Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 315 of 362
Found at i:105261193 original size:16 final size:15
Alignment explanation
Indices: 105261175--105261221 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
105261165 TAAATTTTGA
105261175 AAAAATTAAATTTCT
1 AAAAATTAAATTTCT
* * * *
105261190 AAAACTAAAAGTTAT
1 AAAAATTAAATTTCT
105261205 AAAAATTAAATTTCT
1 AAAAATTAAATTTCT
105261220 AA
1 AA
105261222 TTTACTATGA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.34
Consensus pattern (15 bp):
AAAAATTAAATTTCT
Found at i:105293891 original size:69 final size:69
Alignment explanation
Indices: 105293778--105293916 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
105293768 GATAGGAAAA
*
105293778 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTCCAGCAGGTTTTGTAGTTGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTCCAGCAGGTTTTGTAGTGGTGGTAGG
105293843 GCTG
66 GCTG
*
105293847 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTCCAGCAGGTTTTGTAGTGGTGGTAGG
105293912 GCTG
66 GCTG
105293916 A
1 A
105293917 TAGAGTCTTG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (69 bp):
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTCCAGCAGGTTTTGTAGTGGTGGTAGG
GCTG
Found at i:105307901 original size:54 final size:55
Alignment explanation
Indices: 105307831--105307939 Score: 184
Period size: 54 Copynumber: 2.0 Consensus size: 55
105307821 GTGAAAATAA
*
105307831 TTTTCAAGTTCAAGGATTAACTTGAATAAAAATAATCAAGTATAAAAACTATCAC
1 TTTTCAAGTTCAAGGATTAACTTGAATAAAAATAATCAAATATAAAAACTATCAC
* *
105307886 TTTT-AAGTTCGAGGATTAACTTGGATAAAAATAATCAAATATAAAAACTATCAC
1 TTTTCAAGTTCAAGGATTAACTTGAATAAAAATAATCAAATATAAAAACTATCAC
105307940 CAAGTTTAGC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
54 47 0.92
55 4 0.08
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (55 bp):
TTTTCAAGTTCAAGGATTAACTTGAATAAAAATAATCAAATATAAAAACTATCAC
Found at i:105312193 original size:15 final size:17
Alignment explanation
Indices: 105312162--105312194 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
105312152 CTCTACTTAT
105312162 TTTAATTATATAATTTA
1 TTTAATTATATAATTTA
105312179 TTTAATTA-A-AATTTA
1 TTTAATTATATAATTTA
105312194 T
1 T
105312195 AATTTTATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTAATTATATAATTTA
Found at i:105312783 original size:19 final size:19
Alignment explanation
Indices: 105312761--105312799 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
105312751 TGACTTATTG
**
105312761 ATTAAATTGGAATTAAAAA
1 ATTAAATTAAAATTAAAAA
*
105312780 ATTAATTTAAAATTAAAAA
1 ATTAAATTAAAATTAAAAA
105312799 A
1 A
105312800 AGTAAAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (19 bp):
ATTAAATTAAAATTAAAAA
Found at i:105313444 original size:3 final size:3
Alignment explanation
Indices: 105313438--105313758 Score: 131
Period size: 3 Copynumber: 106.0 Consensus size: 3
105313428 AAAGCTGCTG
* * *
105313438 CTT CTT CTT CTT C-T CTTT CTC CTT C-T CATT CTC CTT CTT C-T CCT
1 CTT CTT CTT CTT CTT C-TT CTT CTT CTT C-TT CTT CTT CTT CTT CTT
* * * * * * * * * *
105313482 CCT CCT CCT CCT CCT CTT CCT CCT CCTT CTT CTT TTT TTT CTT TTT
1 CTT CTT CTT CTT CTT CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT
* * *
105313528 CCT CATT CTT CTT CTT ATT CCTT CTT CTT CTT CTT CTT CTT CTT CCT
1 CTT C-TT CTT CTT CTT CTT -CTT CTT CTT CTT CTT CTT CTT CTT CTT
* * * *
105313575 CCT CATT CTT CTC CTT C-T CCT CTTT CTT C-T CTT -TCT CATT CTC CTT
1 CTT C-TT CTT CTT CTT CTT CTT C-TT CTT CTT CTT CT-T C-TT CTT CTT
* * * * *
105313621 CTT CTC CTT CTC CTC CTT C-T CCT CCT CTT -TT -TT CCTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT -CTT CTT CTT
* * ** * * *
105313664 CTT CTT CTT CTT CTT CGTC CTC CCC CTC CTC CTT CTT CTT CTT TTT
1 CTT CTT CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* * * *
105313710 CTT TTT CCTT -TT CCTC CTC CTC CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT -CTT CTT -CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
105313756 CTT
1 CTT
105313759 TAATTCAACT
Statistics
Matches: 259, Mismatches: 37, Indels: 44
0.76 0.11 0.13
Matches are distributed among these distances:
2 19 0.07
3 216 0.83
4 23 0.09
5 1 0.00
ACGTcount: A:0.02, C:0.41, G:0.00, T:0.57
Consensus pattern (3 bp):
CTT
Found at i:105313548 original size:19 final size:19
Alignment explanation
Indices: 105313510--105313572 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
105313500 CCTCCTCCTT
* * *
105313510 CTTCTTTTTTTTCTTTTTC
1 CTTCTTCTTCTTCTTATTC
105313529 C-TCATTCTTCTTCTTATTC
1 CTTC-TTCTTCTTCTTATTC
*
105313548 CTTCTTCTTCTTCTTCTT-
1 CTTCTTCTTCTTCTTATTC
105313566 CTTCTTC
1 CTTCTTC
105313573 CTCCTCATTC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
18 9 0.24
19 27 0.71
20 2 0.05
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (19 bp):
CTTCTTCTTCTTCTTATTC
Found at i:105313699 original size:37 final size:37
Alignment explanation
Indices: 105313653--105313753 Score: 139
Period size: 37 Copynumber: 2.7 Consensus size: 37
105313643 TCCTCTTTTT
* *
105313653 TCCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTCCCCC
1 TCCTCCTTCTTCTTCTTCTTCTTCTTCCTCCTCCCCC
* * ** *
105313690 TCCTCCTTCTTCTTCTTTTTCTTTTTCCTTTTCCTCC
1 TCCTCCTTCTTCTTCTTCTTCTTCTTCCTCCTCCCCC
105313727 TCCTCCTTCTTCTTCTTCTTCTTCTTC
1 TCCTCCTTCTTCTTCTTCTTCTTCTTC
105313754 TTCTTTAATT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.00, C:0.42, G:0.01, T:0.57
Consensus pattern (37 bp):
TCCTCCTTCTTCTTCTTCTTCTTCTTCCTCCTCCCCC
Found at i:105316953 original size:37 final size:40
Alignment explanation
Indices: 105316857--105316954 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
105316847 AACACACCAG
* * ** *
105316857 TTTGGCACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCAGATAAACCAAAGTAATAA
* *
105316897 TTTGACACCCAGTGTCTCATCAGCTAAACCAAAGT-A-AA
1 TTTGACACCCAGTGCCTCATCAGATAAACCAAAGTAATAA
105316935 -TTGACACCCAGTGCCTCATC
1 TTTGACACCCAGTGCCTCATC
105316955 GAATTAATCT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
37 19 0.38
38 2 0.04
39 1 0.02
40 28 0.56
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (40 bp):
TTTGACACCCAGTGCCTCATCAGATAAACCAAAGTAATAA
Found at i:105317193 original size:9 final size:9
Alignment explanation
Indices: 105317181--105317206 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
105317171 ATATATATCA
105317181 ATTCAATCC
1 ATTCAATCC
105317190 ATTCAATCC
1 ATTCAATCC
105317199 ATTCAATC
1 ATTCAATC
105317207 AACTTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (9 bp):
ATTCAATCC
Found at i:105317904 original size:11 final size:10
Alignment explanation
Indices: 105317888--105317969 Score: 51
Period size: 11 Copynumber: 7.8 Consensus size: 10
105317878 GTCTTTCTCC
105317888 TTTTCTTTCCT
1 TTTTCTTT-CT
105317899 TTTTCTTTCT
1 TTTTCTTTCT
*
105317909 TTTTCCCTTCT
1 TTTT-CTTTCT
* *
105317920 GTTTCATTTGT
1 TTTTC-TTTCT
105317931 TCTTTCTTTCT
1 T-TTTCTTTCT
*
105317942 TTCT-TTTCT
1 TTTTCTTTCT
*
105317951 ATTTCTATT-T
1 TTTTCT-TTCT
105317961 CTTTTCTTT
1 -TTTTCTTT
105317970 TATTATTATA
Statistics
Matches: 55, Mismatches: 10, Indels: 13
0.71 0.13 0.17
Matches are distributed among these distances:
9 7 0.13
10 13 0.24
11 31 0.56
12 4 0.07
ACGTcount: A:0.04, C:0.22, G:0.02, T:0.72
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:105322506 original size:15 final size:13
Alignment explanation
Indices: 105322473--105322497 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105322463 ACAAACACTA
105322473 AAATTTTCACACG
1 AAATTTTCACACG
105322486 AAATTTTCACAC
1 AAATTTTCACAC
105322498 ATATAATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:105336544 original size:25 final size:25
Alignment explanation
Indices: 105336489--105336546 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
105336479 GGCTCGCCTA
105336489 AGCTTCCCAATATACAGCTCAATTG
1 AGCTTCCCAATATACAGCTCAATTG
* *
105336514 AACTTCCCATTATACAGCTCACA-TG
1 AGCTTCCCAATATACAGCTCA-ATTG
105336539 AGCTTCCC
1 AGCTTCCC
105336547 GTTTACATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.28
Consensus pattern (25 bp):
AGCTTCCCAATATACAGCTCAATTG
Found at i:105345218 original size:11 final size:11
Alignment explanation
Indices: 105345198--105345241 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
105345188 AGATAAATGT
*
105345198 TATTTAATTAA
1 TATTTTATTAA
105345209 TATTTTATTAA
1 TATTTTATTAA
* *
105345220 GACTTTTAGTAA
1 TA-TTTTATTAA
105345232 TATTTTATTA
1 TATTTTATTA
105345242 TTAAATGACT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:105346503 original size:19 final size:19
Alignment explanation
Indices: 105346481--105346518 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
105346471 ATTAAGAATG
105346481 GAAGATATAATTATACTAA
1 GAAGATATAATTATACTAA
105346500 GAAGATATAATTATACTAA
1 GAAGATATAATTATACTAA
105346519 ATAGTGTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (19 bp):
GAAGATATAATTATACTAA
Found at i:105346726 original size:22 final size:22
Alignment explanation
Indices: 105346701--105346767 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
105346691 TTTATCGTTC
105346701 TGCACTTCGGA-GCTTACTATTT
1 TGCACTTC-GATGCTTACTATTT
*
105346723 TGCACTTCGATGCTTAGTGA-TT
1 TGCACTTCGATGCTTACT-ATTT
*
105346745 TGCACTTCGATGCATACTATTT
1 TGCACTTCGATGCTTACTATTT
105346767 T
1 T
105346768 ATTAGTGTAC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
21 3 0.08
22 35 0.90
23 1 0.03
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.42
Consensus pattern (22 bp):
TGCACTTCGATGCTTACTATTT
Found at i:105358539 original size:43 final size:44
Alignment explanation
Indices: 105358470--105358558 Score: 153
Period size: 43 Copynumber: 2.0 Consensus size: 44
105358460 TTCATATACA
105358470 TATATTACATAAAAAAATATTAGCAACCTAACGCACGGGGAAAT
1 TATATTACATAAAAAAATATTAGCAACCTAACGCACGGGGAAAT
* *
105358514 TATATTACAT-AAAAAATATTAGCAACCTATCGCACTGGGAAAT
1 TATATTACATAAAAAAATATTAGCAACCTAACGCACGGGGAAAT
105358557 TA
1 TA
105358559 GAAAATTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 33 0.77
44 10 0.23
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (44 bp):
TATATTACATAAAAAAATATTAGCAACCTAACGCACGGGGAAAT
Found at i:105359433 original size:3 final size:3
Alignment explanation
Indices: 105359414--105359467 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
105359404 AATGTAAGAG
* * * * *
105359414 AAT AAT AA- AAG ATT AAT AAT AAT TAT AAT AGT AAA AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
105359461 AAT AAT A
1 AAT AAT A
105359468 GCTAAGTGGG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:105359572 original size:15 final size:15
Alignment explanation
Indices: 105359554--105359584 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
105359544 AAAAATATTA
105359554 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
105359569 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
105359584 A
1 A
105359585 GAAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
ATAATAGTAATAAAT
Found at i:105359872 original size:9 final size:9
Alignment explanation
Indices: 105359851--105359997 Score: 52
Period size: 9 Copynumber: 16.4 Consensus size: 9
105359841 GTATAAAAAA
105359851 AATA-TAAT
1 AATAGTAAT
*
105359859 CATAGTAAT
1 AATAGTAAT
**
105359868 AATAGTTGT
1 AATAGTAAT
* *
105359877 AGTAATAAT
1 AATAGTAAT
*
105359886 AATAGTAAGAAA
1 AATAGT---AAT
*
105359898 AATAGTGAT
1 AATAGTAAT
*
105359907 AATA-TAAC
1 AATAGTAAT
* *
105359915 AATAATAGT
1 AATAGTAAT
*
105359924 AATA-TAAC
1 AATAGTAAT
*
105359932 AAAAG-AAT
1 AATAGTAAT
*
105359940 AATAATAAT
1 AATAGTAAT
105359949 AATAGTAAT
1 AATAGTAAT
**
105359958 -GGAGATAAT
1 AATAG-TAAT
*
105359967 AATAATAAT
1 AATAGTAAT
*
105359976 AATAATAAT
1 AATAGTAAT
* *
105359985 GATACTAAT
1 AATAGTAAT
105359994 AATA
1 AATA
105359998 ATATAAATAA
Statistics
Matches: 98, Mismatches: 32, Indels: 17
0.67 0.22 0.12
Matches are distributed among these distances:
8 21 0.21
9 68 0.69
10 1 0.01
12 8 0.08
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (9 bp):
AATAGTAAT
Found at i:105359885 original size:3 final size:3
Alignment explanation
Indices: 105359879--105360000 Score: 88
Period size: 3 Copynumber: 40.7 Consensus size: 3
105359869 ATAGTTGTAG
* * * * * * *
105359879 TAA TAA TAA TAG TAA GAA AAA TAG TGA TAA T-A TAA CAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
105359926 T-A TAA CAA -AA GAA TAA TAA TAA TAA TAG TAA TGGAGA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T--A-A TAA TAA TAA
* *
105359972 TAA TAA TAA TAA TGA TAC TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
105360001 TAAATAAAAA
Statistics
Matches: 92, Mismatches: 21, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
2 6 0.07
3 82 0.89
4 1 0.01
5 1 0.01
6 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:105359923 original size:20 final size:21
Alignment explanation
Indices: 105359884--105359923 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
105359874 TGTAGTAATA
*
105359884 ATAATAGTAAGAAAAATAGTG
1 ATAATAGTAACAAAAATAGTG
*
105359905 ATAATA-TAACAATAATAGT
1 ATAATAGTAACAAAAATAGT
105359924 AATATAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.12, T:0.28
Consensus pattern (21 bp):
ATAATAGTAACAAAAATAGTG
Found at i:105360006 original size:12 final size:13
Alignment explanation
Indices: 105359937--105360014 Score: 72
Period size: 12 Copynumber: 5.9 Consensus size: 13
105359927 ATAACAAAAG
105359937 AATAATAATA-AT
1 AATAATAATATAT
* *
105359949 AATAGTAATGGAGAT
1 AATAATAAT--ATAT
105359964 AATAATAATA-AT
1 AATAATAATATAT
105359976 AATAATAATGATACT
1 AATAATAAT-ATA-T
105359991 AATAATAATATA-
1 AATAATAATATAT
*
105360003 AATAAAAATATA
1 AATAATAATATA
105360015 AACAACAAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
12 30 0.53
13 2 0.04
14 5 0.09
15 20 0.35
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (13 bp):
AATAATAATATAT
Found at i:105361147 original size:33 final size:33
Alignment explanation
Indices: 105361100--105361168 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
105361090 AGTGTCAGAC
105361100 GCGTGGAGCATGGTGACCAAGGCTGAGGGGCAT
1 GCGTGGAGCATGGTGACCAAGGCTGAGGGGCAT
* * * *
105361133 GCGTGGGGCGTGGTGGCCAAGGCTGAGGGGTAT
1 GCGTGGAGCATGGTGACCAAGGCTGAGGGGCAT
105361166 GCG
1 GCG
105361169 GCAGTTGAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.16, C:0.17, G:0.51, T:0.16
Consensus pattern (33 bp):
GCGTGGAGCATGGTGACCAAGGCTGAGGGGCAT
Found at i:105361953 original size:43 final size:44
Alignment explanation
Indices: 105361897--105362394 Score: 359
Period size: 43 Copynumber: 11.5 Consensus size: 44
105361887 CGCCTTCGAT
* * *
105361897 CTGTTTCCCTACTGGTTA-GGGTTATAAGATCTGTGAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGTTATAAGATCTGTAAATTCAAC
* *
105361940 CTGTTACCCTACTGCTTAGGGGTT-TAAGGTCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGTTATAAGATCTGTAAATTCAAC
* ** * ** * *
105361983 TTGTTACCCTACTGCTTAGGGGGTTA-AAGCCCAT-CACCTTCTAT
1 CTGTTACCCTACTGCTTA-GGGGTTATAAGATC-TGTAAATTCAAC
* * *
105362027 CTGTTTCCCTACTGCTTA-GGGTGT-TAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGGGT-TATAAGATCTGTAAATTCAAC
* ** * ** *
105362070 CTGTTACTCTACTGCTTAGGGGGTTA-AAGCCCTTCGT--CTTTGAT
1 CTGTTACCCTACTGCTTA-GGGGTTATAAGATC-T-GTAAATTCAAC
* * * *
105362114 CTGTTTCCCTACTGCTTA-GGGTGACAAGATCTGTGAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGTTATAAGATCTGTAAATTCAAC
* *
105362157 CTGTTACCCTACTGCTTAGGGGTT-TAAGGTTTGTAAATTCAGA-
1 CTGTTACCCTACTGCTTAGGGGTTATAAGATCTGTAAATTCA-AC
* ** * ** * *
105362200 TTGTTACCCTACTGCTTAGGGGGTTA-AAGCCCAT-CACCTTCGAT
1 CTGTTACCCTACTGCTTA-GGGGTTATAAGATC-TGTAAATTCAAC
* * *
105362244 CTGTTTCCCTACTGCTTA-GGGTGT-TAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGGGT-TATAAGATCTGTAAATTCAAC
* *
105362287 CTGTTACCCTACTGCTTA-GGGTGATAAGATCTGTGAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGTTATAAGATCTGTAAATTCAAC
**
105362330 CTGTTACCCTACTGCTTAGGGGTT-TAA-AGTCTGTAAATTCGGC
1 CTGTTACCCTACTGCTTAGGGGTTATAAGA-TCTGTAAATTCAAC
*
105362373 TTGTTACCCTACTGCTTAGGGG
1 CTGTTACCCTACTGCTTAGGGG
105362395 GTCAAGACCC
Statistics
Matches: 351, Mismatches: 77, Indels: 54
0.73 0.16 0.11
Matches are distributed among these distances:
41 2 0.01
42 17 0.05
43 226 0.64
44 97 0.28
45 7 0.02
46 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGTTATAAGATCTGTAAATTCAAC
Found at i:105362031 original size:87 final size:87
Alignment explanation
Indices: 105361940--105362183 Score: 339
Period size: 87 Copynumber: 2.8 Consensus size: 87
105361930 TGAATTCAAC
* * *
105361940 CTGTTACCCTACTGCTTAGGG-GTTTAAGGTCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGGTG-TTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
105362004 GGTTAAAGCCCATCACCTTCT-AT
65 GGTTAAAGCCCATCACCTT-TGAT
* *
105362027 CTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAATTTAGCCTGTTACTCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
* **
105362092 GTTAAAGCCCTTCGTCTTTGAT
66 GTTAAAGCCCATCACCTTTGAT
** * *
105362114 CTGTTTCCCTACTGCTTAGGGTGACAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
*
105362179 TTTAA
66 GTTAA
105362184 GGTTTGTAAA
Statistics
Matches: 140, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
86 1 0.01
87 138 0.99
88 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (87 bp):
CTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
GTTAAAGCCCATCACCTTTGAT
Found at i:105362031 original size:130 final size:130
Alignment explanation
Indices: 105361854--105362528 Score: 471
Period size: 130 Copynumber: 5.2 Consensus size: 130
105361844 ATTTCTAGCC
* * * * *
105361854 TGTTACCCTACTACTTAGGGGGTTAAGGCTCATCGCCTTCGATCTGTTTCCCTACTGGTTAGGGT
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGT
105361919 TATAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCAGCT
66 TATAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCAGCT
*
105361984 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACCTTCTATCTGTTTCCCTACTGCTTAGGGT
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGT
* * * * * ** ** *
105362049 GT-TAAGATCTGTAAATTTAGCCTGTTACTCTACTGCTTAGGGGGTTAAAGCCCTTCGT-CTTTG
66 -TATAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTA-GGGGTTTAAGGTC-T-GTAAATTC
*
105362112 ATC-
127 AGCT
* * * ** * * * * *
105362115 TGTTTCCCTACTGCTTA--GGGTGACAAGATCTGTGA-ATTCAACCTGTTACCCTACTGCTTAGG
1 TGTTACCCTACTGCTTAGGGGGTTA-AAG-CCCATCACCTTCGATCTGTTTCCCTACTGCTTA-G
* * * * * * * ** **
105362177 GGTT-TAAGGTTTGTAAATTCAGA-TTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACCTT
63 GGTTATAAGATCTGTGAATTCA-ACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGT-AAATT
*
105362240 C-GAT
126 CAGCT
* * * ** * ** * * *
105362244 CTGTTTCCCTACTGCTTAGGGTGTT-AAGATCTGTAAATTTAG-CCTGTTACCCTACTGCTTAGG
1 -TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCACCTTCGATCTGTTTCCCTACTGCTTAGG
* * *
105362307 GTGATAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAAGTCTGTAAATTCGG
64 GTTATAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCAG
105362372 CT
129 CT
* * *** * *
105362374 TGTTACCCTACTGCTTAGGGGG-TCAAGACCCTTTGTCTTCGATTTG-CTCCACTACTGCTTAGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCACCTTCGATCTGTTTCC-CTACTGCTTAGG
** *** * * * * *
105362437 GAGATAAGATC-G-GCAATTCGGTCTGTTACCCTACTACATAGGGGTTTAAGATTTGTAAATTTA
64 GTTATAAGATCTGTG-AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCA
*
105362500 GCC
128 GCT
*
105362503 TGTTACCCTACTGGTTAGGGGGTTAA
1 TGTTACCCTACTGCTTAGGGGGTTAA
105362529 GGCTTGTGGA
Statistics
Matches: 433, Mismatches: 89, Indels: 46
0.76 0.16 0.08
Matches are distributed among these distances:
127 1 0.00
128 2 0.00
129 120 0.28
130 264 0.61
131 36 0.08
132 8 0.02
133 2 0.00
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.35
Consensus pattern (130 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGT
TATAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCAGCT
Found at i:105362224 original size:217 final size:217
Alignment explanation
Indices: 105361849--105362307 Score: 801
Period size: 217 Copynumber: 2.1 Consensus size: 217
105361839 ATTTGATTTC
* * * *
105361849 TAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCATCGCCTTCGATCTGTTTCCCTACTGGTT
1 TAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
* *
105361914 AGGGTTATAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATT
66 AGGGTGACAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATT
* *
105361979 CAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACCTTCTATCTGTTTCCCTACTGCTT
131 CAGATTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACCTTCGATCTGTTTCCCTACTGCTT
105362044 AGGGTGTTAAGATCTGTAAATT
196 AGGGTGTTAAGATCTGTAAATT
* * * *
105362066 TAGCCTGTTACTCTACTGCTTAGGGGGTTAAAGCCCTTCGTCTTTGATCTGTTTCCCTACTGCTT
1 TAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
*
105362131 AGGGTGACAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGTAAATT
66 AGGGTGACAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATT
105362196 CAGATTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACCTTCGATCTGTTTCCCTACTGCTT
131 CAGATTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACCTTCGATCTGTTTCCCTACTGCTT
105362261 AGGGTGTTAAGATCTGTAAATT
196 AGGGTGTTAAGATCTGTAAATT
105362283 TAGCCTGTTACCCTACTGCTTAGGG
1 TAGCCTGTTACCCTACTGCTTAGGG
105362308 TGATAAGATC
Statistics
Matches: 228, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
217 228 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (217 bp):
TAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
AGGGTGACAAGATCTGTGAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATT
CAGATTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACCTTCGATCTGTTTCCCTACTGCTT
AGGGTGTTAAGATCTGTAAATT
Found at i:105362703 original size:64 final size:64
Alignment explanation
Indices: 105362602--105362729 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
105362592 TCATGTATCT
*
105362602 ATGCTTATGCCAAATAATTAAGATGCAATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAAGATGCAATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
* * * *
105362666 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAAGATGCAATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
105362730 TTATGAATGA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAAGATGCAATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:105369172 original size:15 final size:15
Alignment explanation
Indices: 105369152--105369181 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
105369142 AATAATAATT
105369152 ATAATAGTAAAAATA
1 ATAATAGTAAAAATA
*
105369167 ATAATAGTAATAATA
1 ATAATAGTAAAAATA
105369182 GCTAAGTGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
ATAATAGTAAAAATA
Found at i:105369286 original size:15 final size:15
Alignment explanation
Indices: 105369268--105369298 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
105369258 AAAAATATTA
105369268 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
105369283 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
105369298 A
1 A
105369299 GAAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
ATAATAGTAATAAAT
Found at i:105369840 original size:26 final size:26
Alignment explanation
Indices: 105369811--105369918 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
105369801 TGGTACAAAT
*
105369811 TGATAGTGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
105369837 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105369863 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105369889 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105369915 TGAT
1 TGAT
105369919 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105372684 original size:3 final size:3
Alignment explanation
Indices: 105372678--105372796 Score: 82
Period size: 3 Copynumber: 39.7 Consensus size: 3
105372668 ATAGTTGTAG
* * * * * * *
105372678 TAA TAA TAA TAG TAA GAA AAA TAG TGA TAA T-A TAA CAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
105372725 T-A TAA CAA -AA GAA TAA TAA TAA TAA TAG TAA TGGAGA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T--A-A TAA TAA TAA
* *
105372771 TAA TAA TAA TGA TAC TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
105372797 TAAATAAAAA
Statistics
Matches: 89, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
2 6 0.07
3 79 0.89
4 1 0.01
5 1 0.01
6 2 0.02
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:105372722 original size:20 final size:21
Alignment explanation
Indices: 105372683--105372722 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
105372673 TGTAGTAATA
*
105372683 ATAATAGTAAGAAAAATAGTG
1 ATAATAGTAACAAAAATAGTG
*
105372704 ATAATA-TAACAATAATAGT
1 ATAATAGTAACAAAAATAGT
105372723 AATATAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.12, T:0.28
Consensus pattern (21 bp):
ATAATAGTAACAAAAATAGTG
Found at i:105372802 original size:12 final size:13
Alignment explanation
Indices: 105372736--105372810 Score: 59
Period size: 12 Copynumber: 5.9 Consensus size: 13
105372726 ATAACAAAAG
105372736 AATAATAATA-AT
1 AATAATAATATAT
* *
105372748 AATAGTAATGGAGAT
1 AATAATAAT--ATAT
105372763 AATAATAATA-AT
1 AATAATAATATAT
* *
105372775 AATAATGATA-CT
1 AATAATAATATAT
105372787 AATAATAATATA-
1 AATAATAATATAT
*
105372799 AATAAAAATATA
1 AATAATAATATA
105372811 AACAACAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
12 40 0.77
13 1 0.02
14 1 0.02
15 10 0.19
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (13 bp):
AATAATAATATAT
Found at i:105372802 original size:24 final size:24
Alignment explanation
Indices: 105372737--105372803 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
105372727 TAACAAAAGA
*
105372737 ATAATAATAATA-ATAGTAATGGAG
1 ATAATAATAATATA-AATAATGGAG
*
105372761 ATAATAATAATA-ATAATAAT-GAT
1 ATAATAATAATATA-AATAATGGAG
105372784 ACTAATAATAATATAAATAA
1 A-TAATAATAATATAAATAA
105372804 AAATATAAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 3 0.08
24 35 0.90
25 1 0.03
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.31
Consensus pattern (24 bp):
ATAATAATAATATAAATAATGGAG
Found at i:105373943 original size:33 final size:33
Alignment explanation
Indices: 105373899--105373967 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
105373889 AGTGTCAGAC
105373899 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT
1 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT
* * *
105373932 GCGTGGGGCGTGGTGGCCAAGGCTGAGGGGTAT
1 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT
105373965 GCG
1 GCG
105373968 GCGGCTGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.14, C:0.17, G:0.52, T:0.16
Consensus pattern (33 bp):
GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT
Found at i:105374637 original size:13 final size:13
Alignment explanation
Indices: 105374619--105374644 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105374609 TTGCAAAAAT
105374619 TACTCCATTTGTC
1 TACTCCATTTGTC
105374632 TACTCCATTTGTC
1 TACTCCATTTGTC
105374645 ACATGTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.08, T:0.46
Consensus pattern (13 bp):
TACTCCATTTGTC
Found at i:105375157 original size:13 final size:13
Alignment explanation
Indices: 105375134--105375177 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
105375124 AAATAAACAA
105375134 TTAATAGAATCAG
1 TTAATAGAATCAG
105375147 TTAATCA-AATCAG
1 TTAAT-AGAATCAG
*
105375160 TTAATAGAATCAA
1 TTAATAGAATCAG
105375173 TTAAT
1 TTAAT
105375178 TAAACCAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 1 0.04
13 26 0.93
14 1 0.04
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (13 bp):
TTAATAGAATCAG
Found at i:105376208 original size:19 final size:19
Alignment explanation
Indices: 105376184--105376222 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
105376174 ATCTAAAATG
105376184 ATAAAATATGTATCCTTCA
1 ATAAAATATGTATCCTTCA
*
105376203 ATAAAATATTTATCCTTCA
1 ATAAAATATGTATCCTTCA
105376222 A
1 A
105376223 CTCTTATCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (19 bp):
ATAAAATATGTATCCTTCA
Found at i:105377645 original size:37 final size:37
Alignment explanation
Indices: 105377567--105377703 Score: 118
Period size: 37 Copynumber: 3.7 Consensus size: 37
105377557 TTTATCGAGC
105377567 CAAATCTTACTGTTATACTGAATGAAACTCAATCGAA
1 CAAATCTTACTGTTATACTGAATGAAACTCAATCGAA
* * * * *
105377604 CAAATCATACTGTTATACTGAATGGAGCTTAA-CTAA
1 CAAATCTTACTGTTATACTGAATGAAACTCAATCGAA
** ** *
105377640 GCAAATCTTACCATTATACTGAAT-AATGTTTAATCGAGA
1 -CAAATCTTACTGTTATACTGAATGAA-ACTCAATCGA-A
* *
105377679 -AAATTTTACTGTTATACTGAGTGAA
1 CAAATCTTACTGTTATACTGAATGAA
105377704 TTTCAAACGA
Statistics
Matches: 80, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
36 4 0.05
37 71 0.89
38 4 0.05
39 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (37 bp):
CAAATCTTACTGTTATACTGAATGAAACTCAATCGAA
Found at i:105382293 original size:40 final size:40
Alignment explanation
Indices: 105382246--105382325 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
105382236 TCATTTTGGA
105382246 CAAAACCAGATTCATTTCAAAATAATTTCATTTCTTCATT
1 CAAAACCAGATTCATTTCAAAATAATTTCATTTCTTCATT
105382286 CAAAACCAGATTCATTTCAAAATAATTTCATTTCTTCATT
1 CAAAACCAGATTCATTTCAAAATAATTTCATTTCTTCATT
105382326 TACATTTTGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.40
Consensus pattern (40 bp):
CAAAACCAGATTCATTTCAAAATAATTTCATTTCTTCATT
Found at i:105382379 original size:19 final size:19
Alignment explanation
Indices: 105382343--105382380 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
105382333 TGGAGAAAAC
**
105382343 CATAATCATTTCTGAATGT
1 CATAATCATTTCCAAATGT
105382362 CATAATCATTTCCAAATGT
1 CATAATCATTTCCAAATGT
105382381 TTCTCATTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (19 bp):
CATAATCATTTCCAAATGT
Found at i:105389884 original size:42 final size:42
Alignment explanation
Indices: 105389820--105389922 Score: 152
Period size: 42 Copynumber: 2.5 Consensus size: 42
105389810 TCGAGACTAT
* * *
105389820 GTGTAAGACCATATATGAGATATGGAATCATTATGAGAATTC
1 GTGTAAGACCATATCTGGGATATGGAATCAATATGAGAATTC
* *
105389862 GTGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGAATCAATATGAGAATTC
*
105389904 GTGTAAGACCATAGCTGGG
1 GTGTAAGACCATATCTGGG
105389923 CTATTGGCGT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGAATCAATATGAGAATTC
Found at i:105391461 original size:14 final size:14
Alignment explanation
Indices: 105391442--105391476 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
105391432 TTGTTTCACT
105391442 GAAAATGACTTTTG
1 GAAAATGACTTTTG
*
105391456 GAAAATGATTTTTG
1 GAAAATGACTTTTG
105391470 GAAAATG
1 GAAAATG
105391477 GATTACTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.34
Consensus pattern (14 bp):
GAAAATGACTTTTG
Found at i:105392045 original size:16 final size:16
Alignment explanation
Indices: 105392014--105392050 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
105392004 ATGTTAAGAA
105392014 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
105392030 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
105392046 TATTA
1 TATTA
105392051 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:105392110 original size:16 final size:16
Alignment explanation
Indices: 105392064--105392113 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
105392054 TAAAATTGAA
105392064 ATATTAAATAATTTATT
1 ATATT-AATAATTTATT
**
105392081 A-A--AATAATAAATT
1 ATATTAATAATTTATT
105392094 ATATTAATAATTTATT
1 ATATTAATAATTTATT
105392110 ATAT
1 ATAT
105392114 GACTACATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 10 0.38
14 1 0.04
16 14 0.54
17 1 0.04
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTAATAATTTATT
Found at i:105394865 original size:241 final size:241
Alignment explanation
Indices: 105394442--105394924 Score: 912
Period size: 241 Copynumber: 2.0 Consensus size: 241
105394432 GGCGAGGAAG
105394442 ATTGGAAGTAGATGGACAAGCAACAATATGGAATACGAAACACAATGAATAAACTAATCAAAATC
1 ATTGGAAGTAGATGGACAAGCAACAATATGGAATACGAAACACAATGAATAAACTAATCAAAATC
105394507 AAAGAGACAGCTATAAAACCAATAGCTACATTTCAGTCTTGGTTAAACTTTAAACAACAAATAAA
66 AAAGAGACAGCTATAAAACCAATAGCTACATTTCAGTCTTGGTTAAACTTTAAACAACAAATAAA
*
105394572 CTGCCTAGGATGTTACTGTTAGTAATAGATACCAAACATATTCCCATAATATGACTATTACCTAG
131 CTGCCTAGGATGTTACTGGTAGTAATAGATACCAAACATATTCCCATAATATGACTATTACCTAG
*
105394637 AGACCAAATAACCCTAAGTCACTTGCTCACTCACCAGGTTCAAACT
196 AGACCAAATAACCCTAAATCACTTGCTCACTCACCAGGTTCAAACT
*
105394683 ATTGGAAGTAGATGGACAAGCAGCAATATGGAATACGAAACACAATGAATAAACTAATCAAAATC
1 ATTGGAAGTAGATGGACAAGCAACAATATGGAATACGAAACACAATGAATAAACTAATCAAAATC
105394748 AAAGAGACAGCTATAAAACCAATAGCTACATTTCAGTCTTGGTTAAACTTTAAACAACAAATAAA
66 AAAGAGACAGCTATAAAACCAATAGCTACATTTCAGTCTTGGTTAAACTTTAAACAACAAATAAA
*
105394813 CTGCCTAGGATGTTACTGGTAGTAATAGATACCAAACATATTCCTATAATATGACTATTACCTAG
131 CTGCCTAGGATGTTACTGGTAGTAATAGATACCAAACATATTCCCATAATATGACTATTACCTAG
* *
105394878 GGAGCAAATAACCCTAAATCACTTGCTCACTCACCAGGTTCAAACT
196 AGACCAAATAACCCTAAATCACTTGCTCACTCACCAGGTTCAAACT
105394924 A
1 A
105394925 ATGAAGATTA
Statistics
Matches: 236, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 236 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.24
Consensus pattern (241 bp):
ATTGGAAGTAGATGGACAAGCAACAATATGGAATACGAAACACAATGAATAAACTAATCAAAATC
AAAGAGACAGCTATAAAACCAATAGCTACATTTCAGTCTTGGTTAAACTTTAAACAACAAATAAA
CTGCCTAGGATGTTACTGGTAGTAATAGATACCAAACATATTCCCATAATATGACTATTACCTAG
AGACCAAATAACCCTAAATCACTTGCTCACTCACCAGGTTCAAACT
Found at i:105398043 original size:18 final size:18
Alignment explanation
Indices: 105398010--105398048 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
105398000 ATTACAAAAA
*
105398010 AAATTTAAAATAATTTTT
1 AAATTTAAAATAATTTAT
105398028 AAATTTCAAAAT-ATTTAT
1 AAATTT-AAAATAATTTAT
105398046 AAA
1 AAA
105398049 AAATTTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
AAATTTAAAATAATTTAT
Found at i:105398054 original size:21 final size:22
Alignment explanation
Indices: 105398028--105398074 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
105398018 AATAATTTTT
*
105398028 AAATTTCAAAA-TATTTATAAA
1 AAATTTCAAAATTATATATAAA
105398049 AAATTTCAAAATTTATATATAAA
1 AAATTTCAAAA-TTATATATAAA
105398072 AAA
1 AAA
105398075 GTTATGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.48
23 12 0.52
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (22 bp):
AAATTTCAAAATTATATATAAA
Found at i:105401039 original size:42 final size:42
Alignment explanation
Indices: 105400977--105401062 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
105400967 CTATGCAAAA
*
105400977 ACGTCGATTTGACATTTTACAAGAAGCTAAGCCAAGAATTCT
1 ACGTCGATTTGACATCTTACAAGAAGCTAAGCCAAGAATTCT
105401019 ACGTCGATTTGACATCTTACAAGAAGCTAAGCCAAGAATTCT
1 ACGTCGATTTGACATCTTACAAGAAGCTAAGCCAAGAATTCT
105401061 AC
1 AC
105401063 ATTGCTAATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (42 bp):
ACGTCGATTTGACATCTTACAAGAAGCTAAGCCAAGAATTCT
Found at i:105405290 original size:25 final size:26
Alignment explanation
Indices: 105405255--105405328 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
105405245 GAAGCTTTGG
105405255 AGAGCCATTAA-CGGGAAGCTCACAA
1 AGAGCCATTAATCGGGAAGCTCACAA
* * * *
105405280 AGAGCCTTTAATCTGGAAGCTCTCGA
1 AGAGCCATTAATCGGGAAGCTCACAA
*
105405306 AGAGCCA-TATATCGGGATGCTCA
1 AGAGCCATTA-ATCGGGAAGCTCA
105405329 TAAGAGTTAC
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
25 12 0.31
26 27 0.69
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (26 bp):
AGAGCCATTAATCGGGAAGCTCACAA
Found at i:105407217 original size:21 final size:22
Alignment explanation
Indices: 105407165--105407217 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
105407155 AAATAAAGTC
*
105407165 CATGTA-CAAATATCATCATCT
1 CATGTATCATATATCATCATCT
* *
105407186 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATCATCT
105407208 CATGTATCAT
1 CATGTATCAT
105407218 CATTTAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATCATCT
Found at i:105409968 original size:26 final size:26
Alignment explanation
Indices: 105409938--105410028 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 26
105409928 CATGATTTTA
*
105409938 CACTTTGGTGCCTCTTATTTGTTATG
1 CACTTTGGTGCCTCCTATTTGTTATG
105409964 CACTTTGGTGCCTCCTATTTTGTTATG
1 CACTTTGGTGCCTCCTA-TTTGTTATG
** *
105409991 CA-TTTCATTGCCTCCTGTTCTGTTATG
1 CACTTT-GGTGCCTCCTATT-TGTTATG
*
105410018 CACATTGGTGC
1 CACTTTGGTGC
105410029 TTGTGTTTCC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
26 21 0.39
27 31 0.57
28 2 0.04
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.46
Consensus pattern (26 bp):
CACTTTGGTGCCTCCTATTTGTTATG
Found at i:105410654 original size:17 final size:18
Alignment explanation
Indices: 105410616--105410663 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
105410606 AAGGAGATAA
105410616 AAAAATAAATAAATAACG
1 AAAAATAAATAAATAACG
* *
105410634 -AAAATACATAAAT-AGG
1 AAAAATAAATAAATAACG
*
105410650 AAAAATAAACAAAT
1 AAAAATAAATAAAT
105410664 GAATTAAATC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 2 0.08
17 23 0.92
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.17
Consensus pattern (18 bp):
AAAAATAAATAAATAACG
Found at i:105411977 original size:21 final size:22
Alignment explanation
Indices: 105411951--105412007 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
105411941 ATATTGGACT
*
105411951 TTGTCTTGAGACATAAAC-CCC
1 TTGTCTTGAGACATAAACTCAC
* * *
105411972 TTGTCTCGAGACACACACTCAC
1 TTGTCTTGAGACATAAACTCAC
105411994 TTGTCTTGAGACAT
1 TTGTCTTGAGACAT
105412008 GATAAATTTG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (22 bp):
TTGTCTTGAGACATAAACTCAC
Found at i:105414375 original size:43 final size:43
Alignment explanation
Indices: 105414308--105414421 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 43
105414298 TTATTTCGGA
* *
105414308 AAACGTCGCTATAGAGCATGATCTTTAGCGGCGCTTTCCCTAC
1 AAACGTCGCTATAGAACATGATCTTTAGCGGCGCTTTCACTAC
* * * * *
105414351 AAACGTTGCTATAGAACATAATCTTAAGCGGCGCTTTTATTAC
1 AAACGTCGCTATAGAACATGATCTTTAGCGGCGCTTTCACTAC
* *
105414394 AAACGTCGCTAAAGAACATGATTTTTAG
1 AAACGTCGCTATAGAACATGATCTTTAG
105414422 TGACCTTTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (43 bp):
AAACGTCGCTATAGAACATGATCTTTAGCGGCGCTTTCACTAC
Found at i:105414975 original size:66 final size:66
Alignment explanation
Indices: 105414848--105414981 Score: 162
Period size: 66 Copynumber: 2.0 Consensus size: 66
105414838 ATTTTAAAGC
* * * * * *
105414848 TGTAGCTAGAGTTCGTCATATTTTTTTGTTGCCTCTGCTGCCCTTGTTGTTGCATCTGCTTTAAG
1 TGTAGCTAGAGTTCATCATATTTTTTTGTAGCCTCTGCTGCCCTCGATGCTGCATCAGCTTTAAG
105414913 T
66 T
* * * *
105414914 TGTAGCTGGAGTTCATCATATTTTCTTTG-AGCCTCTGCTTCTCTCGATGCTGCCTCAGCTTTAA
1 TGTAGCTAGAGTTCATCATATTTT-TTTGTAGCCTCTGCTGCCCTCGATGCTGCATCAGCTTTAA
105414978 GT
65 GT
105414980 TG
1 TG
105414982 AGCAATTTGC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
66 53 0.93
67 4 0.07
ACGTcount: A:0.13, C:0.22, G:0.21, T:0.44
Consensus pattern (66 bp):
TGTAGCTAGAGTTCATCATATTTTTTTGTAGCCTCTGCTGCCCTCGATGCTGCATCAGCTTTAAG
T
Found at i:105419539 original size:21 final size:20
Alignment explanation
Indices: 105419481--105419539 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
105419471 CTCACGCGGA
*
105419481 CGTGTGTTTTGAACACACGG
1 CGTGTGTTTTGGACACACGG
* ** *
105419501 CAGTGTCTGGTGGGCACACGGG
1 C-GTGTGTTTTGGACACAC-GG
105419523 CGTGTGTTTTGGACACA
1 CGTGTGTTTTGGACACA
105419540 TAGCCGTGTT
Statistics
Matches: 28, Mismatches: 9, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
20 1 0.04
21 24 0.86
22 3 0.11
ACGTcount: A:0.17, C:0.20, G:0.36, T:0.27
Consensus pattern (20 bp):
CGTGTGTTTTGGACACACGG
Found at i:105419554 original size:42 final size:42
Alignment explanation
Indices: 105419481--105419560 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
105419471 CTCACGCGGA
*
105419481 CGTGTGTTTTGAACACACGGCAGTGTCTGGTGGGCACACGGG
1 CGTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACACGGG
* * * *
105419523 CGTGTGTTTTGGACACATAGCCGTGTTTGGTGGGCACA
1 CGTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACA
105419561 TGAGAGTGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.16, C:0.20, G:0.36, T:0.28
Consensus pattern (42 bp):
CGTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACACGGG
Found at i:105419570 original size:42 final size:42
Alignment explanation
Indices: 105419482--105419570 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 42
105419472 TCACGCGGAC
* * *
105419482 GTGTGTTTTGAACACACGGCAGTGTCTGGTGGGCACACGGGC
1 GTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACACGAGA
* * * * *
105419524 GTGTGTTTTGGACACATAGCCGTGTTTGGTGGGCACATGAGA
1 GTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACACGAGA
105419566 GTGTG
1 GTGTG
105419571 AGTCCGTCAC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.17, C:0.17, G:0.38, T:0.28
Consensus pattern (42 bp):
GTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACACGAGA
Found at i:105424992 original size:21 final size:23
Alignment explanation
Indices: 105424961--105425003 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
105424951 ATCCTCCTGG
105424961 CGCCACGCACC-CCCCGTACACA
1 CGCCACGCACCACCCCGTACACA
*
105424983 CGCCA-GCACCACCCTGTACAC
1 CGCCACGCACCACCCCGTACAC
105425004 CTCGAGCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.23, C:0.56, G:0.14, T:0.07
Consensus pattern (23 bp):
CGCCACGCACCACCCCGTACACA
Found at i:105427173 original size:130 final size:130
Alignment explanation
Indices: 105426938--105427306 Score: 533
Period size: 130 Copynumber: 2.8 Consensus size: 130
105426928 AAAATTCTTC
*
105426938 AAAACGAAGATGAAATTTGATGTTTGGCAATTCGCGGAATCATGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGATGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * *
105427003 TTTCGCATTTGCTCAAAATAATCGAATTTCCCTTCGAAATTTCATTCATATCTTTTAAAATCCCT
66 TTTCGCATTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATATCTTTTAAAATCCCT
* * *
105427068 TAAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAACCGTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGATGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * * *
105427133 TTTCGCATTTGTTCAAAATAATCGAATATCACTTTAAAATTTCGTTCATGTCTTTTAAAATCCCT
66 TTTCGCATTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATATCTTTTAAAATCCCT
** * * * * *
105427198 AAAACGAAGGCGATATGTGATATTTGGCAATTCGCGGGATCGTGCCCTAACGTGTTGGGTAGCAA
1 AAAACGAAGATGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * *
105427263 TTTCCCGA-TTGTTTAAAATAATCAAATATCCCTTCAAAATTTCA
66 TTTCGC-ATTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCA
105427307 CTCGGGTCTT
Statistics
Matches: 212, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
130 211 1.00
131 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (130 bp):
AAAACGAAGATGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
TTTCGCATTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATATCTTTTAAAATCCCT
Found at i:105427366 original size:130 final size:128
Alignment explanation
Indices: 105426958--105427418 Score: 487
Period size: 130 Copynumber: 3.5 Consensus size: 128
105426948 TGAAATTTGA
* *
105426958 TGTTTGGCAATTCGCGGAATCATGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGCTCAAAATA
1 TGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGTTCAAAATA
* * * * *
105427023 ATCGAATTTCCCTTCGAAATTTCATTCATATCTTTTAAAATCCCTT-AAACGAAGATGAGATTTG
66 ATCGAATATCCCTTCAAAATTTCATTCATGTCTTTTAAAAT-CCTTAAAACGAAG--GCGATATG
*
105427087 A
128 G
*
105427088 TGTTTGGCAATTCGCGGAACCGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGTTCAAAATA
1 TGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGTTCAAAATA
* * * *
105427153 ATCGAATATCACTTTAAAATTTCGTTCATGTCTTTTAAAATCCCTAAAACGAAGGCGATATGTG
66 ATCGAATATCCCTTCAAAATTTCATTCATGTCTTTTAAAATCCTTAAAACGAAGGCGATATG-G
* * * * *
105427217 ATATTTGGCAATTCGCGGGATCGTGCCCTAACGTGTTGGGTAGCAATTTCCCGA-TTGTTTAAAA
1 -TGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGC-ATTTGTTCAAAA
* * ** * * *
105427281 TAATCAAATATCCCTTCAAAATTTCACTCGGGTCTTCTAAAAATCCTTTAAAATGAAGGCAATAC
64 TAATCGAATATCCCTTCAAAATTTCATTCATGTCTT-TTAAAATCC-TTAAAACGAAGGCGATA-
105427346 TCGG
126 T-GG
* * * * * * ** * * *
105427350 TGTTTGACAATTCG-GGATTCATGCCTTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACA
1 TGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGTTCAAAATA
105427414 ATCGA
66 ATCGA
105427419 GTATTCATTT
Statistics
Matches: 276, Mismatches: 46, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
128 6 0.02
129 3 0.01
130 189 0.68
131 49 0.18
132 26 0.09
133 2 0.01
134 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (128 bp):
TGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGTTCAAAATA
ATCGAATATCCCTTCAAAATTTCATTCATGTCTTTTAAAATCCTTAAAACGAAGGCGATATGG
Found at i:105438717 original size:12 final size:12
Alignment explanation
Indices: 105438702--105438751 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
105438692 TTTCATTTCA
*
105438702 TCCTCATCTTCC
1 TCCTCCTCTTCC
*
105438714 TCCTCCTCTTCT
1 TCCTCCTCTTCC
*
105438726 TCCTCCTCCTCC
1 TCCTCCTCTTCC
*
105438738 TCCTCCTCCTCC
1 TCCTCCTCTTCC
105438750 TC
1 TC
105438752 TTCTTGTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.02, C:0.58, G:0.00, T:0.40
Consensus pattern (12 bp):
TCCTCCTCTTCC
Found at i:105438719 original size:3 final size:3
Alignment explanation
Indices: 105438711--105438751 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
105438701 ATCCTCATCT
* *
105438711 TCC TCC TCC TCT TCT TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
105438752 TTCTTGTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (3 bp):
TCC
Found at i:105438726 original size:15 final size:15
Alignment explanation
Indices: 105438702--105438756 Score: 83
Period size: 15 Copynumber: 3.7 Consensus size: 15
105438692 TTTCATTTCA
*
105438702 TCCTCATCTTCCTCC
1 TCCTCTTCTTCCTCC
105438717 TCCTCTTCTTCCTCC
1 TCCTCTTCTTCCTCC
* *
105438732 TCCTCCTCCTCCTCC
1 TCCTCTTCTTCCTCC
105438747 TCCTCTTCTT
1 TCCTCTTCTT
105438757 GTTGTTGTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.02, C:0.55, G:0.00, T:0.44
Consensus pattern (15 bp):
TCCTCTTCTTCCTCC
Found at i:105442314 original size:18 final size:18
Alignment explanation
Indices: 105442291--105442357 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 18
105442281 TTCATAGATA
105442291 AGTAAAACTAAAACTCTT
1 AGTAAAACTAAAACTCTT
* *
105442309 AGTAAAACCTGATATAA-TAGATA
1 AGTAAAA-CT-A-A-AACT--CTT
105442332 AGTAAAACTAAAACTCTT
1 AGTAAAACTAAAACTCTT
105442350 AGTAAAAC
1 AGTAAAAC
105442358 CTGATATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
18 16 0.42
19 4 0.11
20 3 0.08
21 3 0.08
22 4 0.11
23 8 0.21
ACGTcount: A:0.52, C:0.13, G:0.09, T:0.25
Consensus pattern (18 bp):
AGTAAAACTAAAACTCTT
Found at i:105442341 original size:41 final size:42
Alignment explanation
Indices: 105442284--105442387 Score: 174
Period size: 41 Copynumber: 2.5 Consensus size: 42
105442274 TCTTTATTTC
105442284 ATAGATAAGTAAAACTAAAACTCTTAGTAAAACCTG-ATATA
1 ATAGATAAGTAAAACTAAAACTCTTAGTAAAACCTGAATATA
105442325 ATAGATAAGTAAAACTAAAACTCTTAGTAAAACCTGATATATA
1 ATAGATAAGTAAAACTAAAACTCTTAGTAAAACCTGA-ATATA
* *
105442368 ATAAATAAATAAAACTAAAA
1 ATAGATAAGTAAAACTAAAA
105442388 ACTCCTATTG
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
41 36 0.61
43 23 0.39
ACGTcount: A:0.56, C:0.11, G:0.08, T:0.26
Consensus pattern (42 bp):
ATAGATAAGTAAAACTAAAACTCTTAGTAAAACCTGAATATA
Found at i:105448244 original size:43 final size:43
Alignment explanation
Indices: 105448197--105448299 Score: 129
Period size: 43 Copynumber: 2.3 Consensus size: 43
105448187 ATTAATTAAA
* * *
105448197 AATTAAATTAAAATAGAAGTTGTGATAATTATACATTTAAAAT
1 AATTAAATTAAAATAAAAGTTGTGATAATTACACATTAAAAAT
105448240 AATTATAATGT--AATAAAAGTTGTGATAATTACACATTAAAAAT
1 AATTA-AAT-TAAAATAAAAGTTGTGATAATTACACATTAAAAAT
105448283 AATTAAAATTTAAAATA
1 AATT-AAA-TTAAAATA
105448300 CAATTATTAA
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
43 41 0.80
44 5 0.10
45 5 0.10
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (43 bp):
AATTAAATTAAAATAAAAGTTGTGATAATTACACATTAAAAAT
Found at i:105456281 original size:26 final size:26
Alignment explanation
Indices: 105456251--105456324 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
105456241 TATATTAATA
* * *
105456251 AAATATATATTACT-TAATATTTAAGT
1 AAATATATA-TAATATAATAATAAAGT
105456277 AAATATATATAATATAATAATAAAGT
1 AAATATATATAATATAATAATAAAGT
105456303 AAATATA-A-AATA-AATAAGTAAA
1 AAATATATATAATATAATAA-TAAA
105456325 TGAAATAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
23 5 0.12
24 8 0.19
25 4 0.09
26 26 0.60
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (26 bp):
AAATATATATAATATAATAATAAAGT
Found at i:105456493 original size:61 final size:61
Alignment explanation
Indices: 105456428--105456545 Score: 200
Period size: 61 Copynumber: 1.9 Consensus size: 61
105456418 ATATTTAAAT
* * *
105456428 TCATACTAGAATTCTCGACTAAAAAGATAAAAGATAAAGTTGACGAGGAATAGCTCGGAAG
1 TCATACTAGAATTCTCGACTAAAAAGACAAAAGATAAAGTCGACGAGGAATACCTCGGAAG
*
105456489 TCATACTAGAATTCTCGACTAAAAAGGCAAAAGATAAAGTCGACGAGGAATACCTCG
1 TCATACTAGAATTCTCGACTAAAAAGACAAAAGATAAAGTCGACGAGGAATACCTCG
105456546 AAATTTCCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.20
Consensus pattern (61 bp):
TCATACTAGAATTCTCGACTAAAAAGACAAAAGATAAAGTCGACGAGGAATACCTCGGAAG
Found at i:105456906 original size:37 final size:37
Alignment explanation
Indices: 105456864--105456957 Score: 170
Period size: 37 Copynumber: 2.5 Consensus size: 37
105456854 ACTTCGAGTT
*
105456864 GATGAGACACTGGGTGCCAATTTACTTCGGTTTAGCC
1 GATGAGACACTGGGTGCCAATTTACTTCGATTTAGCC
105456901 GATGAGACACTGGGTGCCAATTTACTTCGATTTAGCC
1 GATGAGACACTGGGTGCCAATTTACTTCGATTTAGCC
*
105456938 GATGAGACACTAGGTGCCAA
1 GATGAGACACTGGGTGCCAA
105456958 ACTGGTGTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (37 bp):
GATGAGACACTGGGTGCCAATTTACTTCGATTTAGCC
Found at i:105457194 original size:16 final size:17
Alignment explanation
Indices: 105457143--105457213 Score: 69
Period size: 16 Copynumber: 4.4 Consensus size: 17
105457133 TTATATACTC
*
105457143 ATGAATTGA-GTATGGT
1 ATGAATTGATGTATTGT
* *
105457159 ATGAAATGATGTATT-C
1 ATGAATTGATGTATTGT
105457175 ATGAATTGA-GTATTGT
1 ATGAATTGATGTATTGT
105457191 ATG-ATTGATGTCATTGT
1 ATGAATTGATGT-ATTGT
*
105457208 ACGAAT
1 ATGAAT
105457214 AAATATGGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
15 10 0.23
16 21 0.48
17 11 0.25
18 2 0.05
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.39
Consensus pattern (17 bp):
ATGAATTGATGTATTGT
Found at i:105465965 original size:49 final size:50
Alignment explanation
Indices: 105465888--105466129 Score: 326
Period size: 49 Copynumber: 4.9 Consensus size: 50
105465878 ATCTATTGTG
* * *
105465888 AGGTCACGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
105465938 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * **
105465988 CGATCACGTGTGTAGTACTGAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
*
105466038 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
105466088 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
105466130 AATAGCTTTG
Statistics
Matches: 167, Mismatches: 23, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
49 81 0.49
50 47 0.28
51 39 0.23
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:105466070 original size:101 final size:98
Alignment explanation
Indices: 105465891--105466129 Score: 325
Period size: 101 Copynumber: 2.4 Consensus size: 98
105465881 TATTGTGAGG
* * *
105465891 TCACGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
105465956 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCAGATAA-TT-GA
* * ** *
105465991 TCACGTGTGTAGTACTGAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
105466056 TAAGTGCAGGCTACTACGTGTACCAGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCAGATAATTGA
* *
105466090 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
105466130 AATAGCTTTG
Statistics
Matches: 122, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
99 37 0.30
100 42 0.34
101 43 0.35
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAGATAATTGA
Found at i:105469389 original size:17 final size:15
Alignment explanation
Indices: 105469350--105469390 Score: 66
Period size: 14 Copynumber: 2.8 Consensus size: 15
105469340 ATAATTCATA
105469350 AATATATTATTTATT
1 AATATATTATTTATT
*
105469365 AATATATTA-TAATT
1 AATATATTATTTATT
105469379 AATATATTATTT
1 AATATATTATTT
105469391 TTTGGTTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
AATATATTATTTATT
Found at i:105469553 original size:32 final size:32
Alignment explanation
Indices: 105469508--105469572 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
105469498 TTTAGATCAA
*
105469508 AAATGAATCTAAACAGA-TGGTTATCTAAATTC
1 AAATGAATCTAAACA-ACTAGTTATCTAAATTC
* * *
105469540 AAATGCATTTAAACAACTATTTATCTAAATTC
1 AAATGAATCTAAACAACTAGTTATCTAAATTC
105469572 A
1 A
105469573 TTATAAGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.34
Consensus pattern (32 bp):
AAATGAATCTAAACAACTAGTTATCTAAATTC
Found at i:105470065 original size:21 final size:22
Alignment explanation
Indices: 105470040--105470098 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
105470030 GTTTTAAGAA
*
105470040 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
105470061 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
105470083 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
105470099 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:105470113 original size:26 final size:24
Alignment explanation
Indices: 105470069--105470118 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
105470059 ATTTGTTTTA
*
105470069 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
105470093 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
105470119 TTTTTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:105479705 original size:15 final size:15
Alignment explanation
Indices: 105479685--105479714 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
105479675 CATTTTATTT
*
105479685 ATATTAGGATAATTA
1 ATATTAAGATAATTA
105479700 ATATTAAGATAATTA
1 ATATTAAGATAATTA
105479715 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:105479742 original size:27 final size:26
Alignment explanation
Indices: 105479681--105479743 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
105479671 ACTCCATTTT
105479681 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * *
105479708 ATAATTATTAGGATTATTTAATTTTAAG
1 AT-TTTATTAGGA-TAATTAATATTAAG
105479736 ATTTTATT
1 ATTTTATT
105479744 TTAATTATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 15 0.50
28 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:105482648 original size:189 final size:189
Alignment explanation
Indices: 105482328--105482707 Score: 760
Period size: 189 Copynumber: 2.0 Consensus size: 189
105482318 GTAGAGTAGC
105482328 GGTGTGATAGCCGCTCCGTCCGCCACCGGTAAAAGATATCAATAGCGGTGTAAACAATTTTTTAC
1 GGTGTGATAGCCGCTCCGTCCGCCACCGGTAAAAGATATCAATAGCGGTGTAAACAATTTTTTAC
105482393 GCTAAACTGAGCCGTAACACAAAAATCTTATTACTGTTAGGGTTTCAAAAATACCTTATATAATT
66 GCTAAACTGAGCCGTAACACAAAAATCTTATTACTGTTAGGGTTTCAAAAATACCTTATATAATT
105482458 TCCTGCTTTGGTCTGTCGGAAAGTTGAAGGCAATTAAGGGACTGGAGGAGTGGGGTACA
131 TCCTGCTTTGGTCTGTCGGAAAGTTGAAGGCAATTAAGGGACTGGAGGAGTGGGGTACA
105482517 GGTGTGATAGCCGCTCCGTCCGCCACCGGTAAAAGATATCAATAGCGGTGTAAACAATTTTTTAC
1 GGTGTGATAGCCGCTCCGTCCGCCACCGGTAAAAGATATCAATAGCGGTGTAAACAATTTTTTAC
105482582 GCTAAACTGAGCCGTAACACAAAAATCTTATTACTGTTAGGGTTTCAAAAATACCTTATATAATT
66 GCTAAACTGAGCCGTAACACAAAAATCTTATTACTGTTAGGGTTTCAAAAATACCTTATATAATT
105482647 TCCTGCTTTGGTCTGTCGGAAAGTTGAAGGCAATTAAGGGACTGGAGGAGTGGGGTACA
131 TCCTGCTTTGGTCTGTCGGAAAGTTGAAGGCAATTAAGGGACTGGAGGAGTGGGGTACA
105482706 GG
1 GG
105482708 CGGAAGAAGA
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
189 191 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (189 bp):
GGTGTGATAGCCGCTCCGTCCGCCACCGGTAAAAGATATCAATAGCGGTGTAAACAATTTTTTAC
GCTAAACTGAGCCGTAACACAAAAATCTTATTACTGTTAGGGTTTCAAAAATACCTTATATAATT
TCCTGCTTTGGTCTGTCGGAAAGTTGAAGGCAATTAAGGGACTGGAGGAGTGGGGTACA
Found at i:105495206 original size:60 final size:60
Alignment explanation
Indices: 105495108--105495222 Score: 194
Period size: 60 Copynumber: 1.9 Consensus size: 60
105495098 TGATACTGCG
105495108 AGCTCCCTTAACTGTCCTCTCACTGTACATCTCATGTGTATCCATCTAGTGGGGTCTGGA
1 AGCTCCCTTAACTGTCCTCTCACTGTACATCTCATGTGTATCCATCTAGTGGGGTCTGGA
* * **
105495168 AGCTCCCTTAACTTTCCTCTCATTGTACATCTTGTGTGTATCCATCTAGTGGGGT
1 AGCTCCCTTAACTGTCCTCTCACTGTACATCTCATGTGTATCCATCTAGTGGGGT
105495223 TTAGTCGGGT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.17, C:0.27, G:0.19, T:0.37
Consensus pattern (60 bp):
AGCTCCCTTAACTGTCCTCTCACTGTACATCTCATGTGTATCCATCTAGTGGGGTCTGGA
Found at i:105499968 original size:20 final size:19
Alignment explanation
Indices: 105499917--105499970 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
105499907 GGCCTGTTAG
*
105499917 AAAAAAACC-AGAAATTAA
1 AAAAAAACCAATAAATTAA
**
105499935 AAAAACAAAAAATAAATTAA
1 AAAAA-AACCAATAAATTAA
105499955 AATAAAAACCAATAAA
1 AA-AAAAACCAATAAA
105499971 AGTTCATCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 5 0.18
19 2 0.07
20 18 0.64
21 3 0.11
ACGTcount: A:0.76, C:0.09, G:0.02, T:0.13
Consensus pattern (19 bp):
AAAAAAACCAATAAATTAA
Found at i:105501427 original size:14 final size:14
Alignment explanation
Indices: 105501410--105501438 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
105501400 TTATATATAT
105501410 ATAATTCATGATAA
1 ATAATTCATGATAA
105501424 ATAATTCATGATAA
1 ATAATTCATGATAA
105501438 A
1 A
105501439 GTTAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (14 bp):
ATAATTCATGATAA
Found at i:105510284 original size:44 final size:44
Alignment explanation
Indices: 105510224--105510678 Score: 339
Period size: 44 Copynumber: 10.1 Consensus size: 44
105510214 TTGAATATAG
* * *
105510224 CAAATTTTATCT-CCTGAAGATGCAGTGGAGC-GAAATAAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTAAAGCTA
* * * * * *
105510267 CAAATCTCATATCCCTGAAGTTGTAGTAGATCGGATTAAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * *
105510311 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * *
105510355 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTTAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
*
105510399 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* *
105510443 CAAATCTTATCTCGCTGAAGTTGCAGTGGAGTAGATTGAAA--TGA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCT-A
* * * * * * *
105510487 CAAATCATATATCACTGAAGTTGCAATGG-GTTAAATTAAATCTACCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTAAAGCT---A
* * * *
105510534 CAGCGAATCTTATTTTCCTGAAGTTGCAGTGAAACAGATTAAAGCTACAAGTTA
1 CA---AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG---C----TA
* * ** *
105510588 CAAATCTTATCTACTTGAAGTTATAGTGGAGCAGATTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * * * *
105510632 CGAATCTCATCTCCTTGAAGTTACAGCGGAGTC-GATTGAAA-CTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATT-AAAGCTA
105510676 CAA
1 CAA
105510679 TTCCTATACC
Statistics
Matches: 332, Mismatches: 58, Indels: 43
0.77 0.13 0.10
Matches are distributed among these distances:
43 14 0.04
44 243 0.73
45 7 0.02
47 3 0.01
48 1 0.00
50 28 0.08
51 31 0.09
53 1 0.00
54 3 0.01
57 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
Found at i:105510441 original size:132 final size:131
Alignment explanation
Indices: 105510224--105510697 Score: 378
Period size: 132 Copynumber: 3.5 Consensus size: 131
105510214 TTGAATATAG
* * * * *
105510224 CAAATTTTATCTCCTGAAGATGCAGTGGAG-CGAAATAAAGCTACAAATCTCATATCCCTGAAGT
1 CAAATCTTATCTCCTGAAGTTGCAGTGGAGTAG-ATTAAAGCTACAAATCTTATATCCCTGAAGT
* * * * * *
105510288 TGTAGTAGATCGGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAAC
65 TGCAGTGGAACAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAAC
105510353 AA
130 AA
* *
105510355 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTTAAGCTACAAATCTTATCTCCCTGAAGT
1 CAAATCTTATCTCC-TGAAGTTGCAGTGGAGTAGATTAAAGCTACAAATCTTATATCCCTGAAGT
* * * * *
105510420 TGCAGTGGAGCAGATTGAAGCTACAAATCTTATCTCGCTGAAGTTGCAGTGGAGTAGATTGAAAT
65 TGCAGTGGAACAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAAC
*
105510485 GA
130 AA
* * * * * * *
105510487 CAAATCATATATCACTGAAGTTGCAATGG-GTTAAATTAAATCTACCACAGCGAATCTTATTTTC
1 CAAATCTTATCTC-CTGAAGTTGCAGTGGAG-TAGATTAAAGCT---ACA---AATCTTATATCC
* * * * *
105510551 CTGAAGTTGCAGTGAAACAGATTAAAGCTACAAGTTACAAATCTTATCTACTTGAAGTTATAGTG
58 CTGAAGTTGCAGTGGAACAGATT---G----AAGCTACAAATCTTATCTCCCTGAAGTTGTAGTG
* *
105510616 GAGCAGATTGAAGCTA
116 GAGCAGATTGAAACAA
* * * * * * * * *
105510632 CGAATCTCATCTCCTTGAAGTTACAGCGGAGTCGATTGAAA-CTACAATTCCTATACCCCTAAAG
1 CAAATCTTATCTCC-TGAAGTTGCAGTGGAGTAGATT-AAAGCTACAAATCTTATATCCCTGAAG
105510696 TT
64 TT
105510698 ATAATGGGTT
Statistics
Matches: 270, Mismatches: 53, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
131 14 0.05
132 131 0.49
133 2 0.01
135 3 0.01
138 31 0.11
139 14 0.05
141 1 0.00
142 3 0.01
144 1 0.00
145 66 0.24
146 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (131 bp):
CAAATCTTATCTCCTGAAGTTGCAGTGGAGTAGATTAAAGCTACAAATCTTATATCCCTGAAGTT
GCAGTGGAACAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAACA
A
Found at i:105514179 original size:5 final size:6
Alignment explanation
Indices: 105514148--105514185 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
105514138 AAATTATATT
105514148 TTAAAA TTAAAA TTAAAA TTAAAA TT-AAA TT-AAA TTAA
1 TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAA
105514186 TTATTTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 10 0.32
6 21 0.68
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (6 bp):
TTAAAA
Found at i:105517205 original size:23 final size:23
Alignment explanation
Indices: 105517179--105517226 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
105517169 AAAACTTAAT
105517179 AATAATTGTTGATAAAGTGATAA
1 AATAATTGTTGATAAAGTGATAA
* * * *
105517202 AATATTTGTTTATAAATTTATAA
1 AATAATTGTTGATAAAGTGATAA
105517225 AA
1 AA
105517227 CACGTGCTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (23 bp):
AATAATTGTTGATAAAGTGATAA
Found at i:105517829 original size:20 final size:18
Alignment explanation
Indices: 105517787--105517841 Score: 67
Period size: 20 Copynumber: 3.0 Consensus size: 18
105517777 TTTATTTGTC
**
105517787 AAAATTAT-AAATTTATT
1 AAAATTATAAAATTTAAA
105517804 AAAATTATCAAAATGTTAAA
1 AAAATTAT-AAAAT-TTAAA
105517824 AAAATTATAAAATTTAAA
1 AAAATTATAAAATTTAAA
105517842 CTATCAAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 8 0.24
18 5 0.15
19 9 0.27
20 11 0.33
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
AAAATTATAAAATTTAAA
Found at i:105517835 original size:8 final size:8
Alignment explanation
Indices: 105517787--105517874 Score: 54
Period size: 8 Copynumber: 10.5 Consensus size: 8
105517777 TTTATTTGTC
105517787 AAAATTAT
1 AAAATTAT
*
105517795 AAATTTATT
1 AAAATTA-T
105517804 AAAATTAT
1 AAAATTAT
*
105517812 CAAAATGTTAAA
1 -AAAA--TT-AT
105517824 AAAATTAT
1 AAAATTAT
105517832 AAAATT-T
1 AAAATTAT
*
105517839 -AAACTAT
1 AAAATTAT
*
105517846 CAAACTTAT
1 -AAAATTAT
*
105517855 AAAATTAG
1 AAAATTAT
*
105517863 AAAATAAT
1 AAAATTAT
105517871 AAAA
1 AAAA
105517875 ATATTTAATT
Statistics
Matches: 61, Mismatches: 11, Indels: 16
0.69 0.12 0.18
Matches are distributed among these distances:
6 4 0.07
7 2 0.03
8 30 0.49
9 18 0.30
11 6 0.10
12 1 0.02
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (8 bp):
AAAATTAT
Found at i:105524270 original size:3 final size:3
Alignment explanation
Indices: 105524243--105524284 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
105524233 AAGAAAGGGG
*
105524243 GAA GGA GAA G-A GAGA GAA G-A GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GA-A GAA GAA GAA GAA GAA GAA GAA GAA GAA G
105524285 GAGGAGGCGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 4 0.12
3 27 0.79
4 3 0.09
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:105525154 original size:19 final size:19
Alignment explanation
Indices: 105525130--105525187 Score: 71
Period size: 20 Copynumber: 3.0 Consensus size: 19
105525120 ACATATTTTT
*
105525130 ACTAAATTAATATAAAAAA
1 ACTAAAATAATATAAAAAA
* * *
105525149 ACTAAAATAATACATGAAAT
1 ACTAAAATAATATA-AAAAA
105525169 ACTAAAATAATATAAAAAA
1 ACTAAAATAATATAAAAAA
105525188 CAAAATACGA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (19 bp):
ACTAAAATAATATAAAAAA
Found at i:105525158 original size:143 final size:142
Alignment explanation
Indices: 105524796--105526092 Score: 1683
Period size: 146 Copynumber: 9.1 Consensus size: 142
105524786 TATATTTTAA
* * * * *
105524796 AAAATCCAAAAATAAAATAAAAAAAGGCCAAAATTAGAGTTTTTTATTAAATTAATATAAATATA
1 AAAATCCGAAAATAAAATAAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAA
105524861 CTAAAATAATACATATGAAACATTATGTACTAAAATAATA-AAAAAATAAAATACGAAAATAGTA
66 CTAAAATAATACAT-TGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTA
*
105524925 TATTTTGAAAAAT
130 TATTTTAAAAAAT
*
105524938 AAAATCCGAAAATAAAATAAAAAATAAACGGCCAAAATCAGAATTTTTTACTAAATTAATATAAA
1 AAAATCCGAAAATAAAAT--AAAA-AAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAA
*
105525003 AAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACAAAAA
62 AAAACTAAAATAATACA-TTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAAA
105525068 TAGTATATTTTAAAAAAT
125 TAGTATATTTTAAAAAAT
* *
105525086 AAAATCCGAAAACAAAATAAAAAAA-GCCAAAATCACA-TATTTTTACTAAATTAATATAAAAAA
1 AAAATCCGAAAATAAAATAAAAAAAGGCCAAAATCAGAGT-TTTTTACTAAATTAATATAAAAAA
*
105525149 ACTAAAATAATACA-TG--A-A--A--TACTAAAATAATATAAAAAACAAAATACG---A-A-TA
65 ACTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTA
*
105525201 TATCTTAAAAAAT
130 TATTTTAAAAAAT
* *
105525214 AAAATCCGAAAATAAAA-ATAAAAAGGGCCAAAATCAGAGTTTTTT-TTAAATTAATAT-AAAAA
1 AAAATCCGAAAATAAAATA-AAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAA
* *
105525276 ACTAAAATAATACA-TGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACAAAAATAAT
65 ACTAAAATAATACATTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAAATAGT
*
105525340 AAATTTTAAAAAAT
129 ATATTTTAAAAAAT
* * *
105525354 AAAATCTGAAAATAAAA-ATAAAAAATGCCAAAATCAGAGTTTTTTTCTAAATTAATATAAAAAA
1 AAAATCCGAAAATAAAATA-AAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAA
* *
105525418 A-TAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAATAAAATACCAAAAGAG
65 ACTAAAATAATACA-TTGAAACATTATGTACTAAAATAATATAAAA-AATAAAATACGAAAATAG
105525482 TATATTTTAAAAAAT
128 TATATTTTAAAAAAT
* * * *
105525497 AAAATCTGAAAACAAAATAAATAAAACGGCCAAAATCACAGATTTTTACTAAATTAATATAAAAA
1 AAAATCCGAAAATAAAATAAA-AAAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATAT-AAAA
*
105525562 AAACTAAAATAATACA-TGAAACATTATGTACTAAAATAATATAAAAAATAAAATATGAAAATAG
63 AAACTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAG
105525626 TATATTTT-AAAAA-
128 TATATTTTAAAAAAT
*
105525639 AAAATCC-AAAAGTAAAA-AATAAAAAGGGCC-AAATCAGAGTTTTTTTTCTAAATTAATAT-AA
1 AAAATCCGAAAA-TAAAATAA-AAAAA-GGCCAAAATCAGAG-TTTTTTACTAAATTAATATAAA
* *
105525700 AAAACTAAAATAATACA-TGAAACATTATGTACTAAAATAATATAAAAAACAAAATATGAAAATA
62 AAAACTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATA
*
105525764 GTATATATTAAAAAAT
127 GTATATTTTAAAAAAT
*
105525780 AAAATCCGAAAATAAAATAAAAAATAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATAT-AA
1 AAAATCCGAAAATAAAAT--AAAA-AAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAA
* *
105525844 AAAACTAAAATAATACATTTAGAATATTATGTACTAAAATAATAT-AAAAATAAAATACGAAAAT
62 AAAACTAAAATAATACATTGA-AACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAAT
*
105525908 AGTATATTTTAAAAAGT
126 AGTATATTTTAAAAAAT
* * *
105525925 AAAATCCAAAAATAAAATAAAAAAACAAACGGTCAAAATC-GAAGTTTTTTATTAAATTAATA-A
1 AAAATCCGAAAATAAAAT---AAAA-AAA-GGCCAAAATCAG-AGTTTTTTACTAAATTAATATA
* *
105525988 AAAAATACAAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAATAAAAAACGAA
60 AAAAA-ACTAAAATAATACA-TTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAA
*
105526052 AATAATATATTTTAAAAAAT
123 AATAGTATATTTTAAAAAAT
105526072 AAAATCCGAAAATAAAATAAA
1 AAAATCCGAAAATAAAATAAA
105526093 TACCAAAATA
Statistics
Matches: 1039, Mismatches: 64, Indels: 102
0.86 0.05 0.08
Matches are distributed among these distances:
127 22 0.02
128 46 0.04
129 18 0.02
130 3 0.00
132 1 0.00
133 13 0.01
134 28 0.03
135 13 0.01
136 1 0.00
138 2 0.00
139 75 0.07
140 68 0.07
141 68 0.07
142 43 0.04
143 129 0.12
144 80 0.08
145 126 0.12
146 150 0.14
147 98 0.09
148 55 0.05
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.27
Consensus pattern (142 bp):
AAAATCCGAAAATAAAATAAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAA
CTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTAT
ATTTTAAAAAAT
Found at i:105525324 original size:13 final size:13
Alignment explanation
Indices: 105525306--105525340 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
105525296 ATTATGTACT
105525306 AAAATAATATAAA
1 AAAATAATATAAA
* *
105525319 AAAATAAAATACA
1 AAAATAATATAAA
105525332 AAAATAATA
1 AAAATAATA
105525341 AATTTTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAATAATATAAA
Found at i:105525876 original size:285 final size:285
Alignment explanation
Indices: 105524781--105526092 Score: 1676
Period size: 285 Copynumber: 4.6 Consensus size: 285
105524771 AGAATAGCTT
* *
105524781 AATAGTATATTTT---AA-AAAATCCAAAA-ATAAAATAAAAAAAGGCCAAAATTAGAGTTTTTT
1 AATAGTATATTTTAAAAATAAAATCCAAAATAAAAAAT-AAAAAAGGCCAAAATCAGAGTTTTTT
* *
105524841 AT-TAAATTAATATAAATATACTAAAATAATACATATGAAACATTATGTACTAAAATAATA-AAA
65 TTCTAAATTAATATAAA-AAACTAAAATAATAC--ATGAAACATTATGTACTAAAATAATATAAA
* *
105524904 AAATAAAATACGAAAATAGTATATTTTGAAAAATAAAATCCGAAAATAAAATAAAAAATAAACGG
127 AAACAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAA-AAACGG
*
105524969 CCAAAATCAGAATTTTTTACTAAATTAATATAAAAAAACTAAAATAATACATTTGAAACATTATG
191 CCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAAATAATACA--TGAAACATTATG
105525034 TACTAAAATAATATAAAAAAATAAAATACAAA
254 TACTAAAATAATATAAAAAAATAAAATACAAA
* * * * *
105525066 AATAGTATATTTTAAAAAATAAAATCCGAAA-ACAAAATAAAAAAAGCCAAAATCACA-TATTTT
1 AATAGTATATTTT-AAAAATAAAATCCAAAATAAAAAATAAAAAAGGCCAAAATCAGAGTTTTTT
*
105525129 TACTAAATTAATATAAAAAAACTAAAATAATACATG--A-A--A--TACTAAAATAATATAAAAA
65 TTCTAAATTAATAT-AAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAA
* * *
105525187 ACAAAATACG---A-A-TATATCTTAAAAAATAAAATCCGAAAAT--AA-AAATAAAAAGGGCCA
129 ACAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAAACGGCCA
*
105525244 AAATCAGAGTTTTTT-TTAAATTAATAT-AAAAAACTAAAATAATACATGAAACATTATGTACTA
194 AAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAAATAATACATGAAACATTATGTACTA
105525307 AAATAATATAAAAAAATAAAATACAAA
259 AAATAATATAAAAAAATAAAATACAAA
* * * *
105525334 AATAATAAATTTTAAAAAATAAAATCTGAAAAT-AAAAATAAAAAATGCCAAAATCAGAG-TTTT
1 AATAGTATATTTT-AAAAATAAAATC-CAAAATAAAAAATAAAAAAGGCCAAAATCAGAGTTTTT
*
105525397 TTTCTAAATTAATATAAAAAAATAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAA
64 TTTCTAAATTAATATAAAAAACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAA
* * * * * *
105525462 AGAATAAAATACCAAAAGAGTATATTTTAAAAAATAAAATCTGAAAACAAAAT-AAATAAAACGG
127 A-AACAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAAACGG
* *
105525526 CCAAAATCACAGATTTTTACTAAATTAATATAAAAAAAACTAAAATAATACATGAAACATTATGT
191 CCAAAATCAGAGTTTTTTACTAAATTAATAT-AAAAAAACTAAAATAATACATGAAACATTATGT
**
105525591 ACTAAAATAATAT-AAAAAATAAAATATGAA
255 ACTAAAATAATATAAAAAAATAAAATACAAA
*
105525621 AATAGTATATTTTAAAAA-AAAATCCAAAAGTAAAAAATAAAAAGGGCC-AAATCAGAGTTTTTT
1 AATAGTATATTTTAAAAATAAAATCCAAAA-TAAAAAATAAAAAAGGCCAAAATCAGAGTTTTTT
105525684 TTCTAAATTAATATAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAA
65 TTCTAAATTAATATAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAA
* *
105525749 CAAAATATGAAAATAGTATATATTAAAAAATAAAATCCGAAAATAAAATAAAAAATAAACGGCCA
130 CAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAA-AAACGGCCA
* * *
105525814 AAATCAGAGTTTTTTATTAAATTAATAT-AAAAAACTAAAATAATACATTTAGAATATTATGTAC
194 AAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAAATAATACA-TGA-AACATTATGTAC
*
105525878 TAAAATAATAT--AAAAATAAAATACGAA
257 TAAAATAATATAAAAAAATAAAATACAAA
* *
105525905 AATAGTATATTTTAAAAAGTAAAATCCAAAAATAAAATAAAAAAACAAACGGTCAAAATC-GAAG
1 AATAGTATATTTTAAAAA-TAAAATCC-AAAAT-AAA-AAATAAA-AAA-GGCCAAAATCAG-AG
* * *
105525969 TTTTTTAT-TAAATTAATAAAAAAATACAAAAATAATACATTTGAAACATTATGTACTAAAATAA
59 TTTTTTTTCTAAATTAATATAAAAA-ACTAAAATAATACA--TGAAACATTATGTACTAAAATAA
*
105526033 TATAAAAATA-AAAA-ACGAAAATAATATATTTTAAAAAATAAAATCCGAAAATAAAATAAA
121 TATAAAAA-ACAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAA
105526093 TACCAAAATA
Statistics
Matches: 907, Mismatches: 68, Indels: 97
0.85 0.06 0.09
Matches are distributed among these distances:
268 86 0.09
269 42 0.05
270 21 0.02
271 11 0.01
272 23 0.03
273 6 0.01
274 2 0.00
275 1 0.00
276 26 0.03
277 19 0.02
278 10 0.01
280 13 0.01
281 15 0.02
282 2 0.00
283 88 0.10
284 74 0.08
285 112 0.12
286 75 0.08
287 36 0.04
288 56 0.06
289 45 0.05
290 38 0.04
291 27 0.03
292 43 0.05
293 35 0.04
294 1 0.00
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.27
Consensus pattern (285 bp):
AATAGTATATTTTAAAAATAAAATCCAAAATAAAAAATAAAAAAGGCCAAAATCAGAGTTTTTTT
TCTAAATTAATATAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAC
AAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAAACGGCCAAA
ATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAAATAATACATGAAACATTATGTACTAAA
ATAATATAAAAAAATAAAATACAAA
Found at i:105532492 original size:22 final size:22
Alignment explanation
Indices: 105532466--105532507 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
105532456 TAAATTACCT
105532466 TTTCTTTTCTTTCT-TCTTCTCC
1 TTTC-TTTCTTTCTATCTTCTCC
105532488 TTTCTTTCTTTCTATCTTCT
1 TTTCTTTCTTTCTATCTTCT
105532508 TCTTCTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTCTTTCTTTCTATCTTCTCC
Found at i:105536093 original size:43 final size:43
Alignment explanation
Indices: 105536031--105536118 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
105536021 AAATCTCAAC
* *
105536031 TTTAAAATTAACCTGAACGACAACGTTTCCTAACTTTGACTAA
1 TTTAAAATTAACCTAAACGACAACGTTTCCTAACTTAGACTAA
* *
105536074 TTTAAAATTAATCTAAACGACAACGTTTCGTAACTTAGACTAA
1 TTTAAAATTAACCTAAACGACAACGTTTCCTAACTTAGACTAA
105536117 TT
1 TT
105536119 GACTTGGAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (43 bp):
TTTAAAATTAACCTAAACGACAACGTTTCCTAACTTAGACTAA
Found at i:105536427 original size:16 final size:17
Alignment explanation
Indices: 105536396--105536429 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
105536386 TCTCCACCCA
*
105536396 CCTCAACTCTCCTCCTC
1 CCTCAAATCTCCTCCTC
105536413 CCTCAAATC-CCTCCTC
1 CCTCAAATCTCCTCCTC
105536429 C
1 C
105536430 TTTCCCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.15, C:0.59, G:0.00, T:0.26
Consensus pattern (17 bp):
CCTCAAATCTCCTCCTC
Found at i:105540190 original size:92 final size:92
Alignment explanation
Indices: 105540056--105540239 Score: 368
Period size: 92 Copynumber: 2.0 Consensus size: 92
105540046 AGAGGGTATC
105540056 ATAGAAAATGATGTTAGGTAAGCTGCGTGGTCCTTTTCTTTTTTCGGCATTTCATAGATCTTTCT
1 ATAGAAAATGATGTTAGGTAAGCTGCGTGGTCCTTTTCTTTTTTCGGCATTTCATAGATCTTTCT
105540121 TCCAGTGTAAGAAGTAATTCACCTATG
66 TCCAGTGTAAGAAGTAATTCACCTATG
105540148 ATAGAAAATGATGTTAGGTAAGCTGCGTGGTCCTTTTCTTTTTTCGGCATTTCATAGATCTTTCT
1 ATAGAAAATGATGTTAGGTAAGCTGCGTGGTCCTTTTCTTTTTTCGGCATTTCATAGATCTTTCT
105540213 TCCAGTGTAAGAAGTAATTCACCTATG
66 TCCAGTGTAAGAAGTAATTCACCTATG
105540240 TTACAGAGCT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (92 bp):
ATAGAAAATGATGTTAGGTAAGCTGCGTGGTCCTTTTCTTTTTTCGGCATTTCATAGATCTTTCT
TCCAGTGTAAGAAGTAATTCACCTATG
Found at i:105540921 original size:35 final size:35
Alignment explanation
Indices: 105540875--105540956 Score: 128
Period size: 35 Copynumber: 2.3 Consensus size: 35
105540865 GTATAAAAGT
* *
105540875 TATTTGAACCATTAAAACTTTTTAAGAAATCAGGG
1 TATTTAAACCATTAAAACTTTTTAAGAAATCAAGG
* *
105540910 TATTTAAACCATTGAAACTTTTTAAGAAATCAAGT
1 TATTTAAACCATTAAAACTTTTTAAGAAATCAAGG
105540945 TATTTAAACCAT
1 TATTTAAACCAT
105540957 GAGAATATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (35 bp):
TATTTAAACCATTAAAACTTTTTAAGAAATCAAGG
Found at i:105542793 original size:9 final size:9
Alignment explanation
Indices: 105542779--105542813 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
105542769 ACACCAAGAA
105542779 GACTCAAGG
1 GACTCAAGG
105542788 GACTCAAGG
1 GACTCAAGG
105542797 GACTCAAGG
1 GACTCAAGG
105542806 GACTCAAG
1 GACTCAAG
105542814 AGTTAATTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.31, T:0.11
Consensus pattern (9 bp):
GACTCAAGG
Found at i:105553351 original size:30 final size:29
Alignment explanation
Indices: 105553317--105553390 Score: 87
Period size: 28 Copynumber: 2.5 Consensus size: 29
105553307 CACGTGTAAT
*
105553317 CCACACACCCATGTGTAACACACGGGTAGG
1 CCACACGCCC-TGTGTAACACACGGGTAGG
* * *
105553347 CCACACGCCC-GTGTGACATACGGGTATG
1 CCACACGCCCTGTGTAACACACGGGTAGG
105553375 CCACACGCCCGTGTGT
1 CCACACGCCC-TGTGT
105553391 CATGGCTGTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 25 0.66
30 13 0.34
ACGTcount: A:0.23, C:0.35, G:0.26, T:0.16
Consensus pattern (29 bp):
CCACACGCCCTGTGTAACACACGGGTAGG
Found at i:105553389 original size:28 final size:28
Alignment explanation
Indices: 105553329--105553389 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
105553319 ACACACCCAT
*
105553329 GTGTAACACACGGGTAGGCCACACGCCC
1 GTGTGACACACGGGTAGGCCACACGCCC
* *
105553357 GTGTGACATACGGGTATGCCACACGCCC
1 GTGTGACACACGGGTAGGCCACACGCCC
105553385 GTGTG
1 GTGTG
105553390 TCATGGCTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.16
Consensus pattern (28 bp):
GTGTGACACACGGGTAGGCCACACGCCC
Found at i:105561063 original size:37 final size:40
Alignment explanation
Indices: 105560991--105561064 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
105560981 TCCTTCCCCT
105560991 TTCTTTTCCTTTTCTCTTCTTTCCTCCTTCTCCCTCTCTG
1 TTCTTTTCCTTTTCTCTTCTTTCCTCCTTCTCCCTCTCTG
** *
105561031 TTCTTTTTTTTTTCTCTT-TTT-CTCTTTC-CCCTCT
1 TTCTTTTCCTTTTCTCTTCTTTCCTCCTTCTCCCTCT
105561065 GACTACCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 6 0.19
38 6 0.19
39 3 0.10
40 16 0.52
ACGTcount: A:0.00, C:0.35, G:0.01, T:0.64
Consensus pattern (40 bp):
TTCTTTTCCTTTTCTCTTCTTTCCTCCTTCTCCCTCTCTG
Found at i:105568752 original size:6 final size:6
Alignment explanation
Indices: 105568741--105568777 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
105568731 AAGCAGAGTG
105568741 GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA G
1 GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA G
105568778 CCACTTAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.16
Consensus pattern (6 bp):
GGCTCA
Found at i:105574247 original size:2 final size:2
Alignment explanation
Indices: 105574242--105574276 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
105574232 ATATATATAT
105574242 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
105574277 AGCATGTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:105575367 original size:48 final size:48
Alignment explanation
Indices: 105575288--105575381 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
105575278 AGTGAATTCT
* *
105575288 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
105575336 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
105575382 AGCTAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:105577882 original size:48 final size:48
Alignment explanation
Indices: 105577803--105577896 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
105577793 AGGGAATTCT
* *
105577803 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
105577851 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
105577897 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:105587994 original size:64 final size:65
Alignment explanation
Indices: 105587887--105588050 Score: 298
Period size: 64 Copynumber: 2.6 Consensus size: 65
105587877 TGAGCTTATA
105587887 TAATTTATATAACAAAATTTATATTACAAAGTTTG-TTCAAATTAGATTAATGTTGTAATGTATT
1 TAATTTATATAACAAAATTTATATTACAAAGTTTGTTTCAAATTAGATTAATGTTGTAATGTATT
105587951 TAATTTATATAACAAAATTTATATTACAAAGTTTGTTTC-AATTAGATTAATGTTGTAATGTATT
1 TAATTTATATAACAAAATTTATATTACAAAGTTTGTTTCAAATTAGATTAATGTTGTAATGTATT
*
105588015 TAATTT-TATTACAAAATTTATATTACAAAGTTTGTT
1 TAATTTATATAACAAAATTTATATTACAAAGTTTGTT
105588051 CCACGTTTTA
Statistics
Matches: 98, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
63 29 0.30
64 66 0.67
65 3 0.03
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (65 bp):
TAATTTATATAACAAAATTTATATTACAAAGTTTGTTTCAAATTAGATTAATGTTGTAATGTATT
Found at i:105588385 original size:33 final size:34
Alignment explanation
Indices: 105588334--105588424 Score: 96
Period size: 33 Copynumber: 2.7 Consensus size: 34
105588324 CGATGAACTT
* * *
105588334 GAGCTGGGTGGAGTGCCATACTGCGGTAGATA-G
1 GAGCCGGGAGGAGTGCCATACTGAGGTAGATATG
* *
105588367 GAGCCGGGAGGAGTGCCATATTGAGGTGGATATG
1 GAGCCGGGAGGAGTGCCATACTGAGGTAGATATG
* **
105588401 G-GTCGGGAGGAGTGCTGTACTGAG
1 GAGCCGGGAGGAGTGCCATACTGAG
105588425 CTGGATACGA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
33 46 0.96
34 2 0.04
ACGTcount: A:0.21, C:0.13, G:0.45, T:0.21
Consensus pattern (34 bp):
GAGCCGGGAGGAGTGCCATACTGAGGTAGATATG
Found at i:105589248 original size:14 final size:14
Alignment explanation
Indices: 105589228--105589262 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
105589218 CAAATTACAT
105589228 ATTAGAATAGGATC
1 ATTAGAATAGGATC
* *
105589242 GTTAGAATAGTATC
1 ATTAGAATAGGATC
105589256 ATTAGAA
1 ATTAGAA
105589263 AAAAAATCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (14 bp):
ATTAGAATAGGATC
Found at i:105589948 original size:21 final size:17
Alignment explanation
Indices: 105589889--105589938 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
105589879 TGTAAACATG
* *
105589889 TATTTAATTATTAATAGA
1 TATTT-ATTATTAAAAAA
105589907 TATTTATTATTAAAAAA
1 TATTTATTATTAAAAAA
105589924 TATTTATTAATTAAA
1 TATTTATT-ATTAAA
105589939 TAATTATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 18 0.62
18 11 0.38
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (17 bp):
TATTTATTATTAAAAAA
Found at i:105590086 original size:11 final size:12
Alignment explanation
Indices: 105590056--105590089 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
105590046 GTATGTTTAC
105590056 TTATTATATAAG
1 TTATTATATAAG
105590068 TATATTAT-TAAG
1 T-TATTATATAAG
105590080 TTATTATATA
1 TTATTATATA
105590090 TATATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (12 bp):
TTATTATATAAG
Found at i:105590193 original size:18 final size:19
Alignment explanation
Indices: 105590158--105590198 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
105590148 AATAGCAAAC
*
105590158 GGGAAAAGAATGAAGAAAA
1 GGGAAAAGAATAAAGAAAA
105590177 GGGAAAAGAA-AAAGAAAA
1 GGGAAAAGAATAAAGAAAA
105590195 GGGA
1 GGGA
105590199 GAATTAGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.63, C:0.00, G:0.34, T:0.02
Consensus pattern (19 bp):
GGGAAAAGAATAAAGAAAA
Found at i:105591299 original size:6 final size:6
Alignment explanation
Indices: 105591275--105591327 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
105591265 CTATGTACCG
* * * * *
105591275 TACTGC TACTAT TATTGT TACTGT TACTGT TACTGT TACCGT TACCGT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT
105591323 TACTG
1 TACTG
105591328 ACGTAGTGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:105593837 original size:119 final size:119
Alignment explanation
Indices: 105593709--105593945 Score: 379
Period size: 119 Copynumber: 2.0 Consensus size: 119
105593699 AAAATAAAAA
* * *
105593709 TTTTATATTAAAATATTAAAAATAATATGCCAATAAAAAATATAAAATAAAGAACATAACATAAA
1 TTTTATATTAAAATACTAAAAATAACATGCCAATAAAAAA-ATAAAACAAA-AACATAACATAAA
*
105593774 CGATACATAATAAATA-TAA-ATATTATTATTATTTTAAAATGATAATAAGTAAAT
64 CGATACATAATAAATACGAATATATTATTATTATTTTAAAATGATAATAAGTAAAT
* *
105593828 TTTTATATTAAAATACTAAAAATAACATGCCAATAAAAAAATATAACAAAAACATAACATAAATG
1 TTTTATATTAAAATACTAAAAATAACATGCCAATAAAAAAATAAAACAAAAACATAACATAAACG
*
105593893 ATACATAATAAATACGAATATTTTATTATTATTTTAAAATGATAATAAGTAAA
66 ATACATAATAAATACGAATATATTATTATTATTTTAAAATGATAATAAGTAAA
105593946 CATTTTTGGT
Statistics
Matches: 109, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
117 28 0.26
118 10 0.09
119 71 0.65
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (119 bp):
TTTTATATTAAAATACTAAAAATAACATGCCAATAAAAAAATAAAACAAAAACATAACATAAACG
ATACATAATAAATACGAATATATTATTATTATTTTAAAATGATAATAAGTAAAT
Found at i:105594874 original size:5 final size:5
Alignment explanation
Indices: 105594864--105594888 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
105594854 CATGTCACCA
105594864 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
105594889 GTTTGCTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:105606559 original size:18 final size:18
Alignment explanation
Indices: 105606536--105606818 Score: 160
Period size: 18 Copynumber: 15.3 Consensus size: 18
105606526 AAATAATTAT
* *
105606536 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAA
*
105606554 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * * *
105606572 TTATTCAATAATAACCAG
1 TTATTCAGTAACAATCAA
** * *
105606590 TTATTTGGTATCGATCAA
1 TTATTCAGTAACAATCAA
*
105606608 TTGATCGGCTATCCAGTAACAGTCAA
1 TT-A-----T-TC-AGTAACAATCAA
105606634 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAATCA-A
* *
105606652 -TATTCAGTAACTATTAA
1 TTATTCAGTAACAATCAA
* *
105606669 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAATCAA
* *
105606687 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAATCAA
**
105606706 TTATTCAGTAATGATCAA
1 TTATTCAGTAACAATCAA
* * *
105606724 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAA
*
105606742 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAATC-AA
* *
105606761 -TATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
* *
105606778 TTATCCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* *
105606796 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAATCAA
105606814 TTATT
1 TTATT
105606819 TTATACCTTA
Statistics
Matches: 200, Mismatches: 49, Indels: 32
0.71 0.17 0.11
Matches are distributed among these distances:
17 19 0.09
18 150 0.75
19 17 0.09
20 1 0.00
24 1 0.00
25 2 0.01
26 10 0.05
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Done.