Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 320 of 362
Found at i:106653553 original size:16 final size:17
Alignment explanation
Indices: 106653532--106653566 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
106653522 TAATGTATAG
106653532 GAAAATTA-TTAATTGA
1 GAAAATTAGTTAATTGA
106653548 GAAAATTAGTTTAATTGA
1 GAAAATTAG-TTAATTGA
106653566 G
1 G
106653567 GGGTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (17 bp):
GAAAATTAGTTAATTGA
Found at i:106655524 original size:29 final size:28
Alignment explanation
Indices: 106655485--106655568 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
106655475 CACTTTGTGC
*
106655485 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTCGGA-GGATTATAT
* *
106655514 TATTCTGGTGTGTTTGGGAGGATTCTAT
1 TATTCTGGTGTGTTTCGGAGGATTATAT
* *
106655542 GATACTGGTGTGTTTCGGAGGATTATA
1 TATTCTGGTGTGTTTCGGAGGATTATA
106655569 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 31 0.63
29 18 0.37
ACGTcount: A:0.18, C:0.06, G:0.31, T:0.45
Consensus pattern (28 bp):
TATTCTGGTGTGTTTCGGAGGATTATAT
Found at i:106655803 original size:23 final size:23
Alignment explanation
Indices: 106655773--106655859 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 23
106655763 GCTTTACTGA
*
106655773 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
* *
106655796 TCAGGCACCTTGTGTGTCGCA--
1 TCAGGCACCTTATGTGTCGTATT
* **
106655817 ACAGGCACCTCGTGTGTCG--TT
1 TCAGGCACCTTATGTGTCGTATT
106655838 TCAGGCA-CTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
106655860 CTGATCAGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
20 9 0.17
21 23 0.44
22 2 0.04
23 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:106657416 original size:31 final size:31
Alignment explanation
Indices: 106657381--106657448 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
106657371 TTCTATTTTA
106657381 ATATGTTGGAAATGAAGTTAATGGTAAAAAT
1 ATATGTTGGAAATGAAGTTAATGGTAAAAAT
106657412 ATATGTTGGAAATGAAGTTAATGGTAAAAAT
1 ATATGTTGGAAATGAAGTTAATGGTAAAAAT
*
106657443 TTATGT
1 ATATGT
106657449 GAGACTATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (31 bp):
ATATGTTGGAAATGAAGTTAATGGTAAAAAT
Found at i:106659007 original size:16 final size:17
Alignment explanation
Indices: 106658986--106659020 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
106658976 TAATGTCTAG
106658986 GAAAATTA-TTAATTGA
1 GAAAATTAGTTAATTGA
106659002 GAAAATTAGTTTAATTGA
1 GAAAATTAG-TTAATTGA
106659020 G
1 G
106659021 GGGTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (17 bp):
GAAAATTAGTTAATTGA
Found at i:106661702 original size:12 final size:12
Alignment explanation
Indices: 106661685--106661719 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
106661675 ACCATTAATA
*
106661685 AATAAATGAGTC
1 AATAAATGAGCC
106661697 AATAAATGAGCC
1 AATAAATGAGCC
106661709 AATAAATGAGC
1 AATAAATGAGC
106661720 TTGTTCGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.20
Consensus pattern (12 bp):
AATAAATGAGCC
Found at i:106667720 original size:60 final size:60
Alignment explanation
Indices: 106667627--106667751 Score: 250
Period size: 60 Copynumber: 2.1 Consensus size: 60
106667617 TGTAGTTCAC
106667627 TGAGCATTGAGCTCAATTCCTTATCCTCACATCTAGTACGGGTGAGTTTGGATGAGTTAT
1 TGAGCATTGAGCTCAATTCCTTATCCTCACATCTAGTACGGGTGAGTTTGGATGAGTTAT
106667687 TGAGCATTGAGCTCAATTCCTTATCCTCACATCTAGTACGGGTGAGTTTGGATGAGTTAT
1 TGAGCATTGAGCTCAATTCCTTATCCTCACATCTAGTACGGGTGAGTTTGGATGAGTTAT
106667747 TGAGC
1 TGAGC
106667752 GTGGTGCGAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (60 bp):
TGAGCATTGAGCTCAATTCCTTATCCTCACATCTAGTACGGGTGAGTTTGGATGAGTTAT
Found at i:106668969 original size:29 final size:30
Alignment explanation
Indices: 106668935--106668991 Score: 107
Period size: 29 Copynumber: 1.9 Consensus size: 30
106668925 AAATACTTAG
106668935 AATTTAAAGGGTTAA-AGTGTAAATATAAA
1 AATTTAAAGGGTTAATAGTGTAAATATAAA
106668964 AATTTAAAGGGTTAATAGTGTAAATATA
1 AATTTAAAGGGTTAATAGTGTAAATATA
106668992 TTAAGAGTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (30 bp):
AATTTAAAGGGTTAATAGTGTAAATATAAA
Found at i:106669237 original size:23 final size:24
Alignment explanation
Indices: 106669200--106669244 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
106669190 TGGATAAAAT
106669200 AATATTTTATAAATATTTTATTTA
1 AATATTTTATAAATATTTTATTTA
*
106669224 AATA-TTTATTAATATTTTATT
1 AATATTTTATAAATATTTTATT
106669245 AATTTAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
AATATTTTATAAATATTTTATTTA
Found at i:106669244 original size:11 final size:11
Alignment explanation
Indices: 106669199--106669247 Score: 64
Period size: 11 Copynumber: 4.4 Consensus size: 11
106669189 ATGGATAAAA
106669199 TAATATTTTAT
1 TAATATTTTAT
*
106669210 AAATATTTTATT
1 TAATATTTTA-T
106669222 TAA-ATATTTAT
1 TAATAT-TTTAT
106669233 TAATATTTTAT
1 TAATATTTTAT
106669244 TAAT
1 TAAT
106669248 TTAATATTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 24 0.73
12 9 0.27
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TAATATTTTAT
Found at i:106670772 original size:27 final size:27
Alignment explanation
Indices: 106670742--106670798 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
106670732 GGAATTAAAC
106670742 TTAGTGTGATTTTTTAGTACAATAATT
1 TTAGTGTGATTTTTTAGTACAATAATT
106670769 TTAGTGTGATTTTTTAGTACAATAATT
1 TTAGTGTGATTTTTTAGTACAATAATT
106670796 TTA
1 TTA
106670799 CTCTTGTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.04, G:0.14, T:0.53
Consensus pattern (27 bp):
TTAGTGTGATTTTTTAGTACAATAATT
Found at i:106671098 original size:10 final size:9
Alignment explanation
Indices: 106671063--106671095 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
106671053 TGATTTTTTC
*
106671063 ATTTTTAAT
1 ATTTTTAAA
106671072 ATTTTTAAA
1 ATTTTTAAA
106671081 ATTTTTAAA
1 ATTTTTAAA
106671090 ATTTTT
1 ATTTTT
106671096 TAATAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:106671111 original size:12 final size:11
Alignment explanation
Indices: 106671064--106671111 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 11
106671054 GATTTTTTCA
106671064 TTTTTAAT-A-
1 TTTTTAATAAT
106671073 TTTTTAA-AA-
1 TTTTTAATAAT
106671082 TTTTTAA-AAT
1 TTTTTAATAAT
106671092 TTTTTAATAAT
1 TTTTTAATAAT
106671103 TTATTTAAT
1 TT-TTTAAT
106671112 TAAGCCCGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
9 17 0.49
10 7 0.20
11 5 0.14
12 6 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTTAATAAT
Found at i:106677350 original size:13 final size:12
Alignment explanation
Indices: 106677330--106677367 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 12
106677320 TGTACTTATC
106677330 TCATTCATTCAA
1 TCATTCATTCAA
*
106677342 TCAATTCATACAA
1 TC-ATTCATTCAA
106677355 TCA-TCATTCAA
1 TCATTCATTCAA
106677366 TC
1 TC
106677368 TCAATCAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 9 0.39
12 3 0.13
13 11 0.48
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (12 bp):
TCATTCATTCAA
Found at i:106678360 original size:24 final size:25
Alignment explanation
Indices: 106678333--106678436 Score: 101
Period size: 24 Copynumber: 4.2 Consensus size: 25
106678323 CATCGTATTT
* *
106678333 GCTCTTTCGAGCT-ATGATCGGTAA
1 GCTCTTTCGAGCTGATGAACAGTAA
*
106678357 GCTCTTTCTGAGTTGATGAACAGTAA
1 GCTCTTTC-GAGCTGATGAACAGTAA
*
106678383 GCTCTATT-GAGCTGA-AAACAGTAA
1 GCTCT-TTCGAGCTGATGAACAGTAA
*
106678407 GCT-TTGACGAGCTGA-GAACAGTAA
1 GCTCTT-TCGAGCTGATGAACAGTAA
106678431 GCTCTT
1 GCTCTT
106678437 AGGAGCTAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 37 0.55
25 12 0.18
26 14 0.21
27 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (25 bp):
GCTCTTTCGAGCTGATGAACAGTAA
Found at i:106678442 original size:24 final size:24
Alignment explanation
Indices: 106678353--106678470 Score: 89
Period size: 24 Copynumber: 4.8 Consensus size: 24
106678343 GCTATGATCG
* *
106678353 GTAAGCTCTTTCTGAGTTGATGAACA
1 GTAAGCTCTTAC-GAGCTGA-GAACA
* *
106678379 GTAAGCTC-TATTGAGCTGAAAACA
1 GTAAGCTCTTA-CGAGCTGAGAACA
106678403 GTAAGCT-TTGACGAGCTGAGAACA
1 GTAAGCTCTT-ACGAGCTGAGAACA
* * *
106678427 GTAAGCTCTTAGGAGCTAATATATCA
1 GTAAGCTCTTACGAGCTGAGA-A-CA
106678453 GTAAGCT-TATACGAGCTG
1 GTAAGCTCT-TACGAGCTG
106678471 CAGTGAGTCC
Statistics
Matches: 74, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
24 38 0.51
25 12 0.16
26 24 0.32
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (24 bp):
GTAAGCTCTTACGAGCTGAGAACA
Found at i:106678443 original size:48 final size:50
Alignment explanation
Indices: 106678374--106678470 Score: 123
Period size: 48 Copynumber: 2.0 Consensus size: 50
106678364 CTGAGTTGAT
*
106678374 GAACAGTAAGCTCTATTGAGCTGAA-A-A-CAGTAAGCTT-TGACGAGCTGA
1 GAACAGTAAGCTCTATGGAGCT-AATATATCAGTAAGCTTAT-ACGAGCTGA
106678422 GAACAGTAAGCTCT-TAGGAGCTAATATATCAGTAAGCTTATACGAGCTG
1 GAACAGTAAGCTCTAT-GGAGCTAATATATCAGTAAGCTTATACGAGCTG
106678471 CAGTGAGTCC
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
47 3 0.07
48 20 0.47
49 1 0.02
50 18 0.42
51 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (50 bp):
GAACAGTAAGCTCTATGGAGCTAATATATCAGTAAGCTTATACGAGCTGA
Found at i:106982377 original size:27 final size:27
Alignment explanation
Indices: 106982339--106982390 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
106982329 GTACGTGGTC
* *
106982339 GCTCCAAAGGGACGTCTGAGGGTAGTG
1 GCTCCAAAGGGACCTCTGAGCGTAGTG
106982366 GCTCCAAAGGGACCTCTGAGCGTAG
1 GCTCCAAAGGGACCTCTGAGCGTAG
106982391 AGCAAGGCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.17
Consensus pattern (27 bp):
GCTCCAAAGGGACCTCTGAGCGTAGTG
Found at i:107001322 original size:84 final size:84
Alignment explanation
Indices: 107001181--107001365 Score: 293
Period size: 84 Copynumber: 2.2 Consensus size: 84
107001171 AAAAAGAATA
*
107001181 TATGGAAAATAGAGAATCAAATATGGGAAGTGAAAGAGAATAACATATATGAAAAATAGAGATAT
1 TATGGAAAATAGAGAATCAAATATGGGAAGTAAAAGAGAATAACATATATGAAAAATAGAGATAT
*
107001246 GAAAGGAAATTTAATATTT
66 GAAAGGAAATTGAATATTT
* *
107001265 TATGGAAAATAGATAATCAAATATGGGAAAG-AAAAGAGAATAACA-ATTATGTAAAATAGAGAT
1 TATGGAAAATAGAGAATCAAATATGGG-AAGTAAAAGAGAATAACATA-TATGAAAAATAGAGAT
107001328 ATGAAAGGAAATTGAATATTT
64 ATGAAAGGAAATTGAATATTT
*
107001349 TATGAAAAATAGAGAAT
1 TATGGAAAATAGAGAAT
107001366 TTGATACTCT
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
83 1 0.01
84 89 0.96
85 3 0.03
ACGTcount: A:0.54, C:0.02, G:0.19, T:0.25
Consensus pattern (84 bp):
TATGGAAAATAGAGAATCAAATATGGGAAGTAAAAGAGAATAACATATATGAAAAATAGAGATAT
GAAAGGAAATTGAATATTT
Found at i:107001358 original size:37 final size:37
Alignment explanation
Indices: 107001228--107001363 Score: 101
Period size: 37 Copynumber: 3.4 Consensus size: 37
107001218 GAATAACATA
*
107001228 TATGAAAAATAGAGATATGAAAGGAAATTTAATATTT
1 TATGAAAAATAGAGATATGAAAGGAAATTGAATATTT
* * * ** **
107001265 TATGGAAAATAGATAATCAAATATGGGAAAGAAAAGAGAATAACAAT
1 TAT-G-AAA-A-AT-A-GAGATAT--GAAAGGAAATTGAAT-A-TTT
*
107001312 TATGTAAAATAGAGATATGAAAGGAAATTGAATATTT
1 TATGAAAAATAGAGATATGAAAGGAAATTGAATATTT
107001349 TATGAAAAATAGAGA
1 TATGAAAAATAGAGA
107001364 ATTTGATACT
Statistics
Matches: 72, Mismatches: 17, Indels: 20
0.66 0.16 0.18
Matches are distributed among these distances:
37 18 0.25
38 2 0.03
39 15 0.21
40 1 0.01
41 7 0.10
42 2 0.03
43 7 0.10
44 1 0.01
45 13 0.18
46 2 0.03
47 4 0.06
ACGTcount: A:0.54, C:0.01, G:0.18, T:0.26
Consensus pattern (37 bp):
TATGAAAAATAGAGATATGAAAGGAAATTGAATATTT
Found at i:107001703 original size:19 final size:18
Alignment explanation
Indices: 107001670--107001708 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
107001660 ATTTCAACTG
107001670 TTTCTTTTCAACTTTTTT
1 TTTCTTTTCAACTTTTTT
*
107001688 TTTCTATTTCACCTTTTTT
1 TTTCT-TTTCAACTTTTTT
107001707 TT
1 TT
107001709 ATTAAATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTCTTTTCAACTTTTTT
Found at i:107002180 original size:26 final size:27
Alignment explanation
Indices: 107002151--107002217 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 27
107002141 CTAGTTTGGC
*
107002151 AATGCTTTTGAAAAGTGCTGTGGAA-A
1 AATGCTTTTGAAAAGTACTGTGGAAGA
* * *
107002177 AATGCTTTTGAGAAGTACTTTTGAAGA
1 AATGCTTTTGAAAAGTACTGTGGAAGA
*
107002204 AGTGCTTTTGAAAA
1 AATGCTTTTGAAAA
107002218 ATTTAGTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 21 0.62
27 13 0.38
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34
Consensus pattern (27 bp):
AATGCTTTTGAAAAGTACTGTGGAAGA
Found at i:107002206 original size:14 final size:14
Alignment explanation
Indices: 107002181--107002215 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
107002171 TGGAAAAATG
107002181 CTTTTG-AGAAGTA
1 CTTTTGAAGAAGTA
*
107002194 CTTTTGAAGAAGTG
1 CTTTTGAAGAAGTA
107002208 CTTTTGAA
1 CTTTTGAA
107002216 AAATTTAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (14 bp):
CTTTTGAAGAAGTA
Found at i:107004134 original size:21 final size:21
Alignment explanation
Indices: 107004091--107004130 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
107004081 CAGACAACGC
107004091 ATTCATGTATTAAAATATAAT
1 ATTCATGTATTAAAATATAAT
*
107004112 ATTCAT-TATTAATATATAA
1 ATTCATGTATTAAAATATAA
107004131 ATATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (21 bp):
ATTCATGTATTAAAATATAAT
Found at i:107011521 original size:16 final size:15
Alignment explanation
Indices: 107011500--107011571 Score: 63
Period size: 16 Copynumber: 4.5 Consensus size: 15
107011490 CGTTTGGTTC
107011500 ACTGTAATGGAATATG
1 ACTGTAATGGAATA-G
*
107011516 ACTGTAATTGAATAG
1 ACTGTAATGGAATAG
* *
107011531 AGCTGTAATGAAATAA
1 A-CTGTAATGGAATAG
* *
107011547 AGCTGTAGTGAAATAG
1 A-CTGTAATGGAATAG
107011563 AGCTGTAAT
1 A-CTGTAAT
107011572 AAGTAATTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
15 2 0.04
16 46 0.96
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (15 bp):
ACTGTAATGGAATAG
Found at i:107013818 original size:26 final size:26
Alignment explanation
Indices: 107013788--107013837 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
107013778 ATATATTCTA
107013788 AACTT-CTTATTAATTACTTTTAAATT
1 AACTTACTTATTAATTA-TTTTAAATT
* *
107013814 AACTTATTTATTATTTATTTTAAA
1 AACTTACTTATTAATTATTTTAAA
107013838 ACTATTCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (26 bp):
AACTTACTTATTAATTATTTTAAATT
Found at i:107016949 original size:32 final size:32
Alignment explanation
Indices: 107016908--107016972 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
107016898 TTGCAATTTA
*
107016908 TTTTATATTTTCCCTTGGCCTTTACATCTATC
1 TTTTATATTTGCCCTTGGCCTTTACATCTATC
*
107016940 TTTTATATTTGCCCTTGGTCTTTACATCTATC
1 TTTTATATTTGCCCTTGGCCTTTACATCTATC
107016972 T
1 T
107016973 CGTCATCTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54
Consensus pattern (32 bp):
TTTTATATTTGCCCTTGGCCTTTACATCTATC
Found at i:107017191 original size:12 final size:12
Alignment explanation
Indices: 107017174--107017200 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
107017164 TAGATTTATA
107017174 CAAAACAATACC
1 CAAAACAATACC
107017186 CAAAACAATACC
1 CAAAACAATACC
107017198 CAA
1 CAA
107017201 TAATTATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.33, G:0.00, T:0.07
Consensus pattern (12 bp):
CAAAACAATACC
Found at i:107020245 original size:40 final size:40
Alignment explanation
Indices: 107020192--107020297 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
107020182 AAATAGGTGA
* *
107020192 AAAAGAAGGAGAAGGGTGGAACGAAATGGGAATCAGACTG
1 AAAAGAGGGAGAAGGGTGGAACGAAATAGGAATCAGACTG
*
107020232 AAAAGAGGGAGAAGGGTGGAAAGAAATAGGAATCAGACTG
1 AAAAGAGGGAGAAGGGTGGAACGAAATAGGAATCAGACTG
*
107020272 AAAAGAGGGAAAAGGGTGGAACGAAA
1 AAAAGAGGGAGAAGGGTGGAACGAAA
107020298 GAAGGAGAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.48, C:0.06, G:0.38, T:0.08
Consensus pattern (40 bp):
AAAAGAGGGAGAAGGGTGGAACGAAATAGGAATCAGACTG
Found at i:107021457 original size:46 final size:46
Alignment explanation
Indices: 107021389--107021897 Score: 707
Period size: 46 Copynumber: 11.0 Consensus size: 46
107021379 TTATCTTTGA
* * * * * * *
107021389 CATGATGCCATAGTGTCATTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** ***
107021435 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
**
107021482 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * ***
107021528 CACGCTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* *
107021574 CATGTTGCCATTGTATCTTTCAACCATGGTCCTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
107021620 CATGTTGCCATGGTATCTTTCAACCATGGTCCTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
107021666 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
107021712 TAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
107021758 CAGGTTGCCATGGTATTTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
107021804 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
107021850 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
107021896 CA
1 CA
107021898 GAGAGCACAC
Statistics
Matches: 429, Mismatches: 31, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.01
46 382 0.89
47 43 0.10
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:107024066 original size:21 final size:20
Alignment explanation
Indices: 107024027--107024076 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
107024017 ATAATATAAT
107024027 TATTTAAT-TAATAAATATC
1 TATTTAATATAATAAATATC
*
107024046 TTTTATAATATAATAAATATC
1 TATT-TAATATAATAAATATC
107024067 TATTTAATAT
1 TATTTAATAT
107024077 CTAATACATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 3 0.11
20 10 0.37
21 14 0.52
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTTAATATAATAAATATC
Found at i:107043000 original size:46 final size:46
Alignment explanation
Indices: 107042947--107043122 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
107042937 TATTTGGGCA
*
107042947 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
107042993 TCCGAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* * *
107043038 CATCAGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
107043086 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
107043123 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
45 1 0.01
46 62 0.57
47 26 0.24
48 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:107049313 original size:23 final size:23
Alignment explanation
Indices: 107049283--107049369 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
107049273 GCTTTACTGA
*
107049283 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
* *
107049306 TCAGGCACCTTGTGTGTTGTA--
1 TCAGGCACCTTATGTGTCGTATT
**
107049327 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTTATGTGTCGTATT
*
107049349 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTTATGTGTCGTAT
107049370 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
21 33 0.62
22 2 0.04
23 18 0.34
ACGTcount: A:0.15, C:0.20, G:0.25, T:0.40
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:107056675 original size:17 final size:19
Alignment explanation
Indices: 107056653--107056688 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
107056643 TATTTACATT
107056653 TCAT-AAAATT-TAAAAAA
1 TCATAAAAATTATAAAAAA
107056670 TCATAAAAATTATAAAAAA
1 TCATAAAAATTATAAAAAA
107056689 AATATTCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 6 0.35
19 7 0.41
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (19 bp):
TCATAAAAATTATAAAAAA
Found at i:107057449 original size:24 final size:24
Alignment explanation
Indices: 107057404--107057450 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
107057394 ATATTATATT
* *
107057404 TTTTTATTTTATATGTTCAATTAC
1 TTTTAATTTTATATATTCAATTAC
* *
107057428 TTTTAATTTTATTTATTTAATTA
1 TTTTAATTTTATATATTCAATTA
107057451 AATATTTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (24 bp):
TTTTAATTTTATATATTCAATTAC
Found at i:107067273 original size:10 final size:10
Alignment explanation
Indices: 107067258--107067330 Score: 60
Period size: 10 Copynumber: 7.1 Consensus size: 10
107067248 TGTTCTATAA
107067258 TTTTTAAATT
1 TTTTTAAATT
107067268 TTTTT-AATT
1 TTTTTAAATT
*
107067277 TTCTTTATATAT
1 TT-TTTAAAT-T
107067289 TTTTTAGAA-T
1 TTTTTA-AATT
107067299 TTTTTAGAATT
1 TTTTTA-AATT
* *
107067310 TTTATAAATA
1 TTTTTAAATT
*
107067320 TTTTAAAATT
1 TTTTTAAATT
107067330 T
1 T
107067331 AAAAAGTATT
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
9 6 0.12
10 29 0.57
11 12 0.24
12 4 0.08
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTTTAAATT
Found at i:107067321 original size:32 final size:31
Alignment explanation
Indices: 107067258--107067323 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
107067248 TGTTCTATAA
* * *
107067258 TTTTTAAATTTTTTTAATTTTCTTTATATAT
1 TTTTTAAATTTTTTGAATTTTCTATAAATAT
107067289 TTTTTAGAATTTTTTAGAATTTT-TATAAATAT
1 TTTTTA-AATTTTTT-GAATTTTCTATAAATAT
107067321 TTT
1 TTT
107067324 AAAATTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 6 0.20
32 18 0.60
33 6 0.20
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.67
Consensus pattern (31 bp):
TTTTTAAATTTTTTGAATTTTCTATAAATAT
Found at i:107067370 original size:20 final size:20
Alignment explanation
Indices: 107067332--107067369 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
107067322 TTAAAATTTA
107067332 AAAAGTATTTTGAATTTTTG
1 AAAAGTATTTTGAATTTTTG
*
107067352 AAAATTATTTTG-ATTTTT
1 AAAAGTATTTTGAATTTTT
107067370 TTTTAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (20 bp):
AAAAGTATTTTGAATTTTTG
Found at i:107069204 original size:79 final size:79
Alignment explanation
Indices: 107069102--107069277 Score: 262
Period size: 79 Copynumber: 2.2 Consensus size: 79
107069092 ACTTTGAGTC
* * *
107069102 GTTGACCTCTGTAAACTCTCCCTATATAAAGATAAATATTAGATTAAATTTAATATTAAAATAAT
1 GTTGAACTCTCTAAACTCCCCCTATATAAAGATAAATATTAGATTAAATTTAATATTAAAATAAT
107069167 TAAGTTTAATCACA
66 TAAGTTTAATCACA
* * * *
107069181 GTTGAGCTCTCTAAACTCCCCCTATATAAATATAAATATTAGCTTAAATTTAATATTAAAGTAAT
1 GTTGAACTCTCTAAACTCCCCCTATATAAAGATAAATATTAGATTAAATTTAATATTAAAATAAT
* *
107069246 TAAGTTTAATTATA
66 TAAGTTTAATCACA
*
107069260 GTTGAACTTTCTAAACTC
1 GTTGAACTCTCTAAACTC
107069278 ACTCTAGGGT
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 87 1.00
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (79 bp):
GTTGAACTCTCTAAACTCCCCCTATATAAAGATAAATATTAGATTAAATTTAATATTAAAATAAT
TAAGTTTAATCACA
Found at i:107073934 original size:42 final size:42
Alignment explanation
Indices: 107073798--107073947 Score: 158
Period size: 42 Copynumber: 3.6 Consensus size: 42
107073788 CCGCTAATGG
** * *
107073798 CCCCAAAAATACCGCTAAAGGTCCTGACTTTTAGCGATGC-TT
1 CCCCAAAAACGCCGCTAAAGGTCATGA-TTTTAGCGACGCTTT
* * * *
107073840 CCCCAAAAAAGCCGCTAAAGGTCATGACTTTAGTGGCGCTTT
1 CCCCAAAAACGCCGCTAAAGGTCATGATTTTAGCGACGCTTT
* *
107073882 CCCCACAAACGCCGCTAAAGGTCATGTTTTTAGCGACGCTTT
1 CCCCAAAAACGCCGCTAAAGGTCATGATTTTAGCGACGCTTT
** * *
107073924 CCTTAAAAACGCCACTAAAAGTCA
1 CCCCAAAAACGCCGCTAAAGGTCA
107073948 CCACTATCCC
Statistics
Matches: 89, Mismatches: 18, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
41 8 0.09
42 81 0.91
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (42 bp):
CCCCAAAAACGCCGCTAAAGGTCATGATTTTAGCGACGCTTT
Found at i:107078639 original size:7 final size:7
Alignment explanation
Indices: 107078604--107078689 Score: 73
Period size: 7 Copynumber: 12.0 Consensus size: 7
107078594 ATATGGACAA
*
107078604 AAATATT
1 AAATTTT
*
107078611 AAATATT
1 AAATTTT
*
107078618 AAATATT
1 AAATTTT
107078625 AAATTTTT
1 AAA-TTTT
*
107078633 AAGTTTT
1 AAATTTT
*
107078640 AAGTTTT
1 AAATTTT
*
107078647 AAGTTTTT
1 AA-ATTTT
* *
107078655 TATTTTT
1 AAATTTT
*
107078662 AATTTTT
1 AAATTTT
107078669 AAATTTT
1 AAATTTT
107078676 AAATTTT
1 AAATTTT
107078683 AAATTTT
1 AAATTTT
107078690 TTTGAAGATT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
7 61 0.86
8 10 0.14
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (7 bp):
AAATTTT
Found at i:107078641 original size:22 final size:22
Alignment explanation
Indices: 107078609--107078742 Score: 83
Period size: 22 Copynumber: 5.7 Consensus size: 22
107078599 GACAAAAATA
* *
107078609 TTAAATATTAAATATTAAATTT
1 TTAAATTTTAAATTTTAAATTT
* * *
107078631 TTAAGTTTTAAGTTTTAAGTTT
1 TTAAATTTTAAATTTTAAATTT
* * *
107078653 TTTATTTTTAATTTTTAAA-TT
1 TTAAATTTTAAATTTTAAATTT
107078674 TTAAATTTTAAATTTTTTTGAAGATTT
1 TTAAATTTTAAA---TTTT-AA-ATTT
*
107078701 TTATAATTTTTAAATTAT-AATTT
1 TTA-AA-TTTTAAATTTTAAATTT
107078724 TTATAATTTTTATAATTTT
1 TTA-AA-TTTTA-AATTTT
107078743 TAACAGAAAT
Statistics
Matches: 89, Mismatches: 14, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
21 11 0.12
22 32 0.36
23 16 0.18
24 10 0.11
25 2 0.02
26 4 0.04
27 5 0.06
28 2 0.02
29 7 0.08
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
TTAAATTTTAAATTTTAAATTT
Found at i:107078709 original size:9 final size:9
Alignment explanation
Indices: 107078657--107078744 Score: 70
Period size: 9 Copynumber: 10.6 Consensus size: 9
107078647 AAGTTTTTTA
107078657 TTTT-TAAT
1 TTTTATAAT
107078665 TTTTA-AA-
1 TTTTATAAT
107078672 TTTTA-AA-
1 TTTTATAAT
107078679 TTTTA-AAT
1 TTTTATAAT
*
107078687 TTTTTTGAAGAT
1 TTTTAT--A-AT
107078699 TTTTATAAT
1 TTTTATAAT
107078708 TTTTA-AA-
1 TTTTATAAT
107078715 --TTATAAT
1 TTTTATAAT
107078722 TTTTATAAT
1 TTTTATAAT
107078731 TTTTATAAT
1 TTTTATAAT
107078740 TTTTA
1 TTTTA
107078745 ACAGAAATAA
Statistics
Matches: 68, Mismatches: 2, Indels: 19
0.76 0.02 0.21
Matches are distributed among these distances:
5 3 0.04
6 2 0.03
7 14 0.21
8 12 0.18
9 28 0.41
10 1 0.01
11 1 0.01
12 7 0.10
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:107079451 original size:20 final size:21
Alignment explanation
Indices: 107079404--107079586 Score: 66
Period size: 21 Copynumber: 8.6 Consensus size: 21
107079394 AACTCCTAAC
*
107079404 CCCTAAACCATAATCCCTAAA
1 CCCTAAACCATAATCCATAAA
* * *
107079425 TCATAAA-CATAATCTATAAA
1 CCCTAAACCATAATCCATAAA
** *
107079445 CCCTAAAAACC-TAAAAC-TTAA
1 CCCT--AAACCATAATCCATAAA
* * * *
107079466 CCCATAACCCCTAAGCCTTAAA
1 CCC-TAAACCATAATCCATAAA
* * * * *
107079488 CCCCAACCCATAAACCCTAAT
1 CCCTAAACCATAATCCATAAA
107079509 CCCTAAACTCATAATCCATAAA
1 CCCTAAAC-CATAATCCATAAA
* ** * *
107079531 CCTTAAAATAGTAACCCATACA
1 CCCTAAACCA-TAATCCATAAA
** * * *
107079553 CTTTAAACCCTAAACCATATA
1 CCCTAAACCATAATCCATAAA
107079574 CCCTAAACCATAA
1 CCCTAAACCATAA
107079587 ACTCTAAACT
Statistics
Matches: 116, Mismatches: 38, Indels: 16
0.68 0.22 0.09
Matches are distributed among these distances:
20 17 0.15
21 54 0.47
22 44 0.38
23 1 0.01
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.21
Consensus pattern (21 bp):
CCCTAAACCATAATCCATAAA
Found at i:107079578 original size:14 final size:14
Alignment explanation
Indices: 107079404--107079600 Score: 96
Period size: 14 Copynumber: 13.9 Consensus size: 14
107079394 AACTCCTAAC
*
107079404 CCCTAAACCATAAT
1 CCCTAAACCATAAA
*
107079418 CCCTAAATCATAAA
1 CCCTAAACCATAAA
* * *
107079432 -CATAATCTATAAA
1 CCCTAAACCATAAA
107079445 CCCTAAAAACC-TAAA
1 CCCT--AAACCATAAA
* * * *
107079460 ACTTAACCCATAAC
1 CCCTAAACCATAAA
* *
107079474 CCCTAAGCCTTAAA
1 CCCTAAACCATAAA
* *
107079488 CCCCAACCCATAAA
1 CCCTAAACCATAAA
* *
107079502 CCCTAATCCCTAAA
1 CCCTAAACCATAAA
* *
107079516 CTCATAATCCATAAA
1 C-CCTAAACCATAAA
*
107079531 CCTTAAA--ATAGTAA
1 CCCTAAACCATA--AA
* **
107079545 CCCATACACTTTAAA
1 CCC-TAAACCATAAA
*
107079560 CCCTAAACCATATA
1 CCCTAAACCATAAA
107079574 CCCTAAACCATAAA
1 CCCTAAACCATAAA
* *
107079588 CTCTAAACTATAA
1 CCCTAAACCATAA
107079601 TGACAATTAA
Statistics
Matches: 135, Mismatches: 38, Indels: 20
0.70 0.20 0.10
Matches are distributed among these distances:
12 3 0.02
13 13 0.10
14 88 0.65
15 26 0.19
16 3 0.02
17 2 0.01
ACGTcount: A:0.45, C:0.32, G:0.01, T:0.22
Consensus pattern (14 bp):
CCCTAAACCATAAA
Found at i:107079859 original size:15 final size:15
Alignment explanation
Indices: 107079839--107079868 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
107079829 CCATTAAACT
*
107079839 ATAATCCCTAAACCC
1 ATAATCCATAAACCC
107079854 ATAATCCATAAACCC
1 ATAATCCATAAACCC
107079869 TAAAATAGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (15 bp):
ATAATCCATAAACCC
Found at i:107079872 original size:7 final size:7
Alignment explanation
Indices: 107079693--107079827 Score: 87
Period size: 7 Copynumber: 19.0 Consensus size: 7
107079683 ACTAATTAAT
107079693 CTAAACC
1 CTAAACC
107079700 CTAAACTC
1 CTAAAC-C
* *
107079708 TTAATCC
1 CTAAACC
*
107079715 CTAAATC
1 CTAAACC
107079722 CTAAACC
1 CTAAACC
* *
107079729 ATAAATC
1 CTAAACC
*
107079736 CTAAAAC
1 CTAAACC
*
107079743 ATAAACC
1 CTAAACC
107079750 CTAAACC
1 CTAAACC
107079757 CTAAACCC
1 CTAAA-CC
107079765 CT-AACC
1 CTAAACC
*
107079771 CTTAACCC
1 C-TAAACC
*
107079779 CTAACCC
1 CTAAACC
107079786 CT-AACAC
1 CTAAAC-C
*
107079793 TTAAACC
1 CTAAACC
*
107079800 TTAAACC
1 CTAAACC
*
107079807 TTAAACC
1 CTAAACC
*
107079814 C-CAACC
1 CTAAACC
107079820 CTTAAACC
1 C-TAAACC
107079828 ACCATTAAAC
Statistics
Matches: 101, Mismatches: 19, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
6 10 0.10
7 71 0.70
8 20 0.20
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:107080315 original size:12 final size:12
Alignment explanation
Indices: 107080290--107080322 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
107080280 TTCATTCAAA
*
107080290 CGCT-AAAACGC
1 CGCTAAAAACAC
107080301 CGCTAAAAACAC
1 CGCTAAAAACAC
107080313 CGCTAAAAAC
1 CGCTAAAAAC
107080323 CTGTTTTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.45, C:0.33, G:0.12, T:0.09
Consensus pattern (12 bp):
CGCTAAAAACAC
Found at i:107085242 original size:135 final size:138
Alignment explanation
Indices: 107084974--107085250 Score: 461
Period size: 135 Copynumber: 2.0 Consensus size: 138
107084964 ACATAGATAA
* * *
107084974 AATTAATATATTAATTTGATTCATACAAGATATTAATTGTATATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
107085039 TAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATCATTTTGGA
66 TAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATCATTTTGGA
107085104 AAGAATAT
131 AAGAATAT
*
107085112 AATTAATATATGAATTTGATTCATACAAAATGTTAATTGTATATA-TTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * * *
107085176 TAAACAGTTGTATTAATTAA-TT-GGTCAAAATATAAAAGATATGGAAATTAATATTATTTTGGA
66 TAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATCATTTTGGA
107085239 AAGAATAT
131 AAGAATAT
107085247 AATT
1 AATT
107085251 CATTTTTTCT
Statistics
Matches: 131, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
135 51 0.39
136 2 0.02
137 36 0.27
138 42 0.32
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.40
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
TAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATCATTTTGGA
AAGAATAT
Found at i:107085359 original size:74 final size:76
Alignment explanation
Indices: 107085226--107085372 Score: 237
Period size: 75 Copynumber: 2.0 Consensus size: 76
107085216 ATGGAAATTA
107085226 ATATTATTTTGGAAAGAATATAATTCATTTTTTCTAACTTTTCATTTGTCTTCTCTATTAAT-AG
1 ATATTATTTTGGAAAGAATATAATTCATTTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAG
107085290 GGAATAATGAT
66 GGAATAATGAT
* *
107085301 ATATTCTTTTGGAAATAATATAATTCA-TTTTTCTAAC-TTTCAATTTGTCTTCTCTATTAATAA
1 ATATTATTTTGGAAAGAATATAATTCATTTTTTCTAACTTTTC-ATTTGTCTTCTCTATTAATAA
*
107085364 TGGAATAAT
65 GGGAATAAT
107085373 CTTGGTTTTC
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
73 4 0.06
74 29 0.43
75 34 0.51
ACGTcount: A:0.33, C:0.10, G:0.09, T:0.48
Consensus pattern (76 bp):
ATATTATTTTGGAAAGAATATAATTCATTTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAG
GGAATAATGAT
Found at i:107095342 original size:32 final size:32
Alignment explanation
Indices: 107095300--107095366 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
107095290 GAGGTAGGTC
107095300 TTGAGATGTCAATTCGTTTACTGAAGCATTTT
1 TTGAGATGTCAATTCGTTTACTGAAGCATTTT
* *
107095332 TTGATATGTCAATTCGTTTGCTGAAGCATTTT
1 TTGAGATGTCAATTCGTTTACTGAAGCATTTT
107095364 TTG
1 TTG
107095367 CAGAATGGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.46
Consensus pattern (32 bp):
TTGAGATGTCAATTCGTTTACTGAAGCATTTT
Found at i:107095561 original size:3 final size:3
Alignment explanation
Indices: 107095553--107095599 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
107095543 TATTGATCTT
* *
107095553 TTG TTG TTG TTG TTG TTG TTA TTG TTG TTG TTG TTG TTG TTT TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
107095600 ATGATACGCC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.02, C:0.00, G:0.28, T:0.70
Consensus pattern (3 bp):
TTG
Found at i:107097777 original size:2 final size:2
Alignment explanation
Indices: 107097770--107097796 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107097760 AAAGACAACT
107097770 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
107097797 TGCTTCAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:107098067 original size:22 final size:22
Alignment explanation
Indices: 107098042--107098085 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
107098032 CTAATTAATC
*
107098042 ATAT-AATATGTATATTTTATCA
1 ATATGAATA-GTATATTGTATCA
*
107098064 ATATGAATAGTTTATTGTATCA
1 ATATGAATAGTATATTGTATCA
107098086 GCCTATACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.48
Consensus pattern (22 bp):
ATATGAATAGTATATTGTATCA
Found at i:107099448 original size:20 final size:20
Alignment explanation
Indices: 107099411--107099448 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
107099401 ATTGCACAAG
**
107099411 AATAAAATAAAAGGGATAAA
1 AATAAAATAAAAAAGATAAA
107099431 AATAAAATAAAAAAGATA
1 AATAAAATAAAAAAGATA
107099449 CAGGACGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.16
Consensus pattern (20 bp):
AATAAAATAAAAAAGATAAA
Found at i:107104732 original size:27 final size:27
Alignment explanation
Indices: 107104695--107104756 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
107104685 TAAGTTAAAC
*
107104695 ATGAGTAAGAACATAAACATGAATGCAT
1 ATGA-TAAGAACATAAACATGAATACAT
*
107104723 ATGATAAGAATATAAACATGAATACAT
1 ATGATAAGAACATAAACATGAATACAT
107104750 ATGATAA
1 ATGATAA
107104757 AATATCATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.53, C:0.08, G:0.15, T:0.24
Consensus pattern (27 bp):
ATGATAAGAACATAAACATGAATACAT
Found at i:107104826 original size:81 final size:81
Alignment explanation
Indices: 107104727--107104879 Score: 297
Period size: 81 Copynumber: 1.9 Consensus size: 81
107104717 ATGCATATGA
107104727 TAAGAATATAAACATGAATACATATGATAAAATATCATATTAGATGTTAGAATTGGCTTGGATTT
1 TAAGAATATAAACATGAATACATATGATAAAATATCATATTAGATGTTAGAATTGGCTTGGATTT
107104792 AATGCTTAAACAAGAG
66 AATGCTTAAACAAGAG
*
107104808 TAAGAATATAAACATGAATGCATATGATAAAATATCATATTAGATGTTAGAATTGGCTTGGATTT
1 TAAGAATATAAACATGAATACATATGATAAAATATCATATTAGATGTTAGAATTGGCTTGGATTT
107104873 AATGCTT
66 AATGCTT
107104880 GAATTGACTG
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.34
Consensus pattern (81 bp):
TAAGAATATAAACATGAATACATATGATAAAATATCATATTAGATGTTAGAATTGGCTTGGATTT
AATGCTTAAACAAGAG
Found at i:107108580 original size:138 final size:138
Alignment explanation
Indices: 107108331--107108610 Score: 488
Period size: 138 Copynumber: 2.0 Consensus size: 138
107108321 ACATAGATAA
* *
107108331 AATTAATATATTAATTTGATTCATACAAGATATTAATTGTATATATTTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
107108396 TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
*
107108461 AGGAATAT
131 AAGAATAT
*
107108469 AATTAATATATGAATTTGATTCATGCAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * * *
107108534 TAAACAGTTGTATTAATTAATTTCGGTCAAAATCTAAAAGATATGGAAATTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
107108599 AAGAATAT
131 AAGAATAT
107108607 AATT
1 AATT
107108611 CATTTTTTCT
Statistics
Matches: 134, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
138 134 1.00
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
AAGAATAT
Found at i:107108709 original size:75 final size:76
Alignment explanation
Indices: 107108586--107108732 Score: 251
Period size: 75 Copynumber: 1.9 Consensus size: 76
107108576 ATGGAAATTA
*
107108586 ATATTCTTTTGGAAAGAATATAATTCATTTTTTCTAACTTTCCATTTGTCTTCTCAATTAAT-AG
1 ATATTCTTTTGGAAAGAATATAATTCATTTTTTCTAACTTTCAATTTGTCTTCTCAATTAATAAG
107108650 GGAATAACGAT
66 GGAATAACGAT
* * *
107108661 ATATTCTTTTGGAGAGAATATAATTCCTTTTTTCTAACTTTCAATTTGTCTTCTCTATTAATAAG
1 ATATTCTTTTGGAAAGAATATAATTCATTTTTTCTAACTTTCAATTTGTCTTCTCAATTAATAAG
107108726 GGAATAA
66 GGAATAA
107108733 TCTTGATTTT
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
75 58 0.87
76 9 0.13
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (76 bp):
ATATTCTTTTGGAAAGAATATAATTCATTTTTTCTAACTTTCAATTTGTCTTCTCAATTAATAAG
GGAATAACGAT
Found at i:107112111 original size:11 final size:11
Alignment explanation
Indices: 107112085--107112123 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
107112075 TAACTAAATT
*
107112085 TAAAACAAAAAA
1 TAAAA-AAAAAG
107112097 TAAAAAAAAAG
1 TAAAAAAAAAG
*
107112108 TAAAAATAAAG
1 TAAAAAAAAAG
107112119 TAAAA
1 TAAAA
107112124 TTGAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 20 0.80
12 5 0.20
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (11 bp):
TAAAAAAAAAG
Found at i:107112123 original size:17 final size:18
Alignment explanation
Indices: 107112092--107112135 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
107112082 ATTTAAAACA
107112092 AAAAATAAAAAAAAAGT-
1 AAAAATAAAAAAAAAGTG
** *
107112109 AAAAATAAAGTAAAATTG
1 AAAAATAAAAAAAAAGTG
107112127 AAAAATAAA
1 AAAAATAAA
107112136 TAATGAATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (18 bp):
AAAAATAAAAAAAAAGTG
Found at i:107114455 original size:24 final size:25
Alignment explanation
Indices: 107114399--107114455 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
107114389 TAAGTTTACA
* *
107114399 TATTACAA-ATAAAAATAATTATATT
1 TATT-CAATATAAAAATAATTAGATG
*
107114424 TATCCAATATAAAAATAATT-GATG
1 TATTCAATATAAAAATAATTAGATG
107114448 TATTCAAT
1 TATTCAAT
107114456 TCATTAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.39
Consensus pattern (25 bp):
TATTCAATATAAAAATAATTAGATG
Found at i:107124420 original size:34 final size:35
Alignment explanation
Indices: 107124353--107124435 Score: 86
Period size: 34 Copynumber: 2.4 Consensus size: 35
107124343 TTAAACTCGA
*
107124353 GGTTCATGGTT-AAGGCTTAAGGTTGAGAGTTCGA
1 GGTTCAAGGTTCAAGGCTTAAGGTTGAGAGTTCGA
*
107124387 GGTTCAAGGTTCAAGG-TTCAAGCTTTGA-A-TTCGA
1 GGTTCAAGGTTCAAGGCTT-AAG-GTTGAGAGTTCGA
107124421 GAGTT-AAGGTTCAAG
1 G-GTTCAAGGTTCAAG
107124436 ATTTGAACCC
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
34 28 0.65
35 11 0.26
36 4 0.09
ACGTcount: A:0.27, C:0.11, G:0.31, T:0.31
Consensus pattern (35 bp):
GGTTCAAGGTTCAAGGCTTAAGGTTGAGAGTTCGA
Found at i:107130783 original size:12 final size:13
Alignment explanation
Indices: 107130755--107130784 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
107130745 AAGATAGATG
107130755 AATTAAATTTCTA
1 AATTAAATTTCTA
107130768 AATTAAATTT-TA
1 AATTAAATTTCTA
107130780 AATTA
1 AATTA
107130785 TGAAAAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTAAATTTCTA
Found at i:107132535 original size:17 final size:17
Alignment explanation
Indices: 107132492--107132525 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
107132482 AAATACTATC
107132492 TAAA-TAAATATTAAAT
1 TAAATTAAATATTAAAT
107132508 TAAATTAAATATTAAAT
1 TAAATTAAATATTAAAT
107132525 T
1 T
107132526 TATTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATTAAATATTAAAT
Found at i:107135627 original size:14 final size:15
Alignment explanation
Indices: 107135596--107135660 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
107135586 TTACAATTCA
107135596 TTTGTTTTCTTC-CT-
1 TTTGTTTT-TTCTCTG
107135610 TTTGTTTTTTCT-TG
1 TTTGTTTTTTCTCTG
*
107135624 TTTGTTGTTTT-TCTC
1 TTTGTT-TTTTCTCTG
107135639 TTTGTTTGTTTCTCTG
1 TTTGTTT-TTTCTCTG
107135655 -TTGTTT
1 TTTGTTT
107135661 GTATTGCTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
13 4 0.09
14 16 0.37
15 20 0.47
16 3 0.07
ACGTcount: A:0.00, C:0.12, G:0.14, T:0.74
Consensus pattern (15 bp):
TTTGTTTTTTCTCTG
Found at i:107135645 original size:19 final size:17
Alignment explanation
Indices: 107135611--107135648 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 17
107135601 TTTCTTCCTT
107135611 TTGTTTTTTCTTGTTTG
1 TTGTTTTTTCTTGTTTG
107135628 TTGTTTTTCTCTTTGTTTG
1 TTGTTTTT-TC-TTGTTTG
107135647 TT
1 TT
107135649 TCTCTGTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.42
18 2 0.11
19 9 0.47
ACGTcount: A:0.00, C:0.08, G:0.16, T:0.76
Consensus pattern (17 bp):
TTGTTTTTTCTTGTTTG
Found at i:107135871 original size:15 final size:16
Alignment explanation
Indices: 107135851--107135885 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
107135841 TGGGTTTCAA
107135851 TTTTATAATTT-AGAC
1 TTTTATAATTTGAGAC
*
107135866 TTTTATACTTTGAGAC
1 TTTTATAATTTGAGAC
107135882 TTTT
1 TTTT
107135886 TATTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.57
Consensus pattern (16 bp):
TTTTATAATTTGAGAC
Found at i:107136184 original size:44 final size:44
Alignment explanation
Indices: 107136119--107136982 Score: 221
Period size: 44 Copynumber: 18.6 Consensus size: 44
107136109 TTCGCTCCAC
* * *
107136119 TGCTCCACTGCGACTTCAGGGAGATAAGGTTTATAACTTCAATA
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAATA
* ** *
107136163 TGCTCCACTGCAACTTTAGGGAGATAAGATTTGTGGCTTCAATC
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAATA
* ** * **
107136207 TGCTCTACCACAACTTTAGGGAGATAAGATTCACCA-TGGT-AGATTTGA
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTTATAACT--TCA-A--T-A
* * * * * * * *
107136255 TCCGACCTACTGCAACTTCAAAGG-TATAAGATTTATAGCTTTAATC
1 TGC-TCC-ACTGCAACTT-TAGGGAGATAAGATTTATAACTTCAATA
* * * * * * * * *
107136301 TGCTCTACTGCAACCTCAGAGAGATAAGATTTGCTATCTTTAGTC
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTT-ATAACTTCAATA
* * * *
107136346 TGCTCCGCTGCAACTTTAGGGAGATAAGGCTTGTTATGGTAGA-TTTAATC
1 TGCTCCACTGCAACTTTAGGGAGATAA-G-AT-TTA---TA-ACTTCAATA
* * * * * ** * *
107136396 TGAC-CTACTGCAACTTCAGAGG-TATAGGATTTGTCGCTTTAATC
1 TG-CTCCACTGCAACTTTAG-GGAGATAAGATTTATAACTTCAATA
** * * * *
107136440 CACTTCACTGCAACTTCAAGGAGATAAGATTTGTGATTTGTAACTTCAATC
1 TGCTCCACTGCAACTTTAGGGAGATAAGA-TT-T-A----TAACTTCAATA
* * * * *
107136491 TGTTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAGCTTCAATT
1 TGCTCCACTGCAACTTTAGGGAGATAA-------GATTTATAACTTCAATA
* ** * * *
107136542 TGCTCCACTGCAATTTTAGGGAGATAAGATTCGCTATCTTCAGTC
1 TGCTCCACTGCAACTTTAGGGAGATAAGATT-TATAACTTCAATA
* * *
107136587 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACT-
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAA-TA
* * * ** *
107136631 TGCTCCACTGCAACTTCAGAGAGATAAGGTTTGTGATTTGTAGTTTCAATC
1 TGCTCCACTGCAACTTTAGGGAGATAA-------GATTTATAACTTCAATA
* * * * * ** * * * *
107136682 TGCCCCACTACAAATTCAAGGAGATAAGATTCGCTATCTTTAGTC
1 TGCTCCACTGCAACTTTAGGGAGATAAGATT-TATAACTTCAATA
* * * **
107136727 TGTTCCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAACC
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAATA
* * * *
107136771 TGCTCTACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAATT
1 TGCTCCACTGCAACTTTAGGGAGATAA-------GATTTATAACTTCAATA
* ** * * *
107136822 TGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTT
1 TGCTCCACTGCAACTTTAGGGAGATAAGATT-TATAACTTCAATA
* * * * * * **
107136867 TACTCCACTGTAACTTCAGAGAGATAAGACTTGTAACTTCAACC
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAATA
* * * * * **
107136911 TGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTCAACC
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAATA
*
107136955 TGCTCCACTGCAACTTCAGGGAGATAAG
1 TGCTCCACTGCAACTTTAGGGAGATAAG
107136983 GTTTGTGATT
Statistics
Matches: 614, Mismatches: 148, Indels: 116
0.70 0.17 0.13
Matches are distributed among these distances:
43 6 0.01
44 257 0.42
45 140 0.23
46 4 0.01
47 5 0.01
48 5 0.01
49 4 0.01
50 44 0.07
51 144 0.23
56 1 0.00
57 2 0.00
58 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (44 bp):
TGCTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTCAATA
Found at i:107136500 original size:51 final size:51
Alignment explanation
Indices: 107136445--107136993 Score: 361
Period size: 51 Copynumber: 11.7 Consensus size: 51
107136435 TAATCCACTT
* *
107136445 CACTGCAACTTCAAGGAGATAAGATTTGTGATTTGTAACTTCAATCTGTTC
1 CACTGCAACTTCAGGGAGATAAGATTTGTGATTTGTAACTTCAATCTGCTC
* * *
107136496 CACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAGCTTCAATTTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTTGTGATTTGTAACTTCAATCTGCTC
* * * *
107136547 CACTGCAATTTTAGGGAGATAAGATTCGCT-A----T--CTTCAGTCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTTG-TGATTTGTAACTTCAATCTGCTC
*
107136592 CACTGCAACTTCAGGGAGAT-A-A-----GACTTGTAACTTCAA-CTTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTTGTGATTTGTAACTTCAATC-TGCTC
* * ** *
107136636 CACTGCAACTTCAGAGAGATAAGGTTTGTGATTTGTAGTTTCAATCTGCCC
1 CACTGCAACTTCAGGGAGATAAGATTTGTGATTTGTAACTTCAATCTGCTC
* * * * * * *
107136687 CACTACAAATTCAAGGAGATAAGATTCGCT-A----T--CTTTAGTCTGTTC
1 CACTGCAACTTCAGGGAGATAAGATTTG-TGATTTGTAACTTCAATCTGCTC
* * *
107136732 CACTGCAACTTTAGGGAGAT-A-A-----GACTTGTAACTTCAACCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTTGTGATTTGTAACTTCAATCTGCTC
* * *
107136776 TACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAATTTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTTGTGATTTGTAACTTCAATCTGCTC
* * * *
107136827 CACTGCAACTTCAGGGAGATAAGATTCGCT-A----T--CTTCAGTTTACTC
1 CACTGCAACTTCAGGGAGATAAGATTTG-TGATTTGTAACTTCAATCTGCTC
* * * *
107136872 CACTGTAACTTCAGAGAGAT-A-A-----GACTTGTAACTTCAACCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTTGTGATTTGTAACTTCAATCTGCTC
* *
107136916 CACTGCAACTTCAGGGAGATAAGGTTTGTGA----T---TTCAACCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTTGTGATTTGTAACTTCAATCTGCTC
*
107136960 CACTGCAACTTCAGGGAGATAAGGTTTGTGATTT
1 CACTGCAACTTCAGGGAGATAAGATTTGTGATTT
107136994 CACCGATGTT
Statistics
Matches: 389, Mismatches: 59, Indels: 104
0.70 0.11 0.19
Matches are distributed among these distances:
38 3 0.01
42 3 0.01
43 4 0.01
44 129 0.33
45 85 0.22
47 4 0.01
51 157 0.40
52 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (51 bp):
CACTGCAACTTCAGGGAGATAAGATTTGTGATTTGTAACTTCAATCTGCTC
Found at i:107136644 original size:140 final size:140
Alignment explanation
Indices: 107136477--107136949 Score: 757
Period size: 140 Copynumber: 3.4 Consensus size: 140
107136467 GATTTGTGAT
* *
107136477 TTGTAACTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAGCTTCAATT
1 TTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAGCTTCAATT
* *
107136542 TGCTCCACTGCAATTTTAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGG
66 TGCTCCACTGCAAATTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGG
107136607 GAGATAAGAC
131 GAGATAAGAC
* * * *
107136617 TTGTAACTTCAACTTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGTGATTTGTAGTTTCAATC
1 TTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAGCTTCAATT
* * * * * *
107136682 TGCCCCACTACAAATTCAAGGAGATAAGATTCGCTATCTTTAGTCTGTTCCACTGCAACTTTAGG
66 TGCTCCACTGCAAATTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGG
107136747 GAGATAAGAC
131 GAGATAAGAC
* *
107136757 TTGTAACTTCAACCTGCTCTACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAATT
1 TTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAGCTTCAATT
* * * * *
107136822 TGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTTTACTCCACTGTAACTTCAGA
66 TGCTCCACTGCAAATTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGG
107136887 GAGATAAGAC
131 GAGATAAGAC
107136897 TTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTT
1 TTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTT
107136950 CAACCTGCTC
Statistics
Matches: 301, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
140 301 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (140 bp):
TTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAGCTTCAATT
TGCTCCACTGCAAATTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGG
GAGATAAGAC
Found at i:107136646 original size:191 final size:185
Alignment explanation
Indices: 107136445--107136981 Score: 465
Period size: 191 Copynumber: 2.9 Consensus size: 185
107136435 TAATCCACTT
** * * *
107136445 CACTGCAACTTCAAGGAGATAAGATTTGTGATTTGTAACTTCAATCTGTTCCACTGCAACTTCAG
1 CACTGCAACTTCAAGGAGATAAGATTTGTGATTTGTAACTTCAATCTGCCCCACTACAAATTCAA
* * *
107136510 GGAGATAAGGTTTG-TGAT-TTGTAGCTTCAATTTGCTCCACTGCAATTTTAGGGAGATAAGA-T
66 GGAGATAAGATTCGCT-ATCTT-TAG--TC----TGCTCCACTGCAACTTTAGGGAGATAAGACT
* **
107136572 TCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAA-GACTTGTAACTTCAACTTGCTC
123 T-G-TAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAATGACTTGTAACTTCAACTTGCTC
* **
107136636 CACTGCAACTTC-AGAGAGATAAGGTTTGTGATTTGTAGTTTCAATCTGCCCCACTACAAATTCA
1 CACTGCAACTTCAAG-GAGATAAGATTTGTGATTTGTAACTTCAATCTGCCCCACTACAAATTCA
*
107136700 AGGAGATAAGATTCGCTATCTTTAGTCTGTTCCACTGCAACTTTAGGGAGATAAGACTTGTAACT
65 AGGAGATAAGATTCGCTATCTTTAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTAACT
* * *
107136765 TCAACCTGCTCTACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAATTTGCTC
130 TCAACCTGCTCCACTGCAACTTCAGGGAGATAA------TGACTTGTAACTTCAACTTGCTC
* * * * * * ** *
107136827 CACTGCAACTTCAGGGAGATAAGATTCGCT-A----T--CTTCAGTTTACTCCACTGTAACTTC-
1 CACTGCAACTTCAAGGAGATAAGATTTG-TGATTTGTAACTTCAATCTGCCCCACTACAAATTCA
* * ** * ** *
107136884 AGAGAGATAAGACTT-G-TAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGA
65 AG-GAGATAAGA-TTCGCTATCTTTAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTAA
*
107136947 TTTCAACCTGCTCCACTGCAACTTCAGGGAGATAA
128 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAA
107136982 GGTTTGTGAT
Statistics
Matches: 291, Mismatches: 40, Indels: 37
0.79 0.11 0.10
Matches are distributed among these distances:
184 107 0.37
185 55 0.19
186 4 0.01
187 1 0.00
189 2 0.01
190 2 0.01
191 115 0.40
192 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (185 bp):
CACTGCAACTTCAAGGAGATAAGATTTGTGATTTGTAACTTCAATCTGCCCCACTACAAATTCAA
GGAGATAAGATTCGCTATCTTTAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTAACTT
CAACCTGCTCCACTGCAACTTCAGGGAGATAATGACTTGTAACTTCAACTTGCTC
Found at i:107138258 original size:14 final size:14
Alignment explanation
Indices: 107138230--107138269 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 14
107138220 CACCTTGGCC
107138230 TCTCATTTTTCTTTCT
1 TCTC-TTTTT-TTTCT
107138246 TCTCTTTTTTTTCT
1 TCTCTTTTTTTTCT
107138260 TCTCTTTTTT
1 TCTCTTTTTT
107138270 GGTGAAGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 15 0.62
15 5 0.21
16 4 0.17
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.75
Consensus pattern (14 bp):
TCTCTTTTTTTTCT
Found at i:107142797 original size:24 final size:22
Alignment explanation
Indices: 107142758--107142830 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
107142748 TTTCAAAATA
*
107142758 AATAAATAGAGTTTAAAATAAGGT
1 AATAAATA-AATTTAAAATAA-GT
*
107142782 ATATAAA-ACAATTTAAAACAAGT
1 A-ATAAATA-AATTTAAAATAAGT
* *
107142805 AATAAATAAATTTTAAATAAAT
1 AATAAATAAATTTAAAATAAGT
107142827 AATA
1 AATA
107142831 CCTAAAAACG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
22 20 0.49
23 4 0.10
24 12 0.29
25 5 0.12
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (22 bp):
AATAAATAAATTTAAAATAAGT
Found at i:107142968 original size:9 final size:9
Alignment explanation
Indices: 107142954--107142980 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
107142944 ATGTGAAACT
107142954 TAAAATAAA
1 TAAAATAAA
107142963 TAAAATAAA
1 TAAAATAAA
107142972 TAAAATAAA
1 TAAAATAAA
107142981 AAATCAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
TAAAATAAA
Found at i:107143894 original size:14 final size:13
Alignment explanation
Indices: 107143863--107143927 Score: 58
Period size: 14 Copynumber: 4.5 Consensus size: 13
107143853 TTACAATTCA
*
107143863 TTTGTTTTCTTCAT
1 TTTGTTTT-TTCTT
107143877 TTTGTTTTTTCTT
1 TTTGTTTTTTCTT
*
107143890 GTTTGTCATTTTTCTC
1 -TTTGT--TTTTTCTT
107143906 TTTGTTTGTTTCTT
1 TTTGTTT-TTTCTT
107143920 TGTTGTTT
1 T-TTGTTT
107143928 GTATTGCTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
13 6 0.14
14 19 0.44
15 11 0.26
16 7 0.16
ACGTcount: A:0.03, C:0.11, G:0.12, T:0.74
Consensus pattern (13 bp):
TTTGTTTTTTCTT
Found at i:107145798 original size:23 final size:24
Alignment explanation
Indices: 107145772--107145819 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
107145762 CACTTAACTG
107145772 TATATTTACTTCCGATTT-AAGGA
1 TATATTTACTTCCGATTTAAAGGA
* *
107145795 TATATTTTCTTCCTATTTAAAGGA
1 TATATTTACTTCCGATTTAAAGGA
107145819 T
1 T
107145820 GAGAAGGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.48
Consensus pattern (24 bp):
TATATTTACTTCCGATTTAAAGGA
Found at i:107149444 original size:14 final size:14
Alignment explanation
Indices: 107149427--107149460 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
107149417 TTAAGTTTTA
107149427 TATTTTTTCTTATT
1 TATTTTTTCTTATT
107149441 TATTTTTTCTTATT
1 TATTTTTTCTTATT
*
107149455 AATTTT
1 TATTTT
107149461 CAAAAGCTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (14 bp):
TATTTTTTCTTATT
Found at i:107149540 original size:33 final size:33
Alignment explanation
Indices: 107149503--107149568 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
107149493 ATAATATATA
107149503 TATTTTTAAAA-TTTAAATATATATATTTTAAAT
1 TATTTTTAAAATTTTAAATAT-TATATTTTAAAT
*
107149536 TATTTTTAAAATTTTAAATATTATTTTTTAAAT
1 TATTTTTAAAATTTTAAATATTATATTTTAAAT
107149569 ATTAAATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 22 0.71
34 9 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (33 bp):
TATTTTTAAAATTTTAAATATTATATTTTAAAT
Found at i:107149595 original size:21 final size:21
Alignment explanation
Indices: 107149534--107149586 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
107149524 TATATTTTAA
* *
107149534 ATTATTTTTAAAATTTTAAAT
1 ATTATTTTTTAAATATTAAAT
107149555 ATTATTTTTTAAATATTAAAT
1 ATTATTTTTTAAATATTAAAT
107149576 A-TATTTTTTAA
1 ATTATTTTTTAA
107149587 TAATATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 10 0.33
21 20 0.67
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTATTTTTTAAATATTAAAT
Found at i:107149670 original size:17 final size:17
Alignment explanation
Indices: 107149650--107149709 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
107149640 GTTTTATAAT
107149650 ATTTTAAATATTTTTAA
1 ATTTTAAATATTTTTAA
107149667 ATTTTAATATATATTTTAA
1 ATTTTAA-ATAT-TTTTAA
* *
107149686 ACATTTAAATATTATTAA
1 A-TTTTAAATATTTTTAA
*
107149704 TTTTTA
1 ATTTTA
107149710 CAAAGTGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
17 11 0.31
18 9 0.25
19 11 0.31
20 5 0.14
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTAAATATTTTTAA
Found at i:107149680 original size:20 final size:21
Alignment explanation
Indices: 107149657--107149701 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
107149647 AATATTTTAA
* *
107149657 ATATTTTTAA-ATTTTAATAT
1 ATATTTTAAACATTTAAATAT
107149677 ATATTTTAAACATTTAAATAT
1 ATATTTTAAACATTTAAATAT
107149698 -TATT
1 ATATT
107149702 AATTTTTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
ATATTTTAAACATTTAAATAT
Found at i:107149692 original size:27 final size:26
Alignment explanation
Indices: 107149641--107149709 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 26
107149631 TTATTATTAG
*
107149641 TTTTATAATATTTTAAATATTTTTAAA
1 TTTTATAATATTTTAAACA-TTTTAAA
107149668 TTTTAATATATATTTTAAACA-TTTAAA
1 TTTT-ATA-ATATTTTAAACATTTTAAA
*
107149695 TATTATTAAT-TTTTA
1 TTTTA-TAATATTTTA
107149710 CAAAGTGATT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
25 5 0.14
26 3 0.08
27 15 0.41
28 3 0.08
29 11 0.30
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (26 bp):
TTTTATAATATTTTAAACATTTTAAA
Found at i:107149798 original size:22 final size:23
Alignment explanation
Indices: 107149745--107149790 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
107149735 TATATTTTTA
*
107149745 TAAACATTTAAATATTATTAATT
1 TAAACATTTAAATATTAGTAATT
107149768 TAAACATTTAAAT-TTAGTAATT
1 TAAACATTTAAATATTAGTAATT
107149790 T
1 T
107149791 TTATATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (23 bp):
TAAACATTTAAATATTAGTAATT
Found at i:107149798 original size:57 final size:59
Alignment explanation
Indices: 107149674--107149800 Score: 181
Period size: 57 Copynumber: 2.2 Consensus size: 59
107149664 TAAATTTTAA
*
107149674 TATATATTTTAAACATTTAAATATTATTAATTTTTACAAAGTGATTAAATTTAGTAATTTT
1 TATATTTTTTAAACATTTAAATATTATTAA-TTTTACAAAGT-ATTAAATTTAGTAATTTT
107149735 TATATTTTTATAAACATTTAAATATTATTAA-TTTA-AACA-T-TTAAATTTAGTAATTTT
1 TATATTTTT-TAAACATTTAAATATTATTAATTTTACAA-AGTATTAAATTTAGTAATTTT
107149792 TATATTTTT
1 TATATTTTT
107149801 GAGATAGGAA
Statistics
Matches: 63, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
57 26 0.41
59 3 0.05
60 5 0.08
61 8 0.13
62 21 0.33
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (59 bp):
TATATTTTTTAAACATTTAAATATTATTAATTTTACAAAGTATTAAATTTAGTAATTTT
Found at i:107150657 original size:32 final size:32
Alignment explanation
Indices: 107150615--107150728 Score: 113
Period size: 33 Copynumber: 3.5 Consensus size: 32
107150605 TACCCAAATG
* *
107150615 GTACAACTTGGAATGGTTATGTACACTTTGTGT
1 GTAC-ACTTGGAAAGGTTATGTATACTTTGTGT
* *
107150648 GTACACTTGGAAAGGTTAGGTATACTTTGCGT
1 GTACACTTGGAAAGGTTATGTATACTTTGTGT
* * **
107150680 TTAC-CATATGAAAAGGAAATGTATACTTTGTGT
1 GTACAC-T-TGGAAAGGTTATGTATACTTTGTGT
107150713 GTAGCACTTGGAAAGG
1 GTA-CACTTGGAAAGG
107150729 AATGCACACC
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
31 1 0.02
32 28 0.43
33 33 0.51
34 2 0.03
35 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.34
Consensus pattern (32 bp):
GTACACTTGGAAAGGTTATGTATACTTTGTGT
Found at i:107154189 original size:29 final size:29
Alignment explanation
Indices: 107154116--107154189 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
107154106 TAAAATTTTT
*
107154116 AAATTTTCTAAAAATTAAATAAAAGTAGATA
1 AAATTTTC-AAAAA-TAAATAAAAGTAGAGA
*
107154147 AAATTTTTAAAAATAAAT-AAAGTGAGAGA
1 AAATTTTCAAAAATAAATAAAAGT-AGAGA
*
107154176 AAATTATCAAAAAT
1 AAATTTTCAAAAAT
107154190 TATTTTTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 5 0.13
29 21 0.55
30 5 0.13
31 7 0.18
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (29 bp):
AAATTTTCAAAAATAAATAAAAGTAGAGA
Found at i:107154211 original size:15 final size:15
Alignment explanation
Indices: 107154191--107154237 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
107154181 ATCAAAAATT
107154191 ATTTTTTATCCTCCA
1 ATTTTTTATCCTCCA
107154206 ATTTTTTAT--T---
1 ATTTTTTATCCTCCA
107154216 ATTTTTTATCCTCCA
1 ATTTTTTATCCTCCA
107154231 ATTTTTT
1 ATTTTTT
107154238 CTTGTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
10 9 0.33
12 1 0.04
13 1 0.04
15 16 0.59
ACGTcount: A:0.19, C:0.17, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTTTTATCCTCCA
Found at i:107154217 original size:25 final size:25
Alignment explanation
Indices: 107154188--107154237 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
107154178 ATTATCAAAA
107154188 ATTATTTTTTATCCTCCAATTTTTT
1 ATTATTTTTTATCCTCCAATTTTTT
107154213 ATTATTTTTTATCCTCCAATTTTTT
1 ATTATTTTTTATCCTCCAATTTTTT
107154238 CTTGTATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (25 bp):
ATTATTTTTTATCCTCCAATTTTTT
Found at i:107161207 original size:18 final size:16
Alignment explanation
Indices: 107161185--107161234 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
107161175 CTCTTTTATG
107161185 ATTTTTATTTTTTTTA
1 ATTTTTATTTTTTTTA
*
107161201 CATTTTTATAACTTTTTTA
1 -ATTTTTAT--TTTTTTTA
107161220 ATTTTTATTTATTTT
1 ATTTTTATTT-TTTT
107161235 CAAAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 1 0.04
17 12 0.43
18 8 0.29
19 7 0.25
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTTTTATTTTTTTTA
Found at i:107164884 original size:16 final size:16
Alignment explanation
Indices: 107164863--107164898 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
107164853 GAGGATTACA
107164863 CTTTGGGTAAAGTTCC
1 CTTTGGGTAAAGTTCC
107164879 CTTTGGGTAAAGTTCC
1 CTTTGGGTAAAGTTCC
107164895 CTTT
1 CTTT
107164899 TTTTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (16 bp):
CTTTGGGTAAAGTTCC
Found at i:107171995 original size:32 final size:32
Alignment explanation
Indices: 107171954--107172021 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
107171944 TAGATTTAAA
107171954 TTAAGTTCCGTTGAAATATACGTAAAAGTTTT
1 TTAAGTTCCGTTGAAATATACGTAAAAGTTTT
107171986 TTAAGTTCCGTTGAAATATACGTAAAAGTTTT
1 TTAAGTTCCGTTGAAATATACGTAAAAGTTTT
107172018 TTAA
1 TTAA
107172022 AAAATTATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (32 bp):
TTAAGTTCCGTTGAAATATACGTAAAAGTTTT
Found at i:107179550 original size:20 final size:19
Alignment explanation
Indices: 107179525--107179563 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
107179515 CCCAAACCCC
107179525 AAACAAAATAAATCCCAAAT
1 AAACAAAATAAAT-CCAAAT
**
107179545 AAACAATTTAAATCCAAAT
1 AAACAAAATAAATCCAAAT
107179564 TATTACAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.62, C:0.18, G:0.00, T:0.21
Consensus pattern (19 bp):
AAACAAAATAAATCCAAAT
Found at i:107181439 original size:17 final size:17
Alignment explanation
Indices: 107181419--107181458 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
107181409 ATTTTAAAAT
** *
107181419 TTTATTTTTTTAATTTA
1 TTTATTTTTAAAACTTA
107181436 TTTATTTTTAAAACTTA
1 TTTATTTTTAAAACTTA
107181453 TTTATT
1 TTTATT
107181459 ATCTTTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTATTTTTAAAACTTA
Found at i:107181454 original size:30 final size:32
Alignment explanation
Indices: 107181390--107181455 Score: 84
Period size: 30 Copynumber: 2.1 Consensus size: 32
107181380 TTTTCTTAAA
*
107181390 ATTTTTTTATATATTATTGATTTTAAAATTTT
1 ATTTTTTTATATATTATTGATTTTAAAATCTT
*
107181422 ATTTTTTTA-AT-TTATTTATTTTTAAAA-CTT
1 ATTTTTTTATATATTATTGA-TTTTAAAATCTT
107181452 ATTT
1 ATTT
107181456 ATTATCTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 12 0.39
31 10 0.32
32 9 0.29
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (32 bp):
ATTTTTTTATATATTATTGATTTTAAAATCTT
Found at i:107186660 original size:29 final size:29
Alignment explanation
Indices: 107186610--107186668 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 29
107186600 ATCTTTCTTT
107186610 TTAACAAATAACACTGGAGCTCTCC-ACGG
1 TTAACAAATAACACTGGAGCTC-CCTACGG
107186639 TTAACAAATAACACT-GAGGCTCCCTACGG
1 TTAACAAATAACACTGGA-GCTCCCTACGG
107186668 T
1 T
107186669 GACTAACTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 4 0.14
29 24 0.86
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (29 bp):
TTAACAAATAACACTGGAGCTCCCTACGG
Found at i:107195944 original size:15 final size:17
Alignment explanation
Indices: 107195914--107195955 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
107195904 CATACAATGG
107195914 CATCAA-TCATGCAATA
1 CATCAATTCATGCAATA
107195930 C-TCAATTCATG-AATA
1 CATCAATTCATGCAATA
*
107195945 CATCATTTCAT
1 CATCAATTCAT
107195956 ACCATACTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (17 bp):
CATCAATTCATGCAATA
Found at i:107199320 original size:18 final size:17
Alignment explanation
Indices: 107199295--107199330 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
107199285 AAATTTTTTC
107199295 TATTTTTTTATGAAAAA
1 TATTTTTTTATGAAAAA
*
107199312 TATTTTTTTATGGAAAA
1 TATTTTTTTATGAAAAA
107199329 TA
1 TA
107199331 AAAAAATGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (17 bp):
TATTTTTTTATGAAAAA
Found at i:107201910 original size:12 final size:13
Alignment explanation
Indices: 107201893--107201921 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
107201883 TTTTTAAAAA
107201893 AAATATAAATA-T
1 AAATATAAATACT
107201905 AAATATAAATACT
1 AAATATAAATACT
107201918 AAAT
1 AAAT
107201922 TCTAAATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATATAAATACT
Found at i:107209319 original size:41 final size:41
Alignment explanation
Indices: 107209197--107209332 Score: 147
Period size: 41 Copynumber: 3.4 Consensus size: 41
107209187 AAAACATCGG
* *
107209197 CACCCAGTGCCTCATCGGA-TAATTCGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGAACTAATCCGAAGTAATAAATTGA
* * * * * * *
107209237 CACCTAGTGTCTCA-CCAGCTAAACTGAAG---TAAATTGG
1 CACCCAGTGCCTCATCGAACTAATCCGAAGTAATAAATTGA
107209274 CACCCAGTGCCTCATCGAACTAATCCGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGAACTAATCCGAAGTAATAAATTGA
*
107209315 CACCCAGTGTCTCATCGA
1 CACCCAGTGCCTCATCGA
107209333 CTCGAAGTCG
Statistics
Matches: 74, Mismatches: 17, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
37 19 0.26
38 11 0.15
39 1 0.01
40 19 0.26
41 24 0.32
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (41 bp):
CACCCAGTGCCTCATCGAACTAATCCGAAGTAATAAATTGA
Found at i:107216590 original size:21 final size:21
Alignment explanation
Indices: 107216542--107216594 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
107216532 CACCATTGTT
107216542 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACTGCTACAGTA
*
107216563 TCCAATCTCACTGCTACAGTAA
1 TCTAATCTCACTGCTACAGT-A
107216585 T-TAATCTCAC
1 TCTAATCTCAC
107216595 CGCCACCGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 27 0.93
22 2 0.07
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (21 bp):
TCTAATCTCACTGCTACAGTA
Found at i:107219283 original size:6 final size:6
Alignment explanation
Indices: 107219272--107219309 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
107219262 AATTGTTAAA
107219272 CCCGAG CCCGAG CCCGAG CCCGAG CCCGA- CCCGA- CCCG
1 CCCGAG CCCGAG CCCGAG CCCGAG CCCGAG CCCGAG CCCG
107219310 GTCCATATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 9 0.28
6 23 0.72
ACGTcount: A:0.16, C:0.55, G:0.29, T:0.00
Consensus pattern (6 bp):
CCCGAG
Found at i:107219426 original size:40 final size:40
Alignment explanation
Indices: 107219382--107219462 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
107219372 TCAAATACAT
107219382 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
* * * * **
107219422 TTAAAACAATTCTTAAAACAATACACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
107219462 T
1 T
107219463 AATAAAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.63, C:0.10, G:0.02, T:0.25
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
Found at i:107219471 original size:20 final size:19
Alignment explanation
Indices: 107219448--107219526 Score: 58
Period size: 20 Copynumber: 4.2 Consensus size: 19
107219438 AACAATACAC
107219448 AAATTGAAAATATATAATAA
1 AAATTGAAAATATA-AATAA
** *
107219468 AAATTGATTATATTAAAATTA
1 AAATTGAAAATA-T-AAATAA
107219489 AAATT-AAAATATAAAT-A
1 AAATTGAAAATATAAATAA
* *
107219506 TAATT-AAAA-ATAAAAAA
1 AAATTGAAAATATAAATAA
107219523 AAAT
1 AAAT
107219527 ATATTTATTA
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
16 5 0.10
17 13 0.27
18 4 0.08
19 1 0.02
20 14 0.29
21 10 0.21
22 1 0.02
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (19 bp):
AAATTGAAAATATAAATAA
Found at i:107219513 original size:23 final size:22
Alignment explanation
Indices: 107219484--107219529 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
107219474 ATTATATTAA
* *
107219484 AATTAAAATTAAAATATAAATAT
1 AATTAAAAATAAAA-AAAAATAT
107219507 AATTAAAAATAAAAAAAAATAT
1 AATTAAAAATAAAAAAAAATAT
107219529 A
1 A
107219530 TTTATTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (22 bp):
AATTAAAAATAAAAAAAAATAT
Found at i:107229404 original size:24 final size:26
Alignment explanation
Indices: 107229376--107229426 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
107229366 AGCTTATTTC
*
107229376 ATTAAAT-AAA-AAATTTTAAAATAT
1 ATTAAATCAAATAAATTTAAAAATAT
*
107229400 ATTAAATCAAATACATTTAAAAATAT
1 ATTAAATCAAATAAATTTAAAAATAT
107229426 A
1 A
107229427 AAAACAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (26 bp):
ATTAAATCAAATAAATTTAAAAATAT
Found at i:107237336 original size:13 final size:13
Alignment explanation
Indices: 107237318--107237358 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
107237308 GTTTATTTTA
*
107237318 TTGAAAATGATTT
1 TTGAAAATAATTT
107237331 TTGAAAAATAATTT
1 TTG-AAAATAATTT
107237345 TTAGAAAATAATTT
1 TT-GAAAATAATTT
107237359 ATTTTTTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 3 0.12
14 21 0.84
15 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (13 bp):
TTGAAAATAATTT
Found at i:107242751 original size:30 final size:30
Alignment explanation
Indices: 107242717--107242777 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
107242707 TTTATAGCAA
*
107242717 TAGTGATTTGTATTAAATATAATATTTTCT
1 TAGTGATTCGTATTAAATATAATATTTTCT
107242747 TAGTGATTCGTATTAAATATAATATTTTCT
1 TAGTGATTCGTATTAAATATAATATTTTCT
107242777 T
1 T
107242778 CATTCACAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.52
Consensus pattern (30 bp):
TAGTGATTCGTATTAAATATAATATTTTCT
Found at i:107245366 original size:24 final size:24
Alignment explanation
Indices: 107245323--107245377 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
107245313 TTTGAGTCCA
*
107245323 TTTATTTTTCGATTTGTTTTTATT
1 TTTATTTTTCGATTTGTTTTTATC
*
107245347 TTTATTTTT-GCA-TTGCTTTTTGTC
1 TTTATTTTTCG-ATTTG-TTTTTATC
107245371 TTTATTT
1 TTTATTT
107245378 ATCACTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 4 0.15
24 23 0.85
ACGTcount: A:0.11, C:0.07, G:0.09, T:0.73
Consensus pattern (24 bp):
TTTATTTTTCGATTTGTTTTTATC
Found at i:107250534 original size:24 final size:25
Alignment explanation
Indices: 107250498--107250547 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
107250488 GAGGGTTATT
107250498 ATTATTATTATTTAAAATTAAAATA
1 ATTATTATTATTTAAAATTAAAATA
* *
107250523 ATTATT-TTATTTAATATTAATATA
1 ATTATTATTATTTAAAATTAAAATA
107250547 A
1 A
107250548 AATTTAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTATTATTATTTAAAATTAAAATA
Found at i:107251186 original size:14 final size:14
Alignment explanation
Indices: 107251167--107251211 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
107251157 TTTTATATGT
107251167 TATAAATAACAGAA
1 TATAAATAACAGAA
*
107251181 TAT-AA-AAC-G-T
1 TATAAATAACAGAA
107251191 TATAAATAACAGAA
1 TATAAATAACAGAA
107251205 TATAAAT
1 TATAAAT
107251212 TATTATAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
10 3 0.12
11 3 0.12
12 6 0.24
13 3 0.12
14 10 0.40
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.27
Consensus pattern (14 bp):
TATAAATAACAGAA
Found at i:107251195 original size:24 final size:24
Alignment explanation
Indices: 107251165--107251210 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
107251155 AATTTTATAT
107251165 GTTATAAATAACAGAATATAAAAC
1 GTTATAAATAACAGAATATAAAAC
107251189 GTTATAAATAACAGAATATAAA
1 GTTATAAATAACAGAATATAAA
107251211 TTATTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.26
Consensus pattern (24 bp):
GTTATAAATAACAGAATATAAAAC
Found at i:107251217 original size:24 final size:24
Alignment explanation
Indices: 107251166--107251220 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
107251156 ATTTTATATG
*
107251166 TTATAAATAACAGAATATAAAACG
1 TTATAAATAACAGAATATAAAACA
**
107251190 TTATAAATAACAGAATATAAATTA
1 TTATAAATAACAGAATATAAAACA
107251214 TTATAAA
1 TTATAAA
107251221 CTTATAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.31
Consensus pattern (24 bp):
TTATAAATAACAGAATATAAAACA
Found at i:107262001 original size:30 final size:30
Alignment explanation
Indices: 107261961--107262018 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
107261951 CATACAGCCG
*
107261961 TGTAATATAACCGTGTGTCACACACGGCCA
1 TGTAACATAACCGTGTGTCACACACGGCCA
107261991 TGTAACATAACCGTGTGTCACACACGGC
1 TGTAACATAACCGTGTGTCACACACGGC
107262019 TGAGACACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (30 bp):
TGTAACATAACCGTGTGTCACACACGGCCA
Found at i:107267096 original size:26 final size:26
Alignment explanation
Indices: 107267025--107267097 Score: 62
Period size: 26 Copynumber: 2.7 Consensus size: 26
107267015 TTAACCTTCA
*
107267025 AAAATAATAAAAATTTGATATAATCCTTT
1 AAAATAAT-AAAA-TT-ATATAATACTTT
107267054 AAAA-AAGTATAAA-TATATAA-ACTATT
1 AAAATAA-TA-AAATTATATAATACT-TT
107267080 AAAATAATAAAATTATAT
1 AAAATAATAAAATTATAT
107267098 TTTTACTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
25 5 0.13
26 19 0.50
27 3 0.08
28 3 0.08
29 8 0.21
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (26 bp):
AAAATAATAAAATTATATAATACTTT
Found at i:107274493 original size:19 final size:20
Alignment explanation
Indices: 107274469--107274513 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
107274459 AATTTGGGAT
107274469 AAATTT-GAAACAAA-TAAAA
1 AAATTTGGAAA-AAAGTAAAA
*
107274488 AAATTTGGAAAAAAGTAGAA
1 AAATTTGGAAAAAAGTAAAA
107274508 AAATTT
1 AAATTT
107274514 TAAAATAGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.62, C:0.02, G:0.11, T:0.24
Consensus pattern (20 bp):
AAATTTGGAAAAAAGTAAAA
Found at i:107285171 original size:28 final size:29
Alignment explanation
Indices: 107285140--107285290 Score: 143
Period size: 29 Copynumber: 5.3 Consensus size: 29
107285130 GTGAGCATGA
* * *
107285140 ATAT-AATGTGATTTTGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
107285168 ATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
*
107285196 ATATGAATGTGAATTGGGTCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
*
107285225 ATATGAACT-TGAATTGGGCCAGATGGGCC
1 ATATGAA-TGTGAATTGGGCCTGATGGGCC
* *
107285254 ATAT-AA-ATGAGTTGGGCCT-AGTGGGCC
1 ATATGAATGTGAATTGGGCCTGA-TGGGCC
*
107285281 ATATGCATGT
1 ATATGAATGT
107285291 ATGTAGGGGT
Statistics
Matches: 101, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
26 1 0.01
27 20 0.20
28 29 0.29
29 50 0.50
30 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:107285900 original size:5 final size:5
Alignment explanation
Indices: 107285895--107285925 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
107285885 GGATGGGATC
*
107285895 GCATC GCATT GCATT GCATT GCATT GCATT G
1 GCATT GCATT GCATT GCATT GCATT GCATT G
107285926 TATGTTTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (5 bp):
GCATT
Found at i:107289014 original size:51 final size:51
Alignment explanation
Indices: 107288938--107289049 Score: 188
Period size: 51 Copynumber: 2.2 Consensus size: 51
107288928 ATTACATTTA
*
107288938 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
* *
107288989 TCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
*
107289040 TCACTGATCA
1 TCACTTATCA
107289050 GAAATACTCA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (51 bp):
TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
Found at i:107296755 original size:51 final size:51
Alignment explanation
Indices: 107296684--107296844 Score: 268
Period size: 51 Copynumber: 3.2 Consensus size: 51
107296674 CTGATCACAT
107296684 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
107296735 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * * *
107296786 TTGTCACTTATCACTGATCAGATAAGTGTAGTTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
107296837 TTGTCACT
1 TTATCACT
107296845 GATCAGAAGT
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 105 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Done.