Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 313 of 362
Found at i:104540498 original size:13 final size:13
Alignment explanation
Indices: 104540461--104540498 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
104540451 AATTGAAAAG
104540461 TTAATTATATTAA
1 TTAATTATATTAA
*
104540474 TTATTTGA-ATTAA
1 TTAATT-ATATTAA
104540487 TTAATTATATTA
1 TTAATTATATTA
104540499 TAAAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 1 0.05
13 19 0.90
14 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (13 bp):
TTAATTATATTAA
Found at i:104540514 original size:22 final size:21
Alignment explanation
Indices: 104540489--104540531 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
104540479 TGAATTAATT
104540489 AATT-ATATTATAAAAATATAAA
1 AATTCATATT-TAAAAAT-TAAA
104540511 AATTCATATTTAAAAATTAAA
1 AATTCATATTTAAAAATTAAA
104540532 GTATAATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 11 0.55
23 5 0.25
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (21 bp):
AATTCATATTTAAAAATTAAA
Found at i:104545795 original size:15 final size:15
Alignment explanation
Indices: 104545775--104545807 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
104545765 GTTGTAACTT
*
104545775 TAATAATAATGATAA
1 TAATAATAAAGATAA
104545790 TAATAATAAAGATAA
1 TAATAATAAAGATAA
104545805 TAA
1 TAA
104545808 AATGAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (15 bp):
TAATAATAAAGATAA
Found at i:104547042 original size:43 final size:43
Alignment explanation
Indices: 104546978--104547063 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
104546968 TATGTAATTG
* *
104546978 ATATTAAAATGGAAAAGATGAGAAAAGAATGTGAGATGAGAAA
1 ATATTAAAATGGAAAAGATGAGAAAAGAATATGAGAAGAGAAA
* * * *
104547021 ATATTGAAATGGAAAATATGAGAAATGATTATGAGAAGAGAAA
1 ATATTAAAATGGAAAAGATGAGAAAAGAATATGAGAAGAGAAA
104547064 TGAGATATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (43 bp):
ATATTAAAATGGAAAAGATGAGAAAAGAATATGAGAAGAGAAA
Found at i:104547100 original size:7 final size:7
Alignment explanation
Indices: 104547036--104547102 Score: 50
Period size: 7 Copynumber: 9.9 Consensus size: 7
104547026 GAAATGGAAA
104547036 ATATGAG
1 ATATGAG
*
104547043 AAATGA-
1 ATATGAG
*
104547049 TTATGAG
1 ATATGAG
104547056 A-A-GAG
1 ATATGAG
*
104547061 AAATGAG
1 ATATGAG
*
104547068 ATATGAA
1 ATATGAG
104547075 ATTATGAG
1 A-TATGAG
*
104547083 AAATGAG
1 ATATGAG
*
104547090 ATATGAT
1 ATATGAG
104547097 ATATGA
1 ATATGA
104547103 AATGATGAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
5 4 0.09
6 6 0.13
7 30 0.65
8 6 0.13
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (7 bp):
ATATGAG
Found at i:104547100 original size:29 final size:27
Alignment explanation
Indices: 104547048--104547110 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 27
104547038 ATGAGAAATG
104547048 ATTATGAGAAGAGAAATGAGATATGAA
1 ATTATGAGAAGAGAAATGAGATATGAA
* *
104547075 ATTATGAGAAATGAGATATGATATATGAA
1 ATTATGAG-AA-GAGAAATGAGATATGAA
*
104547104 ATGATGA
1 ATTATGA
104547111 ATTGAGATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 8 0.26
28 2 0.06
29 21 0.68
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (27 bp):
ATTATGAGAAGAGAAATGAGATATGAA
Found at i:104548781 original size:16 final size:16
Alignment explanation
Indices: 104548762--104548795 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
104548752 ATAAATTTAA
104548762 TTAAAATAATAATAAT
1 TTAAAATAATAATAAT
**
104548778 TTAAAATTTTAATAAT
1 TTAAAATAATAATAAT
104548794 TT
1 TT
104548796 TTAAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATAATAATAAT
Found at i:104548792 original size:19 final size:19
Alignment explanation
Indices: 104548768--104548806 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
104548758 TTAATTAAAA
104548768 TAATAATAATTTAAA-ATTT
1 TAATAAT-ATTTAAATATTT
*
104548787 TAATAATTTTTAAATATTT
1 TAATAATATTTAAATATTT
104548806 T
1 T
104548807 CTAACAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATAATATTTAAATATTT
Found at i:104549059 original size:3 final size:3
Alignment explanation
Indices: 104549051--104549081 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
104549041 ACAAAATGTG
104549051 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
104549082 CCCTCAAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:104553691 original size:22 final size:22
Alignment explanation
Indices: 104553666--104553710 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
104553656 CCTCTTATCC
104553666 AAATTCTCTCAAATTCTTC-CAA
1 AAATTCTCTCAAATT-TTCTCAA
104553688 AAATTCTCTCAAATTTTCTCAA
1 AAATTCTCTCAAATTTTCTCAA
104553710 A
1 A
104553711 GCTCTCTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (22 bp):
AAATTCTCTCAAATTTTCTCAA
Found at i:104553927 original size:47 final size:48
Alignment explanation
Indices: 104553860--104553957 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 48
104553850 AGTGATAATT
**
104553860 TTAATATTTCAATAGTATTTAATA-TTTTTTAATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
* *
104553907 TTAATTTTTCAATACAATTTAATATTTTTTTTCATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATA-TTTTTTTAATTTATGCAATTTTAA
104553956 TT
1 TT
104553958 TTAATTTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 21 0.47
49 24 0.53
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (48 bp):
TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
Found at i:104555614 original size:13 final size:13
Alignment explanation
Indices: 104555596--104555627 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
104555586 TTTCCAGCAA
104555596 TTATGAATTTATT
1 TTATGAATTTATT
104555609 TTATGAATTTATT
1 TTATGAATTTATT
*
104555622 TGATGA
1 TTATGA
104555628 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:104555835 original size:50 final size:50
Alignment explanation
Indices: 104555722--104555963 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
104555712 ATTTGGGTAA
* * *
104555722 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
104555778 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * **
104555828 AGAGGTCCCATGTAAGACCATGTCTGGGATATGGCGTTGGCACCGAGATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
104555878 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
104555928 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
104555964 TTTGGCATGT
Statistics
Matches: 162, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 87 0.54
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.24
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:104555913 original size:100 final size:104
Alignment explanation
Indices: 104555722--104555971 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
104555712 ATTTGGGTAA
104555722 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC-TAAGATCA-GAGAGGTCCC
* *
104555787 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
64 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * * *
104555828 AGAGGTCCCATGTAAGACCATGTCTGGGATATGGCGTTGGCA-CC-GAGAT-A-AGAGGTCCCCT
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTAAGATCAGAGAGGTCCCCT
104555889 ATAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 ATAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
104555928 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
104555972 GTTATTATCA
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 48 0.37
101 36 0.27
102 1 0.01
103 4 0.03
105 2 0.02
106 39 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (104 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTAAGATCAGAGAGGTCCCCT
ATAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:104562962 original size:29 final size:30
Alignment explanation
Indices: 104562903--104562960 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
104562893 TCCGAGCCTT
*
104562903 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
104562933 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
104562961 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:104563190 original size:13 final size:13
Alignment explanation
Indices: 104563172--104563203 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
104563162 TTTCCAGCAA
104563172 TTATGAATTTATT
1 TTATGAATTTATT
104563185 TTATGAATTTATT
1 TTATGAATTTATT
*
104563198 TGATGA
1 TTATGA
104563204 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:104563411 original size:50 final size:50
Alignment explanation
Indices: 104563298--104563462 Score: 204
Period size: 50 Copynumber: 3.2 Consensus size: 50
104563288 ATTTGGGTAA
* *
104563298 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGA-C--G
* *
104563354 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* * * *
104563404 AGAGGTCCCATGTAAGACCATGTCTGGGATATGGCGTTGACACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
104563454 AGAGGTCCC
1 AGAGGTCCC
104563463 CTATATTGGC
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
50 54 0.55
52 1 0.01
53 3 0.03
55 2 0.02
56 39 0.39
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
Found at i:104566340 original size:56 final size:56
Alignment explanation
Indices: 104566279--104566467 Score: 342
Period size: 56 Copynumber: 3.4 Consensus size: 56
104566269 TTCTTTCATT
* *
104566279 TAATAAAATAAAAGTTTTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAGTATTTTAATTATAATTTACTCTTTTATATTTG
*
104566335 TAATAAAATAAAAGTTATTTTTAGTATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAGTATTTTAATTATAATTTACTCTTTTATATTTG
*
104566391 TAATAAAATAAAAGTTGTTTTTAGTATTTTAATTATAATTTGCTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAGTATTTTAATTATAATTTACTCTTTTATATTTG
104566447 TAATAAAATAAAAGTTGTTTT
1 TAATAAAATAAAAGTTGTTTT
104566468 GATAAGGAAA
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 129 1.00
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (56 bp):
TAATAAAATAAAAGTTGTTTTTAGTATTTTAATTATAATTTACTCTTTTATATTTG
Found at i:104570992 original size:46 final size:46
Alignment explanation
Indices: 104570940--104571213 Score: 424
Period size: 46 Copynumber: 6.0 Consensus size: 46
104570930 AGTGTGCTCT
104570940 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
104570986 CTGATATGAAATGTGTAAGACCATGGTTGGAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
104571032 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
104571078 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
104571124 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
104571170 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
104571214 TCATGTCAAA
Statistics
Matches: 212, Mismatches: 15, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 211 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:104573505 original size:126 final size:126
Alignment explanation
Indices: 104573274--104573650 Score: 477
Period size: 126 Copynumber: 3.0 Consensus size: 126
104573264 AATAGGAACT
* *
104573274 ACTGTAGAAAAAGAGTGTCCACGTGAGAG-TTTTTCTCAGTAATTTTGCTGAAAGTGCATACTGC
1 ACTGTAGAAAAAGAGTGTCCACGTGAGAGCTTTTT-TCAGTAATTTTGCTGACAGTGCATCCTGC
* * ** * *
104573338 ATAAAGCGTTTTTGACACTATTTGTTCAGAAAGGTCATCTCACAATTATTTTTTCAGATACC
65 TTAAAGCGTTTTTGACACTATTTCTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGATACC
** * * *
104573400 ACTGTATCAAAAGAGTGTCCACGTGAGAGCTTTTTTCAGTACTTTTGTTGACAGTGCATCCTACT
1 ACTGTAGAAAAAGAGTGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCT
* * * *
104573465 TAAAGCGTTTTTTACACTATTTTTTTAGAAACTTCTTCTCAAAATTATTTTCTCAGATACC
66 TAAAGCGTTTTTGACACTATTTCTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGATACC
* * * * ** *
104573526 ACTGTAGAAAAAAAGCGTCCACATGGGAGCAATTTTCAGTAATTTTGCTGGCAGTGCATCCTGCT
1 ACTGTAGAAAAAGAGTGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCT
* * * * *
104573591 TGAAGCGTTTTGGATACTATTTCTTCAGAAACTTCTTCTTAAAATTTTTTTTTCAGATAC
66 TAAAGCGTTTTTGACACTATTTCTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGATAC
104573651 TACAGAAGAA
Statistics
Matches: 213, Mismatches: 37, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
126 208 0.98
127 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (126 bp):
ACTGTAGAAAAAGAGTGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCT
TAAAGCGTTTTTGACACTATTTCTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGATACC
Found at i:104574461 original size:20 final size:20
Alignment explanation
Indices: 104574424--104574461 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
104574414 TGATGGGGAG
*
104574424 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
104574444 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
104574462 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:104576407 original size:46 final size:46
Alignment explanation
Indices: 104576355--104576536 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
104576345 AGTGTGCTCT
*
104576355 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
104576401 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
104576447 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
104576493 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
104576537 TCATGTCAAA
Statistics
Matches: 128, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
45 1 0.01
46 127 0.99
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:104577228 original size:12 final size:12
Alignment explanation
Indices: 104577210--104577252 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
104577200 CTAAACTAAA
104577210 ATTTAATTAATT
1 ATTTAATTAATT
*
104577222 TTTTAATTAA-T
1 ATTTAATTAATT
104577233 ATTTAATTTAATT
1 ATTTAA-TTAATT
*
104577246 AATTAAT
1 ATTTAAT
104577253 CTTACACCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 6 0.23
12 14 0.54
13 6 0.23
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTTAATTAATT
Found at i:104577272 original size:26 final size:26
Alignment explanation
Indices: 104577236--104577303 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
104577226 AATTAATATT
104577236 TAATTTAATTAATTAATCTTACACCC
1 TAATTTAATTAATTAATCTTACACCC
104577262 TAATTTAATTAATTAATCTTACACCC
1 TAATTTAATTAATTAATCTTACACCC
*
104577288 CAATTTAATTAATTAA
1 TAATTTAATTAATTAA
104577304 ACCCTTACAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (26 bp):
TAATTTAATTAATTAATCTTACACCC
Found at i:104577325 original size:19 final size:17
Alignment explanation
Indices: 104577301--104577336 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
104577291 TTTAATTAAT
104577301 TAAACCCTTACAAAAACCA
1 TAAA-CCTTA-AAAAACCA
104577320 TAAACCTTAAAAAACCA
1 TAAACCTTAAAAAACCA
104577337 AACCCTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 5 0.29
19 4 0.24
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.17
Consensus pattern (17 bp):
TAAACCTTAAAAAACCA
Found at i:104577345 original size:22 final size:22
Alignment explanation
Indices: 104577314--104577363 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
104577304 ACCCTTACAA
* *
104577314 AAACCATAAACCTTAAAAAACC
1 AAACCCTAAACCATAAAAAACC
*
104577336 AAACCCTAAACCATAAAAACCC
1 AAACCCTAAACCATAAAAAACC
*
104577358 TAACCC
1 AAACCC
104577364 ACCCTAACCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.54, C:0.34, G:0.00, T:0.12
Consensus pattern (22 bp):
AAACCCTAAACCATAAAAAACC
Found at i:104577839 original size:27 final size:27
Alignment explanation
Indices: 104577809--104577862 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
104577799 ACTAAAATAA
104577809 AACCAAAGACATAATTGGGTGAGTATT
1 AACCAAAGACATAATTGGGTGAGTATT
104577836 AACCAAAGACATAATTGGGTGAGTATT
1 AACCAAAGACATAATTGGGTGAGTATT
104577863 CTTATAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (27 bp):
AACCAAAGACATAATTGGGTGAGTATT
Found at i:104591975 original size:38 final size:37
Alignment explanation
Indices: 104591930--104592050 Score: 108
Period size: 38 Copynumber: 3.3 Consensus size: 37
104591920 GAGGTGAAAT
104591930 TATTTAAATACTTTTATTTATATTAATTAT-TTAAAAAA
1 TATTTAAATA-TTTTATTTATATTAATTATATT-AAAAA
* * * * *
104591968 TATTTAAAAATTTAATTATATATCATTTATATTAAAAT
1 TATTTAAATATTTTATT-TATATTAATTATATTAAAAA
* * *
104592006 TATTAAAATATTTTATGT-T-TT-ATTATATT-AAAT
1 TATTTAAATATTTTATTTATATTAATTATATTAAAAA
104592039 TATTTAAATATT
1 TATTTAAATATT
104592051 ACTTACAAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
33 15 0.22
34 7 0.10
35 1 0.01
36 1 0.01
37 7 0.10
38 36 0.52
39 2 0.03
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.54
Consensus pattern (37 bp):
TATTTAAATATTTTATTTATATTAATTATATTAAAAA
Found at i:104597714 original size:113 final size:113
Alignment explanation
Indices: 104597512--104597717 Score: 351
Period size: 113 Copynumber: 1.8 Consensus size: 113
104597502 CTGGATTTTA
*
104597512 ATTTACTCTCTTTAGAGGTGATTCTCCTGCAGTTATTGTTATTTTCTGAAGTGACAATCATCGTT
1 ATTTACTCTCTTTAGAGGTGATTCTCCTGCAGTTATTGTTATTTTCTGAAGTGACAATCATCGCT
*
104597577 CATTGCTGTGTGTAAATTATCCAAATTGAGGTGATTCTTGGCGCAGTT
66 CATTGCTGTGTGTAAATTAACCAAATTGAGGTGATTCTTGGCGCAGTT
* * *
104597625 ATTTACTCTCTTTAGCA-GTGATTCTCCTGCAGTTATTTTTATTTTCTGAAGTGTCAATCATTGC
1 ATTTACTCTCTTTAG-AGGTGATTCTCCTGCAGTTATTGTTATTTTCTGAAGTGACAATCATCGC
104597689 TCATTGCTGTGTGTAAATTAACCAAATTG
65 TCATTGCTGTGTGTAAATTAACCAAATTG
104597718 GGGAGAAGTC
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
113 86 0.99
114 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (113 bp):
ATTTACTCTCTTTAGAGGTGATTCTCCTGCAGTTATTGTTATTTTCTGAAGTGACAATCATCGCT
CATTGCTGTGTGTAAATTAACCAAATTGAGGTGATTCTTGGCGCAGTT
Found at i:104607569 original size:18 final size:18
Alignment explanation
Indices: 104607546--104607603 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
104607536 CCAAGTATGA
104607546 TTATAATTTCTTATATAC
1 TTATAATTTCTTATATAC
*
104607564 TTATAA----TTAAATGA-
1 TTATAATTTCTTATAT-AC
104607578 TTATAATTTCTTATATAC
1 TTATAATTTCTTATATAC
104607596 TTATAATT
1 TTATAATT
104607604 AAAACACTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
14 11 0.34
15 1 0.03
17 1 0.03
18 19 0.59
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (18 bp):
TTATAATTTCTTATATAC
Found at i:104607583 original size:32 final size:32
Alignment explanation
Indices: 104607542--104607606 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
104607532 GGGTCCAAGT
104607542 ATGATTATAATTTCTTATATACTTATAATTAA
1 ATGATTATAATTTCTTATATACTTATAATTAA
104607574 ATGATTATAATTTCTTATATACTTATAATTAA
1 ATGATTATAATTTCTTATATACTTATAATTAA
104607606 A
1 A
104607607 ACACTAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.49
Consensus pattern (32 bp):
ATGATTATAATTTCTTATATACTTATAATTAA
Found at i:104615856 original size:3 final size:3
Alignment explanation
Indices: 104615841--104615919 Score: 88
Period size: 3 Copynumber: 26.0 Consensus size: 3
104615831 AAAAATTTAG
* **
104615841 ATT ATT CATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ACC ATT ATT
1 ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
104615887 ATT ATT ATT ATC ATT -TT CATC ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
104615920 GTTTATGCAT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
2 2 0.03
3 59 0.91
4 4 0.06
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:104615892 original size:27 final size:27
Alignment explanation
Indices: 104615854--104615919 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
104615844 ATTCATTATT
*
104615854 ATTATTATTATTATTATTATTATCACC
1 ATTATTATTATTATTATCATTATCACC
* *
104615881 ATTATTATTATTATTATCATTTTCATC
1 ATTATTATTATTATTATCATTATCACC
104615908 ATTATTATTATT
1 ATTATTATTATT
104615920 GTTTATGCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (27 bp):
ATTATTATTATTATTATCATTATCACC
Found at i:104619620 original size:51 final size:51
Alignment explanation
Indices: 104619542--104619753 Score: 352
Period size: 51 Copynumber: 4.2 Consensus size: 51
104619532 ACTTCTGATC
*
104619542 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* * *
104619593 AGTGATAAGTGATAAGTTGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
*
104619644 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* * *
104619695 AGTGATAAGTGATAAGTGATAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
104619746 AGTGATAA
1 AGTGATAA
104619754 ATGTGATCAG
Statistics
Matches: 149, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 149 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (51 bp):
AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
Found at i:104619704 original size:102 final size:102
Alignment explanation
Indices: 104619542--104619756 Score: 396
Period size: 102 Copynumber: 2.1 Consensus size: 102
104619532 ACTTCTGATC
* *
104619542 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATA
1 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATA
104619607 AGTTG-TAGTTTTAGCTACACTTATCTGATCAGTGACA
66 AG-TGATAGTTTTAGCTACACTTATCTGATCAGTGACA
104619644 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATA
1 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATA
104619709 AGTGATAGTTTTAGCTACACTTATCTGATCAGTGACA
66 AGTGATAGTTTTAGCTACACTTATCTGATCAGTGACA
104619746 AGTGATAAATG
1 AGTGATAAATG
104619757 TGATCAGTGT
Statistics
Matches: 110, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
101 2 0.02
102 108 0.98
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (102 bp):
AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATA
AGTGATAGTTTTAGCTACACTTATCTGATCAGTGACA
Found at i:104623360 original size:51 final size:51
Alignment explanation
Indices: 104623249--104623360 Score: 197
Period size: 51 Copynumber: 2.2 Consensus size: 51
104623239 AACCAAGTTA
*
104623249 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAACAACAAAGTAATAAT
*
104623300 TCCGAATGAAATATGAAGCTCTTGTTGAAGCTAGAACAACAAAGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAACAACAAAGTAATAAT
*
104623351 TCTGGATGAA
1 TCCGGATGAA
104623361 GTATAAAGTA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAACAACAAAGTAATAAT
Found at i:104624253 original size:46 final size:46
Alignment explanation
Indices: 104624201--104624413 Score: 306
Period size: 46 Copynumber: 4.6 Consensus size: 46
104624191 GCTTTCTGAA
*
104624201 ATGAAATGTATAAGACCATGGTTGAAAGATCCCATGGCAACATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
104624247 ATGAAATGTGTAAGACCATGGTTGAAAGATACAATGGCAACATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
104624293 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
104624339 ATGAAATG-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTA-TAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
104624385 A-GAAAATG-AGTAAGACCATAGTTGAAAGA
1 ATG-AAATGTA-TAAGACCATGGTTGAAAGA
104624414 CACTATGACA
Statistics
Matches: 153, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 152 0.99
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:104624318 original size:21 final size:21
Alignment explanation
Indices: 104624248--104624319 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
104624238 CAACATGATA
*
104624248 TGAAATGTGTAAGACCATGGT
1 TGAAATATGTAAGACCATGGT
* ** * *
104624269 TGAAAGATACAATGGCAACATGAT
1 TGAAATATGTAA--G-ACCATGGT
104624293 ATGAAATATGTAAGACCATGGT
1 -TGAAATATGTAAGACCATGGT
104624315 TGAAA
1 TGAAA
104624320 GATACCATGG
Statistics
Matches: 36, Mismatches: 11, Indels: 8
0.65 0.20 0.15
Matches are distributed among these distances:
21 13 0.36
22 6 0.17
23 2 0.06
24 6 0.17
25 9 0.25
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.25
Consensus pattern (21 bp):
TGAAATATGTAAGACCATGGT
Found at i:104627100 original size:17 final size:18
Alignment explanation
Indices: 104627073--104627106 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
104627063 TAGTATAGGT
104627073 TTTCATTTTTCTCTTCTC
1 TTTCATTTTTCTCTTCTC
*
104627091 TTTC-TTTTTCTTTTCT
1 TTTCATTTTTCTCTTCT
104627107 TTTTGGTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTCATTTTTCTCTTCTC
Found at i:104633578 original size:23 final size:23
Alignment explanation
Indices: 104633548--104633591 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
104633538 TATAAGTAGA
104633548 TTATTTTATATTTAAATAATATC
1 TTATTTTATATTTAAATAATATC
104633571 TTATTTTATATTTAAATAATA
1 TTATTTTATATTTAAATAATA
104633592 AATAACAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (23 bp):
TTATTTTATATTTAAATAATATC
Found at i:104637711 original size:33 final size:33
Alignment explanation
Indices: 104637669--104637734 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
104637659 ATGGACACAT
104637669 AAATCTATTTACAC-AGCTTAAAAACTTTTAATG
1 AAATCTATTTACACAAG-TTAAAAACTTTTAATG
104637702 AAATCTATTTACACAAGTTAAAAACTTTTAATG
1 AAATCTATTTACACAAGTTAAAAACTTTTAATG
104637735 TCTTATCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 30 0.94
34 2 0.06
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (33 bp):
AAATCTATTTACACAAGTTAAAAACTTTTAATG
Found at i:104642328 original size:30 final size:31
Alignment explanation
Indices: 104642270--104642328 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
104642260 ATCTTAAGTA
*
104642270 AAAATAAATAAAAATAATAAAATAAAGGGTT
1 AAAATAAATAAAAATAATAAAAGAAAGGGTT
*
104642301 AAAATAAA-AAAAATAATAAAAGGAAGGG
1 AAAATAAATAAAAATAATAAAAGAAAGGG
104642329 ATCAAAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (31 bp):
AAAATAAATAAAAATAATAAAAGAAAGGGTT
Found at i:104646681 original size:39 final size:39
Alignment explanation
Indices: 104646627--104646707 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
104646617 AAATATGGTT
* *
104646627 TTAATTATTAATAAAACAAAGT-GACCTGGGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAG-CATGGGGGAGTGGGA
104646666 TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
104646705 TTA
1 TTA
104646708 GCTTTTTTGC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 38 0.97
40 1 0.03
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.26
Consensus pattern (39 bp):
TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
Found at i:104659796 original size:44 final size:44
Alignment explanation
Indices: 104659742--104660484 Score: 1106
Period size: 44 Copynumber: 17.1 Consensus size: 44
104659732 AATCCAAGAT
*
104659742 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
104659786 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
104659830 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGCTAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
104659874 GATTTGGCATCTTTGTAGCGGCGGAGAGCAGATCGAAAATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
104659918 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
104659962 GATTTGGCGTATCTGTAGTGGCGGAAAGTAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
104660002 GATTTGGCATCTCTGTAGTGGCGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
104660046 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
104660090 GATTTGGCGTCTCTGTAGCGGCGGAGAACAAATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
104660134 GATTTGGCGTTTCTGTAGCGGCGGAGAGTAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
104660174 GATTTGGCATCTCTATAGTGGTGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
104660218 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
104660262 GATTTGGCGTCTCTGTAGCGGCGGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
104660306 AATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
104660350 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
104660394 GATTTGACGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** * * *
104660438 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAAATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
104660482 GAT
1 GAT
104660485 CGGTGTTCCT
Statistics
Matches: 632, Mismatches: 59, Indels: 16
0.89 0.08 0.02
Matches are distributed among these distances:
40 70 0.11
44 562 0.89
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:104660043 original size:216 final size:217
Alignment explanation
Indices: 104659742--104660484 Score: 1055
Period size: 216 Copynumber: 3.4 Consensus size: 217
104659732 AATCCAAGAT
* *
104659742 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCATCTCTGTAGCGG
* * * * *
104659807 CGGAGAGCAGATCAAAGATAATAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGCTAA
63 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
* * * *
104659872 CAGATTTGGCATCTTTGTAGCGGCGGAGAGCAGATCGAAAATAACAGATTTGGCGTCTCTGTAGC
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGC
104659937 GGCGGAGAGCAGATCGAAGATAACA
193 GGCGGAGAGCAGATCGAAGATAACA
* * * * *
104659962 GATTTGGCGTATCTGTAGTGGCGGAAAGTAGATCGAAGAT-GATTTGGCATCTCTGTAGTGGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATTTGGCATCTCTGTAGCGGCGG
*
104660026 AGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAG
66 AGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAG
* * *
104660091 ATTTGGCGTCTCTGTAGCGGCGGAGAACAAATCGAAGATAGCAGATTTGGCGTTTCTGTAGCGGC
131 ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGCGGC
*
104660156 GGAGAGTAGATCGAAGAT----
196 GGAGAGCAGATCGAAGATAACA
* * * * *
104660174 GATTTGGCATCTCTATAGTGGTGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCATCTCTGTAGCGG
*
104660239 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGTAGATCGAAGATAA
63 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
*
104660304 CAAATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGC
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGC
104660369 GGCGGAGAGCAGATCGAAGATAACA
193 GGCGGAGAGCAGATCGAAGATAACA
* * **
104660394 GATTTGACGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCATCTCTGTAGCGG
* * *
104660459 CAGAGAGTAGATCGAAAATAACAGAT
63 CGGAGAGCAGATCGAAGATAACAGAT
104660485 CGGTGTTCCT
Statistics
Matches: 469, Mismatches: 46, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
212 34 0.07
216 321 0.68
220 114 0.24
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (217 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATTTGGCATCTCTGTAGCGGCGG
AGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAG
ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGCGGC
GGAGAGCAGATCGAAGATAACA
Found at i:104661371 original size:11 final size:12
Alignment explanation
Indices: 104661355--104661383 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
104661345 TTTTCTTTTG
104661355 AAAAAA-AGAAA
1 AAAAAATAGAAA
104661366 AAAAAATAGAAA
1 AAAAAATAGAAA
104661378 AAAAAA
1 AAAAAA
104661384 GCTTCAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (12 bp):
AAAAAATAGAAA
Found at i:104661931 original size:39 final size:39
Alignment explanation
Indices: 104661878--104661958 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
104661868 AAATATGGTT
104661878 TTAATTAATAATAAAACAAAGT-GACATGGGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAG-CATGGGGGAGTGGGA
104661917 TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
104661956 TTA
1 TTA
104661959 GCTTTTTTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
39 40 0.98
40 1 0.02
ACGTcount: A:0.43, C:0.05, G:0.27, T:0.25
Consensus pattern (39 bp):
TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
Found at i:104662413 original size:31 final size:30
Alignment explanation
Indices: 104662365--104662425 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
104662355 GCATATCTGT
*
104662365 TTATATGAAATACTTTATATTATTATTACTA
1 TTATATGAAATACTTTATA-TAATATTACTA
*
104662396 TTATATGTATATA-TTTATATAATATTACTA
1 TTATATG-AAATACTTTATATAATATTACTA
104662426 ATAGTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 10 0.37
31 13 0.48
32 4 0.15
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.52
Consensus pattern (30 bp):
TTATATGAAATACTTTATATAATATTACTA
Found at i:104667519 original size:53 final size:51
Alignment explanation
Indices: 104667456--104667572 Score: 130
Period size: 51 Copynumber: 2.3 Consensus size: 51
104667446 CCATAGAGGT
104667456 AATAGTAACAGTAACA-ATAGTGTACACAGAGTACCTCAT-CAGAACAAATCCAG
1 AATAGTAACAGTAACAGATAG-GT--ACAGAGTACCTC-TGCAGAACAAATCCAG
* * ** *
104667509 AATAGTAACAGAAACAGTTAGGTACAGAGTACCTCTGGGGAACAAATTCAG
1 AATAGTAACAGTAACAGATAGGTACAGAGTACCTCTGCAGAACAAATCCAG
*
104667560 AACAGTAACAGTA
1 AATAGTAACAGTA
104667573 GTCGACACTT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
50 1 0.02
51 34 0.62
53 17 0.31
54 3 0.05
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (51 bp):
AATAGTAACAGTAACAGATAGGTACAGAGTACCTCTGCAGAACAAATCCAG
Found at i:104668448 original size:13 final size:13
Alignment explanation
Indices: 104668440--104668474 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 13
104668430 ATTAATGTAT
104668440 TATAATAATATAA
1 TATAATAATATAA
104668453 TATAATATAATATAA
1 TAT-A-ATAATATAA
104668468 TATAATA
1 TATAATA
104668475 TAATATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.30
14 2 0.10
15 12 0.60
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TATAATAATATAA
Found at i:104668454 original size:5 final size:5
Alignment explanation
Indices: 104668444--104668498 Score: 83
Period size: 5 Copynumber: 10.8 Consensus size: 5
104668434 ATGTATTATA
* *
104668444 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT TTACTT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT
104668495 ATAA
1 ATAA
104668499 GCAACACTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
5 42 0.93
6 3 0.07
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:104668687 original size:20 final size:21
Alignment explanation
Indices: 104668662--104668711 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
104668652 GTCTTTTCTC
*
104668662 CTAATTAATCTTAATTAAA-A
1 CTAATTAATCTAAATTAAACA
* *
104668682 CTAATTCA-CTAAATTAAACT
1 CTAATTAATCTAAATTAAACA
104668702 CTAATTAATC
1 CTAATTAATC
104668712 ACTCAACTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 9 0.38
20 14 0.58
21 1 0.04
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (21 bp):
CTAATTAATCTAAATTAAACA
Found at i:104675955 original size:5 final size:5
Alignment explanation
Indices: 104675945--104675989 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
104675935 ATGTATTATA
* * *
104675945 ATAAT ATAAT ATAGT ATAAT ATAAT ATAAT TTACTT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT ATAA
104675990 GCAAATACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
5 30 0.91
6 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:104683573 original size:5 final size:5
Alignment explanation
Indices: 104683563--104683607 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
104683553 ATGTATTATA
* * *
104683563 ATAAT ATAAT ATAGT ATAAT ATAAT ATAAT TTACTT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT ATAA
104683608 GCAAATACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
5 30 0.91
6 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:104689369 original size:46 final size:46
Alignment explanation
Indices: 104689315--104689410 Score: 167
Period size: 46 Copynumber: 2.1 Consensus size: 46
104689305 ACAAGTCAGT
104689315 ACATTTTATAC-AATGCAATAATACAAAACAAGAAATAATAAATAGA
1 ACATTTTATACAAAT-CAATAATACAAAACAAGAAATAATAAATAGA
*
104689361 ACATTTTATACAAATCAATAATACAAAGCAAGAAATAATAAATAGA
1 ACATTTTATACAAATCAATAATACAAAACAAGAAATAATAAATAGA
104689407 ACAT
1 ACAT
104689411 CTATTTGGGT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 45 0.94
47 3 0.06
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.24
Consensus pattern (46 bp):
ACATTTTATACAAATCAATAATACAAAACAAGAAATAATAAATAGA
Found at i:104692627 original size:21 final size:21
Alignment explanation
Indices: 104692601--104692643 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
104692591 TTTGGGTGGA
104692601 TCAGCTCTCACGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
* *
104692622 TCAGCTCTTATGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
104692643 T
1 T
104692644 GATGTGTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.28, G:0.19, T:0.40
Consensus pattern (21 bp):
TCAGCTCTCACGAGCTTCTGT
Found at i:104693340 original size:41 final size:39
Alignment explanation
Indices: 104693246--104693352 Score: 128
Period size: 41 Copynumber: 2.7 Consensus size: 39
104693236 CGACTTCAAG
* *
104693246 TCGATGAGGCATTGAGTGTCAATTTAC--TTCGGTATAA
1 TCGATGAGACATTGGGTGTCAATTTACTATTCGGTATAA
* * *
104693283 TCGATCAGACATTGGGTGTCAATTTACTATTTCGGATTTAT
1 TCGATGAGACATTGGGTGTCAATTTACTA-TTCGG-TATAA
*
104693324 TCGATGAGACACTGGGTGTCAATTTACTA
1 TCGATGAGACATTGGGTGTCAATTTACTA
104693353 CTTTGAATTA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
37 24 0.41
40 5 0.08
41 30 0.51
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.36
Consensus pattern (39 bp):
TCGATGAGACATTGGGTGTCAATTTACTATTCGGTATAA
Found at i:104697988 original size:78 final size:77
Alignment explanation
Indices: 104697885--104698179 Score: 468
Period size: 78 Copynumber: 3.8 Consensus size: 77
104697875 ATTTGATGTG
* *
104697885 TATCCGGGCTTAAAGACTCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGACCCGCAGGC
1 TATCCGGGCTTAAA-ACCCGCAGGCTTCGTGCTGGTAATATATCCGGG-TTAAA-TCCCGCAGGC
104697950 TTCGTGCTGGTAATA
63 TTCGTGCTGGTAATA
*
104697965 TATCCGGG-TTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTC
1 TATCCGGGCTTAAAACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTC
104698029 GTGCTGGTAATA
66 GTGCTGGTAATA
* * *
104698041 TATCCGGGCTTAAAAACCCGCAGGCTTTGTGCTGGTATTATATCCGGGTTAAATTCCGCAGGCTT
1 TATCCGGGCTT-AAAACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
104698106 CGTGCTGGTAATA
65 CGTGCTGGTAATA
* *
104698119 TATCCGGG-TTAAATCCCGCAGGCTTCGTGCTAGTAATATATCCGGGTTAAATCCCGCAGGC
1 TATCCGGGCTTAAAACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGC
104698180 CTAGTACTGT
Statistics
Matches: 201, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
76 78 0.39
77 9 0.04
78 101 0.50
79 5 0.02
80 8 0.04
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (77 bp):
TATCCGGGCTTAAAACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTC
GTGCTGGTAATA
Found at i:104698107 original size:116 final size:116
Alignment explanation
Indices: 104697885--104698197 Score: 486
Period size: 116 Copynumber: 2.7 Consensus size: 116
104697875 ATTTGATGTG
* * *
104697885 TATCCGGGCTTAAAGACTCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGACCCGCAGGC
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAAACCCGCAGGC
* *
104697950 TTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
64 TTAGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
104698003 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAAACCCGCAGGCTT
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAAACCCGCAGGCTT
* *
104698068 TGTGCTGGTATTATATCCGGGTTAAATTCCGCAGGCTTCGTGCTGGTAATA
66 AGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
104698119 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATCCGGG-TT-AAATCCCGCAGGCCT
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAAACCCGCAGGCTT
* *
104698182 AGTACTGTTATTATAT
66 AGTGCTGGTATTATAT
104698198 TCAGGCCTTT
Statistics
Matches: 183, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
114 26 0.14
115 2 0.01
116 142 0.78
117 5 0.03
118 8 0.04
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (116 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAAACCCGCAGGCTT
AGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:104698197 original size:38 final size:38
Alignment explanation
Indices: 104697885--104698179 Score: 464
Period size: 38 Copynumber: 7.6 Consensus size: 38
104697875 ATTTGATGTG
* *
104697885 TATCCGGGCTTAAAGACTCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
*
104697925 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
104697965 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
104698003 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
104698041 TATCCGGGCTTAAAAACCCGCAGGCTTTGTGCTGGTATTA
1 TATCCGGG-TT-AAATCCCGCAGGCTTCGTGCTGGTAATA
*
104698081 TATCCGGGTTAAATTCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
104698119 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
104698157 TATCCGGGTTAAATCCCGCAGGC
1 TATCCGGGTTAAATCCCGCAGGC
104698180 CTAGTACTGT
Statistics
Matches: 242, Mismatches: 11, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
38 153 0.63
39 9 0.04
40 80 0.33
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:104705366 original size:66 final size:66
Alignment explanation
Indices: 104705260--104705392 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
104705250 CCTCGTTAAG
104705260 AGGACCAGGGGGATGAAGTGCTTTGCGCACCATTGTGGATGTCCTTCGGAGGGTTGTCGATGTTG
1 AGGACCAGGGGGATGAAGTGCTTTGCGCACCATTGTGGATGTCCTTCGGAGGGTTGTCGATGTTG
104705325 C
66 C
*
104705326 AGGACCAGGGGGATGAAGTGCTTTGCGCACCATTGTGGATGTCCTTCGGAGGGTTTTCGATGTTG
1 AGGACCAGGGGGATGAAGTGCTTTGCGCACCATTGTGGATGTCCTTCGGAGGGTTGTCGATGTTG
104705391 C
66 C
104705392 A
1 A
104705393 CCCTAAGTTG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.17, C:0.18, G:0.37, T:0.28
Consensus pattern (66 bp):
AGGACCAGGGGGATGAAGTGCTTTGCGCACCATTGTGGATGTCCTTCGGAGGGTTGTCGATGTTG
C
Found at i:104707724 original size:30 final size:30
Alignment explanation
Indices: 104707678--104707801 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
104707668 TTTTATTATG
*
104707678 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
*
104707709 CCAATATTTGATACCCATATATTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
104707739 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
104707769 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
104707799 CCA
1 CCA
104707802 TAAATATGGA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 79 0.92
31 7 0.08
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:104707730 original size:15 final size:15
Alignment explanation
Indices: 104707688--104707795 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
104707678 CCAATATCTC
*
104707688 GATACCCATATCTTT
1 GATACCCATATATTT
**
104707703 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
104707718 GATACCCATATATTT
1 GATACCCATATATTT
**
104707733 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
104707748 GATACCCATATCTTT
1 GATACCCATATATTT
** *
104707763 GACTTTCTAT-TATTT
1 GA-TACCCATATATTT
*
104707778 GATACCCATATCTTT
1 GATACCCATATATTT
104707793 GAT
1 GAT
104707796 TTTCCATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 12 0.17
15 45 0.65
16 12 0.17
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:104712414 original size:30 final size:30
Alignment explanation
Indices: 104712364--104712487 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
104712354 TTTTATTATG
* *
104712364 CCAATATCTCGATACTCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
104712395 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
104712425 CCAATATTTGATACCCATATCTTTAACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
104712455 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
104712485 CCA
1 CCA
104712488 TAAATATGGA
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 78 0.92
31 7 0.08
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:104712419 original size:15 final size:15
Alignment explanation
Indices: 104712374--104712481 Score: 60
Period size: 15 Copynumber: 7.2 Consensus size: 15
104712364 CCAATATCTC
*
104712374 GATACTCATATCTTT
1 GATACCCATATCTTT
** *
104712389 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
104712404 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
104712419 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
104712434 GATACCCATATCTTT
1 GATACCCATATCTTT
* ** * *
104712449 AACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
104712464 GATACCCATATCTTT
1 GATACCCATATCTTT
104712479 GAT
1 GAT
104712482 TTTCCATAAA
Statistics
Matches: 64, Mismatches: 23, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
14 12 0.19
15 41 0.64
16 11 0.17
ACGTcount: A:0.27, C:0.21, G:0.06, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:104713815 original size:18 final size:18
Alignment explanation
Indices: 104713794--104713833 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
104713784 TTAAAATGCA
104713794 TGCAGGCTATT-TGCATGT
1 TGCA-GCTATTGTGCATGT
*
104713812 TGCAGCTCTTGTGCATGT
1 TGCAGCTATTGTGCATGT
104713830 TGCA
1 TGCA
104713834 CTAACAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.15, C:0.20, G:0.28, T:0.38
Consensus pattern (18 bp):
TGCAGCTATTGTGCATGT
Found at i:104716622 original size:20 final size:20
Alignment explanation
Indices: 104716597--104716634 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
104716587 AATTTTAATA
104716597 TTTTTATATATTTTATAAAT
1 TTTTTATATATTTTATAAAT
* *
104716617 TTTTTATTTTTTTTATAA
1 TTTTTATATATTTTATAA
104716635 TTTAAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTTATATATTTTATAAAT
Found at i:104716628 original size:27 final size:28
Alignment explanation
Indices: 104716568--104716645 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
104716558 TTTCTATATA
104716568 ATTTTTATA-ATGTTTACAAAATTTTAAT
1 ATTTTTATATAT-TTTACAAAATTTTAAT
* * *
104716596 ATTTTTATATATTTTATAAATTTTTTAT
1 ATTTTTATATATTTTACAAAATTTTAAT
* * *
104716624 -TTTTTTTATAATTTAAAAAATT
1 ATTTTTATATATTTTACAAAATT
104716646 ACATCTAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 18 0.43
28 22 0.52
29 2 0.05
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (28 bp):
ATTTTTATATATTTTACAAAATTTTAAT
Found at i:104717167 original size:14 final size:15
Alignment explanation
Indices: 104717148--104717188 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
104717138 TAAGACCAAC
104717148 AAAAATTAAATTT-T
1 AAAAATTAAATTTAT
*
104717162 AAAAATTAGATTTGAT
1 AAAAATTAAATTT-AT
104717178 AAAAA-TAAATT
1 AAAAATTAAATT
104717189 ACGGTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 12 0.52
15 5 0.22
16 6 0.26
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (15 bp):
AAAAATTAAATTTAT
Found at i:104721462 original size:106 final size:106
Alignment explanation
Indices: 104721264--104721476 Score: 313
Period size: 106 Copynumber: 2.0 Consensus size: 106
104721254 AAATATCGCT
* *
104721264 AATTAAATCAAATTTTATGAAAAATGCCTTTGTATTTCGAGTTAATCGGGAAGAAAATCATGCAT
1 AATTAAATCAAATTTTATGAAAAATGCCTTTATATTTCGAGTTAATCGGGAAGAAAATCATGCAC
** **
104721329 CGTAAGTTAGGGCATGATGTTTCAAATCTTTGAAAATAAGA
66 CGTAAGTTAGGGCACAATGTTTCAAATCCCTGAAAATAAGA
* * *
104721370 AATTAAATCAAATTTTATGAAGAATGTCTTTATATTTCGAGTTAATTGGGAA-AAGAATCATGCA
1 AATTAAATCAAATTTTATGAAAAATGCCTTTATATTTCGAGTTAATCGGGAAGAA-AATCATGCA
104721434 CCGTAAGTTAGGGCACAATGTCTT-AAATCCCTGAAAATAAGA
65 CCGTAAGTTAGGGCACAATGT-TTCAAATCCCTGAAAATAAGA
104721476 A
1 A
104721477 TGCTCATTTT
Statistics
Matches: 96, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
105 2 0.02
106 92 0.96
107 2 0.02
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.32
Consensus pattern (106 bp):
AATTAAATCAAATTTTATGAAAAATGCCTTTATATTTCGAGTTAATCGGGAAGAAAATCATGCAC
CGTAAGTTAGGGCACAATGTTTCAAATCCCTGAAAATAAGA
Found at i:104724691 original size:20 final size:20
Alignment explanation
Indices: 104724666--104724705 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
104724656 AAAGTGAGCT
104724666 GAAGGATAGTGTGATTTTAC
1 GAAGGATAGTGTGATTTTAC
104724686 GAAGGATAGTGTGATTTTAC
1 GAAGGATAGTGTGATTTTAC
104724706 TCCGACCGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (20 bp):
GAAGGATAGTGTGATTTTAC
Found at i:104725374 original size:26 final size:26
Alignment explanation
Indices: 104725335--104725404 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
104725325 ACAATATCGA
*
104725335 GAAGCTC-CAAAGAGCCATTAATTAG
1 GAAGCTCACAAAGAGCCATTAATCAG
* *
104725360 GAAGCTCACAAAGAGCCTTTAGTCAG
1 GAAGCTCACAAAGAGCCATTAATCAG
104725386 GAAGCTCACAAAGAGCCAT
1 GAAGCTCACAAAGAGCCAT
104725405 GTAACGGGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 7 0.17
26 33 0.82
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
GAAGCTCACAAAGAGCCATTAATCAG
Found at i:104725418 original size:26 final size:25
Alignment explanation
Indices: 104725335--104725419 Score: 91
Period size: 26 Copynumber: 3.3 Consensus size: 25
104725325 ACAATATCGA
*
104725335 GAAGCTC-CAAAGAGCCATTAATTAG
1 GAAGCTCACAAAGAGCCATTAA-CAG
* *
104725360 GAAGCTCACAAAGAGCCTTTAGTCAG
1 GAAGCTCACAAAGAGCCATTA-ACAG
*
104725386 GAAGCTCACAAAGAGCCATGTAACGG
1 GAAGCTCACAAAGAGCCAT-TAACAG
*
104725412 GATGCTCA
1 GAAGCTCA
104725420 TAAGAGCTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
25 7 0.14
26 41 0.82
27 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (25 bp):
GAAGCTCACAAAGAGCCATTAACAG
Found at i:104740296 original size:54 final size:55
Alignment explanation
Indices: 104740217--104740337 Score: 165
Period size: 55 Copynumber: 2.2 Consensus size: 55
104740207 AAAAAAATGT
*
104740217 TTTGGGGGTTTGAGAGGAAATAAAAGTTTTAGG-GGAAAACAAAAGGAAAAAAAA
1 TTTGGGGGTTTGAGAGGAAATAAAAGTTTTAGGAGGAAAACAAAAGAAAAAAAAA
* * *
104740271 TTTGAGGGGTTTGA-AGGAAGTAAAAGTTTTGGGAGGGAAACAAAAGAAAAAAAAA
1 TTTG-GGGGTTTGAGAGGAAATAAAAGTTTTAGGAGGAAAACAAAAGAAAAAAAAA
* *
104740326 TGTGGAGGTTTG
1 TTTGGGGGTTTG
104740338 GGGAATGATA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
54 28 0.47
55 31 0.53
ACGTcount: A:0.44, C:0.02, G:0.32, T:0.22
Consensus pattern (55 bp):
TTTGGGGGTTTGAGAGGAAATAAAAGTTTTAGGAGGAAAACAAAAGAAAAAAAAA
Found at i:104742933 original size:21 final size:21
Alignment explanation
Indices: 104742909--104742954 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
104742899 CCTAAATCAA
104742909 AAACCCCAAACCCTAAACCTC
1 AAACCCCAAACCCTAAACCTC
**
104742930 AAACTTCAAACCCTAAACCTC
1 AAACCCCAAACCCTAAACCTC
104742951 AAAC
1 AAAC
104742955 TTTAAACCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.46, C:0.41, G:0.00, T:0.13
Consensus pattern (21 bp):
AAACCCCAAACCCTAAACCTC
Found at i:104742955 original size:21 final size:21
Alignment explanation
Indices: 104742915--104742966 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
104742905 TCAAAAACCC
104742915 CAAACCCTAAACCTCAAACTT
1 CAAACCCTAAACCTCAAACTT
104742936 CAAACCCTAAACCTCAAACTT
1 CAAACCCTAAACCTCAAACTT
*
104742957 TAAACCCTAA
1 CAAACCCTAA
104742967 CCATGACCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (21 bp):
CAAACCCTAAACCTCAAACTT
Found at i:104752071 original size:15 final size:15
Alignment explanation
Indices: 104752051--104752080 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
104752041 CATTTTATTT
*
104752051 ATATTAGGATAATTA
1 ATATTAAGATAATTA
104752066 ATATTAAGATAATTA
1 ATATTAAGATAATTA
104752081 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:104758481 original size:13 final size:14
Alignment explanation
Indices: 104758456--104758484 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
104758446 AAACCCAATC
104758456 TTTAATCTTTAATT
1 TTTAATCTTTAATT
104758470 TTTAAT-TTTAATT
1 TTTAATCTTTAATT
104758483 TT
1 TT
104758485 ATTTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTAATCTTTAATT
Found at i:104758530 original size:20 final size:21
Alignment explanation
Indices: 104758486--104758546 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
104758476 TTTAATTTTA
104758486 TTTA-TTTATTATTATTATTT
1 TTTATTTTATTATTATTATTT
*
104758506 CTTATTTTATT-TTATT-TTGT
1 TTTATTTTATTATTATTATT-T
104758526 TTTATTTTTAATTATT-TTATT
1 TTTA-TTTT-ATTATTATTATT
104758547 ATAATAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
19 2 0.06
20 12 0.36
21 10 0.30
22 5 0.15
23 4 0.12
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (21 bp):
TTTATTTTATTATTATTATTT
Found at i:104758531 original size:30 final size:30
Alignment explanation
Indices: 104758480--104758546 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
104758470 TTTAATTTTA
*
104758480 ATTTTA-TTTATTTATTATTATTATTT-CTT
1 ATTTTATTTTATTTATTATTATT-TTTAATT
*
104758509 ATTTTATTTTATTT-TGTTTTATTTTTAATT
1 ATTTTATTTTATTTAT-TATTATTTTTAATT
104758539 ATTTTATT
1 ATTTTATT
104758547 ATAATAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 10 0.30
30 23 0.70
ACGTcount: A:0.22, C:0.01, G:0.01, T:0.75
Consensus pattern (30 bp):
ATTTTATTTTATTTATTATTATTTTTAATT
Found at i:104761371 original size:96 final size:95
Alignment explanation
Indices: 104761190--104761373 Score: 289
Period size: 96 Copynumber: 1.9 Consensus size: 95
104761180 ATTTCTAAGA
*
104761190 ATGTGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTC
1 ATGTGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTATCATCTCTCTTCACGTCAAAAGGTTC
*
104761255 AATATGTTCTTAGGAAAAATAAAAATTAGGG
66 AATATGTTCCTA-GAAAAATAAAAATTAGGG
* *
104761286 ATGTGTTGGGCTGAGTAACCGGGGTGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAAGGTTC
1 ATGTGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTATCATCTCTCTTCACGTCAAAAGGTTC
*
104761351 AATATTTATCCT-GAATAAATAAA
66 AATATGT-TCCTAGAA-AAATAAA
104761374 TAAAGTTGAA
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 3 0.04
96 75 0.93
97 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (95 bp):
ATGTGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTATCATCTCTCTTCACGTCAAAAGGTTC
AATATGTTCCTAGAAAAATAAAAATTAGGG
Found at i:104762008 original size:15 final size:15
Alignment explanation
Indices: 104761988--104762017 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
104761978 CATTTTATTT
*
104761988 ATATTAGGATAATTA
1 ATATTAAGATAATTA
104762003 ATATTAAGATAATTA
1 ATATTAAGATAATTA
104762018 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:104762045 original size:27 final size:26
Alignment explanation
Indices: 104761984--104762046 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
104761974 ACTCCATTTT
104761984 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
104762011 ATAATTATTAGGATTATTAAATTTTAGG
1 AT-TTTATTAGGATAATT-AATATTAAG
104762039 ATTTTATT
1 ATTTTATT
104762047 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:104764550 original size:23 final size:22
Alignment explanation
Indices: 104764492--104764551 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 22
104764482 TCAATTAAAA
104764492 TATATTAAATT-ATTTTATAAT
1 TATATTAAATTAATTTTATAAT
*
104764513 TTTATATAAATTTAATTTTATAAT
1 TATAT-TAAA-TTAATTTTATAAT
*
104764537 TGATATTATATTAAT
1 T-ATATTAAATTAAT
104764552 CAGTTTAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 4 0.12
22 4 0.12
23 7 0.22
24 14 0.44
25 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TATATTAAATTAATTTTATAAT
Found at i:104772880 original size:481 final size:480
Alignment explanation
Indices: 104771979--104772936 Score: 1772
Period size: 481 Copynumber: 2.0 Consensus size: 480
104771969 ATTTAGGGTG
* *
104771979 TAAATGTGGTTGTTGATGAACTTTATTACACAACTGTTGCATTTTAAGATCACTAACACAAGAAT
1 TAAATGTGATTGTTGATGAACTTTATTACACAACTATTGCATTTTAAGATCACTAACACAAGAAT
* * **
104772044 CCAATACCTTTGTCTAAAGGTGGGACCAGTTAGACTTGCTAAGACATTGAAGGAGCTGATCATCT
66 CCAATACCCTTGTCTAAAGGTGGGACCAGTTAGACTTGCTAAGACACTGAAAAAGCTGATCATCT
104772109 TCCTCTTGTGGCCTCTTGGATACAGCATTTGCAACCAGATTATGAGTACATTTTCTGTAAGTCTA
131 TCCTCTTGTGGCCTCTTGGATACAGCATTTGCAACCAGATTATGAGTACATTTTCTGTAAGTCTA
104772174 ACACAGTCATACCCGAGCATTTTTTAAACCTATTTCTACTGATAGGGAGTAATAGCTTGCTTGTC
196 ACACAGTCATACCCGAGCATTTTTTAAACCTATTTCTACTGATAGGGAGTAATAGCTTGCTTGTC
*
104772239 AGATAAGAGCCTCAAACTTTGATGGTCGATTCTAATCTAAAACCATCTACCAACCAAGTAGGAGT
261 AGATAAGAGCCTCAAACTTTGATGGTCGATTCTAATCTAAAACCATCTACCAACCAAGTAAGAGT
104772304 GCCATTTTTTTAATGCTAACAAGACAACGAGCATCTCCTTATCATAAATAAAATATGTCTGATGT
326 GCCATTTTTTTAATGCTAACAAGACAACGAGCATCTCCTTATCATAAATAAAATATGTCTGATGT
*
104772369 TTTATTCCTAAGGCATTGCTAAAGAAGGCAATTGGCTTCCCATGTTGTTGTAGCATAACTCCAAT
391 TTTATTCCTAAGGCATTGATAAAGAAGGCAATTGGCTTCCCATGTTGTTGTAGCATAACTCCAAT
* *
104772434 GCCATAACCACTGGCATCAGTGCCA
456 ACCATAACCACTAGCATCAGTGCCA
104772459 TAAATGTGATTGTTGATGAACTTTATTACACAACTATTGCATTTTAAGATCACTAACACAAGAAT
1 TAAATGTGATTGTTGATGAACTTTATTACACAACTATTGCATTTTAAGATCACTAACACAAGAAT
104772524 CCAATACCCTTGTCTAAAGGTGGGACCAGTTAGACTTGCTAAGACACTGAAAAAGCTGATCATCT
66 CCAATACCCTTGTCTAAAGGTGGGACCAGTTAGACTTGCTAAGACACTGAAAAAGCTGATCATCT
*
104772589 TCCTCTTGTGGCCTCTTGGATACAGCATTTGCAACCAGATTATGAGTACATTTTTCTTTAAGTCT
131 TCCTCTTGTGGCCTCTTGGATACAGCATTTGCAACCAGATTATGAGTACA-TTTTCTGTAAGTCT
*
104772654 AACACAGTCATAGCCGAGCATTTTTTAAACCTATTTCTACTGATAGGGAGTAATAGCTTGCTTGT
195 AACACAGTCATACCCGAGCATTTTTTAAACCTATTTCTACTGATAGGGAGTAATAGCTTGCTTGT
104772719 CAGATAAGAGCCTCAAACTTTGATGGTCGATTCTAATCTAAAACCATCTACCAACCAAGTAAGAG
260 CAGATAAGAGCCTCAAACTTTGATGGTCGATTCTAATCTAAAACCATCTACCAACCAAGTAAGAG
* *
104772784 TGCCATTTTTTTAATGCTAACAAGACAATGAGCATCTCCTTATCATAAATAAAATGTGTCTGATG
325 TGCCATTTTTTTAATGCTAACAAGACAACGAGCATCTCCTTATCATAAATAAAATATGTCTGATG
*
104772849 TTTTATTCCTAAGGCATTGATAAAGAAGGCAATTGGCTTCTCATGTTGTTGTAGCATAACTCCAA
390 TTTTATTCCTAAGGCATTGATAAAGAAGGCAATTGGCTTCCCATGTTGTTGTAGCATAACTCCAA
104772914 TACCATAACCACTAGCATCAGTG
455 TACCATAACCACTAGCATCAGTG
104772937 TCTAGGAAAA
Statistics
Matches: 462, Mismatches: 15, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
480 174 0.38
481 288 0.62
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (480 bp):
TAAATGTGATTGTTGATGAACTTTATTACACAACTATTGCATTTTAAGATCACTAACACAAGAAT
CCAATACCCTTGTCTAAAGGTGGGACCAGTTAGACTTGCTAAGACACTGAAAAAGCTGATCATCT
TCCTCTTGTGGCCTCTTGGATACAGCATTTGCAACCAGATTATGAGTACATTTTCTGTAAGTCTA
ACACAGTCATACCCGAGCATTTTTTAAACCTATTTCTACTGATAGGGAGTAATAGCTTGCTTGTC
AGATAAGAGCCTCAAACTTTGATGGTCGATTCTAATCTAAAACCATCTACCAACCAAGTAAGAGT
GCCATTTTTTTAATGCTAACAAGACAACGAGCATCTCCTTATCATAAATAAAATATGTCTGATGT
TTTATTCCTAAGGCATTGATAAAGAAGGCAATTGGCTTCCCATGTTGTTGTAGCATAACTCCAAT
ACCATAACCACTAGCATCAGTGCCA
Found at i:104775366 original size:53 final size:53
Alignment explanation
Indices: 104775240--104775390 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
104775230 ATAAGTGCGC
* **
104775240 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
104775293 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* * *
104775346 CCGTATAAGACCAT-GTCTGGGATATGACTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
104775391 ACCGTGTAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:104776675 original size:23 final size:23
Alignment explanation
Indices: 104776648--104776695 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
104776638 TAAAGAAAGA
* *
104776648 AAATAACTTGTTCGATTGAGTTC
1 AAATAACTTGCTCAATTGAGTTC
104776671 AAATAACTTGCTCAATTGAGTTC
1 AAATAACTTGCTCAATTGAGTTC
104776694 AA
1 AA
104776696 GAAATAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (23 bp):
AAATAACTTGCTCAATTGAGTTC
Found at i:104783012 original size:7 final size:7
Alignment explanation
Indices: 104783002--104783048 Score: 50
Period size: 6 Copynumber: 7.4 Consensus size: 7
104782992 TTATGGTTTC
*
104783002 AAATTAT
1 AAATAAT
104783009 AAATAAT
1 AAATAAT
104783016 -AATAAT
1 AAATAAT
104783022 -AATAAT
1 AAATAAT
104783028 -AATAAT
1 AAATAAT
104783034 -AATAAT
1 AAATAAT
104783040 -AATAAT
1 AAATAAT
104783046 AAA
1 AAA
104783049 ACAGGGGAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
6 30 0.79
7 8 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
AAATAAT
Found at i:104783018 original size:3 final size:3
Alignment explanation
Indices: 104783010--104783047 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
104783000 TCAAATTATA
104783010 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
104783048 AACAGGGGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:104784202 original size:18 final size:16
Alignment explanation
Indices: 104784179--104784213 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
104784169 AATTTAACTT
104784179 TAATTAAATTATTTAAAA
1 TAATT-AATT-TTTAAAA
104784197 TAATTAATTTTTAAAA
1 TAATTAATTTTTAAAA
104784213 T
1 T
104784214 TATAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATTAATTTTTAAAA
Found at i:104789613 original size:9 final size:9
Alignment explanation
Indices: 104789601--104789631 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
104789591 GAAGATTGAA
*
104789601 GAAGCTAAG
1 GAAGCCAAG
104789610 GAAGCCAAG
1 GAAGCCAAG
104789619 GAAGCCAAG
1 GAAGCCAAG
104789628 GAAG
1 GAAG
104789632 AGAAAAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.45, C:0.16, G:0.35, T:0.03
Consensus pattern (9 bp):
GAAGCCAAG
Found at i:104791343 original size:24 final size:23
Alignment explanation
Indices: 104791308--104791363 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 23
104791298 ATTATTTTTT
104791308 ATAAAAATTATTTTTAAAATTTA
1 ATAAAAATTATTTTTAAAATTTA
* *
104791331 ATAAATATATATTTTTAAAATTTT
1 ATAAAAAT-TATTTTTAAAATTTA
104791355 A-AAAAATTA
1 ATAAAAATTA
104791364 ATTAATTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.07
23 12 0.41
24 15 0.52
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
ATAAAAATTATTTTTAAAATTTA
Found at i:104791625 original size:26 final size:26
Alignment explanation
Indices: 104791596--104791653 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
104791586 GTATAAACAG
*
104791596 ACTAAAAACTGATACAATCTAGGTTA
1 ACTAAAAACTGATACAATCTAGGCTA
* *
104791622 ACTAAAAATTGATATAATCTAGGCTA
1 ACTAAAAACTGATACAATCTAGGCTA
*
104791648 AGTAAA
1 ACTAAA
104791654 CTAAAACTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (26 bp):
ACTAAAAACTGATACAATCTAGGCTA
Found at i:104807493 original size:22 final size:22
Alignment explanation
Indices: 104807468--104807509 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
104807458 ACAAACTGTT
*
104807468 AAACTATAATAAAAAAAACATA
1 AAACTACAATAAAAAAAACATA
* *
104807490 AAACTGCAATAAAACAAACA
1 AAACTACAATAAAAAAAACA
104807510 AGAAGCAACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.69, C:0.14, G:0.02, T:0.14
Consensus pattern (22 bp):
AAACTACAATAAAAAAAACATA
Found at i:104808745 original size:39 final size:39
Alignment explanation
Indices: 104808698--104808777 Score: 117
Period size: 39 Copynumber: 2.1 Consensus size: 39
104808688 ATTCAATTTT
*
104808698 AAGCATATATCA-AATTACACATATAATCACATAACATTC
1 AAGCATATATCACAA-TACACATATAATCACATAACACTC
* *
104808737 AAGCATATATCACAATACTCATATAATTACATAACACTC
1 AAGCATATATCACAATACACATATAATCACATAACACTC
104808776 AA
1 AA
104808778 ACGTTTATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.95
40 2 0.05
ACGTcount: A:0.49, C:0.21, G:0.03, T:0.28
Consensus pattern (39 bp):
AAGCATATATCACAATACACATATAATCACATAACACTC
Found at i:104808787 original size:39 final size:39
Alignment explanation
Indices: 104808701--104808796 Score: 113
Period size: 39 Copynumber: 2.5 Consensus size: 39
104808691 CAATTTTAAG
* * *
104808701 CATATATCA-AATTACACATATAATCACATAACATTCAAG
1 CATATATCACAA-TACTCATATAATCACATAACACTCAAA
*
104808740 CATATATCACAATACTCATATAATTACATAACACTCAAA
1 CATATATCACAATACTCATATAATCACATAACACTCAAA
* * *
104808779 CGTTTATCACCATACTCA
1 CATATATCACAATACTCA
104808797 AAAACATCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
39 47 0.96
40 2 0.04
ACGTcount: A:0.45, C:0.24, G:0.02, T:0.29
Consensus pattern (39 bp):
CATATATCACAATACTCATATAATCACATAACACTCAAA
Found at i:104815091 original size:8 final size:9
Alignment explanation
Indices: 104815029--104815112 Score: 102
Period size: 9 Copynumber: 9.6 Consensus size: 9
104815019 TTTGGTTAAA
104815029 AATTAACCG
1 AATTAACCG
*
104815038 AATTAAACG
1 AATTAACCG
104815047 AATT-ACTCG
1 AATTAAC-CG
104815056 AATTAACCG
1 AATTAACCG
*
104815065 AATTAACTG
1 AATTAACCG
104815074 AATTAACCG
1 AATTAACCG
*
104815083 -ATTACCCG
1 AATTAACCG
104815091 AATTAACCG
1 AATTAACCG
*
104815100 -ATTATCCG
1 AATTAACCG
104815108 AATTA
1 AATTA
104815113 CTCGAATTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
8 15 0.23
9 47 0.73
10 2 0.03
ACGTcount: A:0.42, C:0.20, G:0.11, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:104815093 original size:17 final size:18
Alignment explanation
Indices: 104815029--104815112 Score: 102
Period size: 17 Copynumber: 4.8 Consensus size: 18
104815019 TTTGGTTAAA
*
104815029 AATTAACCGAATTAAACG
1 AATTAACCGAATTAACCG
104815047 AATT-ACTCGAATTAACCG
1 AATTAAC-CGAATTAACCG
*
104815065 AATTAACTGAATTAACCG
1 AATTAACCGAATTAACCG
*
104815083 -ATTACCCGAATTAACCG
1 AATTAACCGAATTAACCG
*
104815100 -ATTATCCGAATTA
1 AATTAACCGAATTA
104815113 CTCGAATTGA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
17 29 0.49
18 28 0.47
19 2 0.03
ACGTcount: A:0.42, C:0.20, G:0.11, T:0.27
Consensus pattern (18 bp):
AATTAACCGAATTAACCG
Found at i:104815150 original size:17 final size:17
Alignment explanation
Indices: 104815128--104815188 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
104815118 ATTGAATCAC
104815128 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
104815145 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
104815165 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
104815182 TACATAA
1 TACATAA
104815189 GTCTTGAGAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 20 0.61
20 13 0.39
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:104815160 original size:37 final size:37
Alignment explanation
Indices: 104815119--104815193 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
104815109 ATTACTCGAA
104815119 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
104815156 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
104815193 T
1 T
104815194 GAGATTAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.33
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:104815207 original size:37 final size:37
Alignment explanation
Indices: 104815119--104815210 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
104815109 ATTACTCGAA
*
104815119 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
*
104815156 TTGAATCACTACATAATTAAAAACATTACATAAGTC-
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
104815192 TTGAGATTAAC-ACATAATT
1 TTGA-A-TAACTACATAATT
104815211 GAAATGTAAG
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
36 4 0.08
37 45 0.87
38 3 0.06
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.33
Consensus pattern (37 bp):
TTGAATAACTACATAATTAAAAACATTACATAAGTCT
Found at i:104817649 original size:21 final size:21
Alignment explanation
Indices: 104817620--104817678 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
104817610 GCAAGAAAAA
104817620 AATTATATAATAAATTAAAATAC
1 AATT-TATAAT-AATTAAAATAC
104817643 -ATTTATAAT-ATTAAAATAC
1 AATTTATAATAATTAAAATAC
104817662 ATATTTATAAT-ATTAAA
1 A-ATTTATAATAATTAAA
104817679 CAATTTTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.29
21 21 0.62
22 3 0.09
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTTATAATAATTAAAATAC
Found at i:104817655 original size:19 final size:20
Alignment explanation
Indices: 104817629--104817678 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
104817619 AAATTATATA
104817629 ATAA-ATTAAAATAC-ATTT
1 ATAATATTAAAATACAATTT
104817647 ATAATATTAAAATACATATTT
1 ATAATATTAAAATACA-ATTT
104817668 ATAATATTAAA
1 ATAATATTAAA
104817679 CAATTTTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.14
19 10 0.34
21 15 0.52
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAATATTAAAATACAATTT
Found at i:104817746 original size:12 final size:11
Alignment explanation
Indices: 104817726--104817759 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
104817716 AGAATACTTG
104817726 TTAAATAAAAT
1 TTAAATAAAAT
*
104817737 TTACAATAAAAA
1 TTA-AATAAAAT
104817749 TTAAATAAAAT
1 TTAAATAAAAT
104817760 ATTGGTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (11 bp):
TTAAATAAAAT
Found at i:104848544 original size:22 final size:22
Alignment explanation
Indices: 104848502--104848544 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
104848492 ATAAAAAAAT
* *
104848502 ATGTTATTTTCTTGTTGTTTTA
1 ATGTTATTTTCTTATTATTTTA
*
104848524 ATGTTATTTTTTTATTATTTT
1 ATGTTATTTTCTTATTATTTT
104848545 CTCCTTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.16, C:0.02, G:0.09, T:0.72
Consensus pattern (22 bp):
ATGTTATTTTCTTATTATTTTA
Found at i:104860354 original size:20 final size:19
Alignment explanation
Indices: 104860292--104860356 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
104860282 CATATTTTAT
*
104860292 TTTTTATAAT-ATTTTAGAA
1 TTTTT-TAATAATTTTAAAA
* *
104860311 TCTTTTAATAATTATTAATA
1 TTTTTTAATAATT-TTAAAA
104860331 TTTTTTAATAATTTTAAAA
1 TTTTTTAATAATTTTAAAA
104860350 GTTTTTT
1 -TTTTTT
104860357 TCACTCATCC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
18 4 0.11
19 12 0.32
20 22 0.58
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTTTTAATAATTTTAAAA
Found at i:104865987 original size:40 final size:40
Alignment explanation
Indices: 104865922--104865998 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
104865912 ACTATGTTTG
*
104865922 GCACTTAGTGTGCGTTTCGAGATAGCT-TCGGCTATATAAA
1 GCACTTAGTGTGCGATTCGAGATAGCTCT-GGCTATATAAA
*
104865962 GCACTTAGTGTGCGAATTGGA-ATAGCTCTGGCTATAT
1 GCACTTAGTGTGCG-ATTCGAGATAGCTCTGGCTATAT
104865999 GTGGCACTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 28 0.85
41 5 0.15
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGAGATAGCTCTGGCTATATAAA
Found at i:104866006 original size:40 final size:41
Alignment explanation
Indices: 104865920--104866016 Score: 101
Period size: 40 Copynumber: 2.4 Consensus size: 41
104865910 TGACTATGTT
*
104865920 TGGCACTTAGTGTGCG-TTTCGAGATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGAATTCGAGATAGCTTCGGCTATATA
** * *
104865960 AAGCACTTAGTGTGCGAATTGGA-ATAGC-TCTGGCTATATG
1 TGGCACTTAGTGTGCGAATTCGAGATAGCTTC-GGCTATATA
* *
104866000 TGGCACTAAGTCTGCGA
1 TGGCACTTAGTGTGCGA
104866017 TACTAGGATA
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.04
40 40 0.87
41 4 0.09
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (41 bp):
TGGCACTTAGTGTGCGAATTCGAGATAGCTTCGGCTATATA
Found at i:104877927 original size:60 final size:58
Alignment explanation
Indices: 104877800--104877928 Score: 141
Period size: 58 Copynumber: 2.2 Consensus size: 58
104877790 AACGTGACAT
** * * *
104877800 CCCCAAACTATGATTTTCATTCTAAAGTAGTTCCAAACTTCAAATATTTTAATTACAT
1 CCCCAAACTATGATACTCATTCTAAACTAGTTCCAAACTTCAAATATTCTAATTACAA
* * * *
104877858 CCCCGAACTATGATACTCATTCTAAACTGGTATCTAAGCTTCAAAATATTCTAATTACAA
1 CCCCAAACTATGATACTCATTCTAAACTAGT-TCCAAACTTC-AAATATTCTAATTACAA
**
104877918 CTTCAAACTAT
1 CCCCAAACTAT
104877929 CAATGTTTTA
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
58 26 0.46
59 8 0.14
60 23 0.40
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.35
Consensus pattern (58 bp):
CCCCAAACTATGATACTCATTCTAAACTAGTTCCAAACTTCAAATATTCTAATTACAA
Found at i:104878744 original size:2 final size:2
Alignment explanation
Indices: 104878737--104878765 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
104878727 CCTCACCGTC
104878737 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
104878766 AGATTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:104881188 original size:3 final size:3
Alignment explanation
Indices: 104881180--104881263 Score: 77
Period size: 3 Copynumber: 28.3 Consensus size: 3
104881170 ATGCACTTAT
*
104881180 ATA ATA ATA ATG ATA AT- ATA ATA GGA-A AT- ATA GA-A ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA -ATA ATA ATA ATA
* * *
104881224 ATA ATA ATA ATA ATA ACA TTA ATA ATA ATA ATA CTA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
104881264 AATTGCTAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
2 6 0.09
3 57 0.86
4 2 0.03
5 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:104882803 original size:44 final size:44
Alignment explanation
Indices: 104882755--104882848 Score: 111
Period size: 44 Copynumber: 2.1 Consensus size: 44
104882745 CTGTGGTTTT
* *
104882755 AATCTGCTCCGCTGTAA-CTCCAGGGAAATAGGAT-TACTAGCTTC
1 AATCTGCTCCACTGTAATCT-CAGGGAAATAAGATCT-CTAGCTTC
* * *
104882799 AATCTACTCCATTGTAATCTCAGGGAGATAAGATCTCTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTAGCTTC
104882843 AATCTG
1 AATCTG
104882849 ATGTGATCTA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
44 39 0.93
45 3 0.07
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTAGCTTC
Found at i:104882960 original size:142 final size:142
Alignment explanation
Indices: 104882711--104882975 Score: 388
Period size: 142 Copynumber: 1.9 Consensus size: 142
104882701 GACCTGATAC
* * * *
104882711 GATCCACTCTACTGTAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCGCTGTAACTCC
1 GATCCACTCTACTATAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGTAACTCC
* *
104882776 AGGGAAATAGGATTACTAGCTTCAATCTACTCCATTGTAATCTCAGGGAGATAAGATCTCTAGCT
66 AGAGAAATAGGATTACTAGCTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATCTCTAGCT
104882841 TCAATCTGATGT
131 TCAATCTGATGT
* * * * *
104882853 GATCTACTCTACTATAACTTTAGAGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGTAATTT
1 GATCCACTCTACTATAACTTCAGAGAGATAAGAT-CTGTGATTTTAATCCGCTCCACTGTAACTC
* **
104882917 CAGAGAGATAGGATTACTAGCTTCAATCTACTCTGCTGTAATCTCAGGGAGATAAGATC
65 CAGAGAAATAGGATTACTAGCTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATC
104882976 CTTTATTTTA
Statistics
Matches: 108, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
142 106 0.98
143 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (142 bp):
GATCCACTCTACTATAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGTAACTCC
AGAGAAATAGGATTACTAGCTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATCTCTAGCT
TCAATCTGATGT
Found at i:104883000 original size:44 final size:44
Alignment explanation
Indices: 104882877--104883106 Score: 184
Period size: 44 Copynumber: 5.2 Consensus size: 44
104882867 TAACTTTAGA
* * *
104882877 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATTTCAGA
1 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAATCTCAGG
* * * * ** *
104882921 GAGATAGGAT--TACTAGCTTCAATCTAC-TCTGCTGTAATCTCAGG
1 GAGATAAGATCCT-TTA-TTTTAATCCGCTTC-ACTGTAATCTCAGG
*
104882965 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAA-CTTCAGA
1 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAATC-TCAGG
* ** * * ** * * *
104883009 GAGATAGGATAGTGT-CTTCGATCTGCTCCGCTGTAATCTCAGG
1 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAATCTCAGG
104883052 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAA-CTTCAGG
1 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAATC-TCAGG
104883096 GAGATAAGATC
1 GAGATAAGATC
104883107 TGAAATTCTC
Statistics
Matches: 137, Mismatches: 39, Indels: 20
0.70 0.20 0.10
Matches are distributed among these distances:
42 1 0.01
43 35 0.26
44 96 0.70
45 4 0.03
46 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (44 bp):
GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAATCTCAGG
Found at i:104883080 original size:87 final size:88
Alignment explanation
Indices: 104882877--104883101 Score: 364
Period size: 87 Copynumber: 2.6 Consensus size: 88
104882867 TAACTTTAGA
* *
104882877 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATTTCAGAGAGATAGGATTACTAGCTTCA
1 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCA
*
104882942 ATCTACTCTGCTGTAATCTCAGG
66 ATCTACTCCGCTGTAATCTCAGG
*
104882965 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAACTTCAGAGAGATAGGA-TAGT-GTCTTC
1 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAACTTCAGAGAGATAGGATTACTAG-CTTC
* *
104883028 GATCTGCTCCGCTGTAATCTCAGG
65 AATCTACTCCGCTGTAATCTCAGG
*
104883052 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAACTTCAGGGAGATA
1 GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAACTTCAGAGAGATA
104883102 AGATCTGAAA
Statistics
Matches: 129, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
86 1 0.01
87 77 0.60
88 51 0.40
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (88 bp):
GAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCA
ATCTACTCCGCTGTAATCTCAGG
Found at i:104883174 original size:87 final size:86
Alignment explanation
Indices: 104883083--104883364 Score: 269
Period size: 87 Copynumber: 3.3 Consensus size: 86
104883073 ATCCGCTTCA
* * *
104883083 CTGTAACTTCAGGGAGATAAGATCTGAAATTCTCCGGTCTACTCCACTGTAACCTTAGGGAAATA
1 CTGTAACTTCAGAGAGATAAGATCTGAAATTCTCCGGTCT-CTCCACTGTAATCTCAGGGAAATA
104883148 AGACCTGATGCGATCTACTCTG
65 AGACCTGATGCGATCTACTCTG
* * * * *
104883170 CTGTAACTTCAGAGAGATAAGATCT---TTTAATCC-G---CTCCATTGTAATCTCAAGGAGATA
1 CTGTAACTTCAGAGAGATAAGATCTGAAATT-CTCCGGTCTCTCCACTGTAATCTCAGGGAAATA
* * * *
104883228 GGATTACT-AT-CTTTGATCTGCTCCG
65 AGA--CCTGATGC---GATCTACTCTG
* ** *
104883253 CTGTAA-TCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAAAT
1 CTGTAACT-TCAGAGAGATAAGATCTGAAATTCTCCGGTCT-CTCCACTGTAATCTCAGGGAAAT
104883317 AAGACCTGATGCGATCTACTCTG
64 AAGACCTGATGCGATCTACTCTG
104883340 CTGTAACTTCAGAGAGATAAGATCT
1 CTGTAACTTCAGAGAGATAAGATCT
104883365 TTTAATCCGC
Statistics
Matches: 151, Mismatches: 26, Indels: 36
0.71 0.12 0.17
Matches are distributed among these distances:
80 22 0.15
81 2 0.01
82 3 0.02
83 31 0.21
84 3 0.02
85 4 0.03
86 3 0.02
87 55 0.36
88 3 0.02
89 2 0.01
90 23 0.15
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (86 bp):
CTGTAACTTCAGAGAGATAAGATCTGAAATTCTCCGGTCTCTCCACTGTAATCTCAGGGAAATAA
GACCTGATGCGATCTACTCTG
Found at i:104883258 original size:44 final size:44
Alignment explanation
Indices: 104883203--104883490 Score: 204
Period size: 46 Copynumber: 6.6 Consensus size: 44
104883193 CTTTTAATCC
* * *
104883203 GCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCT
* * *
104883247 GCTCCGCTGTAATCTCAGGGAGATAAGATCTGA-AATTCTTTGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGAT-T-ACTA-TCTTTGATCT
* * *
104883293 GTTCCACTGTAATCTCAGGGAAATAAGA--CCTGATGC---GATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATTACT-AT-CTTTGATCT
* ** * * *
104883334 ACTCTGCTGTAA-CTTCAGAGAGATAAGA-T-C--T-TTTAATCC
1 GCTCCACTGTAATC-TCAGGGAGATAAGATTACTATCTTTGATCT
* * *
104883373 GCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCT
* ** *
104883417 GCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTTGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGAT-TACTA-TCTTTGATCT
**
104883463 ATTCCACTGTAATCTCAGGGAGATAAGA
1 GCTCCACTGTAATCTCAGGGAGATAAGA
104883491 CCTGTATATA
Statistics
Matches: 186, Mismatches: 39, Indels: 36
0.71 0.15 0.14
Matches are distributed among these distances:
38 1 0.01
39 22 0.12
40 3 0.02
41 26 0.14
43 2 0.01
44 58 0.31
45 5 0.03
46 69 0.37
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (44 bp):
GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCT
Found at i:104883270 original size:83 final size:83
Alignment explanation
Indices: 104883159--104883447 Score: 295
Period size: 83 Copynumber: 3.4 Consensus size: 83
104883149 GACCTGATGC
*
104883159 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTAATCCGCTCCATTGTAATCTCAAGGA
1 GATCTACTCCGCTGTAACTTCAGAGAGATAAGATCTTTTAATCCGCTCCATTGTAATCTCAAGGA
104883224 GATAGGATTACTATCTTT
66 GATAGGATTACTATCTTT
* * ** * * *
104883242 GATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAAT
1 GATCTACTCCGCTGTAACT-TCAGAGAGATAAGATC------T-TTTAATCCGCTCCATTGTAAT
* * * *
104883306 CTCAGGGAAATAAGA--CCTGATGC---
58 CTCAAGGAGATAGGATTACT-AT-CTTT
*
104883329 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTAATCCGCTCCATTGTAATCTCAAGGA
1 GATCTACTCCGCTGTAACTTCAGAGAGATAAGATCTTTTAATCCGCTCCATTGTAATCTCAAGGA
104883394 GATAGGATTACTATCTTT
66 GATAGGATTACTATCTTT
* *
104883412 GATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATCT
1 GATCTACTCCGCTGTAACT-TCAGAGAGATAAGATCT
104883448 AAAATTCTTT
Statistics
Matches: 162, Mismatches: 27, Indels: 34
0.73 0.12 0.15
Matches are distributed among these distances:
80 29 0.18
81 3 0.02
82 4 0.02
83 61 0.38
87 30 0.19
88 3 0.02
89 3 0.02
90 29 0.18
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (83 bp):
GATCTACTCCGCTGTAACTTCAGAGAGATAAGATCTTTTAATCCGCTCCATTGTAATCTCAAGGA
GATAGGATTACTATCTTT
Found at i:104883282 original size:170 final size:170
Alignment explanation
Indices: 104883083--104883494 Score: 736
Period size: 170 Copynumber: 2.4 Consensus size: 170
104883073 ATCCGCTTCA
** * * *
104883083 CTGTAA-CTTCAGGGAGATAAGATCTGAAATTCTCCGGTCTACTCCACTGTAACCTTAGGGAAAT
1 CTGTAATC-TCAGGGAGATAAGATCTGAAATTCTTTGGTCTATTCCACTGTAATCTCAGGGAAAT
104883147 AAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTAATCCGCTCCATTG
65 AAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTAATCCGCTCCATTG
104883212 TAATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCG
130 TAATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCG
*
104883253 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAAATA
1 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTATTCCACTGTAATCTCAGGGAAATA
104883318 AGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTAATCCGCTCCATTGT
66 AGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTAATCCGCTCCATTGT
104883383 AATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCG
131 AATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCG
* *
104883423 CTGTAATCTCAGGGAGATAAGATCTAAAATTCTTTGGTCTATTCCACTGTAATCTCAGGGAGATA
1 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTATTCCACTGTAATCTCAGGGAAATA
104883488 AGACCTG
66 AGACCTG
104883495 TATATAAACC
Statistics
Matches: 232, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
170 231 1.00
171 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (170 bp):
CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTATTCCACTGTAATCTCAGGGAAATA
AGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTAATCCGCTCCATTGT
AATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCG
Found at i:104883305 original size:46 final size:44
Alignment explanation
Indices: 104882952--104883490 Score: 243
Period size: 44 Copynumber: 12.5 Consensus size: 44
104882942 ATCTACTCTG
* * * *
104882952 CTGTAATCTCAGGGAGATAAGATCCT--TTATTTTAATCCGCTTCA
1 CTGTAATCTCAGGGAGATAAGAT-CTAATT-CTTTGATCTGCTCCA
* * * * *
104882996 CTGTAA-CTTCAGAGAGATAGGA--TAGTGTCTTCGATCTGCTCCG
1 CTGTAATC-TCAGGGAGATAAGATCTAAT-TCTTTGATCTGCTCCA
* * * *
104883039 CTGTAATCTCAGGGAGATAAGATCCT--TTATTTTAATCCGCTTCA
1 CTGTAATCTCAGGGAGATAAGAT-CTAATT-CTTTGATCTGCTCCA
** * *
104883083 CTGTAA-CTTCAGGGAGATAAGATCTGAAATTCTCCGGTCTACTCCA
1 CTGTAATC-TCAGGGAGATAAGATCT--AATTCTTTGATCTGCTCCA
* * * * * * * **
104883129 CTGTAACCTTAGGGAAATAAGACCTGATGC---GATCTACTCTG
1 CTGTAATCTCAGGGAGATAAGATCTAATTCTTTGATCTGCTCCA
* * *
104883170 CTGTAA-CTTCAGAGAGATAAGATC----T-TTTAATCCGCTCCA
1 CTGTAATC-TCAGGGAGATAAGATCTAATTCTTTGATCTGCTCCA
* * * * *
104883209 TTGTAATCTCAAGGAGATAGGAT-TACTATCTTTGATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCTAAT-TCTTTGATCTGCTCCA
* *
104883253 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCT--AATTCTTTGATCTGCTCCA
* * * * * **
104883299 CTGTAATCTCAGGGAAATAAGACCTGATGC---GATCTACTCTG
1 CTGTAATCTCAGGGAGATAAGATCTAATTCTTTGATCTGCTCCA
* * *
104883340 CTGTAA-CTTCAGAGAGATAAGATC----T-TTTAATCCGCTCCA
1 CTGTAATC-TCAGGGAGATAAGATCTAATTCTTTGATCTGCTCCA
* * * * *
104883379 TTGTAATCTCAAGGAGATAGGAT-TACTATCTTTGATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCTAAT-TCTTTGATCTGCTCCA
* **
104883423 CTGTAATCTCAGGGAGATAAGATCTAAAATTCTTTGGTCTATTCCA
1 CTGTAATCTCAGGGAGATAAGATCT--AATTCTTTGATCTGCTCCA
104883469 CTGTAATCTCAGGGAGATAAGA
1 CTGTAATCTCAGGGAGATAAGA
104883491 CCTGTATATA
Statistics
Matches: 363, Mismatches: 89, Indels: 84
0.68 0.17 0.16
Matches are distributed among these distances:
39 46 0.13
40 4 0.01
41 52 0.14
43 35 0.10
44 119 0.33
45 2 0.01
46 98 0.27
47 7 0.02
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (44 bp):
CTGTAATCTCAGGGAGATAAGATCTAATTCTTTGATCTGCTCCA
Done.