1 ATTAATAATATATTTAA
9039670 CTTCAGATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
21 5 0.14
22 1 0.03
23 5 0.14
24 8 0.23
25 10 0.29
26 2 0.06
27 4 0.11
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.54
Consensus pattern (23 bp):
ATTAATAATATATTTAATTTGGT
Found at i:9052234 original size:3 final size:3
Alignment explanation
Indices: 9052219--9052261 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
9052209 CCATTTTTCC
* * *
9052219 TCT TCT CCT TCT TCT TCT TCT CTCT TCT TCT TTT TCT TTT TCT
1 TCT TCT TCT TCT TCT TCT TCT -TCT TCT TCT TCT TCT TCT TCT
9052262 CTAACCTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:9052244 original size:22 final size:22
Alignment explanation
Indices: 9052218--9052263 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
9052208 TCCATTTTTC
9052218 CTCTTCTCCTTCTTCTTCTTCT
1 CTCTTCTCCTTCTTCTTCTTCT
* * *
9052240 CTCTTCTTCTTTTTCTTTTTCT
1 CTCTTCTCCTTCTTCTTCTTCT
9052262 CT
1 CT
9052264 AACCTTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (22 bp):
CTCTTCTCCTTCTTCTTCTTCT
Found at i:9055459 original size:95 final size:97
Alignment explanation
Indices: 9055339--9055580 Score: 296
Period size: 95 Copynumber: 2.5 Consensus size: 97
9055329 GGTTTTTAAA
* ** *
9055339 TTTTAGGG-TTTTAAGGAAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATT
1 TTTTAGGGTTTTTAAGG-AAAAAATTAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATT
*
9055403 ACT-AATTTT-AAAAATTAGATTATGG-TTTAGTG
65 A-TAAATTTTAAAAAATTAGATTA-GGATTTAGGG
* *
9055435 -TTTATGGTTTTTAAGGAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTTAGGGTTTTTAAGGAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
9055499 TAAATTTTAAAAAAATTAGATTAGGATTTTAGGG
66 TAAATTTT-AAAAAATTAGATTAGGA-TTTAGGG
* * * *
9055533 TTTTAGGGTATTTAAGAAAAAAAATCAAATAAATTAGGGTTTGGGGTT
1 TTTTAGGGTTTTTAAG-GAAAAAATTAAATAAATTAGGGTTTAGGGTT
9055581 TAGGATAACT
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
94 1 0.01
95 55 0.44
96 10 0.08
97 13 0.10
98 6 0.05
99 13 0.10
100 28 0.22
ACGTcount: A:0.40, C:0.01, G:0.19, T:0.40
Consensus pattern (97 bp):
TTTTAGGGTTTTTAAGGAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
TAAATTTTAAAAAATTAGATTAGGATTTAGGG
Found at i:9055842 original size:126 final size:126
Alignment explanation
Indices: 9055625--9056163 Score: 792
Period size: 126 Copynumber: 4.3 Consensus size: 126
9055615 AAAAGCTTCT
* * * **
9055625 ACGTGGACGTTCTTTTGCTATAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTATGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
*
9055690 ATAGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
9055751 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* **
9055816 ATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTTC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
*
9055877 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGATGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * *
9055942 ATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCTC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * **
9056003 ACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * * *
9056068 ATAGTGTCAAAAATGCTTCAAGCAAGATGCATTTTTAGCAAAAGTACTGAAAGAAACTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * * *
9056129 ATGTGGATGTTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
9056164 TAACTTGGGC
Statistics
Matches: 380, Mismatches: 31, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
125 2 0.01
126 376 0.99
127 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:9058565 original size:20 final size:20
Alignment explanation
Indices: 9058536--9058577 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
9058526 GAGAGCCATA
*
9058536 TTTTCATTTAGCGGCACTAT
1 TTTTCATTTAGCAGCACTAT
*
9058556 TTTTCGTTTAGCAGCACTAT
1 TTTTCATTTAGCAGCACTAT
9058576 TT
1 TT
9058578 GTTTGACGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (20 bp):
TTTTCATTTAGCAGCACTAT
Found at i:9058678 original size:16 final size:16
Alignment explanation
Indices: 9058657--9058688 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9058647 TTTTTATTTT
*
9058657 AAAAAATAAATTTAGA
1 AAAAAATAAAATTAGA
9058673 AAAAAATAAAATTAGA
1 AAAAAATAAAATTAGA
9058689 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (16 bp):
AAAAAATAAAATTAGA
Found at i:9058756 original size:11 final size:11
Alignment explanation
Indices: 9058717--9058768 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
9058707 TAAGGAGAGT
*
9058717 TTTGAGAGGAA
1 TTTGAGAGAAA
* *
9058728 TTTAAGATAAA
1 TTTGAGAGAAA
9058739 TTTGAGAG--A
1 TTTGAGAGAAA
9058748 TTTGAGAGAAA
1 TTTGAGAGAAA
9058759 TTTGAGAGAA
1 TTTGAGAGAA
9058769 TATTGAAAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 9 0.26
11 25 0.74
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:9058759 original size:20 final size:20
Alignment explanation
Indices: 9058717--9058767 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
9058707 TAAGGAGAGT
*
9058717 TTTGAGAGGAATTTAAGATAAA
1 TTTGAGA-G-ATTTAAGAGAAA
*
9058739 TTTGAGAGATTTGAGAGAAA
1 TTTGAGAGATTTAAGAGAAA
9058759 TTTGAGAGA
1 TTTGAGAGA
9058768 ATATTGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 19 0.70
21 1 0.04
22 7 0.26
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.31
Consensus pattern (20 bp):
TTTGAGAGATTTAAGAGAAA
Found at i:9058780 original size:31 final size:31
Alignment explanation
Indices: 9058717--9058780 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
9058707 TAAGGAGAGT
* * *
9058717 TTTGAGAGGAATTTAAGATAAATTTGAGAGA
1 TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
*
9058748 TTTGAGAGAAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGAAATTTAAGAGAAAT-TTGAAAGA
9058779 TT
1 TT
9058781 GAAGATTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 3 0.11
31 25 0.89
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (31 bp):
TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
Found at i:9061976 original size:39 final size:38
Alignment explanation
Indices: 9061922--9062057 Score: 177
Period size: 39 Copynumber: 3.6 Consensus size: 38
9061912 CATGTTTTTA
*
9061922 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTG-TTATATG
*
9061961 AGTATTGTGATATATGTTTAAATGTTATGTG--ATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGTTATATG
* *
9061997 AGTATTGCGATATATGCTTAAATTTTATGTGGTTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGT-GTTATATG
* * *
9062036 TGTAATGTGATACATGCTTAAA
1 AGTATTGTGATATATGCTTAAA
9062058 ACTGAATATG
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
36 32 0.38
37 1 0.01
39 52 0.61
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (38 bp):
AGTATTGTGATATATGCTTAAATGTTATGTGTTATATG
Found at i:9063691 original size:10 final size:10
Alignment explanation
Indices: 9063676--9063735 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
9063666 TAATTTTAGG
9063676 ATTTAT-TTT
1 ATTTATCTTT
9063685 CATTTATCTTT
1 -ATTTATCTTT
*
9063696 ATTTATCATT
1 ATTTATCTTT
* *
9063706 AATTATGTTT
1 ATTTATCTTT
9063716 ATTTAT-TTGT
1 ATTTATCTT-T
9063726 ATTTATCTTT
1 ATTTATCTTT
9063736 GAGAATTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
9 2 0.05
10 35 0.83
11 5 0.12
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:9065209 original size:19 final size:20
Alignment explanation
Indices: 9065171--9065219 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
9065161 AGATAATCAC
*
9065171 TTTAATATTAAATTTATTAA
1 TTTAATATTAAATCTATTAA
9065191 TTTAATATTAAA-CTATTAA
1 TTTAATATTAAATCTATTAA
**
9065210 AATAATATTA
1 TTTAATATTA
9065220 TATTTGGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTAATATTAAATCTATTAA
Found at i:9066781 original size:16 final size:16
Alignment explanation
Indices: 9066760--9066790 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9066750 CTATGCATAC
9066760 AAAATACAAAAGACAG
1 AAAATACAAAAGACAG
9066776 AAAATACAAAAGACA
1 AAAATACAAAAGACA
9066791 TAATAGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.71, C:0.13, G:0.10, T:0.06
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:9074226 original size:20 final size:21
Alignment explanation
Indices: 9074203--9074244 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
9074193 TTTCATTTAG
9074203 CTCACATGAGCTTCAG-TTAA
1 CTCACATGAGCTTCAGATTAA
* *
9074223 CTCATATGAGTTTCAGATTAA
1 CTCACATGAGCTTCAGATTAA
9074244 C
1 C
9074245 GCTTTTGGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.33
Consensus pattern (21 bp):
CTCACATGAGCTTCAGATTAA
Found at i:9074270 original size:21 final size:21
Alignment explanation
Indices: 9074232--9074330 Score: 81
Period size: 21 Copynumber: 4.7 Consensus size: 21
9074222 ACTCATATGA
* *
9074232 GTTTCAGATTAACGCTTTTGG
1 GTTTCAGTTTAACCCTTTTGG
** *
9074253 GTTTCAGTTTAGTCCTTTTGA
1 GTTTCAGTTTAACCCTTTTGG
* **
9074274 GCTTCAGTTTAACCCTAATGG
1 GTTTCAGTTTAACCCTTTTGG
* * ** *
9074295 GTTTCAGTTCAACTCTTACGA
1 GTTTCAGTTTAACCCTTTTGG
9074316 GTTTCAGTTTAACCC
1 GTTTCAGTTTAACCC
9074331 AACTGGGTTT
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 59 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.41
Consensus pattern (21 bp):
GTTTCAGTTTAACCCTTTTGG
Found at i:9074322 original size:42 final size:41
Alignment explanation
Indices: 9074214--9074358 Score: 139
Period size: 42 Copynumber: 3.5 Consensus size: 41
9074204 TCACATGAGC
* * * **
9074214 TTCAGTTAACTCATATGAGTTTCAGATTAACGCTTTTGGGT
1 TTCAGTTAACTCTTATGAGTTTCAGTTTAACCCTAATGGGT
* * * *
9074255 TTCAGTTTAGTCCTTTTGAGCTTCAGTTTAACCCTAATGGGT
1 TTCAGTTAACT-CTTATGAGTTTCAGTTTAACCCTAATGGGT
*
9074297 TTCAGTTCAACTCTTACGAGTTTCAGTTTAACCC-AACTGGGT
1 TTCAGTT-AACTCTTATGAGTTTCAGTTTAACCCTAA-TGGGT
**
9074339 TTTTGTTCAACTCTTATGAG
1 TTCAGTT-AACTCTTATGAG
9074359 CTTCTGTTCA
Statistics
Matches: 84, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
41 11 0.13
42 71 0.85
43 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (41 bp):
TTCAGTTAACTCTTATGAGTTTCAGTTTAACCCTAATGGGT
Found at i:9074340 original size:21 final size:21
Alignment explanation
Indices: 9074276--9074340 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
9074266 CCTTTTGAGC
9074276 TTCAGTTTAACCCTAA-TGGGT
1 TTCAGTTTAACCC-AACTGGGT
* ** *
9074297 TTCAGTTCAACTCTTAC-GAGT
1 TTCAGTTTAAC-CCAACTGGGT
9074318 TTCAGTTTAACCCAACTGGGT
1 TTCAGTTTAACCCAACTGGGT
9074339 TT
1 TT
9074341 TTGTTCAACT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.09
21 29 0.88
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (21 bp):
TTCAGTTTAACCCAACTGGGT
Found at i:9076089 original size:10 final size:11
Alignment explanation
Indices: 9076041--9076093 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
9076031 GTATATCATA
9076041 GCATATCATGT
1 GCATATCATGT
*
9076052 GCATATCAT-A
1 GCATATCATGT
*
9076062 ACATATCATGT
1 GCATATCATGT
9076073 GCATATCATGT
1 GCATATCATGT
*
9076084 -CCTATCATGT
1 GCATATCATGT
9076094 ATAACAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
10 17 0.47
11 19 0.53
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (11 bp):
GCATATCATGT
Found at i:9076093 original size:21 final size:21
Alignment explanation
Indices: 9076033--9076081 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
9076023 TATATTGAGT
*
9076033 ATATCATAGCATATCATGTGC
1 ATATCATAACATATCATGTGC
9076054 ATATCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
9076075 ATATCAT
1 ATATCAT
9076082 GTCCTATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (21 bp):
ATATCATAACATATCATGTGC
Found at i:9076235 original size:27 final size:27
Alignment explanation
Indices: 9076205--9076426 Score: 113
Period size: 27 Copynumber: 8.3 Consensus size: 27
9076195 GGGGCAAAAT
* *
9076205 GGTAATTTTACCCCACAAGGTTATCTC
1 GGTAATTCTACCCCACAAGGGTATCTC
* * *
9076232 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATCTC
* * * * *
9076259 GGTATTTCTATCCTA-TAGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATCTC
** * * * *
9076285 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATCTC
* * * * * *
9076312 AGTAACTCTACCCTACAATGATATTTC
1 GGTAATTCTACCCCACAAGGGTATCTC
* * * *
9076339 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATCTC
* * * * *
9076366 AGTAACTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATCTC
* * * * *
9076393 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCCACAAGGGTATCTC
9076420 GGTAATT
1 GGTAATT
9076427 TTACAAACCA
Statistics
Matches: 165, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 20 0.12
27 145 0.88
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCCACAAGGGTATCTC
Found at i:9076352 original size:54 final size:54
Alignment explanation
Indices: 9076213--9076418 Score: 279
Period size: 54 Copynumber: 3.8 Consensus size: 54
9076203 ATGGTAATTT
* * * * * **
9076213 TACCCCACAAGGTTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAACTC
* * * *
9076267 TATCCTA-TAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCAGTAACTC
1 TACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAACTC
* *
9076320 TACCCTACAATGATATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAACTC
1 TACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAACTC
*
9076374 TACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
1 TACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
9076419 TGGTAATTTT
Statistics
Matches: 131, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
53 43 0.33
54 88 0.67
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (54 bp):
TACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAACTC
Found at i:9076425 original size:81 final size:80
Alignment explanation
Indices: 9076233--9076426 Score: 271
Period size: 81 Copynumber: 2.4 Consensus size: 80
9076223 GGTTATCTCG
* * * *
9076233 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTATCCTATAGGGTATTTCAATAATTCTACCC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATTTCAATAACTCTACCC
*
9076298 TATAGGGGTATTTCA
66 TACAGGGGTATTTCA
* ** * * *
9076313 GTAACTCTACCCTACAATGATATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAACTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACA-GGGTATTTCAATAACTCTACC
9076378 CTACAGGGGTATTTCA
65 CTACAGGGGTATTTCA
*
9076394 GTAATTCTACCCTACAGGGGTATTTTGGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATT
9076427 TTACAAACCA
Statistics
Matches: 96, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
80 35 0.36
81 61 0.64
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (80 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATTTCAATAACTCTACCC
TACAGGGGTATTTCA
Found at i:9076438 original size:27 final size:27
Alignment explanation
Indices: 9076408--9076591 Score: 219
Period size: 27 Copynumber: 6.9 Consensus size: 27
9076398 TTCTACCCTA
9076408 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
9076435 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
** *
9076462 CAAAGGTATTTTGGTAATTTTAC-AAG
1 CAGGGGTATTTTGGTAATTTTACAAAC
** * * * *
9076488 TTGAGGGTATTTTAGTAATTTCATAAAT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
*
9076516 CAGGGGTA-TTTGGTAATTTCACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
9076542 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
9076569 TAGGGGTATTTTGGTAATTTTAC
1 CAGGGGTATTTTGGTAATTTTAC
9076592 TAATTAAAGA
Statistics
Matches: 132, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 24 0.18
27 105 0.80
28 3 0.02
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:9076439 original size:54 final size:54
Alignment explanation
Indices: 9076233--9076591 Score: 177
Period size: 54 Copynumber: 6.7 Consensus size: 54
9076223 GGTTATCTCG
* * * *
9076233 GTAATTCTACCCTACAGGGGTATTTCGGT-A-TTT-CTATCCTATAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAACC-A-GGGGTATTTCA
* * ** * * ** ** *
9076286 ATAATTCTACCCTATAGGGGTATTTCAGTAACTCTACCCTA-CAATGATATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTCA
** * * **
9076340 GTAATTCTACCCTACAGGGGTATTTCAGTAACTCTACCCTA-CAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTCA
**
9076394 GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTCA
* * * *** *
9076448 GTAATTTTGTAAACC-A-A-AGGTATTTTGGTAATTTTAC-AAGTTGAGGGTATTTTA
1 GTAA--TTCT-ACCCTACAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTCA
** * * **
9076502 GTAATTTCATA-AAT-CAGGGGTA-TTTGGTAATTTCACAAACTAGGGGTATTTTG
1 GTAA-TTC-TACCCTACAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTCA
* **
9076555 GTAATTTTA-CAAACTAGGGGTATTTTGGTAATTTTAC
1 GTAATTCTACCCTAC-AGGGGTATTTTGGTAATTTTAC
9076592 TAATTAAAGA
Statistics
Matches: 248, Mismatches: 41, Indels: 33
0.77 0.13 0.10
Matches are distributed among these distances:
51 3 0.01
52 3 0.01
53 69 0.28
54 160 0.65
55 4 0.02
56 5 0.02
57 4 0.02
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTCA
Found at i:9076470 original size:81 final size:80
Alignment explanation
Indices: 9076385--9076534 Score: 176
Period size: 81 Copynumber: 1.9 Consensus size: 80
9076375 ACCCTACAGG
* * *
9076385 GGTATTTCAGTAATTCTAC-CCTACAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 GGTATTTCAGTAATTCTACAACTACA-GGGTATTTTAGTAATTTCACAAACCAGGGGTA-TTTGG
9076449 TAATTTTGTAAACCAAA
64 TAATTTTGTAAACCAAA
** * * ** * *
9076466 GGTATTTTGGTAATTTTACAAGTTGAGGGTATTTTAGTAATTTCATAAATCAGGGGTATTTGGTA
1 GGTATTTCAGTAATTCTACAACTACAGGGTATTTTAGTAATTTCACAAACCAGGGGTATTTGGTA
9076531 ATTT
66 ATTT
9076535 CACAAACTAG
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
80 11 0.19
81 44 0.77
82 2 0.04
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
GGTATTTCAGTAATTCTACAACTACAGGGTATTTTAGTAATTTCACAAACCAGGGGTATTTGGTA
ATTTTGTAAACCAAA
Found at i:9076614 original size:107 final size:108
Alignment explanation
Indices: 9076408--9076642 Score: 255
Period size: 107 Copynumber: 2.2 Consensus size: 108
9076398 TTCTACCCTA
* * **
9076408 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTT
1 CAGGGGTACTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTT
** ***
9076473 TGGTAATTTTACAAGTTGAGGGTATTTTAGTAATT-TCATAAAT
66 TGGTAATTTTACAAGTTGAAAGTATAAAAGTAATTCT-ATAAAT
* * **
9076516 CAGGGGTA-TTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
1 CAGGGGTACTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTT
*
9076580 TGGTAATTTTACTAA-TT-AAAG-ATAAAACGATAATTCTGTAAAT
66 TGGTAATTTTAC-AAGTTGAAAGTATAAAA-G-TAATTCTATAAAT
* *
9076623 CGGGGGTACTTTTGTAATTT
1 CAGGGGTACTTTGGTAATTT
9076643 GGTAAACTAA
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
105 3 0.03
106 3 0.03
107 80 0.75
108 21 0.20
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (108 bp):
CAGGGGTACTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTT
TGGTAATTTTACAAGTTGAAAGTATAAAAGTAATTCTATAAAT
Found at i:9076834 original size:17 final size:18
Alignment explanation
Indices: 9076814--9076851 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
9076804 AACTTATCCA
*
9076814 ATTGGGCCCATA-GGCCC
1 ATTGGGCCCACATGGCCC
9076831 ATTGGGCCCACATGGCCC
1 ATTGGGCCCACATGGCCC
9076849 ATT
1 ATT
9076852 TCGGCCGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.18, C:0.34, G:0.26, T:0.21
Consensus pattern (18 bp):
ATTGGGCCCACATGGCCC
Found at i:9082991 original size:18 final size:18
Alignment explanation
Indices: 9082968--9083004 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
9082958 ATTTGGTTAA
9082968 TCGATCGATTAACCGAAT
1 TCGATCGATTAACCGAAT
*
9082986 TCGATCGTTTAACCGAAT
1 TCGATCGATTAACCGAAT
9083004 T
1 T
9083005 AATTCAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (18 bp):
TCGATCGATTAACCGAAT
Found at i:9093943 original size:21 final size:22
Alignment explanation
Indices: 9093906--9093953 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
9093896 ATGTTGACCG
9093906 GCATTGACTAATAATTGATC-A
1 GCATTGACTAATAATTGATCGA
* *
9093927 GCATTGA-TCAATCATTGGTCGA
1 GCATTGACT-AATAATTGATCGA
9093949 GCATT
1 GCATT
9093954 AGTTGATGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 16 0.70
22 6 0.26
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (22 bp):
GCATTGACTAATAATTGATCGA
Found at i:9098487 original size:15 final size:16
Alignment explanation
Indices: 9098465--9098499 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
9098455 GTAGAGGGAC
*
9098465 ATTTTTTTTAAGGTAA
1 ATTTTTTTTAAGATAA
9098481 ATTTTTTTTAAGATAA
1 ATTTTTTTTAAGATAA
9098497 ATT
1 ATT
9098500 ATAATTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (16 bp):
ATTTTTTTTAAGATAA
Found at i:9098939 original size:37 final size:36
Alignment explanation
Indices: 9098888--9098960 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 36
9098878 ATTTAATTAA
9098888 AATTATTTTAATCAAATTTAAATAACTAGAAAATAT
1 AATTATTTTAATCAAATTTAAATAACTAGAAAATAT
*
9098924 AATTTTTTTAAATCAAATTTAAATAACTAGAAAATAT
1 AATTATTTT-AATCAAATTTAAATAACTAGAAAATAT
9098961 TGATTGTTGG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 8 0.23
37 27 0.77
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (36 bp):
AATTATTTTAATCAAATTTAAATAACTAGAAAATAT
Found at i:9101605 original size:36 final size:36
Alignment explanation
Indices: 9101560--9101636 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 36
9101550 AGTCATTGAT
*
9101560 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
9101596 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
9101632 TGATT
1 CGATT
9101637 GTGTAGCTCC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 36 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:9102266 original size:36 final size:36
Alignment explanation
Indices: 9102221--9102297 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 36
9102211 AGTCATTGAT
*
9102221 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
9102257 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
9102293 TGATT
1 CGATT
9102298 GTGTAGCTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 36 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:9102629 original size:660 final size:660
Alignment explanation
Indices: 9101351--9104665 Score: 5899
Period size: 660 Copynumber: 5.0 Consensus size: 660
9101341 TAGCTGTTTA
*
9101351 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGTTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
* *
9101416 TGTTTTTGATGTGCATGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGATTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
*
9101481 AGTTATCTGACAGTTGATTGATTGGAGAGACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
9101546 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
*
9101611 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCCGAGCGCATGTTATTAAGTAACGGATTGAG
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGC-TGTTATTAAGTAACGGATTGAG
*
9101676 TAGTTCCAAGCGTCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCAC
325 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCAC
* *
9101741 GTGGTAGTAATTGACGGATTAAGTAGTTATGAGCATGTGACCATGCTTGAGCTACTATCCTTGGA
390 GTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
* * *
9101806 CTATCAGTAGTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATGACTGTTTACC
455 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
*
9101871 GATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTCTCTTTCTCATTTTGTTCT
520 GATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
9101936 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTG
585 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTG
9102001 TTAGTAATTAT
650 TTAGTAATTAT
9102012 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
9102077 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAAAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
9102142 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
9102207 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
9102272 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
9102337 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
326 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
* *
9102402 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACCATCTTTGGAC
391 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
* *
9102467 TATCAGTACTTGTTATAGTTTCTCATGGAACTGGTTAAACGTTAAAGCATAATAACTGTTTACTG
456 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
*
9102532 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATTTGTTTCTTTCTCATTTTGTTCTT
521 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
9102597 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
586 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
9102662 TAGTAATTAT
651 TAGTAATTAT
*
9102672 TGGAACTGGTTAAACGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
9102737 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
9102802 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
9102867 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
*
9102932 GAACATGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
* *
9102997 AGTTCCAAGCGCCTTTTAGAAATTAATGGTTAAGTACAGAGCACGTGTTAGCAATTAACATCACG
326 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
* * *
9103062 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCAAGTGACAACGCTTGAGCTACTATCCTTGGAC
391 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
9103127 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
456 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
9103192 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
521 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
9103257 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
586 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
9103322 TAGTAATTAT
651 TAGTAATTAT
* *
9103332 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCTGAAAGCTCGGGATGAATAAT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
9103397 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
*
9103462 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAACTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
9103527 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
* * * *
9103592 GAGCATGTGCTTGTAATCAACTGATTGTGCAGCTCTGAGCGTTGTTATTAAGTAACGGATTGAGT
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
*
9103657 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCATGTGTTAGCAATTAACATCACG
326 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
*
9103722 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCACGCTTGAGCTACTATCCTTGGAC
391 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
*
9103787 TATCAGTACTTGTTATAGTTTCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
456 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
9103852 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
521 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
*
9103917 TCCATATGCACTTCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
586 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
9103982 TAGTAATTAT
651 TAGTAATTAT
*
9103992 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGACAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
9104057 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTTCTTTCCAATTTGCACCGCTCAGAGTAC
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTG-TTCTTTCCAATATGCACCGCTCAGAGTAC
** *
9104122 TAGTTATCTGAGTGTTGATTGATTGGAGAAACGTGTCAGTAATTATTGGATAGTAGTTATGAGCT
130 TAGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCT
* *
9104187 TTGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAAACGATTAAGTAGGTA
195 TTGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATA
* *
9104252 TGAACACGTGCTTGTAGTCAACTGATTATGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAG
260 TGAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAG
* * * *
9104317 TAGTTCCAAGCACCTTTTAGAAATTAATGGTCAAGTACTGATCACGTGTTAGCAATTTAACAGTT
325 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGC------A-A--T
*
9104382 TGAGTAGTTCAGATCACGTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACATGACCATGCTT
381 T-A--A---C--ATCACGTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTT
* *
9104447 GAGCTACTATCCTTGAACTATCAGTACTTG-T-TAGTTGCTCATGGAACTGGTTAAATGTTAGAG
438 GAGCTACTATCCTTGGACTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAG
* * *
9104510 CATAATAACTGTTTACTGATCCAGAAAGTTCGGGATGCATACTCTTGTTTGTCGTGCATGTGTTT
503 CATAATAACTGTTTACTGATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTT
9104575 CTTTCTCATTTTGTTCTTTCCATATGCAC--CTCAGATAAACTGTACTAGTTCACTGAC----GA
568 CTTTCTCATTTTGTTCTTTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGA
*
9104634 TTGATTGGTGAAACATGTTAGTAATTAT
633 TTGATTGGTGAAACTTGTTAGTAATTAT
9104662 TGGA
1 TGGA
9104666 GGGTAGTTTT
Statistics
Matches: 2561, Mismatches: 75, Indels: 27
0.96 0.03 0.01
Matches are distributed among these distances:
660 1736 0.68
661 555 0.22
667 1 0.00
668 1 0.00
670 35 0.01
671 1 0.00
673 1 0.00
674 28 0.01
676 122 0.05
677 1 0.00
678 80 0.03
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (660 bp):
TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
TAGTAATTAT
Found at i:9102926 original size:36 final size:36
Alignment explanation
Indices: 9102881--9102957 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
9102871 AGTCATTGAT
*
9102881 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
*
9102917 CGATTAAGTAGATATGAACATGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
9102953 TGATT
1 CGATT
9102958 GTGTAGCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:9103586 original size:36 final size:36
Alignment explanation
Indices: 9103541--9103617 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
9103531 AGTCATTGAT
9103541 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGACCACGTGCTT-GTAATCAAC
* *
9103577 CGATTAAGTAGATATGAGCATGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGACCACGTGCTTGTAATCAAC
*
9103613 TGATT
1 CGATT
9103618 GTGCAGCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.31
Consensus pattern (36 bp):
CGATTAAGTAGATATGACCACGTGCTTGTAATCAAC
Found at i:9104146 original size:180 final size:176
Alignment explanation
Indices: 9103812--9104171 Score: 428
Period size: 180 Copynumber: 2.0 Consensus size: 176
9103802 TAGTTTCTCA
* * * * *
9103812 TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTGATCCGGAAAGTTCGGGATGCATGCT
1 TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
* **
9103877 TTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTTTCCATATGCACTTCTCAGATAAACT
66 TTTGTTTGTCGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCATATGCACCGCTCAGAT-AACT
9103942 GTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGTTAGTAATTAT
130 GTACTAGTT--CTGA-AGTTGATTGATTGGTGAAACTTGTTAGTAATTAT
* * *
9103992 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGACAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
9104057 TGTT-TTTGAT-GTGCACGTGTTTCTTTCTCATTTTGTTTCTTTCCAATTTGCACCGCTCAG---
66 T-TTGTTTG-TCGTGCACGTGTTTCTTTCTCATTTTG-TTCTTTCC-ATATGCACCGCTCAGATA
* * * *
9104117 A--GTACTAGTTATCTGAGTGTTGATTGATTGGAGAAACGTGTCAGTAATTAT
127 ACTGTACTAG-T-TCTGA-AGTTGATTGATTGGTGAAACTTGTTAGTAATTAT
9104168 TGGA
1 TGGA
9104172 TAGTAGTTAT
Statistics
Matches: 157, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
176 45 0.29
177 1 0.01
178 2 0.01
180 86 0.55
181 11 0.07
182 12 0.08
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (176 bp):
TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
TTTGTTTGTCGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCATATGCACCGCTCAGATAACTG
TACTAGTTCTGAAGTTGATTGATTGGTGAAACTTGTTAGTAATTAT
Found at i:9104784 original size:36 final size:35
Alignment explanation
Indices: 9104732--9104849 Score: 98
Period size: 36 Copynumber: 3.4 Consensus size: 35
9104722 TCTAATCAAC
* * *
9104732 TGATTGTGTAGCTCTGAGCACATGTTAGTAATTAA
1 TGATTGAGTAGTTCTGAGCACATGTTAGAAATTAA
* * *
9104767 TGGATTGAGTAGTTCTGAGCACTTTTTTGAAATTAA
1 T-GATTGAGTAGTTCTGAGCACATGTTAGAAATTAA
* * *
9104803 TGATCGAGTA--T-TGAGCACGTGTTAGCAATTAA
1 TGATTGAGTAGTTCTGAGCACATGTTAGAAATTAA
* *
9104835 CAGTTTGAGTAGTTC
1 -TGATTGAGTAGTTC
9104850 CGATCATGTG
Statistics
Matches: 64, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
32 17 0.27
33 8 0.12
35 10 0.16
36 29 0.45
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (35 bp):
TGATTGAGTAGTTCTGAGCACATGTTAGAAATTAA
Found at i:9108639 original size:21 final size:21
Alignment explanation
Indices: 9108618--9108768 Score: 117
Period size: 21 Copynumber: 7.2 Consensus size: 21
9108608 CTTTCTATTT
*
9108618 AGCTCTTATGAGCTTTTGTTT
1 AGCTCTTATGAGCTTTTGTTC
* * * **
9108639 AACTCATACGAATTTTTGTTC
1 AGCTCTTATGAGCTTTTGTTC
* * *
9108660 AGCACTTACGAGCTTCTGTTC
1 AGCTCTTATGAGCTTTTGTTC
* * *
9108681 AACTCTTATGAGTTTTTGTTT
1 AGCTCTTATGAGCTTTTGTTC
* * *
9108702 AGCTCTTACGAGCTTCTATTC
1 AGCTCTTATGAGCTTTTGTTC
* *
9108723 AACTCTTATGAG-TTTCTGTTT
1 AGCTCTTATGAGCTTT-TGTTC
9108744 AGCTCTTATGAG-TTTCTGTTC
1 AGCTCTTATGAGCTTT-TGTTC
9108765 AGCT
1 AGCT
9108769 TTCGAGTCGA
Statistics
Matches: 98, Mismatches: 31, Indels: 2
0.75 0.24 0.02
Matches are distributed among these distances:
20 2 0.02
21 96 0.98
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (21 bp):
AGCTCTTATGAGCTTTTGTTC
Found at i:9108674 original size:42 final size:42
Alignment explanation
Indices: 9108622--9108765 Score: 135
Period size: 42 Copynumber: 3.4 Consensus size: 42
9108612 CTATTTAGCT
* * *
9108622 CTTATGAGCTTTTGTTTAACTCATACGAATTTTTGTTCAGCA
1 CTTACGAGCTTCTGTTCAACTCATACGAATTTTTGTTCAGCA
* * * * *
9108664 CTTACGAGCTTCTGTTCAACTCTTATGAGTTTTTGTTTAGCT
1 CTTACGAGCTTCTGTTCAACTCATACGAATTTTTGTTCAGCA
* * * * * * *
9108706 CTTACGAGCTTCTATTCAACTCTTATGAGTTTCTGTTTAGCT
1 CTTACGAGCTTCTGTTCAACTCATACGAATTTTTGTTCAGCA
* *
9108748 CTTATGAGTTTCTGTTCA
1 CTTACGAGCTTCTGTTCA
9108766 GCTTTCGAGT
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (42 bp):
CTTACGAGCTTCTGTTCAACTCATACGAATTTTTGTTCAGCA
Found at i:9108740 original size:63 final size:63
Alignment explanation
Indices: 9108620--9108768 Score: 163
Period size: 63 Copynumber: 2.4 Consensus size: 63
9108610 TTCTATTTAG
* * * * * *
9108620 CTCTTATGAGCTTTTGTTTAACTCATACGAATTTTTGTTCAGCACTTACGAGCTTCTGTTCAA
1 CTCTTATGAGTTTTTGTTTAGCTCATACGAACTTCTATTCAACACTTACGAGCTTCTGTTCAA
* * * * * * *
9108683 CTCTTATGAGTTTTTGTTTAGCTCTTACGAGCTTCTATTCAACTCTTATGAGTTTCTGTTTAG
1 CTCTTATGAGTTTTTGTTTAGCTCATACGAACTTCTATTCAACACTTACGAGCTTCTGTTCAA
* *
9108746 CTCTTATGAGTTTCTGTTCAGCT
1 CTCTTATGAGTTTTTGTTTAGCT
9108769 TTCGAGTCGA
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (63 bp):
CTCTTATGAGTTTTTGTTTAGCTCATACGAACTTCTATTCAACACTTACGAGCTTCTGTTCAA
Found at i:9124035 original size:29 final size:28
Alignment explanation
Indices: 9123975--9124035 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 28
9123965 AAGAAAATTG
* * *
9123975 TTTC-TTTCTTTAATTTTTTCATTTTTC
1 TTTCTTTTCTTTAATCTTTTCAATTTTA
*
9124002 CTTCTTTTCTTTCAATCTTTTCAATTTTA
1 TTTCTTTTCTTT-AATCTTTTCAATTTTA
9124031 TTTCT
1 TTTCT
9124036 AATCTTCTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 3 0.11
28 7 0.26
29 17 0.63
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.69
Consensus pattern (28 bp):
TTTCTTTTCTTTAATCTTTTCAATTTTA
Found at i:9131558 original size:225 final size:225
Alignment explanation
Indices: 9131167--9131610 Score: 755
Period size: 225 Copynumber: 2.0 Consensus size: 225
9131157 ACCTACTAAC
* *
9131167 TCAATATTCCTACAACACGAAACATCCTTAACTAGCTGGATTGTCAACAATACATTGATTCCACC
1 TCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGATTGCCAACAATACATTGATTCCACC
*
9131232 CCTTATGTCTCGACTCACCAATACAACACATTATTGTTGTCAGGTATTCAAGATACATATACAAT
66 CCTTATGTCTCGACTCACCAATACAACACATTATTGTTGTCAGGAATTCAAGATACATATACAAT
* * *
9131297 CAACAAAAAGAACTAATAAAACATTAATATTATCAAGGAAATTTAAGCCAAGAACGAAGTTGAAA
131 CAACAAAAAGAACTAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAAA
*
9131362 TCATCCAAGTGAATGACCTCAAAAGGCTTG
196 TCATCCAAGTGAACGACCTCAAAAGGCTTG
*
9131392 TCAATATTCCTACAACACAAAACATCTTTAACTAGCTGGATTGCCAACAATACATTGATTCCACC
1 TCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGATTGCCAACAATACATTGATTCCACC
* * *
9131457 CCTTATGTCTTGACTCACCAATACAACACATTATTGTTTTCGGGAATTCAAGATACATATACAAT
66 CCTTATGTCTCGACTCACCAATACAACACATTATTGTTGTCAGGAATTCAAGATACATATACAAT
* *
9131522 CGAA-AAAAAGAACTAATAAAGCATTAATATTATCAAGGAAATTCAAGCTAAGAACAAAGTCGAA
131 C-AACAAAAAGAACTAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
9131586 ATCATCCAAGTGAACGACCTCAAAA
195 ATCATCCAAGTGAACGACCTCAAAA
9131611 CCTTTATTAT
Statistics
Matches: 205, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
225 203 0.99
226 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.26
Consensus pattern (225 bp):
TCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGATTGCCAACAATACATTGATTCCACC
CCTTATGTCTCGACTCACCAATACAACACATTATTGTTGTCAGGAATTCAAGATACATATACAAT
CAACAAAAAGAACTAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAAA
TCATCCAAGTGAACGACCTCAAAAGGCTTG
Found at i:9132495 original size:31 final size:31
Alignment explanation
Indices: 9132453--9132518 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
9132443 ATAAATTACA
*
9132453 ATTT-AGTCACTAAATTATTTGAAAA-TTTTC
1 ATTTAAGTCACTAAACTATTT-AAAAGTTTTC
*
9132483 ATTTAAGTCACTAAACTATTTAAAAGTTTTT
1 ATTTAAGTCACTAAACTATTTAAAAGTTTTC
9132514 ATTTA
1 ATTTA
9132519 TATGATTAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 8 0.25
31 24 0.75
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (31 bp):
ATTTAAGTCACTAAACTATTTAAAAGTTTTC
Found at i:9139503 original size:14 final size:14
Alignment explanation
Indices: 9139484--9139515 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
9139474 GTCGCTTCAC
9139484 CACACTTCACATGG
1 CACACTTCACATGG
*
9139498 CACACTTCGCATGG
1 CACACTTCACATGG
9139512 CACA
1 CACA
9139516 ACAAGCATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.28, C:0.38, G:0.16, T:0.19
Consensus pattern (14 bp):
CACACTTCACATGG
Found at i:9141107 original size:18 final size:18
Alignment explanation
Indices: 9141084--9141121 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
9141074 ACACAATAAA
9141084 ATATGTCAATAACAAAAT
1 ATATGTCAATAACAAAAT
*
9141102 ATATGTCAATAACACAAT
1 ATATGTCAATAACAAAAT
9141120 AT
1 AT
9141122 TTTCACAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.13, G:0.05, T:0.29
Consensus pattern (18 bp):
ATATGTCAATAACAAAAT
Found at i:9145165 original size:16 final size:16
Alignment explanation
Indices: 9145140--9145185 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
9145130 GTCTAGGCTG
*
9145140 GGTTTGGGGTGTTTAA
1 GGTTTAGGGTGTTTAA
*
9145156 GGTTTAGGGTGTTTAG
1 GGTTTAGGGTGTTTAA
9145172 GGTTTAGGGT-TTTA
1 GGTTTAGGGTGTTTA
9145186 GTAAAGTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
15 4 0.14
16 24 0.86
ACGTcount: A:0.13, C:0.00, G:0.41, T:0.46
Consensus pattern (16 bp):
GGTTTAGGGTGTTTAA
Found at i:9156013 original size:21 final size:21
Alignment explanation
Indices: 9155983--9156030 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
9155973 ACTGCATCAG
*
9155983 AAAATTTAAAAAATAAAAAAT-
1 AAAATCTAAAAAA-AAAAAATC
*
9156004 AAAATCTAAAAAAAAAGAATC
1 AAAATCTAAAAAAAAAAAATC
9156025 AAAATC
1 AAAATC
9156031 ATTTATGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (21 bp):
AAAATCTAAAAAAAAAAAATC
Found at i:9160781 original size:65 final size:62
Alignment explanation
Indices: 9160712--9160835 Score: 167
Period size: 62 Copynumber: 2.0 Consensus size: 62
9160702 CATCAGGGAT
*
9160712 TTTTTTCATGTCCCAATGCAATTTATTTTTTTTACTTTTCTACACTAATAGCCGACACCAAAGAC
1 TTTTTTCATGTCCCAATACAA--T-TTTTTTTTACTTTTCTACACTAATAGCCGACACCAAAGAC
** * * *
9160777 TTTTTTTGTGTCCCAATACAATTTTTTTTTACTTTTCTACACTGATGGCCGGCACCAAA
1 TTTTTTCATGTCCCAATACAATTTTTTTTTACTTTTCTACACTAATAGCCGACACCAAA
9160836 CCAGTAATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
62 34 0.64
63 1 0.02
65 18 0.34
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.43
Consensus pattern (62 bp):
TTTTTTCATGTCCCAATACAATTTTTTTTTACTTTTCTACACTAATAGCCGACACCAAAGAC
Found at i:9160913 original size:48 final size:48
Alignment explanation
Indices: 9160848--9161106 Score: 262
Period size: 47 Copynumber: 5.5 Consensus size: 48
9160838 AGTAATTTTT
9160848 TTTTTGTTCTAGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAA
1 TTTTTGTTCTAGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAA
* * *
9160896 TTTTTGTTCTAGCCTTCTAATGGCTGCCACTACACTAGTAAAAAAAAA
1 TTTTTGTTCTAGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAA
* * * * *
9160944 -ATTGGTTCTCGCATTCTAATGGCCAGCACCACACTAGTAAAAAAAAA
1 TTTTTGTTCTAGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAA
* * * *****
9160991 ATTTTGATT-TTGTCCTTCTAATAGCCGGCACCACACTAGT--AATTTTT
1 TTTTTG-TTCTAG-CCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAA
** *
9161038 TTTTTGTTCT-GCCCTTCTAATGGTTGGCACCATACTAGT-AAAAAAAA
1 TTTTTGTTCTAG-CCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAA
*
9161085 -TTTGGTTCTAGCCTTCTAATGG
1 TTTTTGTTCTAGCCTTCTAATGG
9161107 TTGGTACTAC
Statistics
Matches: 171, Mismatches: 34, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
46 45 0.26
47 50 0.29
48 50 0.29
49 26 0.15
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (48 bp):
TTTTTGTTCTAGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAA
Found at i:9161093 original size:46 final size:46
Alignment explanation
Indices: 9160853--9161106 Score: 233
Period size: 46 Copynumber: 5.4 Consensus size: 46
9160843 TTTTTTTTTT
*
9160853 GTTCTAGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTTT
1 GTTCT-GCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAA-TTTG
* * * *
9160901 GTTCTAGCCTTCTAATGGCTGCCACTACACTAGTAAAAAAAAAATTG
1 GTTCT-GCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTG
* *
9160948 GTTCTCGCATTCTAATGGCCAGCACCACACTAGTAAAAAAAAAATTTTG
1 GTTCT-GCCTTCTAATGGCCGGCACCACACTAGT-AAAAAAAAA-TTTG
* * * ****** *
9160997 ATTTTGTCCTTCTAATAGCCGGCACCACACTAGT-AATTTTTTTTTT
1 GTTCTG-CCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTG
** *
9161043 GTTCTGCCCTTCTAATGGTTGGCACCATACTAGT-AAAAAAAATTTG
1 GTTCTG-CCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTG
9161089 GTTCTAGCCTTCTAATGG
1 GTTCT-GCCTTCTAATGG
9161107 TTGGTACTAC
Statistics
Matches: 164, Mismatches: 38, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
46 51 0.31
47 33 0.20
48 50 0.30
49 30 0.18
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.33
Consensus pattern (46 bp):
GTTCTGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTG
Found at i:9161126 original size:46 final size:47
Alignment explanation
Indices: 9160853--9161106 Score: 246
Period size: 48 Copynumber: 5.4 Consensus size: 47
9160843 TTTTTTTTTT
*
9160853 GTTCTAGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTTT
1 GTTCTAGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAA-TTTG
* * * *
9160901 GTTCTAGCCTTCTAATGGCTGCCACTACACTAGTAAAAAAAAAATTG
1 GTTCTAGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTG
* * *
9160948 GTTCTCGCATTCTAATGGCCAGCACCACACTAGTAAAAAAAAAATTTTG
1 GTTCTAGCCTTCTAATGGCCGGCACCACACTAGT-AAAAAAAAA-TTTG
* * * ****** *
9160997 ATT-TTGTCCTTCTAATAGCCGGCACCACACTAGT-AATTTTTTTTTT
1 GTTCTAG-CCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTG
** *
9161043 GTTCT-GCCCTTCTAATGGTTGGCACCATACTAGT-AAAAAAAATTTG
1 GTTCTAG-CCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTG
9161089 GTTCTAGCCTTCTAATGG
1 GTTCTAGCCTTCTAATGG
9161107 TTGGTACTAC
Statistics
Matches: 164, Mismatches: 37, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
46 50 0.30
47 34 0.21
48 51 0.31
49 29 0.18
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.33
Consensus pattern (47 bp):
GTTCTAGCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTG
Found at i:9161132 original size:95 final size:96
Alignment explanation
Indices: 9160841--9161134 Score: 298
Period size: 95 Copynumber: 3.1 Consensus size: 96
9160831 CCAAACCAGT
*
9160841 AATTTTTTTTTTGTTCTAG-CCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTTTGTTC
1 AATTTTTTTTTTGTTCT-GCCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTTGGTTC
*
9160905 TAGCCTTCTAATGGCTGCCACTACACTAGTAA
65 TAGCCTTCTAATGGCTGGCACTACACTAGTAA
****** * * * *
9160937 AA-AAAAAATTGGTTCT-CGCATTCTAATGGCCAGCACCACACTAGTAAAAAAAAAATTTTGATT
1 AATTTTTTTTTTGTTCTGC-CCTTCTAATGGCCGGCACCACACTAGT-AAAAAAAAATTTTGGTT
* * * *
9161000 -TTGTCCTTCTAATAGCCGGCACCACACTAGT--
64 CTAG-CCTTCTAATGGCTGGCACTACACTAGTAA
** *
9161031 AATTTTTTTTTTGTTCTGCCCTTCTAATGGTTGGCACCATACTAGT-AAAAAAAA-TTTGGTTCT
1 AATTTTTTTTTTGTTCTGCCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTTGGTTCT
* * *
9161094 AGCCTTCTAATGGTTGGTACTACATTAGTAA
66 AGCCTTCTAATGGCTGGCACTACACTAGTAA
9161125 AATTTTTTTT
1 AATTTTTTTT
9161135 AAAAAAATTA
Statistics
Matches: 153, Mismatches: 36, Indels: 20
0.73 0.17 0.10
Matches are distributed among these distances:
92 27 0.18
93 10 0.07
94 12 0.08
95 63 0.41
96 41 0.27
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (96 bp):
AATTTTTTTTTTGTTCTGCCCTTCTAATGGCCGGCACCACACTAGTAAAAAAAAATTTTGGTTCT
AGCCTTCTAATGGCTGGCACTACACTAGTAA
Found at i:9161623 original size:138 final size:136
Alignment explanation
Indices: 9161337--9161602 Score: 346
Period size: 138 Copynumber: 2.0 Consensus size: 136
9161327 AAGGCCAGAA
*
9161337 CCAAAAAAAAAAATTACTAGTGTGGTGCCGGCCATTACAAGACCAGAACTAATTTTTTTAAATAC
1 CCAAAAAAAAAAATTACTAGTGTGGTGCCGGCCATTACAAGACCAGAACAAATTTTTTTAAATAC
* ** * * *
9161402 TGGTATTTTTGTATACCAGTGTGATACGATTTTAAAAAAAATACCATAGTCCCTGCTGCTGGCCA
66 TAGTATTTTTGTATACCAGTACGATACGAATTT-AAAAAAATA-CATAGTCCCTGATGCTGACCA
*
9161467 TTAGAAGG
129 TTAGAAGC
* *
9161475 CCAAAAAAAAAAATTACTAGTGTGGTGCCGGCCATTACAAGGCCAGATCCAAATTTTTTTTTTAA
1 CCAAAAAAAAAAATTACTAGTGTGGTGCCGGCCATTACAAGACCAGA-ACAAA---TTTTTTTAA
9161540 ATACTAGTATTTTTGTATACCAGTACGATAC-AATTT-AAAAAA-A-ATA-T-CCTGATGCTGAC
62 ATACTAGTATTTTTGTATACCAGTACGATACGAATTTAAAAAAATACATAGTCCCTGATGCTGAC
9161599 CATT
127 CATT
9161603 GGATTCCCAA
Statistics
Matches: 115, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
134 14 0.12
135 1 0.01
136 3 0.03
138 47 0.41
139 9 0.08
141 4 0.03
142 37 0.32
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.31
Consensus pattern (136 bp):
CCAAAAAAAAAAATTACTAGTGTGGTGCCGGCCATTACAAGACCAGAACAAATTTTTTTAAATAC
TAGTATTTTTGTATACCAGTACGATACGAATTTAAAAAAATACATAGTCCCTGATGCTGACCATT
AGAAGC
Found at i:9164816 original size:20 final size:20
Alignment explanation
Indices: 9164788--9164825 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9164778 AAAAATAATT
9164788 ATAACTATTATATATATTAA
1 ATAACTATTATATATATTAA
* *
9164808 ATAATTATTATTTATATT
1 ATAACTATTATATATATT
9164826 TATATTAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
ATAACTATTATATATATTAA
Found at i:9165105 original size:19 final size:20
Alignment explanation
Indices: 9165079--9165124 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
9165069 AAATATATAA
9165079 ATAAAAATACATA-AATTTTT
1 ATAAAAAT-CATAGAATTTTT
*
9165099 A-AAAAATTATAGAATTTTT
1 ATAAAAATCATAGAATTTTT
9165118 ATAAAAA
1 ATAAAAA
9165125 ATATATTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 3 0.13
19 14 0.61
20 6 0.26
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (20 bp):
ATAAAAATCATAGAATTTTT
Found at i:9168641 original size:24 final size:24
Alignment explanation
Indices: 9168614--9168659 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
9168604 AATGTTCATT
9168614 TTGACACTTGAATTTTTTTTTAAC
1 TTGACACTTGAATTTTTTTTTAAC
* *
9168638 TTGATACTTGAGTTTTTTTTTA
1 TTGACACTTGAATTTTTTTTTA
9168660 TCCTAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.22, C:0.09, G:0.11, T:0.59
Consensus pattern (24 bp):
TTGACACTTGAATTTTTTTTTAAC
Found at i:9169638 original size:9 final size:9
Alignment explanation
Indices: 9169624--9169652 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
9169614 AATTAAATAG
9169624 TTTGAGTTA
1 TTTGAGTTA
9169633 TTTGAGTTA
1 TTTGAGTTA
9169642 TTTGAGTTA
1 TTTGAGTTA
9169651 TT
1 TT
9169653 CGGATAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (9 bp):
TTTGAGTTA
Found at i:9171473 original size:24 final size:23
Alignment explanation
Indices: 9171446--9171490 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
9171436 AATGATAGTA
*
9171446 TTGCATCGAAGTGTCACATTTCGG
1 TTGCACCGAAGTGTCAC-TTTCGG
9171470 TTGCACCGAAGTGTCACTTTC
1 TTGCACCGAAGTGTCACTTTC
9171491 ATTTTCACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (23 bp):
TTGCACCGAAGTGTCACTTTCGG
Found at i:9182383 original size:22 final size:23
Alignment explanation
Indices: 9182350--9182392 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
9182340 ACATAACACG
9182350 TTGAGTATTTATT-TTTTAAACC
1 TTGAGTATTTATTGTTTTAAACC
9182372 TTGA-TATATTATTGTTTTAAA
1 TTGAGTAT-TTATTGTTTTAAA
9182393 AATAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 3 0.16
22 9 0.47
23 7 0.37
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.56
Consensus pattern (23 bp):
TTGAGTATTTATTGTTTTAAACC
Found at i:9196599 original size:22 final size:19
Alignment explanation
Indices: 9196551--9196600 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
9196541 CCGTTATTAG
*
9196551 TTTGATTGTAATGATTGAA
1 TTTGATTATAATGATTGAA
*
9196570 TTTGATTATAATTATTCGAA
1 TTTGATTATAATGATT-GAA
9196590 TATTGTATTAT
1 T-TTG-ATTAT
9196601 TTGTGAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 14 0.54
20 4 0.15
21 3 0.12
22 5 0.19
ACGTcount: A:0.32, C:0.02, G:0.14, T:0.52
Consensus pattern (19 bp):
TTTGATTATAATGATTGAA
Found at i:9198458 original size:13 final size:13
Alignment explanation
Indices: 9198440--9198472 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
9198430 ATTTTGTGGA
9198440 TAAAAAATATTTT
1 TAAAAAATATTTT
9198453 T-AAAAATATTTT
1 TAAAAAATATTTT
9198465 TAATAAAA
1 TAA-AAAA
9198473 ATAATTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.67
13 2 0.11
14 4 0.22
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
TAAAAAATATTTT
Found at i:9198459 original size:12 final size:12
Alignment explanation
Indices: 9198442--9198467 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9198432 TTTGTGGATA
9198442 AAAAATATTTTT
1 AAAAATATTTTT
9198454 AAAAATATTTTT
1 AAAAATATTTTT
9198466 AA
1 AA
9198468 TAAAAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
AAAAATATTTTT
Found at i:9198692 original size:22 final size:20
Alignment explanation
Indices: 9198653--9198692 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
9198643 TCAGTTCCTC
*
9198653 TTTTTTTCCATTTTCTTTAA
1 TTTTTTTCCATTTCCTTTAA
9198673 TTTTTTTCCACCTTTCCTTT
1 TTTTTTTCCA--TTTCCTTT
9198693 TTTACTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
22 7 0.41
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTTTCCATTTCCTTTAA
Found at i:9198764 original size:3 final size:3
Alignment explanation
Indices: 9198744--9198777 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
9198734 TCTCCCTTAC
* *
9198744 TCT TTT TCT TCT TTT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
9198778 TTTTTTTTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (3 bp):
TCT
Found at i:9207973 original size:11 final size:11
Alignment explanation
Indices: 9207957--9208015 Score: 73
Period size: 11 Copynumber: 5.2 Consensus size: 11
9207947 CATTATATAC
9207957 TAATAAAATAA
1 TAATAAAATAA
9207968 TAATAAAATAA
1 TAATAAAATAA
*
9207979 TAATAAAATATCT
1 TAATAAAATA--A
* *
9207992 TATTAAAATAT
1 TAATAAAATAA
9208003 TAATAAAATAA
1 TAATAAAATAA
9208014 TA
1 TA
9208016 TTTATCTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
11 33 0.79
13 9 0.21
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:9208935 original size:186 final size:186
Alignment explanation
Indices: 9208621--9209181 Score: 1095
Period size: 186 Copynumber: 3.0 Consensus size: 186
9208611 ACATACCAAA
9208621 ATTATTGGTACCATCAAATTTCTCTACTTCAAATTTTGTATTGGTCACAGTAGTCTTTGCTGATG
1 ATTATTGGTACCATCAAATTTCTCTACTTCAAATTTTGTATTGGTCACAGTAGTCTTTGCTGATG
9208686 ACGATGCCTTTGCCATTTTTCTCCTCAATCCCAACTACTGTATATGTGAACAGTATCGTTAATGT
66 ACGATGCCTTTGCCATTTTTCTCCTCAATCCCAACTACTGTATATGTGAACAGTATCGTTAATGT
9208751 GAATAGTGCCATGGATGAACAATACCGTATACGTAAATAGTATCGTAAACGATCGT
131 GAATAGTGCCATGGATGAACAATACCGTATACGTAAATAGTATCGTAAACGATCGT
9208807 ATTATTGGTACCATCAAATTTCTCTACTTCAAATTTTGTATTGGTCACAGTAGTCTTTGCTGATG
1 ATTATTGGTACCATCAAATTTCTCTACTTCAAATTTTGTATTGGTCACAGTAGTCTTTGCTGATG
*
9208872 ACGATGCCTTTGCCATTTTTCTCCTCAATCCCAACTACTGTATATGTGAACAGTATTGTTAATGT
66 ACGATGCCTTTGCCATTTTTCTCCTCAATCCCAACTACTGTATATGTGAACAGTATCGTTAATGT
9208937 GAATAGTGCCATGGATGAACAATACCGTATACGTAAATAGTATCGTAAACGATCGT
131 GAATAGTGCCATGGATGAACAATACCGTATACGTAAATAGTATCGTAAACGATCGT
9208993 ATTATTGGTACCATCAAATTTCTCTACTTCAAATTTTGTATTGGTCACAGTAGTCTTTGCTGATG
1 ATTATTGGTACCATCAAATTTCTCTACTTCAAATTTTGTATTGGTCACAGTAGTCTTTGCTGATG
*
9209058 ACGATGCCTTTGCCATTTTTCTCCTCAATCCCAACTACTGTATATGTGAACAGTATCGTTAATAT
66 ACGATGCCTTTGCCATTTTTCTCCTCAATCCCAACTACTGTATATGTGAACAGTATCGTTAATGT
*
9209123 GAATAGTGCCATGGATGAACAATACCGTATACGTAAATAGTATTGTAAACGATCGT
131 GAATAGTGCCATGGATGAACAATACCGTATACGTAAATAGTATCGTAAACGATCGT
9209179 ATT
1 ATT
9209182 CCCTAAGTAT
Statistics
Matches: 371, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
186 371 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (186 bp):
ATTATTGGTACCATCAAATTTCTCTACTTCAAATTTTGTATTGGTCACAGTAGTCTTTGCTGATG
ACGATGCCTTTGCCATTTTTCTCCTCAATCCCAACTACTGTATATGTGAACAGTATCGTTAATGT
GAATAGTGCCATGGATGAACAATACCGTATACGTAAATAGTATCGTAAACGATCGT
Found at i:9210249 original size:2 final size:2
Alignment explanation
Indices: 9210242--9210269 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
9210232 TAACATAAAA
9210242 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9210270 CATATATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:9219411 original size:34 final size:35
Alignment explanation
Indices: 9219272--9219430 Score: 223
Period size: 35 Copynumber: 4.6 Consensus size: 35
9219262 ATTGAAATGT
* * * *
9219272 CATACTTACATTTCACAACTCGGTATGGGA-AATGC
1 CATACCTACGTTTCACAACTCAGTAT-GGATAATAC
**
9219307 CATACCTACGTTTCTTAACTCAGTATGGATAATAC
1 CATACCTACGTTTCACAACTCAGTATGGATAATAC
*
9219342 CATACCTACGTTTCACAACTCAGTATGGTTAATAC
1 CATACCTACGTTTCACAACTCAGTATGGATAATAC
*
9219377 CATACCTACGTTTCACAACT-AGTATGGATGATAC
1 CATACCTACGTTTCACAACTCAGTATGGATAATAC
9219411 CATACCTACGTTTCACAACT
1 CATACCTACGTTTCACAACT
9219431 TTGCCATGGA
Statistics
Matches: 112, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
34 35 0.31
35 77 0.69
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (35 bp):
CATACCTACGTTTCACAACTCAGTATGGATAATAC
Found at i:9219723 original size:16 final size:16
Alignment explanation
Indices: 9219702--9219732 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9219692 CTTTTCCTCA
9219702 TTCGTCTTTTGATTCG
1 TTCGTCTTTTGATTCG
9219718 TTCGTCTTTTGATTC
1 TTCGTCTTTTGATTC
9219733 TTGATCTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.19, G:0.16, T:0.58
Consensus pattern (16 bp):
TTCGTCTTTTGATTCG
Found at i:9224324 original size:14 final size:14
Alignment explanation
Indices: 9224302--9224335 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
9224292 CAATGCAAAA
9224302 TTCTCTTTTTTT-TT
1 TTCT-TTTTTTTCTT
9224316 TTCTTTTTTTTCTT
1 TTCTTTTTTTTCTT
9224330 TTCTTT
1 TTCTTT
9224336 ATATGTTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTCTTTTTTTTCTT
Found at i:9224811 original size:6 final size:7
Alignment explanation
Indices: 9224793--9224820 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
9224783 GTAACTTCTG
9224793 GAAAAAA
1 GAAAAAA
9224800 GAAAAAA
1 GAAAAAA
9224807 GAAAAAA
1 GAAAAAA
9224814 GAAAAAA
1 GAAAAAA
9224821 TGCTTTTGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:9232403 original size:24 final size:23
Alignment explanation
Indices: 9232376--9232435 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
9232366 TAGAGGTGAG
9232376 GAGAAAAGAAAAAGGAGGAGAAAA
1 GAGAAAAGAAAAAGGA-GAGAAAA
** *
9232400 GAGAAATA-AAAGTGGAGAGAAAT
1 GAGAAA-AGAAAAAGGAGAGAAAA
9232423 GAAGAAAAGAAAA
1 G-AGAAAAGAAAA
9232436 GAGAAAGAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
23 8 0.28
24 20 0.69
25 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.05
Consensus pattern (23 bp):
GAGAAAAGAAAAAGGAGAGAAAA
Found at i:9232488 original size:34 final size:34
Alignment explanation
Indices: 9232424--9232489 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
9232414 GAGAGAAATG
* *
9232424 AAGAAAAGAAAAGAGAAAGAGAGGAGAAAGGGGA
1 AAGAAAAGAAAAGAAAAAGAGAAGAGAAAGGGGA
9232458 AAGAAAAG-AAAGAAAAATGGAGAAGA-AAAGGG
1 AAGAAAAGAAAAGAAAAA--GAGAAGAGAAAGGG
9232490 TGGTTGGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 8 0.29
34 14 0.50
35 6 0.21
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (34 bp):
AAGAAAAGAAAAGAAAAAGAGAAGAGAAAGGGGA
Found at i:9246814 original size:16 final size:17
Alignment explanation
Indices: 9246793--9246829 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
9246783 ACTTGAAATT
9246793 TATTAAAT-TATTAAAA
1 TATTAAATATATTAAAA
*
9246809 TATTAATTATATTAAAA
1 TATTAAATATATTAAAA
9246826 -ATTA
1 TATTA
9246830 TAAGATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TATTAAATATATTAAAA
Found at i:9252144 original size:5 final size:5
Alignment explanation
Indices: 9252123--9252175 Score: 56
Period size: 5 Copynumber: 10.6 Consensus size: 5
9252113 AAGAAATTGT
* *
9252123 TATTA TATGA TA-T- TATTA TATTA TAGTA TATTA TATTATA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TA-T-TA TATTA TATTA
9252173 TAT
1 TAT
9252176 AAATAAGTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
3 2 0.05
4 1 0.03
5 31 0.77
6 2 0.05
7 4 0.10
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:9252156 original size:15 final size:14
Alignment explanation
Indices: 9252123--9252176 Score: 69
Period size: 13 Copynumber: 4.0 Consensus size: 14
9252113 AAGAAATTGT
*
9252123 TATTATATGATAT-
1 TATTATATTATATA
9252136 TATTATATTATAGTA
1 TATTATATTATA-TA
9252151 TATTATA-T-TATA
1 TATTATATTATATA
9252163 TATTATATTATATA
1 TATTATATTATATA
9252177 AATAAGTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
12 9 0.25
13 14 0.39
14 6 0.17
15 7 0.19
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (14 bp):
TATTATATTATATA
Found at i:9252166 original size:12 final size:12
Alignment explanation
Indices: 9252123--9252176 Score: 63
Period size: 12 Copynumber: 4.2 Consensus size: 12
9252113 AAGAAATTGT
*
9252123 TATTATATGATA
1 TATTATATTATA
9252135 TTATTATATTATAGTA
1 -TATTATA-T-TA-TA
9252151 TATTATATTATA
1 TATTATATTATA
9252163 TATTATATTATA
1 TATTATATTATA
9252175 TA
1 TA
9252177 AATAAGTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
12 16 0.43
13 9 0.24
14 2 0.05
15 8 0.22
16 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (12 bp):
TATTATATTATA
Found at i:9253291 original size:15 final size:15
Alignment explanation
Indices: 9253271--9253327 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
9253261 CGATGAATTT
9253271 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
9253286 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
9253301 ATTGAATTTATATTG
1 ATTGAATTTATATTG
9253316 ATTGAA-TTATAT
1 ATTGAATTTATAT
9253328 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:9253772 original size:21 final size:21
Alignment explanation
Indices: 9253712--9253806 Score: 120
Period size: 21 Copynumber: 4.5 Consensus size: 21
9253702 AGGCACTTTA
9253712 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
9253735 TGTGTCGTATC-GGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
9253755 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
9253776 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
9253797 TGTGTCGTAT
1 TGTGTCGTAT
9253807 ACTGATCAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
20 20 0.31
21 36 0.55
23 9 0.14
ACGTcount: A:0.13, C:0.23, G:0.27, T:0.37
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:9256690 original size:103 final size:103
Alignment explanation
Indices: 9256507--9256697 Score: 233
Period size: 103 Copynumber: 1.9 Consensus size: 103
9256497 CTACGGAGAC
* * *
9256507 TTTGGTGTGATGAAGGGATGATATAATACATGACATGTAATAGTGCCTACGAGCTTTACATTACG
1 TTTGGTGTGATGAAGGGATGATACAATACATGACACGTAATAGTGCCTACGAGCTTTACACTACG
*
9256572 GTGCATTGATATGGTGTAGTTATCACTCTTTTGAGCTA
66 GTGCATCGATATGGTGTAGTTATCACTCTTTTGAGCTA
* * * * * *
9256610 TTTGGTGTGGTGGAGGGATGATACATTACATGATACG-ATATTGTGCCTAC-AGGCTTTGCACTA
1 TTTGGTGTGATGAAGGGATGATACAATACATGACACGTA-ATAGTGCCTACGA-GCTTTACACTA
* * *
9256673 TGGTGCCTCGATGTGGTGTAGTTAT
64 CGGTGCATCGATATGGTGTAGTTAT
9256698 TGAGCTACCT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
102 2 0.03
103 71 0.97
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (103 bp):
TTTGGTGTGATGAAGGGATGATACAATACATGACACGTAATAGTGCCTACGAGCTTTACACTACG
GTGCATCGATATGGTGTAGTTATCACTCTTTTGAGCTA
Found at i:9260846 original size:20 final size:20
Alignment explanation
Indices: 9260819--9260876 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
9260809 ATATTGGTTA
9260819 GCACTTTGGTGCCTCTGTTT
1 GCACTTTGGTGCCTCTGTTT
*
9260839 GTACTTTGGTGTCC-CTGTTT
1 GCACTTTGGTG-CCTCTGTTT
*
9260859 GCACTTCGGTGCCTCTGT
1 GCACTTTGGTGCCTCTGT
9260877 ATAGCATTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 2 0.06
20 29 0.88
21 2 0.06
ACGTcount: A:0.05, C:0.26, G:0.26, T:0.43
Consensus pattern (20 bp):
GCACTTTGGTGCCTCTGTTT
Found at i:9270190 original size:13 final size:13
Alignment explanation
Indices: 9270168--9270200 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9270158 ATTAAATTAG
9270168 ATTT-TTTTAATA
1 ATTTATTTTAATA
*
9270180 TTTTATTTTAATA
1 ATTTATTTTAATA
9270193 ATTTATTT
1 ATTTATTT
9270201 AATTAAATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 3 0.17
13 15 0.83
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTATTTTAATA
Found at i:9279138 original size:21 final size:19
Alignment explanation
Indices: 9279113--9279157 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
9279103 TCAATATAAA
9279113 TTTTAAAATTATTATTAT-TAT
1 TTTTAAAA-TA-T-TTATGTAT
9279134 TTTTAAAATATTTATGTAT
1 TTTTAAAATATTTATGTAT
9279153 TTTTA
1 TTTTA
9279158 TACATTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.17
19 9 0.39
20 2 0.09
21 8 0.35
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTAAAATATTTATGTAT
Found at i:9282789 original size:16 final size:15
Alignment explanation
Indices: 9282763--9282792 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
9282753 CTACATACAC
9282763 AAAGTTGTTCTTTGA
1 AAAGTTGTTCTTTGA
9282778 AAAGTATGTTCTTTG
1 AAAGT-TGTTCTTTG
9282793 CTTGCGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.47
Consensus pattern (15 bp):
AAAGTTGTTCTTTGA
Found at i:9284545 original size:40 final size:41
Alignment explanation
Indices: 9284451--9284546 Score: 101
Period size: 40 Copynumber: 2.4 Consensus size: 41
9284441 AAACGCGTCT
* * *
9284451 CTGAGGGA-GCGTTTTGTCCATGTCAGGACAAAGCGCTTCC
1 CTGAGGGACGCGTTTTGTCCATGACAGGACAAAACGCTCCC
* * *
9284491 TTGAGGG-CGTGTTTTGTGC-TGACATGGACAAAACGCTCCC
1 CTGAGGGACGCGTTTTGTCCATGACA-GGACAAAACGCTCCC
9284531 CT-AGGGACGCGTTTTG
1 CTGAGGGACGCGTTTTG
9284547 CCCCACTCCA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
39 8 0.18
40 37 0.82
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (41 bp):
CTGAGGGACGCGTTTTGTCCATGACAGGACAAAACGCTCCC
Found at i:9284675 original size:10 final size:10
Alignment explanation
Indices: 9284642--9284683 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
9284632 CCTCTCATAG
9284642 TTCTCTCTAAA
1 TTCTCTC-AAA
9284653 TTCTCTCCAAA
1 TTCTCT-CAAA
9284664 TTCTCTCAAA
1 TTCTCTCAAA
*
9284674 TTTTCTCAAA
1 TTCTCTCAAA
9284684 GCTCTCTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 13 0.45
11 15 0.52
12 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (10 bp):
TTCTCTCAAA
Found at i:9286503 original size:18 final size:18
Alignment explanation
Indices: 9286480--9286522 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
9286470 TGCCAGGTGC
* *
9286480 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCCTATAT
9286498 GTATCCTAACCCCTATAT
1 GTATCCTAACCCCTATAT
*
9286516 GTTTCCT
1 GTATCCT
9286523 TTTCCGAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.30, G:0.09, T:0.40
Consensus pattern (18 bp):
GTATCCTAACCCCTATAT
Found at i:9286702 original size:22 final size:23
Alignment explanation
Indices: 9286677--9286721 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
9286667 CTATTGCCTT
9286677 ATGGG-ATACAAACACCTCTGCC
1 ATGGGAATACAAACACCTCTGCC
*
9286699 ATGGGTAATGCAAACACCTCTGC
1 ATGGG-AATACAAACACCTCTGC
9286722 ATTCATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
24 15 0.75
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (23 bp):
ATGGGAATACAAACACCTCTGCC
Found at i:9294923 original size:27 final size:27
Alignment explanation
Indices: 9294885--9294938 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
9294875 CCGGAATAAG
9294885 GTATAATATAGCCTTCCAAACACACCA
1 GTATAATATAGCCTTCCAAACACACCA
9294912 GTATAATATAGCCTTCCAAACACACCA
1 GTATAATATAGCCTTCCAAACACACCA
9294939 ATAATGCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.30, G:0.07, T:0.22
Consensus pattern (27 bp):
GTATAATATAGCCTTCCAAACACACCA
Found at i:9296477 original size:24 final size:24
Alignment explanation
Indices: 9296414--9296478 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
9296404 TATCCATTAA
* *
9296414 ATAATCATAA-TAATTAT-AAACC
1 ATAATAATAATTAAATATAAAACC
**
9296436 ATAATAATAATTTTATATAAAACC
1 ATAATAATAATTAAATATAAAACC
*
9296460 ATGATAATAATTAAATATA
1 ATAATAATAATTAAATATA
9296479 TATAATACAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 9 0.26
23 4 0.12
24 21 0.62
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (24 bp):
ATAATAATAATTAAATATAAAACC
Found at i:9298887 original size:41 final size:41
Alignment explanation
Indices: 9298842--9299000 Score: 135
Period size: 41 Copynumber: 3.9 Consensus size: 41
9298832 TGTGCCGATA
*
9298842 ATTTATATCAGGCTTTGTGCCTAGCAAGCTTTC-T-ATCAGTG
1 ATTTATATCAGGCTTTGTGCCTAGCAAGC-TTCGTGCT-AGTG
* * * * * * *
9298883 ATTTATATTAGGCTCTGCGCCCAGTAGGCTTCGTGCTGGTG
1 ATTTATATCAGGCTTTGTGCCTAGCAAGCTTCGTGCTAGTG
* * *
9298924 ATTTATATCAAGCTTTGTGCCTAGC-AGGTGTCGTGCTTGTG
1 ATTTATATCAGGCTTTGTGCCTAGCAAGCT-TCGTGCTAGTG
* ** *
9298965 ATTTATATCAGGCTCTACGCCTAGCAGGCTTCGTGC
1 ATTTATATCAGGCTTTGTGCCTAGCAAGCTTCGTGC
9299001 CGGTGCAATT
Statistics
Matches: 91, Mismatches: 23, Indels: 8
0.75 0.19 0.07
Matches are distributed among these distances:
40 5 0.05
41 83 0.91
42 3 0.03
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (41 bp):
ATTTATATCAGGCTTTGTGCCTAGCAAGCTTCGTGCTAGTG
Found at i:9301139 original size:26 final size:26
Alignment explanation
Indices: 9301110--9301164 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
9301100 TTTAATTCTT
* *
9301110 TTATTTATCT-ATTTACTTTACATTCA
1 TTATTCATCTCATTT-CATTACATTCA
*
9301136 TTATTCATTTCATTTCATTACATTCA
1 TTATTCATCTCATTTCATTACATTCA
9301162 TTA
1 TTA
9301165 CTTGAAAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.16, G:0.00, T:0.56
Consensus pattern (26 bp):
TTATTCATCTCATTTCATTACATTCA
Found at i:9301236 original size:17 final size:17
Alignment explanation
Indices: 9301227--9301332 Score: 131
Period size: 17 Copynumber: 6.1 Consensus size: 17
9301217 CTTCAATGAT
9301227 ATGCAATCTTAGATGTG
1 ATGCAATCTTAGATGTG
*
9301244 ATGCAATCTTAGATATG
1 ATGCAATCTTAGATGTG
* *
9301261 ATACAATCTTAGATATG
1 ATGCAATCTTAGATGTG
*
9301278 ATTGCAATCTTAGATATG
1 A-TGCAATCTTAGATGTG
* *
9301296 ATACAATCTTAGATATG
1 ATGCAATCTTAGATGTG
*
9301313 ATTGCAATCTTAGATATG
1 A-TGCAATCTTAGATGTG
9301331 AT
1 AT
9301333 ATACAATCTT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
17 50 0.61
18 32 0.39
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (17 bp):
ATGCAATCTTAGATGTG
Found at i:9301285 original size:52 final size:54
Alignment explanation
Indices: 9301222--9301345 Score: 198
Period size: 52 Copynumber: 2.3 Consensus size: 54
9301212 ATAATCTTCA
* *
9301222 ATGATATGCAATCTTAGATGTGATGCAATCTTAGATATGA-TACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTACAATCTTAGAT
*
9301275 ATGAT-TGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTACAATCTTAGAT
*
9301328 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
9301346 AGATATGATT
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
52 32 0.49
53 22 0.34
54 11 0.17
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTACAATCTTAGAT
Found at i:9301290 original size:35 final size:35
Alignment explanation
Indices: 9301230--9301345 Score: 198
Period size: 35 Copynumber: 3.3 Consensus size: 35
9301220 CAATGATATG
*
9301230 CAATCTTAGATGTGA-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
9301264 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
9301299 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
9301336 CAATCTTAGA
1 CAATCTTAGA
9301346 AGATATGATT
Statistics
Matches: 78, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
34 14 0.18
35 51 0.65
37 13 0.17
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:9307225 original size:26 final size:27
Alignment explanation
Indices: 9307178--9307235 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
9307168 TATATTTGTA
* *
9307178 AAAATTTATAAATATTTTTAATGAAAT
1 AAAATTTATAAATATATATAATGAAAT
*
9307205 AAAATTT-TAAATATATATAATTAAAT
1 AAAATTTATAAATATATATAATGAAAT
9307231 AAAAT
1 AAAAT
9307236 AATATTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (27 bp):
AAAATTTATAAATATATATAATGAAAT
Found at i:9308642 original size:10 final size:11
Alignment explanation
Indices: 9308616--9308648 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
9308606 CAAATTTTAT
*
9308616 ATTTTTAAAAA
1 ATTTATAAAAA
9308627 ATTTATAAAAA
1 ATTTATAAAAA
9308638 A-TTATAAAAA
1 ATTTATAAAAA
9308648 A
1 A
9308649 CATATAAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
ATTTATAAAAA
Found at i:9321758 original size:33 final size:33
Alignment explanation
Indices: 9321697--9321760 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
9321687 CGTAATCACT
* **
9321697 GTTTCCGACATTACTGAAAATTGAGTTGTTACA
1 GTTTCCGACATCACTGAAAAACGAGTTGTTACA
*
9321730 GTTTCCGACATCACTGAAAAACGGGTTGTTA
1 GTTTCCGACATCACTGAAAAACGAGTTGTTA
9321761 TATACACTGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (33 bp):
GTTTCCGACATCACTGAAAAACGAGTTGTTACA
Done.