Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 318 of 362
Found at i:106079106 original size:27 final size:27
Alignment explanation
Indices: 106079019--106079117 Score: 96
Period size: 27 Copynumber: 3.6 Consensus size: 27
106079009 AAAGGTATAT
106079019 TTTCTTGTCCATAGTTTTGTGAATCGG
1 TTTCTTGTCCATAGTTTTGTGAATCGG
* * * *
106079046 TTTCTGGGT---TAGTTCCTTTATGTTATTGG
1 TTTCT-TGTCCATAG-T--TTTGTG-AATCGG
106079075 TTTCTTGTCCATAGTTTTGTGAATCGG
1 TTTCTTGTCCATAGTTTTGTGAATCGG
106079102 TTTCTTGTCCATAGTT
1 TTTCTTGTCCATAGTT
106079118 AGAAAGATTT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 25 0.45
28 14 0.25
29 9 0.16
30 1 0.02
31 3 0.05
ACGTcount: A:0.13, C:0.14, G:0.21, T:0.52
Consensus pattern (27 bp):
TTTCTTGTCCATAGTTTTGTGAATCGG
Found at i:106081213 original size:26 final size:26
Alignment explanation
Indices: 106081184--106081241 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
106081174 CATCCTCAAA
106081184 CTATAATCTAGATATTAAATTGGTCT
1 CTATAATCTAGATATTAAATTGGTCT
*
106081210 CTATAATCTAGATTTTAAATTGGTCT
1 CTATAATCTAGATATTAAATTGGTCT
106081236 CTATAA
1 CTATAA
106081242 ATTTTGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.43
Consensus pattern (26 bp):
CTATAATCTAGATATTAAATTGGTCT
Found at i:106081603 original size:20 final size:20
Alignment explanation
Indices: 106081578--106081617 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
106081568 AATATTTTCC
*
106081578 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
106081598 AGTAAAACATTTTTCAGAAA
1 AGTAAAACATTTTACAGAAA
106081618 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:106081619 original size:34 final size:34
Alignment explanation
Indices: 106081566--106081631 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
106081556 CAAACACCAA
*
106081566 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTAC-GAAAAGT
*
106081601 AAAACATTTTTCAG-AAATCATTTTACGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACGAAAA
106081632 ATATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.41
35 12 0.41
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACGAAAAGT
Found at i:106087129 original size:40 final size:39
Alignment explanation
Indices: 106087078--106087214 Score: 97
Period size: 40 Copynumber: 3.6 Consensus size: 39
106087068 TGGGCGCAAT
*
106087078 TATCGTTGGTTTATCCAACTAGGCCTAGGCTTACAATTAC
1 TATCGTCGGTTTATCCAACTAGGCCT-GGCTTACAATTAC
*** * *
106087118 TATCGTCGGTTTATTTGACTA-GCACTGG-GTGCAA--A-
1 TATCGTCGGTTTATCCAACTAGGC-CTGGCTTACAATTAC
* * * *
106087153 TATTGTTGGTTTATCCAACTAGAG-TTGGGCTCACAATTAC
1 TATCGTCGGTTTATCCAACTAG-GCCT-GGCTTACAATTAC
*
106087193 TATCGCCGGTTTATCCAACTAG
1 TATCGTCGGTTTATCCAACTAG
106087215 CACTGGGTGC
Statistics
Matches: 71, Mismatches: 18, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
35 17 0.24
36 3 0.04
37 4 0.06
38 4 0.06
39 5 0.07
40 38 0.54
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (39 bp):
TATCGTCGGTTTATCCAACTAGGCCTGGCTTACAATTAC
Found at i:106087174 original size:35 final size:35
Alignment explanation
Indices: 106087135--106087248 Score: 115
Period size: 35 Copynumber: 3.1 Consensus size: 35
106087125 GGTTTATTTG
106087135 ACTAGCACTGGGTGCAAATATTGTTGGTTTATCCA
1 ACTAGCACTGGGTGCAAATATTGTTGGTTTATCCA
* **
106087170 ACTAG-AGTTGGGCT-CACAATTACTATCGCCGGTTTATCCA
1 ACTAGCA-CTGGG-TGCA-AA-TA-T-T-GTTGGTTTATCCA
*
106087210 ACTAGCACTGGGTGCAAACATTGTTGGTTTATCCA
1 ACTAGCACTGGGTGCAAATATTGTTGGTTTATCCA
106087245 ACTA
1 ACTA
106087249 AAGCTAGGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
34 1 0.02
35 26 0.41
36 4 0.06
37 3 0.05
38 2 0.03
39 4 0.06
40 22 0.35
41 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (35 bp):
ACTAGCACTGGGTGCAAATATTGTTGGTTTATCCA
Found at i:106087189 original size:75 final size:75
Alignment explanation
Indices: 106087045--106087301 Score: 304
Period size: 75 Copynumber: 3.4 Consensus size: 75
106087035 TGGGCACACA
** * * *
106087045 ATCGCCGG-TTATCTGACTAGTGCTGGGCGCAATTATCGTTGGTTTATCCAACTAG-GCCTAGGC
1 ATCGCCGGTTTATCTGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAG-CTAGGC
*
106087108 TTACAATTACT
65 TCACAATTACT
* * * *
106087119 ATCGTCGGTTTATTTGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAGTTGGGCT
1 ATCGCCGGTTTATCTGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAGCTAGGCT
106087184 CACAATTACT
66 CACAATTACT
** * *
106087194 ATCGCCGGTTTATCCAACTAGCACTGGGTGCAAACATTGTTGGTTTATCCAACTAAAGCTAGGCT
1 ATCGCCGGTTTATCTGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAGCTAGGCT
*
106087259 CA-AATTCAAT
66 CACAATT-ACT
* * * *
106087269 ATTGCTGGTTAATCTGACTAGCGCTGGGTGCAA
1 ATCGCCGGTTTATCTGACTAGCACTGGGTGCAA
106087302 CCTTTTCTGC
Statistics
Matches: 155, Mismatches: 25, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
74 11 0.07
75 143 0.92
76 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (75 bp):
ATCGCCGGTTTATCTGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAGCTAGGCT
CACAATTACT
Found at i:106091913 original size:20 final size:22
Alignment explanation
Indices: 106091860--106091914 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
106091850 GATATATCAT
*
106091860 GTTATATGTTAGAATTGGCTTG
1 GTTATATGTTTGAATTGGCTTG
106091882 GTTATAATGTTTGAATTGGC-TG
1 GTTAT-ATGTTTGAATTGGCTTG
106091904 G-TATATGTTTG
1 GTTATATGTTTG
106091915 CAAGTATTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 7 0.23
21 3 0.10
22 8 0.26
23 13 0.42
ACGTcount: A:0.22, C:0.04, G:0.27, T:0.47
Consensus pattern (22 bp):
GTTATATGTTTGAATTGGCTTG
Found at i:106096922 original size:17 final size:18
Alignment explanation
Indices: 106096887--106096925 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
106096877 AATTAAACTT
106096887 TAAAATGTTAAAAATAAA
1 TAAAATGTTAAAAATAAA
106096905 TAAAAT-TTCAAAAA-AAA
1 TAAAATGTT-AAAAATAAA
106096922 TAAA
1 TAAA
106096926 TGGGTTCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (18 bp):
TAAAATGTTAAAAATAAA
Found at i:106098358 original size:16 final size:17
Alignment explanation
Indices: 106098334--106098367 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
106098324 TATCCATACG
*
106098334 ACATTTATACAA-ATTC
1 ACATATATACAACATTC
106098350 ACATATATACAACATTC
1 ACATATATACAACATTC
106098367 A
1 A
106098368 ATTCAAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (17 bp):
ACATATATACAACATTC
Found at i:106098539 original size:21 final size:21
Alignment explanation
Indices: 106098515--106098558 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
106098505 TAAATTTAGC
* *
106098515 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATTCACAT
*
106098536 TCAATTCAATTCAATTCACAT
1 TCAATTCAATACAATTCACAT
106098557 TC
1 TC
106098559 TAGGAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAATTCAATACAATTCACAT
Found at i:106098544 original size:5 final size:5
Alignment explanation
Indices: 106098515--106098558 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
106098505 TAAATTTAGC
* *
106098515 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCACAT TC
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA-AT TC
106098559 TAGGAAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
5 24 0.73
6 9 0.27
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:106098547 original size:16 final size:16
Alignment explanation
Indices: 106098526--106098558 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
106098516 CAATTTAATA
106098526 CAATTCATATTCA-ATT
1 CAATTCA-ATTCACATT
106098542 CAATTCAATTCACATT
1 CAATTCAATTCACATT
106098558 C
1 C
106098559 TAGGAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.39
Consensus pattern (16 bp):
CAATTCAATTCACATT
Found at i:106101186 original size:14 final size:15
Alignment explanation
Indices: 106101167--106101217 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 15
106101157 AATTTAGGTA
106101167 AAAAGAAGAATAG-G
1 AAAAGAAGAATAGAG
106101181 AAAAG-A-AATAGAG
1 AAAAGAAGAATAGAG
*
106101194 AAGAAGAAGAAAAGAAG
1 AA-AAGAAGAATAG-AG
106101211 AAAAGAA
1 AAAAGAA
106101218 AATGGAGGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
12 5 0.16
13 4 0.13
14 8 0.26
15 1 0.03
16 9 0.29
17 4 0.13
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (15 bp):
AAAAGAAGAATAGAG
Found at i:106101217 original size:22 final size:21
Alignment explanation
Indices: 106101166--106101217 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
106101156 AAATTTAGGT
* *
106101166 AAAAAGAAGAATAGGAAAAGA
1 AAAAAGAAGAAGAAGAAAAGA
*
106101187 AATAGAGAAGAAGAAGAAAAGA
1 AA-AAAGAAGAAGAAGAAAAGA
106101209 AGAAAAGAA
1 A-AAAAGAA
106101218 AATGGAGGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 2 0.08
22 22 0.88
23 1 0.04
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (21 bp):
AAAAAGAAGAAGAAGAAAAGA
Found at i:106103175 original size:15 final size:17
Alignment explanation
Indices: 106103155--106103186 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
106103145 TTAGGAAACG
106103155 TACATAA-A-AAATATA
1 TACATAATATAAATATA
106103170 TACATAATATAAATATA
1 TACATAATATAAATATA
106103187 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:106103737 original size:18 final size:18
Alignment explanation
Indices: 106103697--106103740 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
106103687 AAATCATTTT
*
106103697 GAAGAGAGAAAGAAAAAA
1 GAAGGGAGAAAGAAAAAA
* * *
106103715 AAAGGGAGAAAGAAGAGA
1 GAAGGGAGAAAGAAAAAA
106103733 GAAGGGAG
1 GAAGGGAG
106103741 GGGGGAAAGG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (18 bp):
GAAGGGAGAAAGAAAAAA
Found at i:106103814 original size:17 final size:18
Alignment explanation
Indices: 106103768--106103816 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
106103758 GCCAAGGGGG
* *
106103768 GCCGGTCACCGACCGATC
1 GCCGGCCACCGCCCGATC
* *
106103786 GTCGGCCGCCGCCCG-TC
1 GCCGGCCACCGCCCGATC
106103803 GCCGGCCACCGCCC
1 GCCGGCCACCGCCC
106103817 ACGGTGGTCG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.08, C:0.53, G:0.31, T:0.08
Consensus pattern (18 bp):
GCCGGCCACCGCCCGATC
Found at i:106105308 original size:126 final size:131
Alignment explanation
Indices: 106105097--106105351 Score: 358
Period size: 126 Copynumber: 2.0 Consensus size: 131
106105087 TCAACTCACC
*
106105097 TCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAG
1 TCTCGCAATATGAGTTGA-TATTTTGAAAGACAGAAATTGAAAATACCTCAGCA-GTGAACCGAG
*
106105162 GCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACCTCAAT
64 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAAT
106105225 GTG
129 GTG
* * * * **
106105228 TCTCGCAATATGAGTTGA-ATTTTGAAA-ACAGAATTTGAAATTACTTTAGC-GTGTCCCGAGGC
1 TCTCGCAATATGAGTTGATATTTTGAAAGACAGAAATTGAAAATACCTCAGCAGTGAACCGAGGC
* *
106105290 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGACAAAAATTGAAAATACCTCA
66 TCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCA
106105352 GCATGTCTTG
Statistics
Matches: 111, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
126 37 0.33
128 28 0.25
129 28 0.25
131 18 0.16
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (131 bp):
TCTCGCAATATGAGTTGATATTTTGAAAGACAGAAATTGAAAATACCTCAGCAGTGAACCGAGGC
TCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAATGT
G
Found at i:106105373 original size:76 final size:76
Alignment explanation
Indices: 106105228--106105718 Score: 326
Period size: 76 Copynumber: 6.3 Consensus size: 76
106105218 CCTCAATGTG
* * * * * * * *
106105228 TCTCGCAATATGAGTTGA----ATTTTGAAAACAGAATTTGAAATTACTTTAGCGTGTCCCGAGG
1 TCTCGCAATATGAGTTGATTTTTTTTTGAAAACAAAAATTGAAAATACCTCAGCATGTCCTGAGG
106105289 CTCAACTCACC
66 CTCAACTCACC
*
106105300 TCTCGCAATATGAGTTGATTTTTTTTT-AAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAG
1 TCTCGCAATATGAGTTGATTTTTTTTTGAAA-ACAAAAATTGAAAATACCTCAGCATGTCCTGAG
* **
106105364 GCTTAACTCATT
65 GCTCAACTCACC
* * * * *
106105376 TCTCGCAATATGAGTTGATTTTTTTTTTTGACAACAGAAATTGAAATTACCTTAGCGTGTCCTGA
1 TCTCGCAATATGAGTTGA--TTTTTTTTTGAAAACAAAAATTGAAAATACCTCAGCATGTCCTGA
106105441 GGCTCAACTCACC
64 GGCTCAACTCACC
* * * * ***
106105454 TCTCGCAATATGAGTTGAATTTTTTTTGAAAA-ATATAAATT-TAAA-A--GCAGAAATTGAAAT
1 TCTCGCAATATGAGTTGATTTTTTTTTGAAAACA-A-AAATTGAAAATACCTCAG-CA-TGTCCT
* * *
106105514 TA-ACTCAACGT-GCC
62 GAGGCTCAAC-TCACC
* * *
106105528 TTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACC
1 TCT----CGCAA--TA----T-G-AGT-TGA-TT-TTTTTTTGAAA-ACAAAAATTGAAAATACC
** **
106105593 TCAGCATGTTTTGAGGCTCAACTCATT
50 TCAGCATGTCCTGAGGCTCAACTCACC
* * * *
106105620 TCTCGCAATATGAGTTGA--TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
1 TCTCGCAATATGAGTTGATTTTTTTTTGAAAACAAAAATTGAAAATACCTCAGCATGTCCTGAGG
106105683 CTCAACTCACC
66 CTCAACTCACC
106105694 TCTCGCAATATGAGTTGATTTTTTT
1 TCTCGCAATATGAGTTGATTTTTTT
106105719 GAAAAATATA
Statistics
Matches: 319, Mismatches: 62, Indels: 72
0.70 0.14 0.16
Matches are distributed among these distances:
72 18 0.06
73 2 0.01
74 66 0.21
75 19 0.06
76 75 0.24
77 5 0.02
78 68 0.21
79 5 0.02
80 5 0.02
81 1 0.00
82 1 0.00
84 1 0.00
85 1 0.00
86 5 0.02
87 3 0.01
88 5 0.02
89 15 0.05
90 5 0.02
91 7 0.02
92 9 0.03
93 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (76 bp):
TCTCGCAATATGAGTTGATTTTTTTTTGAAAACAAAAATTGAAAATACCTCAGCATGTCCTGAGG
CTCAACTCACC
Found at i:106105626 original size:74 final size:74
Alignment explanation
Indices: 106105528--106105723 Score: 286
Period size: 74 Copynumber: 2.6 Consensus size: 74
106105518 TCAACGTGCC
* *
106105528 TTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA-TTTTTTGAAAGACAAAAATTGAAAATAC
1 TTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAAAAATTGAAAATAC
106105592 CTCAGCATGT
65 CTCAGCATGT
** * * *
106105602 TTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACC
1 TTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAAAAATTGAAAATACC
*
106105667 TCAGCGTGT
66 TCAGCATGT
**
106105676 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
1 TTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
106105724 ATATAAATTT
Statistics
Matches: 108, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
74 99 0.92
75 9 0.08
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (74 bp):
TTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAAAAATTGAAAATACC
TCAGCATGT
Found at i:106105797 original size:163 final size:163
Alignment explanation
Indices: 106105579--106105885 Score: 454
Period size: 163 Copynumber: 1.9 Consensus size: 163
106105569 TGAAAGACAA
* ** ** *
106105579 AAATTGAAAATACCTCAGCATGTTTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTT
* * * *
106105644 TGACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
65 TGAAAGACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
106105708 TTGATTTTTTTGAAAAATATAAATTTAAAAGCAG
130 TTGATTTTTTTGAAAAATATAAATTTAAAAGCAG
* * * *
106105742 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCACAGTATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
* *
106105807 GAAAGACAAAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
66 GAAAGACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
106105872 TGATTTTTTTGAAA
131 TGATTTTTTTGAAA
106105886 CAGAAATAAA
Statistics
Matches: 127, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
162 9 0.07
163 118 0.93
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (163 bp):
AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
GAAAGACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAAAATATAAATTTAAAAGCAG
Found at i:106105831 original size:74 final size:75
Alignment explanation
Indices: 106105742--106105885 Score: 227
Period size: 74 Copynumber: 1.9 Consensus size: 75
106105732 TTAAAAGCAG
* * *
106105742 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCACAGTATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
106105806 TGAAAGACAA
66 TGAAAGACAA
* * *
106105816 AAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
106105881 TGAAA
66 TGAAA
106105886 CAGAAATAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
74 53 0.84
75 10 0.16
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (75 bp):
AAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
TGAAAGACAA
Found at i:106105846 original size:237 final size:240
Alignment explanation
Indices: 106105285--106105892 Score: 994
Period size: 237 Copynumber: 2.5 Consensus size: 240
106105275 AGCGTGTCCC
* * *
106105285 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGACAAAAATTGAAAATACCT
1 GAGGCTCAACTTACCTCTCGCAGTATGAGTTGA--TTTTTTGAAAGACAAAAATTGAAAATACCT
*** *
106105350 CAGCATGTCTTGAGGCTTAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTTGACAACAGAA
64 CAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----TTTTTTTGACAACAGAA
*
106105415 ATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTT
125 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTT
106105480 TGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAACGTGCCTTT
190 TGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAACGTGCCTTT
106105531 GAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCA
1 GAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCA
106105596 GCATGT-T-TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTG
66 --ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTG
106105659 AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTTTGAA
129 AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTTGAA
*
106105722 AAATATAAATTTAAAAGCAGAAATTGAAATTACCTCAACGTGCC-TT
194 AAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAACGTGCCTTT
*
106105768 GAGGCTCAACTTACCTCTCACAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCA
1 GAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCA
**
106105833 ATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AACAGAAAT
66 ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAAT
106105893 AAAAACATCA
Statistics
Matches: 346, Mismatches: 12, Indels: 18
0.92 0.03 0.05
Matches are distributed among these distances:
235 4 0.01
236 10 0.03
237 108 0.31
238 53 0.15
239 1 0.00
240 72 0.21
244 65 0.19
245 1 0.00
246 32 0.09
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (240 bp):
GAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCA
ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAA
ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTTGAAAA
ATATAAATTTAAAAGCAGAAATTGAAATTAACTCAACGTGCCTTT
Found at i:106111700 original size:23 final size:23
Alignment explanation
Indices: 106111670--106111716 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
106111660 CTGACGGCCT
106111670 TTTCTCCATCATTTGCAAAGTCA
1 TTTCTCCATCATTTGCAAAGTCA
106111693 TTTCTCCATCATTTGCAAAGTCA
1 TTTCTCCATCATTTGCAAAGTCA
106111716 T
1 T
106111717 CCGGTTTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (23 bp):
TTTCTCCATCATTTGCAAAGTCA
Found at i:106117949 original size:1 final size:1
Alignment explanation
Indices: 106117943--106117968 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
106117933 TGGTGGTGAG
106117943 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
106117969 AAATTTTCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:106122544 original size:127 final size:127
Alignment explanation
Indices: 106122270--106122631 Score: 598
Period size: 127 Copynumber: 2.8 Consensus size: 127
106122260 TTCAAGTTTG
* * *
106122270 TTAAGATTCACTCGTTCCAAAGGAATTAAATATCACATCCAGCACGTTAAGACACGATATTTTAA
1 TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTTAGGACACGATATTTTAA
* * * * *
106122335 ACTTCCAAAAAAACTGAGATCACCTCATGATTTTCAAAACACACAAAACAACTCAAGTTGGATT
66 GCCTCC--AAAAACTGAGATCACCTCATGATTTCCAAAACACGCAAAACAACTCAAGTTGAATT
*
106122399 TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCAAGTTAGGACACGATATTTTAA
1 TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTTAGGACACGATATTTTAA
* **
106122464 GCCTCCAAAAACTGAGATCACCTCATAATTTCCAAAACACGGGAAACAACTCAAGTTGAATT
66 GCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACGCAAAACAACTCAAGTTGAATT
106122526 TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTTAGGACACGATATTTTAA
1 TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTTAGGACACGATATTTTAA
106122591 GCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACG
66 GCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACG
106122632 AAACGAAAAT
Statistics
Matches: 219, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
127 154 0.70
129 65 0.30
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.25
Consensus pattern (127 bp):
TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTTAGGACACGATATTTTAA
GCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACGCAAAACAACTCAAGTTGAATT
Found at i:106124848 original size:45 final size:45
Alignment explanation
Indices: 106124756--106124849 Score: 111
Period size: 45 Copynumber: 2.1 Consensus size: 45
106124746 GGCTTAAATT
* * * * *
106124756 TGCTCCATAGCCGATACATGGGGATAAGACTCGCCATTTTTTATC
1 TGCTCCATAGCCGACACATAGAGATAAGACTCGCCAATTTTCATC
106124801 TGCTCCATAGCCGACACATAGAGATAAGA-TC-CGCAATTTTCAGTC
1 TGCTCCATAGCCGACACATAGAGATAAGACTCGC-CAATTTTCA-TC
106124846 TGCT
1 TGCT
106124850 TCCTGCAACT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
43 1 0.02
44 9 0.21
45 32 0.76
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (45 bp):
TGCTCCATAGCCGACACATAGAGATAAGACTCGCCAATTTTCATC
Found at i:106124986 original size:177 final size:177
Alignment explanation
Indices: 106124727--106125492 Score: 1102
Period size: 177 Copynumber: 4.3 Consensus size: 177
106124717 CACTGTAACT
* * * * * * *
106124727 TCAGGGAGATAAAGTTGATGGCTTAAATTTGCTCCATAGCCGATACATGGGGATAAGACTCGCCA
1 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCA
* * * * * *
106124792 TTTTTTATCTGCTCCATAGCCGACACATAGAGATAAGATCCGCAATTTTCAGTCTGCTTCCTGCA
66 TTTTCTATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCA
* * *
106124857 ACTTCAGGAAGATAAGACATGTACCTTCAACCCGCTCTCTTGTTACC
131 ACTTCAGGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGTTACC
* * *
106124904 TCAGAGAGATAATGTTGGTGGCTAAAATCTGCTCAATAGCCGATACATGGAGATAAGACTCGCCA
1 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCA
* * * *
106124969 TTTTCGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCTTGCA
66 TTTTCTATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCA
* * *
106125034 ACTTCAGGAAGAT-AGTACCTGTATCTTCAACTTGCTATCTTGCTACC
131 ACTTCAGGAAGATAAG-ACCTGTATCTTCAACCTGCTCTCTTGTTACC
* * *
106125081 TTAGAGAGATAAGGCTGGTGGTTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCA
1 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCA
106125146 TTTTCTATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCA
66 TTTTCTATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCA
* * *
106125211 AATTCAGGAAGATAAAACCTGTATCTTCAACCTGCTTTCTTGTTACC
131 ACTTCAGGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGTTACC
* * * *
106125258 CCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCTATAGCCGATACATGAAGATAAGACTCGCCA
1 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCA
* *
106125323 TTTTTTATCTGCTCCATAGCCAATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCA
66 TTTTCTATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCA
* * *
106125388 ACTTCAGCAAAATAAGATCTGTATCTTCAACCTGCTCTCTTGTTACC
131 ACTTCAGGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGTTACC
* * * * *
106125435 TTAAAGAGATAAGGCTGATGGCTAAAATTTGCTCTATAGCCGATACATGGAGATAAGA
1 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
106125493 TCTGTAATTT
Statistics
Matches: 531, Mismatches: 56, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
176 2 0.00
177 528 0.99
178 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (177 bp):
TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCA
TTTTCTATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGCA
ACTTCAGGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGTTACC
Found at i:106126602 original size:13 final size:13
Alignment explanation
Indices: 106126584--106126609 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106126574 TCAGCTTCTC
106126584 CTTCTTCTTTTTT
1 CTTCTTCTTTTTT
106126597 CTTCTTCTTTTTT
1 CTTCTTCTTTTTT
106126610 TTAGGTGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTCTTCTTTTTT
Found at i:106136871 original size:127 final size:127
Alignment explanation
Indices: 106136605--106136967 Score: 575
Period size: 127 Copynumber: 2.8 Consensus size: 127
106136595 TTCGAGTTTG
* *
106136605 TTAAGATTCACTCATTCCAAAAGAACT-AAATACCACATCCAGCACGTTAGGACACGATATTTTA
1 TTAAGATTCACTCGTTCCAAAGGAA-TAAAATACCACATCCAGCACGTTAGGACACGATATTTTA
* * * *
106136669 AACTTCCAAAAAAAACTGAGATCACCTCATGATTTCCAAAACATGCGAAACAACTCAAGTTAGAT
65 AGCCTCC---AAAAACTGAGATCACCTCATGATTTCCAAAACACGCGAAACAACTAAAGTTAGAT
106136734 T
127 T
* * *
106136735 TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAACACATTGGGACACGATATTTTAA
1 TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTTAGGACACGATATTTTAA
* *
106136800 GCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACGCGAAAGAACTAAAGTTGGATT
66 GCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACGCGAAACAACTAAAGTTAGATT
106136862 TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTTAGGACACGATATTTTAA
1 TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTTAGGACACGATATTTTAA
*
106136927 GCCTCCAAAAACTGAGATCACCTCATGATTTTCAAAACACG
66 GCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACG
106136968 AGACGAAAAT
Statistics
Matches: 217, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
127 154 0.71
129 1 0.00
130 62 0.29
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.24
Consensus pattern (127 bp):
TTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTTAGGACACGATATTTTAA
GCCTCCAAAAACTGAGATCACCTCATGATTTCCAAAACACGCGAAACAACTAAAGTTAGATT
Found at i:106137659 original size:29 final size:30
Alignment explanation
Indices: 106137584--106137655 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 30
106137574 AAGAAAGCCC
106137584 AAAT-TATACATAAATAAATTTTTAAAGAGA
1 AAATATATACATAAATAAA-TTTTAAAGAGA
*
106137614 ATATATATACAT-AATAAA-TTTAAA-AGA
1 AAATATATACATAAATAAATTTTAAAGAGA
*
106137641 AAATATTTACATAAA
1 AAATATATACATAAA
106137656 ATAATATGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
27 13 0.35
28 8 0.22
30 9 0.24
31 7 0.19
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (30 bp):
AAATATATACATAAATAAATTTTAAAGAGA
Found at i:106140214 original size:23 final size:23
Alignment explanation
Indices: 106140188--106140235 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
106140178 CTGAAACAAA
*
106140188 TAAATATAGTTTAACTGGGAGAT
1 TAAATAGAGTTTAACTGGGAGAT
106140211 TAAATAGAGTTTAACTGGGAGAT
1 TAAATAGAGTTTAACTGGGAGAT
106140234 TA
1 TA
106140236 TCTTTCAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.33
Consensus pattern (23 bp):
TAAATAGAGTTTAACTGGGAGAT
Found at i:106143029 original size:23 final size:23
Alignment explanation
Indices: 106143003--106143047 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
106142993 TGGGTATGTA
*
106143003 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
106143026 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
106143048 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:106143823 original size:26 final size:26
Alignment explanation
Indices: 106143781--106143862 Score: 110
Period size: 26 Copynumber: 3.2 Consensus size: 26
106143771 ATATTTTCTT
* *
106143781 AAAATTTTATCACGGGTATAATCGTC
1 AAAATTTTATCAGGGGTAAAATCGTC
* *
106143807 AAAATTTTATGAGGGGTAAAATCATC
1 AAAATTTTATCAGGGGTAAAATCGTC
* *
106143833 AAAATTTTACCAGGGGTAAAATTGTC
1 AAAATTTTATCAGGGGTAAAATCGTC
106143859 AAAA
1 AAAA
106143863 AATTTACTAG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.30
Consensus pattern (26 bp):
AAAATTTTATCAGGGGTAAAATCGTC
Found at i:106143875 original size:26 final size:26
Alignment explanation
Indices: 106143794--106143880 Score: 77
Period size: 26 Copynumber: 3.3 Consensus size: 26
106143784 ATTTTATCAC
* * * **
106143794 GGGTATAATCGTCAAAATTTTATGAG
1 GGGTAAAATCATCAAAAATTTACCAG
*
106143820 GGGTAAAATCATCAAAATTTTACCAG
1 GGGTAAAATCATCAAAAATTTACCAG
** *
106143846 GGGTAAAATTGTCAAAAAATTTACTA-
1 GGGTAAAATCATC-AAAAATTTACCAG
106143872 GGGTAAAAT
1 GGGTAAAAT
106143881 AGGGATGAGA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 42 0.81
27 10 0.19
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (26 bp):
GGGTAAAATCATCAAAAATTTACCAG
Found at i:106143876 original size:52 final size:52
Alignment explanation
Indices: 106143781--106143880 Score: 123
Period size: 52 Copynumber: 1.9 Consensus size: 52
106143771 ATATTTTCTT
* * *
106143781 AAAATTTTATCACGGGTATAATCGTCAAAATTTTATGAGGGGTAAAATCATC
1 AAAATTTTACCACGGGTAAAATCGTCAAAAATTTATGAGGGGTAAAATCATC
* *
106143833 AAAATTTTACCAGGGGTAAAATTGTCAAAAAATTTACT-A-GGGTAAAAT
1 AAAATTTTACCACGGGTAAAATCGTC-AAAAATTTA-TGAGGGGTAAAAT
106143881 AGGGATGAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
52 31 0.76
53 9 0.22
54 1 0.02
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (52 bp):
AAAATTTTACCACGGGTAAAATCGTCAAAAATTTATGAGGGGTAAAATCATC
Found at i:106149601 original size:49 final size:48
Alignment explanation
Indices: 106149477--106149765 Score: 150
Period size: 48 Copynumber: 6.0 Consensus size: 48
106149467 CACGTGTCTG
* * * * * *
106149477 GGAGTAAAGCCAC-TTATTACCTTTTGTAAGCCTCC-C-CATGTGTCTA
1 GGAGTAAGGTCACTTTATTATCTTTCGTAAGCCTCCTCTCATGCGT-TT
* * * *
106149523 GGAGCAATGTCACTTTATTAACTTCCGTAAGCCTCCTCTCATGCGTTT
1 GGAGTAAGGTCACTTTATTATCTTTCGTAAGCCTCCTCTCATGCGTTT
* ** * *
106149571 GGAAGTAAGGTCACTTTATTATTTTTCGTAAGTTTCC-CTCAATGCATCTA
1 GG-AGTAAGGTCACTTTATTATCTTTCGTAAGCCTCCTCTC-ATGCGT-TT
* * * * *
106149621 GGAGCATA-GTCACTTTACTA-CCTTCAGTAAG-CTTCTCTGC-TGTGTTT
1 GGAGTA-AGGTCACTTTATTATCTTTC-GTAAGCCTCCTCT-CATGCGTTT
* * * *
106149668 GAGAGTAGGGTCATTTTATTA-CTTTTCGTTAGCCT-CTCTCATGCGTCTC
1 G-GAGTAAGGTCACTTTATTATC-TTTCGTAAGCCTCCTCTCATGCGT-TT
* * * * *
106149717 GGAGTAGGGCCACTTTATTATCTTTCATAAGCCTCTTC-CATTCGTTT
1 GGAGTAAGGTCACTTTATTATCTTTCGTAAGCCTCCTCTCATGCGTTT
106149764 GG
1 GG
106149766 GAGCAAGACT
Statistics
Matches: 184, Mismatches: 41, Indels: 35
0.71 0.16 0.13
Matches are distributed among these distances:
46 10 0.05
47 25 0.14
48 75 0.41
49 69 0.38
50 5 0.03
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (48 bp):
GGAGTAAGGTCACTTTATTATCTTTCGTAAGCCTCCTCTCATGCGTTT
Found at i:106149633 original size:98 final size:97
Alignment explanation
Indices: 106149519--106149696 Score: 227
Period size: 97 Copynumber: 1.8 Consensus size: 97
106149509 TCCCCATGTG
* *
106149519 TCTAGGAGCAATGTCACTTTATTAACTTCCGTAAGCCTCCTCT-CATGCGTTTG-GAAGTAAGGT
1 TCTAGGAGCAATGTCACTTTACTAACTTCAGTAAG-CTCCTCTGC-TGCGTTTGAG-AGTAAGGT
*
106149582 CACTTTATTATTTTTCGTAAGTTTCCCTCAATGCA
63 CACTTTATTACTTTTCGTAAGTTTCCCTCAATGCA
* * * *
106149617 TCTAGGAGC-ATAGTCACTTTACTACCTTCAGTAAGCTTCTCTGCTGTGTTTGAGAGTAGGGTCA
1 TCTAGGAGCAAT-GTCACTTTACTAACTTCAGTAAGCTCCTCTGCTGCGTTTGAGAGTAAGGTCA
*
106149681 TTTTATTACTTTTCGT
65 CTTTATTACTTTTCGT
106149697 TAGCCTCTCT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
97 38 0.55
98 31 0.45
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (97 bp):
TCTAGGAGCAATGTCACTTTACTAACTTCAGTAAGCTCCTCTGCTGCGTTTGAGAGTAAGGTCAC
TTTATTACTTTTCGTAAGTTTCCCTCAATGCA
Found at i:106151600 original size:6 final size:6
Alignment explanation
Indices: 106151589--106151616 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
106151579 GCATCAAAAG
106151589 GCCATT GCCATT GCCATT GCCATT GCCA
1 GCCATT GCCATT GCCATT GCCATT GCCA
106151617 CAGTATTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.18, T:0.29
Consensus pattern (6 bp):
GCCATT
Found at i:106155080 original size:29 final size:30
Alignment explanation
Indices: 106155027--106155106 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 30
106155017 GAATTGGATC
106155027 AAATCAAAATTATATATATAAAATTACACA
1 AAATCAAAATTATATATATAAAATTACACA
* *
106155057 AAATCAAAATTCAT-T-TATACAATTACATA
1 AAATCAAAATT-ATATATATAAAATTACACA
*
106155086 TTAAATCATAAATCATATATA
1 --AAATCA-AAATTATATATA
106155107 ATTATGATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
29 12 0.29
30 12 0.29
31 10 0.24
32 5 0.12
33 2 0.05
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (30 bp):
AAATCAAAATTATATATATAAAATTACACA
Found at i:106159491 original size:43 final size:43
Alignment explanation
Indices: 106159440--106159559 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 43
106159430 TGGCTTCGAA
**
106159440 CACAACCTACATGGTTGCTTGTCTGCAAAATTGATGGTTTATC
1 CACAACCTACATGGCAGCTTGTCTGCAAAATTGATGGTTTATC
* * * * *
106159483 CACAACCTACATAGCAGTTTGTTTG-AGAATTTGGTGGTTTATC
1 CACAACCTACATGGCAGCTTGTCTGCA-AAATTGATGGTTTATC
* *
106159526 CACAACTTACATGGCAACTTGTCTGCAAATATTG
1 CACAACCTACATGGCAGCTTGTCTGCAAA-ATTG
106159560 GTGGCTTCGA
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
42 1 0.02
43 56 0.92
44 4 0.07
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (43 bp):
CACAACCTACATGGCAGCTTGTCTGCAAAATTGATGGTTTATC
Found at i:106166643 original size:15 final size:15
Alignment explanation
Indices: 106166623--106166670 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
106166613 TCAAAGATGG
106166623 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
106166638 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
106166653 -TTTATGGATATGAA
1 GTTTATGGATATGAA
106166667 GTTT
1 GTTT
106166671 TTGTAGGTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:106166650 original size:29 final size:29
Alignment explanation
Indices: 106166617--106166676 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
106166607 AAGGGTTCAA
*
106166617 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGATTTATGGATATGAAGTTTATGT
*
106166646 AGATGGATTTATGGATATGAAGTTTTTGT
1 AGATGGATTTATGGATATGAAGTTTATGT
106166675 AG
1 AG
106166677 GTTCGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (29 bp):
AGATGGATTTATGGATATGAAGTTTATGT
Found at i:106168456 original size:18 final size:17
Alignment explanation
Indices: 106168410--106168458 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
106168400 TAAGGTTTTT
*
106168410 TAAAATATATATATAATA
1 TAAAATATATA-AAAATA
106168428 TAAAAT-TATAAAAATA
1 TAAAATATATAAAAATA
*
106168444 TTTAAATATATAAAA
1 -TAAAATATATAAAA
106168459 GCATTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 5 0.19
17 9 0.33
18 13 0.48
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAAATATATAAAAATA
Found at i:106168590 original size:28 final size:27
Alignment explanation
Indices: 106168559--106168628 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
106168549 AATTTTATAA
* **
106168559 TATACATTTTTATAAATTGATTTGCTTT
1 TATATATTTTTATAAATT-ATAAGCTTT
* *
106168587 TATATATTTGTATATATTATAAGCTTT
1 TATATATTTTTATAAATTATAAGCTTT
*
106168614 TATATATTTTGATAA
1 TATATATTTTTATAA
106168629 TTTAAAAATT
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
27 19 0.56
28 15 0.44
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (27 bp):
TATATATTTTTATAAATTATAAGCTTT
Found at i:106171349 original size:22 final size:22
Alignment explanation
Indices: 106171324--106171367 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
106171314 GAAAACCCGA
106171324 AAACA-AAGAATTCACAAAATGT
1 AAACACAA-AATTCACAAAATGT
* *
106171346 AAACACAAAATTCTCTAAATGT
1 AAACACAAAATTCACAAAATGT
106171368 GTTATGAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.55, C:0.16, G:0.07, T:0.23
Consensus pattern (22 bp):
AAACACAAAATTCACAAAATGT
Found at i:106178954 original size:21 final size:21
Alignment explanation
Indices: 106178920--106178959 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
106178910 TATTTTTTTA
*
106178920 TTAATTTCTTTTTCTCAAATAT
1 TTAATTTCTGTTTC-CAAATAT
106178942 TTAATTT-TGTTTCCAAAT
1 TTAATTTCTGTTTCCAAAT
106178960 CTTTTTAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 5 0.29
22 7 0.41
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
TTAATTTCTGTTTCCAAATAT
Found at i:106187920 original size:8 final size:8
Alignment explanation
Indices: 106187901--106187935 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
106187891 TAAAAGAAAG
106187901 ATAAAA-A
1 ATAAAATA
106187908 ATAAAATA
1 ATAAAATA
*
106187916 ATAAAAAA
1 ATAAAATA
106187924 ATAAAATA
1 ATAAAATA
106187932 ATAA
1 ATAA
106187936 TAAAATCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (8 bp):
ATAAAATA
Found at i:106187924 original size:16 final size:16
Alignment explanation
Indices: 106187903--106187941 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
106187893 AAAGAAAGAT
106187903 AAAAAATAAAATAATA
1 AAAAAATAAAATAATA
106187919 AAAAAATAAAATAATA
1 AAAAAATAAAATAATA
*
106187935 ATAAAAT
1 AAAAAAT
106187942 CAATAATATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAAAATAAAATAATA
Found at i:106187948 original size:12 final size:11
Alignment explanation
Indices: 106187901--106187949 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
106187891 TAAAAGAAAG
106187901 ATAA-AAAATA
1 ATAATAAAATA
106187911 A-AATAATAA-A
1 ATAATAA-AATA
*
106187921 AAAATAAAATA
1 ATAATAAAATA
106187932 ATAATAAAATCA
1 ATAATAAAAT-A
106187944 ATAATA
1 ATAATA
106187950 TCAATAAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
9 2 0.06
10 7 0.21
11 17 0.52
12 7 0.21
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (11 bp):
ATAATAAAATA
Found at i:106188017 original size:12 final size:11
Alignment explanation
Indices: 106187986--106188053 Score: 52
Period size: 12 Copynumber: 6.1 Consensus size: 11
106187976 TGATAATAGT
106187986 AAAAT-AAA-A
1 AAAATAAAAGA
106187995 AAAATACGAAAGA
1 AAAATA--AAAGA
106188008 AAAATAGAAA-A
1 AAAATA-AAAGA
* *
106188019 AAATTAAAATA
1 AAAATAAAAGA
*
106188030 AAAATTAAAATA
1 AAAA-TAAAAGA
106188042 AAAATAAAAGA
1 AAAATAAAAGA
106188053 A
1 A
106188054 TATAAAAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
9 5 0.10
10 3 0.06
11 17 0.34
12 18 0.36
13 7 0.14
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.15
Consensus pattern (11 bp):
AAAATAAAAGA
Found at i:106188033 original size:6 final size:6
Alignment explanation
Indices: 106188017--106188050 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
106188007 AAAAATAGAA
* *
106188017 AAAAAT TAAAAT AAAAAT TAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
106188051 GAATATAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:106188039 original size:29 final size:27
Alignment explanation
Indices: 106188008--106188086 Score: 95
Period size: 29 Copynumber: 2.8 Consensus size: 27
106187998 ATACGAAAGA
106188008 AAAATAGAAAAAAATTAAAATAAAAATT
1 AAAATA-AAAAAAATTAAAATAAAAATT
** *
106188036 AAAATAAAAATAAAAGAATATAAAAAATT
1 AAAATAAAAA-AAATTAAAAT-AAAAATT
106188065 AAAATATAAAAAAATTAAAATA
1 AAAATA-AAAAAAATTAAAATA
106188087 TAAGTATAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
27 4 0.10
28 14 0.33
29 20 0.48
30 4 0.10
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.22
Consensus pattern (27 bp):
AAAATAAAAAAAATTAAAATAAAAATT
Found at i:106188062 original size:23 final size:23
Alignment explanation
Indices: 106188029--106188089 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
106188019 AAATTAAAAT
106188029 AAAAATT--AAAATAAAA-ATAA
1 AAAAATTAAAAAATAAAATATAA
*
106188049 AAGAATATAAAAAATTAAAATATAA
1 AAAAAT-TAAAAAA-TAAAATATAA
*
106188074 AAAAATTAAAATATAA
1 AAAAATTAAAAAATAA
106188090 GTATAAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
20 5 0.15
21 1 0.03
23 7 0.21
24 11 0.33
25 9 0.27
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (23 bp):
AAAAATTAAAAAATAAAATATAA
Found at i:106188084 original size:6 final size:7
Alignment explanation
Indices: 106188018--106188089 Score: 53
Period size: 8 Copynumber: 10.3 Consensus size: 7
106188008 AAAATAGAAA
106188018 AAAAT-T
1 AAAATAT
106188024 AAAATA-
1 AAAATAT
106188030 AAAAT-T
1 AAAATAT
106188036 AAAATA-
1 AAAATAT
*
106188042 AAAATAA
1 AAAATAT
106188049 AAGAATAT
1 AA-AATAT
*
106188057 AAAAAATT
1 AAAATA-T
106188065 AAAATAT
1 AAAATAT
*
106188072 AAAAAAATT
1 -AAAATA-T
106188081 AAAATAT
1 AAAATAT
106188088 AA
1 AA
106188090 GTATAAGAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
6 21 0.40
7 9 0.17
8 22 0.42
9 1 0.02
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (7 bp):
AAAATAT
Found at i:106188087 original size:16 final size:16
Alignment explanation
Indices: 106188008--106188089 Score: 81
Period size: 16 Copynumber: 5.6 Consensus size: 16
106187998 ATACGAAAGA
*
106188008 AAAATAGAAAAAAATT
1 AAAATATAAAAAAATT
106188024 -AAA-AT--AAAAATT
1 AAAATATAAAAAAATT
106188036 AAAATA-AAAATAAA--
1 AAAATATAAAA-AAATT
*
106188050 AGAATAT-AAAAAATT
1 AAAATATAAAAAAATT
106188065 AAAATATAAAAAAATT
1 AAAATATAAAAAAATT
106188081 AAAATATAA
1 AAAATATAA
106188090 GTATAAGAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 18
0.72 0.04 0.24
Matches are distributed among these distances:
12 7 0.13
13 6 0.11
14 10 0.19
15 11 0.20
16 20 0.37
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (16 bp):
AAAATATAAAAAAATT
Found at i:106188144 original size:22 final size:20
Alignment explanation
Indices: 106188018--106188177 Score: 74
Period size: 22 Copynumber: 7.5 Consensus size: 20
106188008 AAAATAGAAA
*
106188018 AAAATTAAAATAAA-AAT-T
1 AAAATAAAAATAAATAATAT
*
106188036 AAAATAAAAATAAAAGAATAT
1 AAAATAAAAAT-AAATAATAT
*
106188057 AAAAAATTAAAATATAAA-AAAATT
1 --AAAA-TAAAA-ATAAATAATA-T
* * *
106188081 AAAATATAAGTATAAGAATACT
1 AAAATAAAAATA-AATAATA-T
* * *
106188103 AAATTAATTAATTAATTAATTAGT
1 AAAATAA--AAATAAATAA-TA-T
106188127 AAAATAAAAATAAATAATAT
1 AAAATAAAAATAAATAATAT
* *
106188147 AACAATTACAAATAAATAAAAT
1 AA-AA-TAAAAATAAATAATAT
106188169 AAAATAAAA
1 AAAATAAAA
106188178 TTGGGGTAAT
Statistics
Matches: 109, Mismatches: 18, Indels: 28
0.70 0.12 0.18
Matches are distributed among these distances:
18 10 0.09
19 3 0.03
20 12 0.11
21 13 0.12
22 37 0.34
23 10 0.09
24 22 0.20
25 2 0.02
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (20 bp):
AAAATAAAAATAAATAATAT
Found at i:106188501 original size:30 final size:30
Alignment explanation
Indices: 106188457--106188514 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
106188447 ATGTGAGATC
* * * *
106188457 CCACACGCCTGTGTGGCTAGGCCGTGTGCT
1 CCACACACCCGTGTGGCCAGGCCATGTGCT
106188487 CCACACACCCGTGTGGCCAGGCCATGTG
1 CCACACACCCGTGTGGCCAGGCCATGTG
106188515 GGTCAAAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.14, C:0.36, G:0.31, T:0.19
Consensus pattern (30 bp):
CCACACACCCGTGTGGCCAGGCCATGTGCT
Found at i:106192570 original size:30 final size:30
Alignment explanation
Indices: 106192530--106192611 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
106192520 AGGGCTAACG
* *
106192530 CATGGGCGTGTAGCCTGCCCGTGTGGATCA
1 CATGGACGTGTGGCCTGCCCGTGTGGATCA
*
106192560 CATGGACGTGTGGCCTACCCGTGTGGATCA
1 CATGGACGTGTGGCCTGCCCGTGTGGATCA
106192590 CATGGACGTGTGGCCTGCCCGT
1 CATGGACGTGTGGCCTGCCCGT
106192612 ATGGTTCTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.13, C:0.28, G:0.35, T:0.23
Consensus pattern (30 bp):
CATGGACGTGTGGCCTGCCCGTGTGGATCA
Found at i:106192571 original size:17 final size:17
Alignment explanation
Indices: 106192549--106192602 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
106192539 GTAGCCTGCC
106192549 CGTGTGGATCACATGGA
1 CGTGTGGATCACATGGA
***
106192566 CGTGTGG--C-C-TACC
1 CGTGTGGATCACATGGA
106192579 CGTGTGGATCACATGGA
1 CGTGTGGATCACATGGA
106192596 CGTGTGG
1 CGTGTGG
106192603 CCTGCCCGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 8
0.66 0.15 0.20
Matches are distributed among these distances:
13 8 0.30
14 1 0.04
15 2 0.07
16 1 0.04
17 15 0.56
ACGTcount: A:0.17, C:0.22, G:0.37, T:0.24
Consensus pattern (17 bp):
CGTGTGGATCACATGGA
Found at i:106196089 original size:3 final size:3
Alignment explanation
Indices: 106196081--106196111 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
106196071 AAATATTGAA
*
106196081 AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
106196112 TTGAAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:106196223 original size:3 final size:3
Alignment explanation
Indices: 106196215--106196247 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
106196205 GCACTAACAT
106196215 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
106196248 GTATATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:106198331 original size:168 final size:165
Alignment explanation
Indices: 106198043--106198517 Score: 500
Period size: 168 Copynumber: 2.9 Consensus size: 165
106198033 AAAAAACATG
106198043 AATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGGTCTTT
1 AATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT-G-CTTT
* * *
106198108 TTGAAACTTGATTTGAAAAGTAGATTTTGGAAAATA---GAAAT-TA-AAAGACTCAACTCACCT
64 TTGAAAC-----TT-AAAAGTAGATTTT-GAAAATACTCGACATGTACAGAGGCTCAACTCACCT
*
106198168 CTCGCAATATGAGTTGATTTTTGAAAACATGA-ATT-AAAATAAA
122 CTCGCAATATGAGTTGATTTTTGAAAAC-GGACATTAAAAATAAA
* * * *
106198211 AATTGAAAATAGCTCAACACATGAGCCAAAGCTTAACTCACCTCTCGCAATATGAGTTAGCTTTT
1 AATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT-GCTTTT
* * *
106198276 TGAAACTTAAAAGTAGATTTTGAAAATACCTCGACGTGTGACCCGAGGTTCAACTCACCTCTCGC
65 TGAAACTTAAAAGTAGATTTTGAAAATA-CTCGACATGT-A-CAGAGGCTCAACTCACCTCTCGC
* *
106198341 AATATGAGTTGA--TTTAAAAACGGACATTAAAAATAGA
127 AATATGAGTTGATTTTTGAAAACGGACATTAAAAATAAA
* * *
106198378 AATTGAAAGTGGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGCTTTTT
* *
106198443 G--AC--AAACAG-A-AATTT-AAAATATCTC-AGCATGT-CTTGAGGCTCAACTCACCTCTCGC
66 GAAACTTAAA-AGTAGATTTTGAAAATA-CTCGA-CATGTAC-AGAGGCTCAACTCACCTCTCGC
106198499 AATATGAGTTGATTTTTGA
127 AATATGAGTTGATTTTTGA
106198518 CAAGTAGAAA
Statistics
Matches: 265, Mismatches: 27, Indels: 38
0.80 0.08 0.12
Matches are distributed among these distances:
157 1 0.00
158 32 0.12
159 1 0.00
160 24 0.09
161 17 0.06
162 6 0.02
163 2 0.01
164 5 0.02
165 3 0.01
166 19 0.07
167 70 0.26
168 85 0.32
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (165 bp):
AATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGCTTTTT
GAAACTTAAAAGTAGATTTTGAAAATACTCGACATGTACAGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAACGGACATTAAAAATAAA
Found at i:106198421 original size:85 final size:84
Alignment explanation
Indices: 106198156--106198440 Score: 278
Period size: 85 Copynumber: 3.4 Consensus size: 84
106198146 AATTAAAAGA
* *
106198156 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGA-ATT-AAAATAAAAATTGAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGA--TTT-AAAA-ACGACATTAAAAATAGAAATTGAAA
* * *
106198219 ATAGCTCAACACATGAGCCAAAG
62 ATAGCTCAGCACGTGAGCCAAGG
* * *** * **
106198242 CTTAACTCACCTCTCGCAATATGAGTTAGCTTTTTGAA--AC-TTAAAAGTAGATTTTGAAAATA
1 CTCAACTCACCTCTCGCAATATGAGTT-GATTTAAAAACGACATTAAAAATAGAAATTGAAAATA
* * *
106198304 CCTC-G-ACGTGTGACCCGAGG
65 GCTCAGCAC--GTGAGCCAAGG
* * *
106198324 TTCAACTCACCTCTCGCAATATGAGTTGATTTAAAAACGGACATTAAAAATAGAAATTGAAAGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTAAAAAC-GACATTAAAAATAGAAATTGAAAATA
106198389 GCTCAGCACGTGAGCCAAGG
65 GCTCAGCACGTGAGCCAAGG
106198409 CTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTT
106198441 TTGACAAACA
Statistics
Matches: 158, Mismatches: 30, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
80 2 0.01
81 9 0.06
82 50 0.32
83 1 0.01
84 3 0.02
85 63 0.40
86 27 0.17
87 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (84 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTAAAAACGACATTAAAAATAGAAATTGAAAATAG
CTCAGCACGTGAGCCAAGG
Found at i:106198814 original size:14 final size:14
Alignment explanation
Indices: 106198795--106198829 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
106198785 GTTGATTTTT
106198795 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
106198809 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
106198823 TTGAAAA
1 TTGAAAA
106198830 TACCTCAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:106198937 original size:85 final size:87
Alignment explanation
Indices: 106198580--106198972 Score: 427
Period size: 89 Copynumber: 4.5 Consensus size: 87
106198570 CATGTAACCC
* * * *
106198580 GAGGCTCAACTCACCTCTTGCCATATGAGTTAATTTTTGAAAAATATAAATTGAAAGAAACAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAG--ACAGAA
* *
106198645 ATTAAAAATACCTCAGCGTGCCCT
64 ATTGAAAATACCTCAGCGTGCTCT
* * * * * * *
106198669 GAGGTTCAACTCATCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAACTTGAAAAAACGGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTG-AAAGACAGAAA
* *
106198734 TTGAAGATACTTCAGCGTG-TCTT
65 TTGAAAATACCTCAGCGTGCTC-T
* * *
106198757 GCGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAA-AGCAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACATAAATTGAAAGA-CAGA
*
106198821 AATTGAAAATACCTCAGTGTGCTCT
63 AATTGAAAATACCTCAGCGTGCTCT
* * * *** * *
106198846 GGGGCTCAACTCACCTCTCACAATATGAGTT-A-TTTGGAAAGGTAAAAATT-AAAGACAGAATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAGACAGAA-A
*
106198908 TTGAAAATACCTCAGCGTGTTCT
65 TTGAAAATACCTCAGCGTGCTCT
106198931 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
106198973 GACAGAAGTG
Statistics
Matches: 253, Mismatches: 41, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
84 8 0.03
85 64 0.25
86 1 0.00
87 8 0.03
88 53 0.21
89 97 0.38
90 22 0.09
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (87 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAGACAGAAAT
TGAAAATACCTCAGCGTGCTCT
Found at i:106198964 original size:174 final size:178
Alignment explanation
Indices: 106198580--106198968 Score: 461
Period size: 177 Copynumber: 2.2 Consensus size: 178
106198570 CATGTAACCC
* * * * *
106198580 GAGGCTCAACTCACCTCTTGCCATATGAGTT-A-ATTTTTGAAAAATATAAATTGAAAGAAACAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAGAAACAG
* * ** *
106198643 AAATTAAAAATACCTCAGCGTGCCCTGAGGTTCAACTCATCTCTCGTAATATGAGTTGATTTTTG
66 AAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTGG
* * * * *
106198708 AAAAGCATAACTTGAAAAAACGGAAATTGAAGATACTTCAGCGTGTCTT
131 AAAAGCAAAAATT-AAAAAACAGAAATTGAAAATACCTCAGCGTGTCTT
* * *
106198757 GCGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG-AA-AAGCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAGAAACAG
* * * *
106198820 AAATTGAAAATACCTCAGTGTGCTCTGGGGCTCAACTCACCTCTCACAATATGAGTT-A-TTTGG
66 AAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTGG
* * * *
106198883 AAAGGTAAAAATT-AAAGACAGAATTTTGAAAATACCTCAGCGTGT-TCT
131 AAAAGCAAAAATTAAAAAACAGAA-ATTGAAAATACCTCAGCGTGTCT-T
106198931 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
106198969 GAAAGACAGA
Statistics
Matches: 180, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
173 9 0.05
174 55 0.31
175 13 0.07
176 1 0.01
177 81 0.45
178 3 0.02
179 18 0.10
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (178 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAGAAACAG
AAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTGG
AAAAGCAAAAATTAAAAAACAGAAATTGAAAATACCTCAGCGTGTCTT
Found at i:106209987 original size:3 final size:3
Alignment explanation
Indices: 106209979--106210008 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
106209969 ACAAATATTG
*
106209979 ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
106210009 TTGAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:106209992 original size:12 final size:12
Alignment explanation
Indices: 106209972--106210008 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
106209962 ACCATATACA
*
106209972 AATATTGATAAT
1 AATAATGATAAT
106209984 AATAATGATAAT
1 AATAATGATAAT
*
106209996 AATAATAATAAT
1 AATAATGATAAT
106210008 A
1 A
106210009 TTGAAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATAATGATAAT
Found at i:106210091 original size:3 final size:3
Alignment explanation
Indices: 106210078--106210115 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
106210068 ATATACGCAT
106210078 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
106210116 GTATATAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:106214392 original size:30 final size:29
Alignment explanation
Indices: 106214320--106214392 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 29
106214310 CATGCCAACA
106214320 AATAATTTAAAAATTATAAAAAATATTAT
1 AATAATTTAAAAATTATAAAAAATATTAT
*
106214349 AATAGTTTTAAAAATTATATAAAAA-ATTTAT
1 AATA-ATTTAAAAATTATA-AAAAATA-TTAT
106214380 AA-AATTTCAAAAA
1 AATAATTT-AAAAA
106214393 AAAAAAACCA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 7 0.18
30 20 0.53
31 11 0.29
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (29 bp):
AATAATTTAAAAATTATAAAAAATATTAT
Found at i:106216909 original size:82 final size:82
Alignment explanation
Indices: 106216806--106217139 Score: 650
Period size: 82 Copynumber: 4.1 Consensus size: 82
106216796 GTTTGGAATT
* *
106216806 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
106216871 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
106216888 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
106216953 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
106216970 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
106217035 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
106217052 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
106217117 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
106217134 GGTGAT
1 GGTGAT
106217140 CCGAATATGA
Statistics
Matches: 250, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 250 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (82 bp):
GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
CTAGCAGGCTAAGTGCC
Found at i:106217140 original size:41 final size:41
Alignment explanation
Indices: 106216806--106217139 Score: 533
Period size: 41 Copynumber: 8.1 Consensus size: 41
106216796 GTTTGGAATT
*
106216806 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
106216847 GGTGATTTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
106216888 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCC
1 GGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
106216929 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
106216970 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCC
1 GGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
106217011 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
106217052 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCC
1 GGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
106217093 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
106217134 GGTGAT
1 GGTGAT
106217140 CCGAATATGA
Statistics
Matches: 266, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 266 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (41 bp):
GGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:106224194 original size:41 final size:41
Alignment explanation
Indices: 106224132--106224389 Score: 408
Period size: 41 Copynumber: 6.3 Consensus size: 41
106224122 GTTTGGAATT
* *
106224132 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
106224173 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* * *
106224214 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
106224255 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* * *
106224296 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
106224337 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
106224378 GGTGATCCGAAT
1 GGTGATCTGAAT
106224390 ATGATGAATT
Statistics
Matches: 197, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 197 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (41 bp):
GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:106224269 original size:82 final size:82
Alignment explanation
Indices: 106224132--106224383 Score: 495
Period size: 82 Copynumber: 3.1 Consensus size: 82
106224122 GTTTGGAATT
*
106224132 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
106224197 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
106224214 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
106224279 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
106224296 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
106224361 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
106224378 GGTGAT
1 GGTGAT
106224384 CCGAATATGA
Statistics
Matches: 169, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 169 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (82 bp):
GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGCGCCGGTGATCTGAATCAGGCTATAAGC
CTAGCAGGCTAAGTGCC
Found at i:106225661 original size:35 final size:35
Alignment explanation
Indices: 106225622--106225725 Score: 172
Period size: 35 Copynumber: 3.0 Consensus size: 35
106225612 ATGGCAAAGT
*
106225622 TATGACACGTAGATATGGTATTATCCATACTGAGC
1 TATGACACGTAGGTATGGTATTATCCATACTGAGC
106225657 TATGACACGTAGGTATGGTATTATCCATACTGAGC
1 TATGACACGTAGGTATGGTATTATCCATACTGAGC
* * *
106225692 TATAATACGTAGGTATGGTATTTTCCATACTGAG
1 TATGACACGTAGGTATGGTATTATCCATACTGAG
106225726 TTGAAAAATG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (35 bp):
TATGACACGTAGGTATGGTATTATCCATACTGAGC
Found at i:106225743 original size:35 final size:35
Alignment explanation
Indices: 106225628--106225763 Score: 134
Period size: 35 Copynumber: 3.9 Consensus size: 35
106225618 AAGTTATGAC
* *
106225628 ACGTAGATATGGTATTATCCATACTGAGCTATG--AC
1 ACGTAGGTATGGTATTATCCATACTGAG-T-TGAAAA
* *
106225663 ACGTAGGTATGGTATTATCCATACTGAGCT-ATAAT
1 ACGTAGGTATGGTATTATCCATACTGAGTTGA-AAA
*
106225698 ACGTAGGTATGGTATTTTCCATACTGAGTTGAAAA
1 ACGTAGGTATGGTATTATCCATACTGAGTTGAAAA
* * * **
106225733 ATGTAAGTATGGTATTAACCATTTTGAGTTG
1 ACGTAGGTATGGTATTATCCATACTGAGTTG
106225764 TGAATCATGG
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
33 1 0.01
35 83 0.98
36 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.35
Consensus pattern (35 bp):
ACGTAGGTATGGTATTATCCATACTGAGTTGAAAA
Found at i:106226308 original size:55 final size:55
Alignment explanation
Indices: 106226235--106226359 Score: 241
Period size: 55 Copynumber: 2.3 Consensus size: 55
106226225 AAGGTAATGA
*
106226235 ATGAAATCATTTTAAAAAATTAGGATAAAGTAGTAGTATTATGGTATGTTGGTAG
1 ATGAAATCATTTTGAAAAATTAGGATAAAGTAGTAGTATTATGGTATGTTGGTAG
106226290 ATGAAATCATTTTGAAAAATTAGGATAAAGTAGTAGTATTATGGTATGTTGGTAG
1 ATGAAATCATTTTGAAAAATTAGGATAAAGTAGTAGTATTATGGTATGTTGGTAG
106226345 ATGAAATCATTTTGA
1 ATGAAATCATTTTGA
106226360 TTATAGGTTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
55 69 1.00
ACGTcount: A:0.39, C:0.02, G:0.22, T:0.37
Consensus pattern (55 bp):
ATGAAATCATTTTGAAAAATTAGGATAAAGTAGTAGTATTATGGTATGTTGGTAG
Found at i:106233818 original size:6 final size:6
Alignment explanation
Indices: 106233807--106233834 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
106233797 ACTCCGTACC
106233807 TTACTG TTACTG TTACTG TTACTG TTAC
1 TTACTG TTACTG TTACTG TTACTG TTAC
106233835 CCTTACGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (6 bp):
TTACTG
Found at i:106239429 original size:31 final size:31
Alignment explanation
Indices: 106239391--106239455 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
106239381 TGGTTGGTCC
106239391 AGAGTTAATTTAAGAAACAGAAAACACTATT
1 AGAGTTAATTTAAGAAACAGAAAACACTATT
106239422 AGAGTTAATTTAAGAAACAGAAAACACTATT
1 AGAGTTAATTTAAGAAACAGAAAACACTATT
106239453 AGA
1 AGA
106239456 AAGTTTCAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.52, C:0.09, G:0.14, T:0.25
Consensus pattern (31 bp):
AGAGTTAATTTAAGAAACAGAAAACACTATT
Found at i:106240345 original size:17 final size:17
Alignment explanation
Indices: 106240323--106240372 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
106240313 CTTATTATAT
106240323 AAGTAAATAATTATAAA
1 AAGTAAATAATTATAAA
* *
106240340 AAGTAAATTA-TATTAA
1 AAGTAAATAATTATAAA
*
106240356 AA-TATATAATTATAAA
1 AAGTAAATAATTATAAA
106240372 A
1 A
106240373 TATTAATTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
15 5 0.19
16 13 0.48
17 9 0.33
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (17 bp):
AAGTAAATAATTATAAA
Found at i:106240411 original size:10 final size:10
Alignment explanation
Indices: 106240396--106240429 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
106240386 AAGAATGAAT
*
106240396 AAAAGAAATA
1 AAAAGAAAGA
106240406 AAAAGAAAGA
1 AAAAGAAAGA
106240416 AAAAGAAAAGA
1 AAAAG-AAAGA
106240427 AAA
1 AAA
106240430 GGCACGAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (10 bp):
AAAAGAAAGA
Found at i:106244911 original size:5 final size:5
Alignment explanation
Indices: 106244901--106244949 Score: 98
Period size: 5 Copynumber: 9.8 Consensus size: 5
106244891 ATTTGATTAT
106244901 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
106244950 TACTTAAACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:106245284 original size:21 final size:21
Alignment explanation
Indices: 106245260--106245305 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
106245250 CTTTTTATTT
*
106245260 AATTAACTATCGAAACGTTAA
1 AATTAACTATCGAAACATTAA
* * *
106245281 AATTTATTTTCGAAACATTAA
1 AATTAACTATCGAAACATTAA
106245302 AATT
1 AATT
106245306 TCTTAACGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (21 bp):
AATTAACTATCGAAACATTAA
Found at i:106249636 original size:21 final size:21
Alignment explanation
Indices: 106249612--106249665 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 21
106249602 GAAACTTCAT
106249612 TTCTTAAAACATAATTAAGTG
1 TTCTTAAAACATAATTAAGTG
* *
106249633 TTCTT--AA-TTAATTATGTG
1 TTCTTAAAACATAATTAAGTG
106249651 TTCTTAAAACATAAT
1 TTCTTAAAACATAAT
106249666 ACCGTATGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 14 0.52
19 2 0.07
20 2 0.07
21 9 0.33
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.44
Consensus pattern (21 bp):
TTCTTAAAACATAATTAAGTG
Found at i:106260570 original size:20 final size:19
Alignment explanation
Indices: 106260541--106260581 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
106260531 GTTAGAATTA
106260541 TTATTATTAGAAAATAGAAT
1 TTATTATTAGAAAATA-AAT
* *
106260561 TTATTCTTAGGAAATAAAT
1 TTATTATTAGAAAATAAAT
106260580 TT
1 TT
106260582 CCACTACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (19 bp):
TTATTATTAGAAAATAAAT
Found at i:106260978 original size:17 final size:17
Alignment explanation
Indices: 106260956--106260989 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106260946 TAGTAATATC
*
106260956 TCTTTCGAGCATAAGAG
1 TCTTTCAAGCATAAGAG
106260973 TCTTTCAAGCATAAGAG
1 TCTTTCAAGCATAAGAG
106260990 CAATTGACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (17 bp):
TCTTTCAAGCATAAGAG
Found at i:106262213 original size:16 final size:15
Alignment explanation
Indices: 106262175--106262216 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
106262165 TTTCCAAAAA
*
106262175 TAAAT-ATTATTTAT
1 TAAATAATTTTTTAT
106262189 TAAATTAATTTTTTAAT
1 TAAA-TAATTTTTT-AT
106262206 TAAATAATTTT
1 TAAATAATTTT
106262217 CTCAACTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 4 0.17
15 1 0.04
16 13 0.54
17 6 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TAAATAATTTTTTAT
Found at i:106262391 original size:22 final size:21
Alignment explanation
Indices: 106262350--106262391 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
106262340 AACTTCAGTT
*
106262350 AATTAAATAATAATTCGAAAA
1 AATTAAATAATAATTAGAAAA
*
106262371 AATTAAATTAATTATTAGAAA
1 AATTAAA-TAATAATTAGAAA
106262392 TTTTAGCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (21 bp):
AATTAAATAATAATTAGAAAA
Found at i:106264776 original size:13 final size:13
Alignment explanation
Indices: 106264758--106264800 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
106264748 TTCAGTTTTT
106264758 TATTTTTAATTCA
1 TATTTTTAATTCA
*
106264771 TATTTTTAATTAA
1 TATTTTTAATTCA
*
106264784 TAATTATTTTATTCA
1 T-ATT-TTTAATTCA
106264799 TA
1 TA
106264801 AAATCAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 13 0.52
14 4 0.16
15 8 0.32
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTTTTAATTCA
Found at i:106264947 original size:15 final size:15
Alignment explanation
Indices: 106264923--106264953 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
106264913 TTTGTATGTG
106264923 TATTTAAAATAATTA
1 TATTTAAAATAATTA
*
106264938 TATTTGAAATAATTA
1 TATTTAAAATAATTA
106264953 T
1 T
106264954 TTCATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (15 bp):
TATTTAAAATAATTA
Found at i:106265920 original size:2 final size:2
Alignment explanation
Indices: 106265913--106265940 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
106265903 CCTAAAATTA
106265913 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106265941 TTCGGCTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106269726 original size:17 final size:18
Alignment explanation
Indices: 106269693--106269729 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
106269683 TGATATTGCT
106269693 AAGAAATATAGAATATAA
1 AAGAAATATAGAATATAA
*
106269711 AAGAAAT-TAGATTATAA
1 AAGAAATATAGAATATAA
106269728 AA
1 AA
106269730 TCTTTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.24
Consensus pattern (18 bp):
AAGAAATATAGAATATAA
Found at i:106270220 original size:31 final size:31
Alignment explanation
Indices: 106270183--106270254 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 31
106270173 ATTAGTAAAA
106270183 ATAAAATTATAC-TTTAAATCCTCTTA-AAATT
1 ATAAAATTATACATTT-AATCCT-TTACAAATT
106270214 ATAAAATT-T-CGATTTAATCCTTTACAAATT
1 ATAAAATTATAC-ATTTAATCCTTTACAAATT
*
106270244 ATAAAAATATA
1 ATAAAATTATA
106270255 AACTATAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
29 4 0.11
30 19 0.54
31 12 0.34
ACGTcount: A:0.47, C:0.11, G:0.01, T:0.40
Consensus pattern (31 bp):
ATAAAATTATACATTTAATCCTTTACAAATT
Found at i:106270994 original size:14 final size:14
Alignment explanation
Indices: 106270975--106271001 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
106270965 CTATCACTTT
106270975 TAAAAATAAGTAAA
1 TAAAAATAAGTAAA
106270989 TAAAAATAAGTAA
1 TAAAAATAAGTAA
106271002 TCATAATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.22
Consensus pattern (14 bp):
TAAAAATAAGTAAA
Found at i:106273432 original size:47 final size:47
Alignment explanation
Indices: 106273379--106273474 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
106273369 ATAAAAATCT
106273379 TTGATTTTTATGCATAAATATGTATATTAAATTATTATTATTGATTA
1 TTGATTTTTATGCATAAATATGTATATTAAATTATTATTATTGATTA
*
106273426 TTGATTTTTATGCATAAATATGTATATTAAATTATTATTATTTATTA
1 TTGATTTTTATGCATAAATATGTATATTAAATTATTATTATTGATTA
106273473 TT
1 TT
106273475 ATGGTTTTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.55
Consensus pattern (47 bp):
TTGATTTTTATGCATAAATATGTATATTAAATTATTATTATTGATTA
Found at i:106273659 original size:22 final size:23
Alignment explanation
Indices: 106273632--106273689 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
106273622 TACTTTTTAT
106273632 TTAAGTAAATATATATTTATT-A
1 TTAAGTAAATATATATTTATTAA
*
106273654 TTAAGTAAA-AGATATTTATTAA
1 TTAAGTAAATATATATTTATTAA
* *
106273676 TTAAATAATTATAT
1 TTAAGTAAATATAT
106273690 TACAAGATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 10 0.33
22 17 0.57
23 3 0.10
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (23 bp):
TTAAGTAAATATATATTTATTAA
Found at i:106273689 original size:21 final size:21
Alignment explanation
Indices: 106273618--106273690 Score: 53
Period size: 21 Copynumber: 3.5 Consensus size: 21
106273608 TAAATTTATT
* *
106273618 TAATTACTTTTTATTTAAGTAAA
1 TAATTA-TATTTA-TTAATTAAA
*
106273641 T-A-TATATTTATT-ATTAAG
1 TAATTATATTTATTAATTAAA
**
106273659 TAAAAGATATTTATTAATTAAA
1 T-AATTATATTTATTAATTAAA
106273681 TAATTATATT
1 TAATTATATT
106273691 ACAAGATTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
18 5 0.13
19 2 0.05
20 6 0.15
21 18 0.46
22 7 0.18
23 1 0.03
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (21 bp):
TAATTATATTTATTAATTAAA
Found at i:106275238 original size:18 final size:18
Alignment explanation
Indices: 106275127--106275226 Score: 56
Period size: 18 Copynumber: 5.6 Consensus size: 18
106275117 TAAATAAAAG
* * *
106275127 TACTGAATGACTGACTGT
1 TACTGAATAACTAATTGT
* * * *
106275145 TACTAAATAATTTATAGT
1 TACTGAATAACTAATTGT
* *
106275163 TACTGAATAACTGATTGC
1 TACTGAATAACTAATTGT
* ** * * *
106275181 TACGGAGCAAATGATTAT
1 TACTGAATAACTAATTGT
*
106275199 TACTGAATAACTAATTGC
1 TACTGAATAACTAATTGT
106275217 TACTGAATAA
1 TACTGAATAA
106275227 TTGAATGTTA
Statistics
Matches: 58, Mismatches: 24, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
18 58 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (18 bp):
TACTGAATAACTAATTGT
Found at i:106275238 original size:36 final size:36
Alignment explanation
Indices: 106275161--106275238 Score: 93
Period size: 36 Copynumber: 2.2 Consensus size: 36
106275151 ATAATTTATA
* * *
106275161 GTTACTGAATAACTGATTGCTACGGAGCAAATGATT
1 GTTACTGAATAACTAATTGCTACGGAACAAATGAAT
* * * *
106275197 ATTACTGAATAACTAATTGCTACTGAATAATTGAAT
1 GTTACTGAATAACTAATTGCTACGGAACAAATGAAT
106275233 GTTACT
1 GTTACT
106275239 AAGTGAAACT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.35
Consensus pattern (36 bp):
GTTACTGAATAACTAATTGCTACGGAACAAATGAAT
Found at i:106283790 original size:16 final size:17
Alignment explanation
Indices: 106283764--106283795 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
106283754 TAATAAGAAA
106283764 TAATAATTATAATAATT
1 TAATAATTATAATAATT
106283781 TAATAA-TATAATAAT
1 TAATAATTATAATAAT
106283796 ATATATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATAATTATAATAATT
Found at i:106285611 original size:20 final size:20
Alignment explanation
Indices: 106285582--106285621 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
106285572 GACCTGGCCC
106285582 CACGGCCATGTCCCAAGCCA
1 CACGGCCATGTCCCAAGCCA
* *
106285602 CACGGGCATGTCCCAGGCCA
1 CACGGCCATGTCCCAAGCCA
106285622 TACGAGCGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.42, G:0.25, T:0.10
Consensus pattern (20 bp):
CACGGCCATGTCCCAAGCCA
Found at i:106287189 original size:11 final size:12
Alignment explanation
Indices: 106287162--106287191 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
106287152 GCTAAAGGCT
106287162 CCTTAAAGGTGG
1 CCTTAAAGGTGG
106287174 CCTTAAAGGTGG
1 CCTTAAAGGTGG
106287186 -CTTAAA
1 CCTTAAA
106287192 TGTCTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.33
12 12 0.67
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (12 bp):
CCTTAAAGGTGG
Found at i:106288189 original size:16 final size:16
Alignment explanation
Indices: 106288168--106288221 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
106288158 CATTCCATTG
106288168 ATTATAGTTCTATTCC
1 ATTATAGTTCTATTCC
*** **
106288184 ATTATAACCCTATTAT
1 ATTATAGTTCTATTCC
*
106288200 ATTACAGTTCTATTCC
1 ATTATAGTTCTATTCC
106288216 ATTATA
1 ATTATA
106288222 ATGAACCAAA
Statistics
Matches: 26, Mismatches: 12, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.46
Consensus pattern (16 bp):
ATTATAGTTCTATTCC
Found at i:106290552 original size:2 final size:2
Alignment explanation
Indices: 106290545--106290569 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
106290535 TCCTTGATTT
106290545 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
106290570 TTTTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106291757 original size:46 final size:48
Alignment explanation
Indices: 106291653--106291924 Score: 185
Period size: 46 Copynumber: 5.7 Consensus size: 48
106291643 GGTTATTGTG
* * * * *
106291653 AGCTAGTGTAAGACCATGTCTGGGCCATGGCATCGGCATTGAGACG-A
1 AGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTA
*
106291700 GTGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGTA
1 -AGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTA
* *
106291747 AGCTAATGTAAGA-CATTTCT-GAGACAT-GCATCGG-CTACGAGATGT-
1 AGCTAGTGTAAGACCATGTCTAG-GACATGGCATCGGCCT-CGAGATGTA
* * * * *
106291792 -GTTAGTGTAAAACCATGTCTAAGACATGGCATCGGCAC-GGATATGTGA
1 AGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC-CTCGAGATGT-A
** * *
106291840 GAGCTAGTGTAAGACCATGTCT-GGAACATGGTGTCGGCCTTC-A-TTTTGA
1 -AGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCC-TCGAGATGT-A
*
106291889 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -AGCT-AGTGTAAGACCATGTCTAGGACATGGCATCG
106291925 ACATTATACC
Statistics
Matches: 180, Mismatches: 27, Indels: 33
0.75 0.11 0.14
Matches are distributed among these distances:
44 9 0.05
45 14 0.08
46 64 0.36
47 13 0.07
48 14 0.08
49 34 0.19
50 32 0.18
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
AGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTA
Found at i:106293599 original size:22 final size:22
Alignment explanation
Indices: 106293546--106293590 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
106293536 ATTACTTGTA
106293546 AGAGGACTTATTAATGTTAAGG
1 AGAGGACTTATTAATGTTAAGG
106293568 AGAGGACTTATTAATGTTAAGG
1 AGAGGACTTATTAATGTTAAGG
106293590 A
1 A
106293591 TATATCTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (22 bp):
AGAGGACTTATTAATGTTAAGG
Found at i:106299005 original size:46 final size:46
Alignment explanation
Indices: 106298938--106299026 Score: 160
Period size: 46 Copynumber: 1.9 Consensus size: 46
106298928 AAACTTTAAG
* *
106298938 TCAAGTAGGCTATGAGTAAATGGACATTTGAATCCGACACAATAAC
1 TCAAGTAGGCTATGAGTAAATGGAAATTTGAATCCAACACAATAAC
106298984 TCAAGTAGGCTATGAGTAAATGGAAATTTGAATCCAACACAAT
1 TCAAGTAGGCTATGAGTAAATGGAAATTTGAATCCAACACAAT
106299027 TTGACATTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (46 bp):
TCAAGTAGGCTATGAGTAAATGGAAATTTGAATCCAACACAATAAC
Found at i:106306446 original size:46 final size:46
Alignment explanation
Indices: 106306344--106306513 Score: 232
Period size: 46 Copynumber: 3.6 Consensus size: 46
106306334 TTTGACATGA
* * * * * *
106306344 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTATGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTA--CA--CATTTCATATCAGGT
*
106306394 TGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
106306440 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
106306486 TGCCATGGTATCTTTCAACCATGGTCTT
1 TGCCATGGTATCTTTCAACCATGGTCTT
106306514 TATTTTCAAT
Statistics
Matches: 110, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
46 83 0.75
48 2 0.02
50 25 0.23
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:106308290 original size:19 final size:19
Alignment explanation
Indices: 106308266--106308302 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
106308256 CAATTTTTCC
106308266 TTTTTTCCTTCTTTCCTTT
1 TTTTTTCCTTCTTTCCTTT
* *
106308285 TTTTTTTCTTTTTTCCTT
1 TTTTTTCCTTCTTTCCTT
106308303 CCTTCTTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTTCCTTCTTTCCTTT
Found at i:106308368 original size:12 final size:10
Alignment explanation
Indices: 106308343--106308383 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
106308333 CGCTTCATCC
106308343 TTTCTTTCTT
1 TTTCTTTCTT
106308353 TTTCTATTCTT
1 TTTCT-TTCTT
*
106308364 TTT-TCT-TT
1 TTTCTTTCTT
106308372 TTTCTTTCTT
1 TTTCTTTCTT
106308382 TT
1 TT
106308384 ACTATATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
8 5 0.19
9 3 0.12
10 10 0.38
11 8 0.31
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:106308370 original size:18 final size:18
Alignment explanation
Indices: 106308342--106308383 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
106308332 TCGCTTCATC
106308342 CTTTCTTTC-TTTTTCTATT
1 CTTT-TTTCTTTTTTCT-TT
106308361 CTTTTTTCTTTTTTCTTT
1 CTTTTTTCTTTTTTCTTT
106308379 CTTTT
1 CTTTT
106308384 ACTATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (18 bp):
CTTTTTTCTTTTTTCTTT
Found at i:106309902 original size:16 final size:16
Alignment explanation
Indices: 106309881--106309912 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
106309871 TGATCCTAAC
106309881 TTCTTCATACATTTGT
1 TTCTTCATACATTTGT
106309897 TTCTTCATACATTTGT
1 TTCTTCATACATTTGT
106309913 CAATATCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.56
Consensus pattern (16 bp):
TTCTTCATACATTTGT
Found at i:106315170 original size:24 final size:24
Alignment explanation
Indices: 106315123--106315170 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
106315113 CATATTTAAA
** *
106315123 TTATAAATAAAATATTAATTAACT
1 TTATAAATAAAATAACAATCAACT
*
106315147 TTATAAATAAAATAACACTCAACT
1 TTATAAATAAAATAACAATCAACT
106315171 AGAATTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.35
Consensus pattern (24 bp):
TTATAAATAAAATAACAATCAACT
Found at i:106333359 original size:122 final size:120
Alignment explanation
Indices: 106333144--106333367 Score: 331
Period size: 122 Copynumber: 1.9 Consensus size: 120
106333134 CACAATAACA
* * * *
106333144 ATGAGAATGAGAATAGAAATGTAATGGGTATGAGGTTTTTCTAATCTCAATTTAACACGGAATGT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATCTCAATTTAACACGAAATGT
* *
106333209 ATGATAACTAACCTAGGAATGCAAATTAAATGATAGATATTGGCATGGTAATAGC
66 ATGATAACTAACCTAAGAATACAAATTAAATGATAGATATTGGCATGGTAATAGC
* * * **
106333264 ATGAGAATAAGTATAGTAATGTCATGGGTATGAGGTGTTCCTAATAACTTGATTTAACACGAAAT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAAT--CTCAATTTAACACGAAAT
106333329 GTATGATAACTAACCTAAGAATACAAATTAAATGATAGA
64 GTATGATAACTAACCTAAGAATACAAATTAAATGATAGA
106333368 AAAATGAAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
120 39 0.43
122 52 0.57
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (120 bp):
ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATCTCAATTTAACACGAAATGT
ATGATAACTAACCTAAGAATACAAATTAAATGATAGATATTGGCATGGTAATAGC
Found at i:106349993 original size:39 final size:40
Alignment explanation
Indices: 106349893--106350077 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
106349883 TTGAATGATG
* * *
106349893 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
106349932 ATCCGGAG-TAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGG-GCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
106349973 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
106350012 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
106350051 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
106350078 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
39 37 0.29
40 78 0.62
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:106350029 original size:79 final size:81
Alignment explanation
Indices: 106349893--106350077 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 81
106349883 TTGAATGATG
*
106349893 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGAGTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGAGTAAGATCCGAAGGCATT
106349957 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * *
106349972 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-GTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGAG-TAAGAT-CCGAAGGC
*
106350033 ATTTGTGCGAGTTACTATA
63 ATTTGTGCGAGATACTATA
* *
106350052 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
106350078 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
78 2 0.02
79 58 0.62
80 33 0.35
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGAGTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:106350099 original size:79 final size:79
Alignment explanation
Indices: 106349946--106350100 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
106349936 GGAGTAAGAT
* **
106349946 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
106350011 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
106350025 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
106350088 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
106350101 ATTCGAAGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:106352395 original size:40 final size:40
Alignment explanation
Indices: 106352328--106352437 Score: 121
Period size: 40 Copynumber: 2.8 Consensus size: 40
106352318 TCGAGAATAT
* * *
106352328 AAAGTGGATAGGATTCGTTCATAATTCACTATAATACCTC
1 AAAGTGGATAGGATTTGTTCATGATTCACTATAATAACTC
* ** * *
106352368 AAAGTGGATAGGATTTGTTCTTGATTCACTATGGTAATTT
1 AAAGTGGATAGGATTTGTTCATGATTCACTATAATAACTC
* * *
106352408 AAAGTGAATAGGATTTATTCCTGATTCACT
1 AAAGTGGATAGGATTTGTTCATGATTCACT
106352438 GCGGAAACTT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (40 bp):
AAAGTGGATAGGATTTGTTCATGATTCACTATAATAACTC
Done.