Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 321 of 362
Found at i:107299430 original size:15 final size:15
Alignment explanation
Indices: 107299412--107299442 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
107299402 TATGAAAGGG
*
107299412 GTGATAATGATAATA
1 GTGACAATGATAATA
107299427 GTGACAATGATAATA
1 GTGACAATGATAATA
107299442 G
1 G
107299443 AAGCCCATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.03, G:0.23, T:0.29
Consensus pattern (15 bp):
GTGACAATGATAATA
Found at i:107299998 original size:100 final size:99
Alignment explanation
Indices: 107299824--107300014 Score: 310
Period size: 100 Copynumber: 1.9 Consensus size: 99
107299814 GACCCCCTTC
* * *
107299824 AATTTTGTAAAATTACTTTGAATGCCTTTTAAGTTTTAATTTTTTATTTTGATATTATAATTAGT
1 AATTTTGTAAAATTACTTTGAAGGCCCTTTAAGTTTTAATTTTTTAATTTGATATTATAATTAGT
*
107299889 GCTTAAAAAAAGGAAAAATTTGTGTTCTCCCCTA
66 GCTTAAAAAAAAGAAAAATTTGTGTTCTCCCCTA
107299923 AATTTTGTAAAATTACTTTTGAAGGCCCTTTAAGTTTTAATTTTTTAATTTGATATTATAATTAG
1 AATTTTGTAAAATTAC-TTTGAAGGCCCTTTAAGTTTTAATTTTTTAATTTGATATTATAATTAG
* * *
107299988 TGTTTGAAAAAAAGATAAATTTGTGTT
65 TGCTTAAAAAAAAGAAAAATTTGTGTT
107300015 TGACCCCCCA
Statistics
Matches: 84, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
99 16 0.19
100 68 0.81
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.47
Consensus pattern (99 bp):
AATTTTGTAAAATTACTTTGAAGGCCCTTTAAGTTTTAATTTTTTAATTTGATATTATAATTAGT
GCTTAAAAAAAAGAAAAATTTGTGTTCTCCCCTA
Found at i:107300237 original size:61 final size:61
Alignment explanation
Indices: 107300119--107300239 Score: 163
Period size: 61 Copynumber: 2.0 Consensus size: 61
107300109 ATATAAAGTA
* * * * *
107300119 GTATCTAATTATTAATTTGGTAAAAATAAAGTTTAATATTTGCAATATCTAAGTACAAATC
1 GTATCTAAATATTAATTAGGTAAAAATAAAGTTAAATAATTACAATATCTAAGTACAAATC
* *
107300180 GTATCTAAATATTAATTAGGTAAAAAATAAAGTTAAATAATTATACTATCTAA-TACAAAT
1 GTATCTAAATATTAATTAGGT-AAAAATAAAGTTAAATAATTACAATATCTAAGTACAAAT
107300240 TGAGCATTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
61 26 0.50
62 26 0.50
ACGTcount: A:0.47, C:0.07, G:0.08, T:0.37
Consensus pattern (61 bp):
GTATCTAAATATTAATTAGGTAAAAATAAAGTTAAATAATTACAATATCTAAGTACAAATC
Found at i:107302270 original size:21 final size:20
Alignment explanation
Indices: 107302246--107302291 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
107302236 CAAACAACAG
107302246 AAAAAAAACATAAACTGAAAT
1 AAAAAAAAC-TAAACTGAAAT
* * *
107302267 AAAAAATACTCAATTGAAAT
1 AAAAAAAACTAAACTGAAAT
107302287 AAAAA
1 AAAAA
107302292 TAAAATCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.70, C:0.09, G:0.04, T:0.17
Consensus pattern (20 bp):
AAAAAAAACTAAACTGAAAT
Found at i:107313970 original size:43 final size:43
Alignment explanation
Indices: 107313909--107314074 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 43
107313899 AAAATGCCAC
* * * *
107313909 AAAAGATCATGACTTTTAGTGGCGTTTGTGGGAAAGGCGCCGCT
1 AAAAG-TCATGGCTTTTAGCGGCATTTGTGGGAAAAGCGCCGCT
* * * * **
107313953 AAAATTTATGGCTTTTAGCGGCATTTGAGGGAAAAGTGTTGCT
1 AAAAGTCATGGCTTTTAGCGGCATTTGTGGGAAAAGCGCCGCT
** * * *
107313996 AAAAGTCATGGCTTTTAATGACGTTTTTGGGAAAAGCGCCGCT
1 AAAAGTCATGGCTTTTAGCGGCATTTGTGGGAAAAGCGCCGCT
* *
107314039 AAAAGTCACGGCTTTTAGCAGCATTTGTGGGAAAAG
1 AAAAGTCATGGCTTTTAGCGGCATTTGTGGGAAAAG
107314075 ATAAATCTAA
Statistics
Matches: 94, Mismatches: 28, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
43 90 0.96
44 4 0.04
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (43 bp):
AAAAGTCATGGCTTTTAGCGGCATTTGTGGGAAAAGCGCCGCT
Found at i:107314029 original size:86 final size:87
Alignment explanation
Indices: 107313909--107314074 Score: 235
Period size: 86 Copynumber: 1.9 Consensus size: 87
107313899 AAAATGCCAC
* * * * * * *
107313909 AAAAGATCATGACTTTTAGTGGCGTTTGTGGGAAAGGCGCCGCTAAAATTTATGGCTTTTAGCGG
1 AAAAGATCATGACTTTTAATGACGTTTGTGGGAAAAGCGCCGCTAAAAGTCACGGCTTTTAGCAG
107313974 CATTTGAGGGAAAAGTGTTGCT
66 CATTTGAGGGAAAAGTGTTGCT
* *
107313996 AAAAG-TCATGGCTTTTAATGACGTTTTTGGGAAAAGCGCCGCTAAAAGTCACGGCTTTTAGCAG
1 AAAAGATCATGACTTTTAATGACGTTTGTGGGAAAAGCGCCGCTAAAAGTCACGGCTTTTAGCAG
*
107314060 CATTTGTGGGAAAAG
66 CATTTGAGGGAAAAG
107314075 ATAAATCTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
86 64 0.93
87 5 0.07
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (87 bp):
AAAAGATCATGACTTTTAATGACGTTTGTGGGAAAAGCGCCGCTAAAAGTCACGGCTTTTAGCAG
CATTTGAGGGAAAAGTGTTGCT
Found at i:107314336 original size:21 final size:21
Alignment explanation
Indices: 107314312--107314357 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
107314302 ACCATCGCTA
*
107314312 CTGCCTCTGCCTCCCTCACTG
1 CTGCCACTGCCTCCCTCACTG
* *
107314333 CTGCCACTGCCTCTCTCGCTG
1 CTGCCACTGCCTCCCTCACTG
107314354 CTGC
1 CTGC
107314358 ATCCGCTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.04, C:0.50, G:0.17, T:0.28
Consensus pattern (21 bp):
CTGCCACTGCCTCCCTCACTG
Found at i:107314796 original size:13 final size:14
Alignment explanation
Indices: 107314770--107314798 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
107314760 ACTACCGACG
107314770 AATTAAACCATTAT
1 AATTAAACCATTAT
107314784 AATTAAA-CATTAT
1 AATTAAACCATTAT
107314797 AA
1 AA
107314799 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:107318782 original size:13 final size:13
Alignment explanation
Indices: 107318764--107318797 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
107318754 ATCGCACACG
*
107318764 GGCGTGTCATACA
1 GGCGTGTCAGACA
*
107318777 GGCGTGTCAGACG
1 GGCGTGTCAGACA
107318790 GGCGTGTC
1 GGCGTGTC
107318798 CCTGTCGAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.15, C:0.24, G:0.41, T:0.21
Consensus pattern (13 bp):
GGCGTGTCAGACA
Found at i:107319176 original size:14 final size:14
Alignment explanation
Indices: 107319157--107319183 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
107319147 ATATTTAACT
107319157 TGTTCTTAATTATG
1 TGTTCTTAATTATG
107319171 TGTTCTTAATTAT
1 TGTTCTTAATTAT
107319184 TGTCTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:107323000 original size:55 final size:55
Alignment explanation
Indices: 107322885--107323008 Score: 137
Period size: 55 Copynumber: 2.3 Consensus size: 55
107322875 TGTGGCATGG
* *
107322885 CCGTGGGCGAACCTGCCAAAACAACACGGGCGTACGACACGCCCGTGCCTGGAAA
1 CCGTGGGCGAACCTACCAAAACAACACAGGCGTACGACACGCCCGTGCCTGGAAA
* * * * *
107322940 TCGTGGTCGAACCTATCAAATA-AACACAGGCGTGCGACAC-CCTCGTG-CTGAGCAA
1 CCGTGGGCGAACCTACCAAA-ACAACACAGGCGTACGACACGCC-CGTGCCTG-GAAA
107322995 CCGTGGGCGAACCT
1 CCGTGGGCGAACCT
107323009 GTCAGATTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
54 5 0.09
55 51 0.89
56 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.27, T:0.14
Consensus pattern (55 bp):
CCGTGGGCGAACCTACCAAAACAACACAGGCGTACGACACGCCCGTGCCTGGAAA
Found at i:107327322 original size:24 final size:24
Alignment explanation
Indices: 107327290--107327339 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
107327280 TGAGGAAAGG
107327290 GATTAGGGATTAGGGGAAATGGGT
1 GATTAGGGATTAGGGGAAATGGGT
*
107327314 GATTGGGGATTAGGGGAAATGGGT
1 GATTAGGGATTAGGGGAAATGGGT
107327338 GA
1 GA
107327340 AATGGCTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.48, T:0.24
Consensus pattern (24 bp):
GATTAGGGATTAGGGGAAATGGGT
Found at i:107327685 original size:20 final size:19
Alignment explanation
Indices: 107327662--107327704 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
107327652 TTATATTTCA
107327662 TTTTTATTT-GTTATCAAT
1 TTTTTATTTAGTTATCAAT
*
107327680 GTTTTTATTTATTTATCAAT
1 -TTTTTATTTAGTTATCAAT
107327700 TTTTT
1 TTTTT
107327705 TAAATCTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTTTATTTAGTTATCAAT
Found at i:107327686 original size:19 final size:20
Alignment explanation
Indices: 107327662--107327706 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
107327652 TTATATTTCA
107327662 TTTTTATTT-GTTATCAATG
1 TTTTTATTTAGTTATCAATG
* *
107327681 TTTTTATTTATTTATCAATT
1 TTTTTATTTAGTTATCAATG
107327701 TTTTTA
1 TTTTTA
107327707 AATCTAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.69
Consensus pattern (20 bp):
TTTTTATTTAGTTATCAATG
Found at i:107327994 original size:7 final size:7
Alignment explanation
Indices: 107327974--107328065 Score: 64
Period size: 7 Copynumber: 12.9 Consensus size: 7
107327964 ACTAATTAAT
107327974 CTAAACC
1 CTAAACC
107327981 CTAAAACC
1 CT-AAACC
107327989 CTAAACC
1 CTAAACC
**
107327996 CTAAAAA
1 CTAAACC
*
107328003 ATAAACC
1 CTAAACC
107328010 C-ATAACC
1 CTA-AACC
107328017 CTTAAACC
1 C-TAAACC
107328025 CTAAACC
1 CTAAACC
*
107328032 TTAAATCC
1 CTAAA-CC
107328040 C--AACC
1 CTAAACC
107328045 CTTAAACC
1 C-TAAACC
* *
107328053 ATAATCC
1 CTAAACC
107328060 CTAAAC
1 CTAAAC
107328066 TCATAATCCA
Statistics
Matches: 65, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
5 3 0.05
6 3 0.05
7 40 0.62
8 18 0.28
9 1 0.02
ACGTcount: A:0.46, C:0.36, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:107327994 original size:15 final size:15
Alignment explanation
Indices: 107327974--107328029 Score: 62
Period size: 15 Copynumber: 3.8 Consensus size: 15
107327964 ACTAATTAAT
107327974 CTAAACCCTAAAACC
1 CTAAACCCTAAAACC
*
107327989 CTAAACCCTAAAA-A
1 CTAAACCCTAAAACC
* *
107328003 ATAAACCC-ATAACC
1 CTAAACCCTAAAACC
107328017 CTTAAACCCTAAA
1 C-TAAACCCTAAA
107328030 CCTTAAATCC
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
13 3 0.09
14 7 0.22
15 20 0.62
16 2 0.06
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (15 bp):
CTAAACCCTAAAACC
Found at i:107328035 original size:14 final size:14
Alignment explanation
Indices: 107327975--107328145 Score: 76
Period size: 14 Copynumber: 11.9 Consensus size: 14
107327965 CTAATTAATC
*
107327975 TAAACCCTAAAACCC
1 TAAACCCT-AAACCT
***
107327990 TAAACCCTAAAAAA
1 TAAACCCTAAACCT
*
107328004 TAAACCCATAACCCT
1 TAAACCC-TAAACCT
107328019 TAAACCCTAAACCT
1 TAAACCCTAAACCT
*
107328033 TAAATCCC-AACCCT
1 TAAA-CCCTAAACCT
* * *
107328047 TAAACCATAATCCC
1 TAAACCCTAAACCT
* * *
107328061 TAAACTCATAATCCA
1 TAAAC-CCTAAACCT
*
107328076 TAAACCCTTAAA-AT
1 TAAACCC-TAAACCT
* **
107328090 AATAACTTATAAACCT
1 TA-AAC-CCTAAACCT
* *
107328106 TAAACCCTTAACCA
1 TAAACCCTAAACCT
* * *
107328120 TATACCATAAACCG
1 TAAACCCTAAACCT
107328134 TAAACCCTAAAC
1 TAAACCCTAAAC
107328146 TATAAAGATA
Statistics
Matches: 116, Mismatches: 32, Indels: 17
0.70 0.19 0.10
Matches are distributed among these distances:
13 2 0.02
14 65 0.56
15 47 0.41
16 2 0.02
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:107328058 original size:20 final size:20
Alignment explanation
Indices: 107328021--107328060 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
107328011 ATAACCCTTA
*
107328021 AACCCTAAACCTTAAATCCC
1 AACCCTAAACCATAAATCCC
107328041 AACCCTTAAACCAT-AATCCC
1 AACCC-TAAACCATAAATCCC
107328061 TAAACTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCTAAACCATAAATCCC
Found at i:107328070 original size:15 final size:14
Alignment explanation
Indices: 107328047--107328081 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
107328037 TCCCAACCCT
*
107328047 TAAACCATAATCCC
1 TAAACCATAATCCA
107328061 TAAACTCATAATCCA
1 TAAAC-CATAATCCA
107328076 TAAACC
1 TAAACC
107328082 CTTAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:107328476 original size:14 final size:14
Alignment explanation
Indices: 107328443--107328486 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
107328433 CATAAACCTC
*
107328443 AAACCCTTAACCAT
1 AAACCCTAAACCAT
* *
107328457 ATACCCTAAACCGT
1 AAACCCTAAACCAT
*
107328471 AAACCCTAAACTAT
1 AAACCCTAAACCAT
107328485 AA
1 AA
107328487 TGATAATTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.20
Consensus pattern (14 bp):
AAACCCTAAACCAT
Found at i:107328776 original size:20 final size:20
Alignment explanation
Indices: 107328737--107328776 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
107328727 TGTATTTTAA
*
107328737 TATAATTAAACTAGTTAAAT
1 TATAATTAAACTAGTGAAAT
107328757 TATAATTAAAC-AGATGAAAT
1 TATAATTAAACTAG-TGAAAT
107328777 ATTTTTGGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (20 bp):
TATAATTAAACTAGTGAAAT
Found at i:107335125 original size:51 final size:51
Alignment explanation
Indices: 107334977--107335237 Score: 382
Period size: 51 Copynumber: 5.2 Consensus size: 51
107334967 ACTTCTGATC
* * *
107334977 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
* * *
107335028 AGTGAAAAATGATAAGTGGTAG-CTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
* *
107335078 AGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
* * * *
107335129 AGTGACAAATGATAAGTGGTAG-CTTAGCTACTCTTATCTGATCAGTGGCA
1 AGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
* *
107335179 AGTGATAAGTGATAAGTGGTAACTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
107335230 AGTGATAA
1 AGTGATAA
107335238 ATGTGATCAG
Statistics
Matches: 186, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
50 88 0.47
51 98 0.53
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (51 bp):
AGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
Found at i:107335139 original size:101 final size:101
Alignment explanation
Indices: 107334977--107335240 Score: 456
Period size: 101 Copynumber: 2.6 Consensus size: 101
107334967 ACTTCTGATC
*
107334977 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGAAAAATGATA
1 AGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGAAAAATGATA
107335042 AGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
66 AGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
*
107335078 AGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGACAAATGATA
1 AGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGAAAAATGATA
*
107335143 AGTGGTAGCTTAGCTACTCTTATCTGATCAGTGGCA
66 AGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
* * * * *
107335179 AGTGATAAGTGATAAGTGGTAACTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
1 AGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGAAAAATG
107335241 TGATCAGTGT
Statistics
Matches: 155, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 155 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (101 bp):
AGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGAAAAATGATA
AGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
Found at i:107345003 original size:15 final size:15
Alignment explanation
Indices: 107344945--107345005 Score: 70
Period size: 16 Copynumber: 4.0 Consensus size: 15
107344935 TTTTCTGAAA
107344945 AAACATAATT-TTCT
1 AAACATAATTATTCT
*
107344959 AAATATAAATTATTCT
1 AAACAT-AATTATTCT
* *
107344975 AAATAATGATTATTCT
1 AAA-CATAATTATTCT
107344991 AAACATAATTATTCT
1 AAACATAATTATTCT
107345006 CAAAACGTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 5 0.13
15 14 0.36
16 18 0.46
17 2 0.05
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.43
Consensus pattern (15 bp):
AAACATAATTATTCT
Found at i:107345113 original size:16 final size:17
Alignment explanation
Indices: 107345087--107345118 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
107345077 GACATAACTA
107345087 TTTTCAAACAACAATTG
1 TTTTCAAACAACAATTG
107345104 TTTT-AAACAACAATT
1 TTTTCAAACAACAATT
107345119 ATTCTAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.38
Consensus pattern (17 bp):
TTTTCAAACAACAATTG
Found at i:107345126 original size:16 final size:16
Alignment explanation
Indices: 107345092--107345126 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
107345082 AACTATTTTC
* *
107345092 AAACAACAATTGTTTT
1 AAACAACAATTATTCT
107345108 AAACAACAATTATTCT
1 AAACAACAATTATTCT
107345124 AAA
1 AAA
107345127 TAAGAGTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.03, T:0.31
Consensus pattern (16 bp):
AAACAACAATTATTCT
Found at i:107350327 original size:26 final size:26
Alignment explanation
Indices: 107350298--107350350 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
107350288 TTTACAGTTT
107350298 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
107350324 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
107350350 T
1 T
107350351 GCATGCTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:107361244 original size:18 final size:19
Alignment explanation
Indices: 107361213--107361252 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
107361203 GGGAAGAGAG
107361213 AAAAATAAAAATAAAAATA
1 AAAAATAAAAATAAAAATA
* *
107361232 AAAAAT-AAGATAAAAGTA
1 AAAAATAAAAATAAAAATA
107361250 AAA
1 AAA
107361253 TTTATTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (19 bp):
AAAAATAAAAATAAAAATA
Found at i:107365756 original size:16 final size:17
Alignment explanation
Indices: 107365731--107365763 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
107365721 TATATTTTTA
*
107365731 TATATGTAAAA-AAATT
1 TATATCTAAAATAAATT
107365747 TATATCTAAAATAAATT
1 TATATCTAAAATAAATT
107365764 CACAGGATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (17 bp):
TATATCTAAAATAAATT
Found at i:107368172 original size:16 final size:15
Alignment explanation
Indices: 107368151--107368180 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
107368141 TAATTTGAGA
107368151 TTTAATATTTATATAT
1 TTTAATATTT-TATAT
107368167 TTTAATATTTTATA
1 TTTAATATTTTATA
107368181 AAATTTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTAATATTTTATAT
Found at i:107369826 original size:15 final size:16
Alignment explanation
Indices: 107369802--107369831 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
107369792 ATGTGTCTCT
107369802 TTTTTGTTAATATTTA
1 TTTTTGTTAATATTTA
107369818 TTTTT-TTAATATTT
1 TTTTTGTTAATATTT
107369832 TGCTATACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (16 bp):
TTTTTGTTAATATTTA
Found at i:107371135 original size:13 final size:13
Alignment explanation
Indices: 107371119--107371143 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107371109 AATTTAACCC
107371119 TTCATTTTACATT
1 TTCATTTTACATT
107371132 TTCATTTTACAT
1 TTCATTTTACAT
107371144 AGTATGATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (13 bp):
TTCATTTTACATT
Found at i:107372479 original size:30 final size:30
Alignment explanation
Indices: 107372443--107372501 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
107372433 ATCATAAAGA
*
107372443 AACCTAGTACATCTAACATTAGGTTTATCC
1 AACCTAGTACATCTAACATAAGGTTTATCC
107372473 AACCTAGTACATCTAACATAAGGTTTATC
1 AACCTAGTACATCTAACATAAGGTTTATC
107372502 AACTATCTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (30 bp):
AACCTAGTACATCTAACATAAGGTTTATCC
Found at i:107375959 original size:94 final size:94
Alignment explanation
Indices: 107375793--107375967 Score: 228
Period size: 94 Copynumber: 1.9 Consensus size: 94
107375783 TCACTTGTGT
* *
107375793 GTGCTAGTGTAAGATATGTCTTGGACATGCATCAACCACATTATGAGAGCCAGAGTAAGACCATG
1 GTGCTAGTGTAAGACATGTCTTGGACATGCATCAACCACATGATGAGAGCCAGAGTAAGACCATG
107375858 TCCGGGACATGGCATCAGCGTAGATACAA
66 TCCGGGACATGGCATCAGCGTAGATACAA
** * * * * *
107375887 GTGCTAGTGTAAGACATGT-TTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTATGA-TA
1 GTGCTAGTGTAAGACATGTCTT-GGACATGCATCAACCAC-ATGATGAGAGCCAGAGTAAGACCA
*
107375950 TGTCTGGGACATGGCATC
64 TGTCCGGGACATGGCATC
107375968 GGCCTTGACG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
93 2 0.03
94 50 0.72
95 17 0.25
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (94 bp):
GTGCTAGTGTAAGACATGTCTTGGACATGCATCAACCACATGATGAGAGCCAGAGTAAGACCATG
TCCGGGACATGGCATCAGCGTAGATACAA
Found at i:107375981 original size:48 final size:48
Alignment explanation
Indices: 107375892--107376019 Score: 186
Period size: 48 Copynumber: 2.7 Consensus size: 48
107375882 TACAAGTGCT
* *
107375892 AGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCGATGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGACGATGATAGCC
* * * *
107375939 AGTGTATGATATGTCTGGGACATGGCATCGGCCTTGACGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGACGATGATAGCC
107375987 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC
107376020 AACTCACCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 20 0.28
48 29 0.41
49 22 0.31
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGACGATGATAGCC
Found at i:107376634 original size:11 final size:11
Alignment explanation
Indices: 107376620--107376664 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
107376610 AGATAAATAT
107376620 TATTTTATTAA
1 TATTTTATTAA
*
107376631 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
107376644 TATTTTATTAT
1 TATTTTATTAA
107376655 TATTTTATTA
1 TATTTTATTA
107376665 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:107378861 original size:46 final size:46
Alignment explanation
Indices: 107378794--107379113 Score: 480
Period size: 46 Copynumber: 7.0 Consensus size: 46
107378784 AGTGTGCTCT
107378794 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
107378840 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
107378886 CTGATATGAAATGTGTAAGACCATGGTTGAATGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
107378932 CTGATATGAAATGTATAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
107378978 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
107379024 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
107379070 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
107379114 TCACGTCAAA
Statistics
Matches: 252, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 251 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:107387772 original size:14 final size:13
Alignment explanation
Indices: 107387753--107387783 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
107387743 AGGGTTATTC
107387753 TTTTTCTTCTTTTT
1 TTTTTCTT-TTTTT
107387767 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
107387780 TTTT
1 TTTT
107387784 GGGGGGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:107387776 original size:10 final size:11
Alignment explanation
Indices: 107387753--107387782 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
107387743 AGGGTTATTC
*
107387753 TTTTTCTTCTT
1 TTTTTTTTCTT
107387764 TTTTTTTTCTT
1 TTTTTTTTCTT
107387775 TTTTTTTT
1 TTTTTTTT
107387783 TGGGGGGGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:107391124 original size:132 final size:132
Alignment explanation
Indices: 107390887--107391150 Score: 501
Period size: 132 Copynumber: 2.0 Consensus size: 132
107390877 CTTAACCTCG
*
107390887 ACCTTAGATCTTGCAAGCTTCTATTATTACCCAAAGTTTCCCTTTATCTTGAAACCACATACAAA
1 ACCTTAGATCTTGCAAGCTTCTATTATCACCCAAAGTTTCCCTTTATCTTGAAACCACATACAAA
107390952 TGTATTTAAATTCCTTCAACCCTGAGGGGTTTAAAGAGTCCATAACCTCTTTAAGGTCCTCATAT
66 TGTATTTAAATTCCTTCAACCCTGAGGGGTTTAAAGAGTCCATAACCTCTTTAAGGTCCTCATAT
107391017 AA
131 AA
107391019 ACCTTAGATCTTGCAAGCTTCTATTATCACCCAAAGTTTCCCTTTATCTTGAAACCACATACAAA
1 ACCTTAGATCTTGCAAGCTTCTATTATCACCCAAAGTTTCCCTTTATCTTGAAACCACATACAAA
* *
107391084 TGTATTTAAATTCCTTCAACCTTGAGGGGTTTATAGAGTCCATAACCTCTTTAAGGTCCTCATAT
66 TGTATTTAAATTCCTTCAACCCTGAGGGGTTTAAAGAGTCCATAACCTCTTTAAGGTCCTCATAT
107391149 AA
131 AA
107391151 TCCATCGGTG
Statistics
Matches: 129, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 129 1.00
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.34
Consensus pattern (132 bp):
ACCTTAGATCTTGCAAGCTTCTATTATCACCCAAAGTTTCCCTTTATCTTGAAACCACATACAAA
TGTATTTAAATTCCTTCAACCCTGAGGGGTTTAAAGAGTCCATAACCTCTTTAAGGTCCTCATAT
AA
Found at i:107410131 original size:3 final size:3
Alignment explanation
Indices: 107410113--107410151 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
107410103 AAATAGAAGA
107410113 TAT TAT T-T TAT T-T TAT TAT TAT TATT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT T
107410152 TTAATTTAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.12
3 26 0.79
4 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (3 bp):
TAT
Found at i:107410131 original size:13 final size:14
Alignment explanation
Indices: 107410113--107410154 Score: 70
Period size: 13 Copynumber: 3.1 Consensus size: 14
107410103 AAATAGAAGA
107410113 TATTATT-TTATTT
1 TATTATTATTATTT
107410126 TATTATTATTA-TT
1 TATTATTATTATTT
107410139 TATTATTATTATTT
1 TATTATTATTATTT
107410153 TA
1 TA
107410155 ATTTAGCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 20 0.74
14 7 0.26
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TATTATTATTATTT
Found at i:107426460 original size:49 final size:49
Alignment explanation
Indices: 107426388--107426485 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
107426378 ATTCGTCGTT
*
107426388 TTGGTTGAAAGGGCTTGTAAAGCCGAAGATCTCAGTATAGAAAAGAGAA
1 TTGGTTGAAAGGGCTTGTAAAGCCGAAGATCTCAGTAAAGAAAAGAGAA
*
107426437 TTGGTTGAAAGGGCTTGTAAAGCCGAAGATCTCGGTAAAGAAAAGAGAA
1 TTGGTTGAAAGGGCTTGTAAAGCCGAAGATCTCAGTAAAGAAAAGAGAA
107426486 AAACAGACTC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.39, C:0.10, G:0.30, T:0.21
Consensus pattern (49 bp):
TTGGTTGAAAGGGCTTGTAAAGCCGAAGATCTCAGTAAAGAAAAGAGAA
Found at i:107428727 original size:29 final size:28
Alignment explanation
Indices: 107428652--107428772 Score: 125
Period size: 29 Copynumber: 4.2 Consensus size: 28
107428642 AAGCCTACAT
* *
107428652 ACATGCATATGGCCTACTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
* * * * *
107428680 TCGTTCATATGGCCTATTAGGCTCAATTC
1 ACATTCATATGGCCCACTAGGCCCAA-TC
* * *
107428709 ACATTCATATGGCCCATTAGGATCAAATC
1 ACATTCATATGGCCCACTAGG-CCCAATC
107428738 ACATTCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
*
107428766 ACTTTCA
1 ACATTCA
107428773 CAGTCATACT
Statistics
Matches: 76, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
28 32 0.42
29 42 0.55
30 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCCAATC
Found at i:107433704 original size:16 final size:15
Alignment explanation
Indices: 107433683--107433730 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
107433673 GATGTGAATA
107433683 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
*
107433699 ATAAAATATCAAAAT
1 ATAAAATATTAAAAT
107433714 ATCAAAATATTAAAAT
1 AT-AAAATATTAAAAT
107433730 A
1 A
107433731 ATAATAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 7 0.24
16 22 0.76
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:107433706 original size:24 final size:24
Alignment explanation
Indices: 107433679--107433734 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
107433669 TAATGATGTG
*
107433679 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
107433703 AAT-ATCAAAATATCAAAATATTAA
1 AATAAT-AAAATATCAAAATATTAA
107433727 AATAATAA
1 AATAATAA
107433735 TAATTAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
23 8 0.29
24 18 0.64
25 2 0.07
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:107433714 original size:8 final size:7
Alignment explanation
Indices: 107433690--107433730 Score: 55
Period size: 8 Copynumber: 5.4 Consensus size: 7
107433680 ATAATAAAAT
107433690 ATATAAA
1 ATATAAA
107433697 ATATAAA
1 ATATAAA
107433704 ATATCAAA
1 ATAT-AAA
107433712 ATATCAAA
1 ATAT-AAA
107433720 ATATTAAA
1 ATA-TAAA
107433728 ATA
1 ATA
107433731 ATAATAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 11 0.34
8 20 0.62
9 1 0.03
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (7 bp):
ATATAAA
Found at i:107433994 original size:25 final size:24
Alignment explanation
Indices: 107433966--107434096 Score: 94
Period size: 25 Copynumber: 5.6 Consensus size: 24
107433956 AAAAATATAT
*
107433966 ATATATAAATAATATAATATTAAA
1 ATATATACATAATATAATATTAAA
* * *
107433990 GATATATACATAAAATAGTATAAAA
1 -ATATATACATAATATAATATTAAA
* * *
107434015 TATATATACGTAATATAAAATTTAA
1 -ATATATACATAATATAATATTAAA
*
107434040 A-ATATACCT-A-AT-ATATTAAA
1 ATATATACATAATATAATATTAAA
* * *
107434060 AAAAATATATAATATAATATTAAGA
1 ATATATACATAATATAATATTAA-A
107434085 A-ATATA-ATAATA
1 ATATATACATAATA
107434097 ACAAAAAAAG
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
20 7 0.08
21 7 0.08
22 2 0.02
23 15 0.18
24 12 0.14
25 40 0.48
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (24 bp):
ATATATACATAATATAATATTAAA
Found at i:107434029 original size:50 final size:44
Alignment explanation
Indices: 107433966--107434094 Score: 118
Period size: 48 Copynumber: 2.8 Consensus size: 44
107433956 AAAAATATAT
*
107433966 ATATATAAATAATATAATATTAAAGATATATACATAAAATAGTATAAA
1 ATATATATATAATATAATATT-AAGA-ATATACATAAAATA-T-TAAA
* * *
107434014 ATATATATACGTAATATAAAATTTAA-AATATACCTAATATATTAAA
1 ATATATATA--TAATATAATA-TTAAGAATATACATAAAATATTAAA
* *
107434060 AAAAATATATAATATAATATTAAGAAATATA-ATAA
1 ATATATATATAATATAATATTAAG-AATATACATAA
107434095 TAACAAAAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 14
0.76 0.09 0.16
Matches are distributed among these distances:
43 4 0.06
44 12 0.18
45 6 0.09
46 11 0.16
47 1 0.01
48 20 0.29
49 1 0.01
50 11 0.16
51 2 0.03
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (44 bp):
ATATATATATAATATAATATTAAGAATATACATAAAATATTAAA
Found at i:107434603 original size:30 final size:30
Alignment explanation
Indices: 107434567--107434711 Score: 229
Period size: 30 Copynumber: 4.8 Consensus size: 30
107434557 TAGGTACAAG
* *
107434567 TGGTGGTGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
107434597 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
107434627 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
107434657 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
107434687 TGGTGGTGGAAAAGGTGTAGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
107434712 TGAGAAAAGT
Statistics
Matches: 108, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
29 2 0.02
30 106 0.98
ACGTcount: A:0.20, C:0.04, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:107435514 original size:14 final size:14
Alignment explanation
Indices: 107435478--107435528 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
107435468 GAGTTGATTT
* *
107435478 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
107435492 TTGGAAAAAACAGAAA
1 TT-G-AAAAACAGAAA
*
107435508 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
107435522 TT-AAAAA
1 TTGAAAAA
107435529 GACCTTAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 14 0.45
15 2 0.06
16 11 0.35
ACGTcount: A:0.63, C:0.04, G:0.14, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:107435637 original size:73 final size:73
Alignment explanation
Indices: 107435551--107435840 Score: 229
Period size: 73 Copynumber: 3.7 Consensus size: 73
107435541 TGAGCCGAGA
107435551 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTG
1 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTG
107435616 TCCTGAGG
66 TCCTGAGG
* * ** **
107435624 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACAAACAGAAATTGAAGAACAGAAATT
1 CTCAACTCACCTCTCGCAATATGAGTT-A--ATTTTTGACAAACAGAAATT---GAA-ATTACCT
* ** ** *
107435689 GAAAAGAACTCAGCATGTGAG
59 -CAGCG-TGTC--C-TGAG-G
* *
107435710 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTC
1 CTCA-ACTC-----ACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTC
*
107435775 AGCGTGTCCCGAGG
60 AGCGTGTCCTGAGG
* * * * *
107435789 CTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAA
1 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAA
107435841 AAACAGAAAT
Statistics
Matches: 164, Mismatches: 34, Indels: 38
0.69 0.14 0.16
Matches are distributed among these distances:
73 66 0.40
74 1 0.01
76 18 0.11
78 3 0.02
79 7 0.04
80 5 0.03
81 3 0.02
82 2 0.01
83 2 0.01
84 3 0.02
85 6 0.04
86 7 0.04
87 3 0.02
89 18 0.11
91 1 0.01
92 19 0.12
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (73 bp):
CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTG
TCCTGAGG
Found at i:107435684 original size:14 final size:14
Alignment explanation
Indices: 107435665--107435691 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
107435655 TTTTTTTACA
107435665 AACAGAAATTGAAG
1 AACAGAAATTGAAG
107435679 AACAGAAATTGAA
1 AACAGAAATTGAA
107435692 AAGAACTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.19, T:0.15
Consensus pattern (14 bp):
AACAGAAATTGAAG
Found at i:107435687 original size:165 final size:167
Alignment explanation
Indices: 107435496--107436004 Score: 704
Period size: 165 Copynumber: 3.0 Consensus size: 167
107435486 TATAAATTGG
*
107435496 AAAAAACAGAAATTGAAAAGCAGAAATTAAAAAGACCTTAGCATGTGAGCCGAGACTCAACTCAC
1 AAAAAACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCAC
107435561 CTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
66 CTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCC-GAGGCT
107435626 CAACTCACCTCTCGCAATATGAGTTGATTTTTT-T-TT
130 CAACTCACCTCTCGCAATATGAGTTGATTTTTTATATT
* * * * *
107435662 -ACAAACAGAAATTGAAGAA-CAGAAATTGAAAAGAACTCAGCATGTGAGCTGAGGCTCAACTCA
1 AAAAAACAGAAATTGAA-AAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCA
107435725 CCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGC
65 CCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT-CCGAGGC
*
107435790 TCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAATATAAATT
129 TCAACTCACCTCTCGCAATATGAGTTGATTTTT------TAT--ATT
*
107435837 GAAAAAACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCAAGACTCAACTCA
1 -AAAAAACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCA
* * * *
107435902 CCTCTCACAATATGAGTTGATTTTTTTTACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCC
65 CCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAATTG-AAATTACCTCAGCGTGT---CC
*
107435967 AAGGCTCAACTCACCTCTCGCAATATGAGTTG-TTTTTT
124 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
107436005 GAAAAATAGA
Statistics
Matches: 303, Mismatches: 20, Indels: 31
0.86 0.06 0.09
Matches are distributed among these distances:
165 148 0.49
166 4 0.01
171 1 0.00
172 1 0.00
175 3 0.01
176 2 0.01
177 71 0.23
178 1 0.00
179 19 0.06
180 16 0.05
181 5 0.02
182 32 0.11
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (167 bp):
AAAAAACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCAC
CTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTTTATATT
Found at i:107435840 original size:14 final size:14
Alignment explanation
Indices: 107435821--107435870 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
107435811 GAGTTGATTT
* *
107435821 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
107435835 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
107435850 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
107435864 TT-AAAAA
1 TTGAAAAA
107435871 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:107435980 original size:78 final size:77
Alignment explanation
Indices: 107435850--107436090 Score: 304
Period size: 78 Copynumber: 3.2 Consensus size: 77
107435840 AAAACAGAAA
* * * *
107435850 TTGAAAAGCAGAAATT-AAAAAGACCTCAGCATGTGAGCCAAGACTCAACTCACCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGT-AGCCAAGGCTCAACTCACCTCTCGCAATA
107435914 TGAGTTGATTTTT
65 TGAGTTGATTTTT
* * * *
107435927 TTTACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGT-AGCCAAGGCTCAACTCACCTCTCGCAATA
107435992 TGAGTTG--TTTT
65 TGAGTTGATTTTT
*
107436003 TTGAAAAATAGAAATTG-AAAACACCTCAGCATGT-G---AGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAAGGCTCAACTCACCTCTCGCAATAT
107436063 GAGTTGA--TTT
66 GAGTTGATTTTT
*
107436073 TTGAAAAACATAAATTGA
1 TTGAAAAACAGAAATTGA
107436091 GCAGAAATTG
Statistics
Matches: 146, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
70 49 0.34
73 1 0.01
75 15 0.10
76 18 0.12
77 13 0.09
78 50 0.34
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (77 bp):
TTGAAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTT
Found at i:107436055 original size:70 final size:70
Alignment explanation
Indices: 107435850--107436090 Score: 266
Period size: 70 Copynumber: 3.3 Consensus size: 70
107435840 AAAACAGAAA
* * * *
107435850 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCAAGACTCAACTCACCTCTCACAATAT
1 TTGAAAAACAGAAATTGAAAACACCTCAGCATGTGAG----G-CTCAACTCACCTCTCGCAATAT
107435915 GAGTTGATTTTT
61 GAGTTG--TTTT
* * * *
107435927 TTTACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTG-AAAACACCTCAGCATGT--G---AGGCTCAACTCACCTCTCGCAATA
107435992 TGAGTTGTTTT
60 TGAGTTGTTTT
*
107436003 TTGAAAAATAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 TTGAAAAACAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
107436068 GATTT
66 GTTTT
*
107436073 TTGAAAAACATAAATTGA
1 TTGAAAAACAGAAATTGA
107436091 GCAGAAATTG
Statistics
Matches: 143, Mismatches: 15, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
70 50 0.35
73 1 0.01
75 15 0.10
76 18 0.13
77 13 0.09
78 42 0.29
79 1 0.01
80 1 0.01
83 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (70 bp):
TTGAAAAACAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GTTTT
Found at i:107436216 original size:71 final size:71
Alignment explanation
Indices: 107436095--107436232 Score: 231
Period size: 71 Copynumber: 1.9 Consensus size: 71
107436085 AATTGAGCAG
* * *
107436095 AAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCAGCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTT
107436160 GATGAT
66 GATGAT
* *
107436166 AAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTT
107436231 GA
66 GA
107436233 ATTAAAACAG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTT
GATGAT
Found at i:107436307 original size:159 final size:154
Alignment explanation
Indices: 107435972--107436323 Score: 428
Period size: 159 Copynumber: 2.2 Consensus size: 154
107435962 AAGCCAAGGC
107435972 TCAACTCACCTCTCGCAATATGAGTTG-TTTTTTGAAAAATAGAAATTGAAAACACCTCAGCATG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATA-AAATTGAAAACACCTCAGCATG
* * * *
107436036 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAATTG
65 TGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAACAGAAATGG
* *
107436101 AAAATACCTCAACGGGTCTTGAGGT
130 AAAACACCTCAACGCGTCTTGAGGT
* ** * *
107436126 TCAACTCAGCTCTCGCAATATGAGTTGATTTTTTG-ATGAT-AAATTGAAAATACCTCAATGTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAAATTGAAAACACCTC-A-G-CA
*
107436189 CT-TGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAA
63 -TGTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTG-A--AAAACAGAAATTG--AA
*
107436253 TAGAAATGGAAAACACCTC-A-GCGTCTTGAGGT
121 CAGAAATGGAAAACACCTCAACGCGTCTTGAGGT
*
107436285 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA
107436324 CACATAAATT
Statistics
Matches: 169, Mismatches: 16, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
152 15 0.09
153 1 0.01
154 30 0.18
155 40 0.24
156 7 0.04
157 1 0.01
159 49 0.29
160 8 0.05
161 18 0.11
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (154 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAAATTGAAAACACCTCAGCATGT
GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAACAGAAATGGA
AAACACCTCAACGCGTCTTGAGGT
Found at i:107436474 original size:75 final size:74
Alignment explanation
Indices: 107436383--107436648 Score: 349
Period size: 77 Copynumber: 3.6 Consensus size: 74
107436373 CGACGTGTGG
* *
107436383 CCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTAAAAAGAAAAAATTGAAAATAC
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAA-AAAAAATTGAAAATAC
107436448 CTCAGCGTGT
65 CTCAGCGTGT
* * *
107436458 CCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAAT
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-A-AAAAA-AAAAATTGAAAAT
*
107436523 ATCTCAGCGTGT
63 ACCTCAGCGTGT
* * * * *
107436535 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACC
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAAAAAAATTGAAAATACC
107436599 TCAGC--GT
66 TCAGCGTGT
** *
107436606 CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTT
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
107436649 TGAAACATAA
Statistics
Matches: 169, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
71 36 0.21
72 5 0.03
73 17 0.10
74 3 0.02
75 41 0.24
76 7 0.04
77 60 0.36
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (74 bp):
CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAAAAAAATTGAAAATACC
TCAGCGTGT
Found at i:107436612 original size:417 final size:416
Alignment explanation
Indices: 107435971--107436726 Score: 994
Period size: 417 Copynumber: 1.8 Consensus size: 416
107435961 TAAGCCAAGG
* *
107435971 CTCAACTCACCTCTCGCAATATGAGTTGTTTTTTGAAAAATAGAAATTGAAAACACCTCAGCATG
1 CTCAACTCACCTCTCGCAATATGAGTTGTTTTTTGAAAAAAAAAAATTGAAAACACCTCAGCATG
*
107436036 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAATTG
66 TGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACATAAATT--G-AGAAATTG
* * * ** *
107436101 AAAATACCTCAACGGGTCTTGAGGTTCAACTCAGCTCTCGCAATATGAGTTGATTTTTTGATGAT
128 AAAATACCTCAACGGGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAACAA
* *
107436166 AAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTT
193 AAATTGAAAATACCTCAATGCGACTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
* * * *
107436231 GAATTAAAACAGAAATTGAAAATA-G-AAATGGAAAACACCTCAGC-GTCTTGAGGTTCAACTCA
258 ---TTAAAACAGAAATTAAAAAAACGAAAATGGAAAACACCTCAGCGGTCCTGAGGCTCAACTCA
107436293 CCTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAAAAAAAGAAATTAAAAATAG
320 CCTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAAAAAAAGAAATTAAAAATAG
107436358 AATTTGAAAGGACCTCGACGTGTGGCCCGAGA
385 AATTTGAAAGGACCTCGACGTGTGGCCCGAGA
*
107436390 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTT-AAAAAGAAAAAATTGAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTG-TT-TTTTGAAAAA-AAAAAATTGAAAACACCTCAGC
* *** * *
107436454 GTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGATA-A-AAA-T-AGAAT
63 ATGT---GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACATAAATTGAGAAA
* * *
107436515 TTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAC
125 TTGAAAATACCTCAACGGGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG--
* * * *
107436579 AAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
188 -AACAAAAATTGAAAATACCTCAATGCGACTTGAGGCTCAACTCACCTCTCACAATATGAGTTGA
* * * *
107436642 TTTTTTTTGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAA
252 TTTTTTTTAAAACAGAAATTAAAAAAACGAAAATGGAAAACACCTCAGCG-GTCCTGAGGCTCAA
107436707 CTCACCTCTCGCAATATGAG
316 CTCACCTCTCGCAATATGAG
107436727 TTGAAATTAA
Statistics
Matches: 291, Mismatches: 33, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
414 17 0.06
415 1 0.00
416 23 0.08
417 95 0.33
418 33 0.11
419 45 0.15
420 7 0.02
421 27 0.09
422 3 0.01
423 1 0.00
424 39 0.13
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (416 bp):
CTCAACTCACCTCTCGCAATATGAGTTGTTTTTTGAAAAAAAAAAATTGAAAACACCTCAGCATG
TGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACATAAATTGAGAAATTGAAA
ATACCTCAACGGGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAACAAAAA
TTGAAAATACCTCAATGCGACTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTA
AAACAGAAATTAAAAAAACGAAAATGGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACCTCTC
GCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAAAAAAAGAAATTAAAAATAGAATTTG
AAAGGACCTCGACGTGTGGCCCGAGA
Found at i:107436706 original size:160 final size:159
Alignment explanation
Indices: 107436515--107436804 Score: 458
Period size: 160 Copynumber: 1.8 Consensus size: 159
107436505 AAAATAGAAT
* **
107436515 TTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-A-A
* ** * *
107436580 AACA-AAAATTGAAATTACCTCAGCGT-CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
63 AACACAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
107436643 TTTTTTTGAAACATAAATTAAAAAAACGAAAA
128 TTTTTTTGAAACATAAATTAAAAAAACGAAAA
107436675 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
*
107436740 ACAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTT
66 ACAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
107436805 GAAAAAGTAG
Statistics
Matches: 119, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
157 5 0.04
158 22 0.18
159 37 0.31
160 55 0.46
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (159 bp):
TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
ACAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
TTTTGAAACATAAATTAAAAAAACGAAAA
Found at i:107436785 original size:70 final size:73
Alignment explanation
Indices: 107436657--107436796 Score: 232
Period size: 70 Copynumber: 2.0 Consensus size: 73
107436647 TTTGAAACAT
*
107436657 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
107436722 ATGAGTTG
66 ATGAGTTG
* *
107436730 AAATT-AAAACAC-AAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTTGCAAT
1 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
107436792 ATGAG
66 ATGAG
107436797 CTGATTTTGA
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
70 30 0.47
71 23 0.36
72 6 0.09
73 5 0.08
ACGTcount: A:0.39, C:0.24, G:0.16, T:0.22
Consensus pattern (73 bp):
AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTG
Found at i:107437052 original size:77 final size:75
Alignment explanation
Indices: 107436955--107437234 Score: 327
Period size: 72 Copynumber: 3.7 Consensus size: 75
107436945 GTAATCTGAA
*
107436955 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACCTCAGC
*
107437020 ATGTGAACCGAG
66 A-GTG-TCCGAG
* *
107437032 GCTCAACTCACCTCTCGCAATATAAGTTAATTTTTTTTTTGAAAACAGAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTTTTTAAAAACAGAAATTGAAAATACCTCA
* **
107437097 AC-GTGTTTTGAG
64 GCAGTG-TCCGAG
** * * *
107437109 GCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCAGC
1 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACCTCAGC
107437171 -GTGTCCTGAG
66 AGTGTCC-GAG
** * *
107437181 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAA
1 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAAAAACAGAAATTGAA
107437235 GAACAGAAAT
Statistics
Matches: 177, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
71 1 0.01
72 64 0.36
75 18 0.10
77 61 0.34
79 33 0.19
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.33
Consensus pattern (75 bp):
GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACCTCAGC
AGTGTCCGAG
Found at i:107437241 original size:14 final size:14
Alignment explanation
Indices: 107437222--107437248 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
107437212 TTTTTTTAAC
107437222 AACAGAAATTGAAG
1 AACAGAAATTGAAG
107437236 AACAGAAATTGAA
1 AACAGAAATTGAA
107437249 AAGACCTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.19, T:0.15
Consensus pattern (14 bp):
AACAGAAATTGAAG
Found at i:107437256 original size:89 final size:89
Alignment explanation
Indices: 107437142--107437306 Score: 217
Period size: 91 Copynumber: 1.8 Consensus size: 89
107437132 AAGTTGAATT
** * ** **
107437142 TTGAAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATG
1 TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAGGCAAAACTCACCTCTCGCAATATG
*
107437205 AGTTGATTTTTTTTAACAACAGAAA
65 AGTTAATTTTTTTTAACAACAGAAA
107437230 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCAAAACTCACCTCTCGCAATAT
1 TTGAA-AACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCAAAACTCACCTCTCGCAATAT
107437295 GAGTTAATTTTT
64 GAGTTAATTTTT
107437307 GACAAACAGA
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
88 5 0.08
89 22 0.34
91 36 0.55
92 2 0.03
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (89 bp):
TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCAAAACTCACCTCTCGCAATATGA
GTTAATTTTTTTTAACAACAGAAA
Found at i:107437316 original size:89 final size:88
Alignment explanation
Indices: 107437142--107437324 Score: 212
Period size: 89 Copynumber: 2.1 Consensus size: 88
107437132 AAGTTGAATT
** * ** **
107437142 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCAAAACTCACCTCTCGCAATATGAG
* *
107437207 TTGATTTTTTTTAACAACAGAAA
66 TTGATATTTTTGAACAACAGAAA
107437230 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCAAAACTCACCTCTCGCAATA
1 TTGAA-AACAGAAATTGAAAAGACCTCAGC--GTG-GCCTGAGGCAAAACTCACCTCTCGCAATA
107437294 TGAGTT-A-ATTTTTG-ACAAACAGAAA
62 TGAGTTGATATTTTTGAAC-AACAGAAA
107437319 TTGAAA
1 TTGAAA
107437325 TTACCTCAGC
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
88 8 0.10
89 40 0.49
90 1 0.01
91 30 0.37
92 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (88 bp):
TTGAAAACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCAAAACTCACCTCTCGCAATATGAG
TTGATATTTTTGAACAACAGAAA
Found at i:107437442 original size:77 final size:77
Alignment explanation
Indices: 107436950--107437606 Score: 474
Period size: 77 Copynumber: 8.5 Consensus size: 77
107436940 AGTGTGTAAT
* * * *
107436950 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTTAAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAATTA
*
107437013 CCTCAGCATGTGAAC
66 CCTCAGC--GT-ATC
* *
107437028 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTAATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAATTA
* * *
107437092 CCTCAACGTGTT
66 CCTCAGCGTATC
* ** *
107437104 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-----ATTTTGAAAACAGAAATTGAAATTA
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAATTA
*
107437164 CCTCAGCGTGTC
66 CCTCAGCGTATC
** *
107437176 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTTTT-AACAACAGAAATTGAAGAA
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAA-AACAGAAATT---GAA
** ** * * *
107437238 CAGAAATTGAAAAGACCTCAGC
62 -ATTACCT---CAG-CGT-ATC
* * * ** * * ** ** * **
107437260 ATGTGAGC-CGAGGCAAAACTCAC-CTCTCGCAA-TATGAGTTAATTTTTGACAAACAGAAATTG
1 CTGAG-GCTC-A-ACTCACCTCTCGCAAT-ATAAGT-TGATTTTTTTTTTGA-AAACAGAAATTG
*
107437322 AAATTACCTCAGCGTGTGAAC
60 AAATTACCTCAGC--GT-ATC
*
107437343 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAATTA
*
107437407 CCTCAACGTATC
66 CCTCAGCGTATC
* ** * *
107437419 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-----ATTTTGAAAATAGAAATTGAAATTA
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAATTA
*
107437479 CCTCAGCGTGTC
66 CCTCAGCGTATC
** *
107437491 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTT-AACAACAGAAATTGAAATT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAA-AACAGAAATTGAAATT
*
107437555 ACCTCAGCGTGTC
65 ACCTCAGCGTATC
* *
107437568 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
107437607 GAAAAACAAA
Statistics
Matches: 460, Mismatches: 82, Indels: 75
0.75 0.13 0.12
Matches are distributed among these distances:
72 131 0.28
74 2 0.00
75 14 0.03
76 4 0.01
77 163 0.35
78 4 0.01
79 59 0.13
80 20 0.04
81 7 0.02
82 7 0.02
83 5 0.01
84 5 0.01
85 9 0.02
86 12 0.03
88 6 0.01
89 11 0.02
90 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (77 bp):
CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAATTA
CCTCAGCGTATC
Found at i:107437773 original size:72 final size:70
Alignment explanation
Indices: 107437624--107437800 Score: 205
Period size: 72 Copynumber: 2.5 Consensus size: 70
107437614 AAAAATTAAA
* * * * * * **
107437624 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
107437688 CCCCG
66 CCCCG
*
107437693 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAGATTAAAAATACCTCAACG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAAAAAAA-ACTAAAAATACCTCAACG
* **
107437758 TGTCTTG
64 TGCCCCG
107437765 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
107437801 CCTTAGAAAG
Statistics
Matches: 92, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
69 26 0.28
70 5 0.05
71 8 0.09
72 53 0.58
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:107438634 original size:43 final size:40
Alignment explanation
Indices: 107438574--107438679 Score: 108
Period size: 41 Copynumber: 2.6 Consensus size: 40
107438564 GTTTCATTAG
*
107438574 GACGCCC-TCTCGGGTTTTCATCCTAAT-CTTTTTACTAATCAA
1 GACGCCCTTTTCGGGTTTTCATCCTAATCCTTTTT--T--TCAA
** *
107438616 GACGCCCTTTTCGGGTTTTCGCCCTAATCCCTTTTTTTTAA
1 GACGCCCTTTTCGGGTTTTCATCCTAAT-CCTTTTTTTCAA
*
107438657 GATGCCCTTTTCGGGTTTTCATC
1 GACGCCCTTTTCGGGTTTTCATC
107438680 TTAAGCATAA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
41 23 0.43
42 7 0.13
43 18 0.33
45 6 0.11
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (40 bp):
GACGCCCTTTTCGGGTTTTCATCCTAATCCTTTTTTTCAA
Found at i:107445996 original size:48 final size:47
Alignment explanation
Indices: 107445920--107446285 Score: 326
Period size: 48 Copynumber: 7.6 Consensus size: 47
107445910 TATGTGTGCT
* *
107445920 AGTGTAAGACCATGTTTGGAACAAGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACA-CATGAGAGCC
* * *
107445968 AGCGTAAGACCATGTTTGGAACATGGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACA-CATGAGAGCC
* * * ***
107446016 AGTATAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCA-CACATGAGAGCC
* * * * * *
107446064 AGAGTAAGACCATGTCTGGGACATGGCATCAG-CATCGAAATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCA-C-ACATGAGAGCC
* * * *
107446112 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTA-ACATGTGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCC--ACACATGAGAGCC
* * * * *
107446160 AGTGTAAGACCATGTCTAGG-ACATGGCATCAGCCTCGACATGTGAGCT
1 AGTGTAAGACCATGT-TTGGAACATGGCATCGGCCAC-ACATGAGAGCC
* * * * *
107446208 AGTGTAAGACCATGTTTGGGATATGGCATTGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCAC-ACATGAGAGCC
107446256 AGTGTAAGACCATGTCTTGG-ACATGGCATC
1 AGTGTAAGACCATGT-TTGGAACATGGCATC
107446286 CGCAGTTTAC
Statistics
Matches: 274, Mismatches: 34, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
47 5 0.02
48 261 0.95
49 7 0.03
51 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACACATGAGAGCC
Found at i:107446088 original size:96 final size:95
Alignment explanation
Indices: 107445917--107446285 Score: 391
Period size: 96 Copynumber: 3.9 Consensus size: 95
107445907 TGATATGTGT
* * ** *
107445917 GCTAGTGTAAGACCATGTTTGGAACAAGGCATCGGCCACATTATGAGAGCCAGCGTAAGACCATG
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCATAACATGAGAGCCAGTGTAAGACCATG
* * *
107445982 TTTGGAACATGGCATCGACCAC-ATTATGAGA
66 TCTGGGACATGGCATC-ACCACGA-AATGAGA
* * * * *** *
107446013 GCCAGTATAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCCAGAGTAAGACCATG
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCATAACATGAGAGCCAGTGTAAGACCATG
*
107446078 TCTGGGACATGGCATCAGCATCGAAATGAGA
66 TCTGGGACATGGCATCACCA-CGAAATGAGA
* * * * *
107446109 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTAACATGTGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCATAACATGAGAGCCAGTGTAAGACCATG
* * * *
107446174 TCTAGGACATGGCATCAGCCTCGACATGTGA
66 TCTGGGACATGGCATCA-CCACGAAATGAGA
* * * * *
107446205 GCTAGTGTAAGACCATGTTTGGGATATGGCATTGGCC-TCGACATGTGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCAT-AACATGAGAGCCAGTGTAAGACCAT
*
107446269 GTCTTGGACATGGCATC
65 GTCTGGGACATGGCATC
107446286 CGCAGTTTAC
Statistics
Matches: 233, Mismatches: 36, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
95 4 0.02
96 227 0.97
97 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (95 bp):
GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCATAACATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCACCACGAAATGAGA
Found at i:107446184 original size:144 final size:144
Alignment explanation
Indices: 107445959--107446285 Score: 363
Period size: 144 Copynumber: 2.3 Consensus size: 144
107445949 CGGCCACATT
* * * **
107445959 ATGAGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCGACCACATTATGAGAGCCAGTATAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCCAGTATAAG
* **
107446024 ACCATGTTTGGAACATGGCATC-GACAAT-GTTATGAGAGCCAGAGTAAGACCATGTCTGGGACA
66 ACCATGTTAGGAACATGGCATCAG-C-ATCGACATGAGAGCCAGAGTAAGACCATGTCTGGGACA
107446087 TGGCATCAGCATCGAA
129 TGGCATCAGCATCGAA
* * ** * * *
107446103 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTAACATGTGAGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCCAGTATAAG
* * * * * *
107446168 ACCATGTCTAGG-ACATGGCATCAGCCTCGACATGTGAGCTAGTGTAAGACCATGTTTGGGATAT
66 ACCATGT-TAGGAACATGGCATCAGCATCGACATGAGAGCCAGAGTAAGACCATGTCTGGGACAT
** * *
107446232 GGCATTGGCCTCGAC
130 GGCATCAGCATCGAA
* *
107446247 ATGTGAGCCAGTGTAAGACCATGTCTTGGACATGGCATC
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
107446286 CGCAGTTTAC
Statistics
Matches: 152, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
143 1 0.01
144 147 0.97
145 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (144 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCCAGTATAAG
ACCATGTTAGGAACATGGCATCAGCATCGACATGAGAGCCAGAGTAAGACCATGTCTGGGACATG
GCATCAGCATCGAA
Found at i:107447499 original size:21 final size:21
Alignment explanation
Indices: 107447473--107447553 Score: 119
Period size: 21 Copynumber: 3.9 Consensus size: 21
107447463 TGTGTAAGCC
107447473 ACACGGGCGTGTCGCCCTTCT
1 ACACGGGCGTGTCGCCCTTCT
*
107447494 ACACGGTCGTGTCGCCCTTCT
1 ACACGGGCGTGTCGCCCTTCT
* *
107447515 ACACGGTCGTGTCGCCCTTCC
1 ACACGGGCGTGTCGCCCTTCT
*
107447536 ACACGGGCATGT-GCCCTT
1 ACACGGGCGTGTCGCCCTT
107447554 ATCTGCTTGA
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
20 6 0.11
21 50 0.89
ACGTcount: A:0.11, C:0.38, G:0.26, T:0.25
Consensus pattern (21 bp):
ACACGGGCGTGTCGCCCTTCT
Found at i:107457940 original size:14 final size:14
Alignment explanation
Indices: 107457904--107457947 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
107457894 AATATATATA
107457904 TATATGTTATAATAAT
1 TATATG-TAT-ATAAT
* *
107457920 AAAATGTATATAAT
1 TATATGTATATAAT
107457934 TATATGTATATAAT
1 TATATGTATATAAT
107457948 ATAAGTTATG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 17 0.71
15 3 0.12
16 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
TATATGTATATAAT
Found at i:107459299 original size:13 final size:13
Alignment explanation
Indices: 107459281--107459305 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107459271 AGAAAAAAAA
107459281 ATATGTGTATTTG
1 ATATGTGTATTTG
107459294 ATATGTGTATTT
1 ATATGTGTATTT
107459306 ATTTGTGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (13 bp):
ATATGTGTATTTG
Found at i:107465754 original size:20 final size:21
Alignment explanation
Indices: 107465720--107465773 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
107465710 TGATGATATT
*
107465720 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
107465741 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
107465761 TTTTATTATTTTA
1 TTATATTATTTTA
107465774 TTATATTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:107467991 original size:46 final size:46
Alignment explanation
Indices: 107467939--107468213 Score: 306
Period size: 46 Copynumber: 6.0 Consensus size: 46
107467929 TGCTCTCTGA
** *
107467939 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGC
1 TATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGC
** * * *
107467985 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACCTGA
1 TATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGC
* **
107468031 TATGAAATCAATAAGACCATGGTTGAAAGATACCATGATAACATGAC
1 TATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG-C
* * *
107468078 -A-GAAAATGAATAAGACCATGGTTGGAAGATACCATGGCAACGTGA
1 TATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGC
*
107468123 TATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 TATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG-C
* * * * *
107468170 -A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 TATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
107468214 TCAAAGATAA
Statistics
Matches: 197, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
45 2 0.01
46 194 0.98
47 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
TATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGC
Found at i:107468194 original size:138 final size:138
Alignment explanation
Indices: 107467950--107468198 Score: 374
Period size: 138 Copynumber: 1.8 Consensus size: 138
107467940 ATGAAATGTG
* * ***
107467950 TAAGACCATGGTTGAAAGATACCATGGCAACTTGCTATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGA
* * *
107468015 TACCATGGAAACCTGATATGAAATCAATAAGACCATGGTTGAAAGATACCATGATAACATGACAG
66 TACCATGGAAACATGACATGAAATCAATAAGACCATAGTTGAAAGATACCATGATAACATGACAG
107468080 AAAATGAA
131 AAAATGAA
*
107468088 TAAGACCATGGTTGGAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGA
* * *
107468153 TACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
66 TACCATGGAAACATGACATG-AAATCAATAAGACCATAGTTGAAAGA
107468199 CACTATGGCA
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
137 1 0.01
138 97 0.99
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.21
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGA
TACCATGGAAACATGACATGAAATCAATAAGACCATAGTTGAAAGATACCATGATAACATGACAG
AAAATGAA
Found at i:107468207 original size:92 final size:92
Alignment explanation
Indices: 107467935--107468208 Score: 381
Period size: 92 Copynumber: 3.0 Consensus size: 92
107467925 AGTGTGCTCT
** * *
107467935 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTG-CTATG-AAATGTGTA
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC-A-GAAAATGAGTA
*
107467998 AGACCATGGTTGAAAGATACCATGGAAAC
64 AGACCATGGTTGAAAGATACCATGGCAAC
* ** *
107468027 CTGATATGAAATCAATAAGACCATGGTTGAAAGATACCATGATAACATGACAGAAAATGAATAAG
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAG
*
107468092 ACCATGGTTGGAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
* *
107468119 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAG
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAG
* * *
107468184 ACCATAGTTGAAAGACACTATGGCA
66 ACCATGGTTGAAAGATACCATGGCA
107468209 TCATGTCAAA
Statistics
Matches: 160, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
91 1 0.01
92 158 0.99
93 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (92 bp):
CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAG
ACCATGGTTGAAAGATACCATGGCAAC
Found at i:107469702 original size:56 final size:56
Alignment explanation
Indices: 107469635--107469748 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
107469625 TGAGTAAAAA
107469635 TGTTAGTTATGATGAAGTAGAACTCGTAAAAGTACAGATAAATGTTTTATAGTACT
1 TGTTAGTTATGATGAAGTAGAACTCGTAAAAGTACAGATAAATGTTTTATAGTACT
*
107469691 TGTTAGTTATGATGAAGTAGAACTCGTAAAAGTACGGATAAATGTTTTATAGTACT
1 TGTTAGTTATGATGAAGTAGAACTCGTAAAAGTACAGATAAATGTTTTATAGTACT
107469747 TG
1 TG
107469749 AGAATGATAA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (56 bp):
TGTTAGTTATGATGAAGTAGAACTCGTAAAAGTACAGATAAATGTTTTATAGTACT
Found at i:107471144 original size:20 final size:21
Alignment explanation
Indices: 107471110--107471163 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
107471100 TGATGATATT
*
107471110 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
107471131 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
107471151 TTTTATTATTTTA
1 TTATATTATTTTA
107471164 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:107471177 original size:19 final size:20
Alignment explanation
Indices: 107471149--107471191 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
107471139 TTTAATGAGA
*
107471149 TATTTTATTA-TTTTATTAT
1 TATTTCATTATTTTTATTAT
*
107471168 TATTTCATTATTTTTATTTT
1 TATTTCATTATTTTTATTAT
107471188 TATT
1 TATT
107471192 AATTATTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (20 bp):
TATTTCATTATTTTTATTAT
Found at i:107471178 original size:14 final size:12
Alignment explanation
Indices: 107471153--107471199 Score: 51
Period size: 14 Copynumber: 3.8 Consensus size: 12
107471143 ATGAGATATT
107471153 TTATTA-TTTTA
1 TTATTATTTTTA
107471164 TTATTATTTCATTA
1 TTATTATTT--TTA
*
107471178 TTTTTATTTTTA
1 TTATTATTTTTA
107471190 TTAATTATTT
1 TT-ATTATTT
107471200 AGTATAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
11 6 0.20
12 7 0.23
13 6 0.20
14 11 0.37
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (12 bp):
TTATTATTTTTA
Found at i:107471196 original size:19 final size:20
Alignment explanation
Indices: 107471149--107471199 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
107471139 TTTAATGAGA
*
107471149 TATTTTATTA-TTTTATTAT
1 TATTTAATTATTTTTATTAT
* *
107471168 TATTTCATTATTTTTATTTT
1 TATTTAATTATTTTTATTAT
107471188 TA-TTAATTATTT
1 TATTTAATTATTT
107471200 AGTATAAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 18 0.64
20 10 0.36
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TATTTAATTATTTTTATTAT
Found at i:107473332 original size:46 final size:46
Alignment explanation
Indices: 107473280--107473511 Score: 313
Period size: 46 Copynumber: 5.0 Consensus size: 46
107473270 GTGTGCTCTC
** * *
107473280 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCCTGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
107473326 TGATATGAAATCAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
107473372 TGACA-GAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
107473418 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* ** * * * * *
107473464 TGACAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
107473510 TG
1 TG
107473512 TCAAAGATAA
Statistics
Matches: 166, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 164 0.99
47 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:107473444 original size:92 final size:92
Alignment explanation
Indices: 107473294--107473511 Score: 346
Period size: 92 Copynumber: 2.4 Consensus size: 92
107473284 ATGAAATGTG
* * *
107473294 TAAGACCATGGTTGAAAGATACCCTGGCAACGTGATATGAAATCAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATCAACAAGACCATGGTTGAAAGA
*
107473359 TACCATGGCAACATGACAGAAAATGAA
66 TACCATGGCAACATGACAAAAAATGAA
*
107473386 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAACAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATCAACAAGACCATGGTTGAAAGA
*
107473451 TACCATGGCAACATGACAAAAAATGAG
66 TACCATGGCAACATGACAAAAAATGAA
* * * *
107473478 TAAGACCATAGTTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
107473512 TCAAAGATAA
Statistics
Matches: 116, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 116 1.00
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.20
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATCAACAAGACCATGGTTGAAAGA
TACCATGGCAACATGACAAAAAATGAA
Found at i:107474260 original size:29 final size:29
Alignment explanation
Indices: 107474228--107474294 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
107474218 AAATGGAAAT
* *
107474228 CTTTGTGGCCATCTCTATTATCAAG-AAGC
1 CTTTGTGGCAATCCCTATTAT-AAGAAAGC
* *
107474257 CTTTGTGGCAATCCCTGTTATAGGAAAGC
1 CTTTGTGGCAATCCCTATTATAAGAAAGC
107474286 CTTTGTGGC
1 CTTTGTGGC
107474295 GATTTATGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 2 0.06
29 31 0.94
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (29 bp):
CTTTGTGGCAATCCCTATTATAAGAAAGC
Found at i:107474304 original size:29 final size:29
Alignment explanation
Indices: 107474253--107474310 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
107474243 TATTATCAAG
* *
107474253 AAGCCTTTGTGGCAATCCCTGTTATAGGA
1 AAGCCTTTGTGGCAATCCATGTTAAAGGA
* **
107474282 AAGCCTTTGTGGCGATTTATGTTAAAGGA
1 AAGCCTTTGTGGCAATCCATGTTAAAGGA
107474311 TGTGTTTTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (29 bp):
AAGCCTTTGTGGCAATCCATGTTAAAGGA
Found at i:107474353 original size:29 final size:29
Alignment explanation
Indices: 107474319--107474386 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
107474309 GATGTGTTTT
*
107474319 TGGCTATCTCAGTTAAATGAATATCTTTG
1 TGGCTATCTCAGTTAAATGAATACCTTTG
* *
107474348 TGGCTATCTAAGTTAAATGAATGCCTTTG
1 TGGCTATCTCAGTTAAATGAATACCTTTG
107474377 TGGCTATCTC
1 TGGCTATCTC
107474387 TATTGCCATC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (29 bp):
TGGCTATCTCAGTTAAATGAATACCTTTG
Found at i:107474442 original size:28 final size:29
Alignment explanation
Indices: 107474396--107474452 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
107474386 CTATTGCCAT
* *
107474396 CTTTATTAAAGGAATGCCTT-GTGGCAAA
1 CTTTATTAAAAGAACGCCTTCGTGGCAAA
*
107474424 CTTTGTTAAAAGAACGCCTTCGTGGCAAA
1 CTTTATTAAAAGAACGCCTTCGTGGCAAA
107474453 ATCTGAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30
Consensus pattern (29 bp):
CTTTATTAAAAGAACGCCTTCGTGGCAAA
Found at i:107476367 original size:30 final size:30
Alignment explanation
Indices: 107476333--107476397 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
107476323 ACTTATTTTA
*
107476333 TTGTTAATTTTGTTATTATTTTTA-AGGCAT
1 TTGTTAATTTTGTTATTA-TTTTAGAGACAT
*
107476363 TTGTTAATTTTTTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAGAGACAT
107476393 TTGTT
1 TTGTT
107476398 TGTTAAGTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 5 0.16
30 27 0.84
ACGTcount: A:0.23, C:0.03, G:0.12, T:0.62
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAGACAT
Found at i:107478558 original size:22 final size:22
Alignment explanation
Indices: 107478533--107478582 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
107478523 TTTTATAAAG
* * *
107478533 TTATTAAGATTAAATTATATTT
1 TTATTAAGATAAAAATATAATT
* *
107478555 TTATGATGATAAAAATATAATT
1 TTATTAAGATAAAAATATAATT
107478577 TTATTA
1 TTATTA
107478583 TTTTAATATT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (22 bp):
TTATTAAGATAAAAATATAATT
Found at i:107478649 original size:29 final size:30
Alignment explanation
Indices: 107478592--107478662 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
107478582 ATTTTAATAT
107478592 TTATATTTTTATAATTTTTAGAAAATTAAA
1 TTATATTTTTATAATTTTTAGAAAATTAAA
** **
107478622 TTAT-TTTTTATTGTTTTTAGAATGTTAAA
1 TTATATTTTTATAATTTTTAGAAAATTAAA
* *
107478651 ATATAATTTTAT
1 TTATATTTTTAT
107478663 TATTATTAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 24 0.71
30 10 0.29
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.58
Consensus pattern (30 bp):
TTATATTTTTATAATTTTTAGAAAATTAAA
Found at i:107480840 original size:30 final size:30
Alignment explanation
Indices: 107480805--107480871 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
107480795 TTTGACTTCA
*
107480805 AATTAATTTTAAATAATAGATTTTTTCCCC
1 AATTAATTTTAAATAATAGATTTTTCCCCC
107480835 AATTAATTTTAAATAATAGATTTTTCCCCC
1 AATTAATTTTAAATAATAGATTTTTCCCCC
107480865 AATTAAT
1 AATTAAT
107480872 AAGTTGGTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.39, C:0.13, G:0.03, T:0.45
Consensus pattern (30 bp):
AATTAATTTTAAATAATAGATTTTTCCCCC
Found at i:107481650 original size:16 final size:16
Alignment explanation
Indices: 107481629--107481683 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
107481619 ATAAAGATAG
107481629 AAAAATAAAAATATTC
1 AAAAATAAAAATATTC
* ** **
107481645 AAAAATCTAAAAGGTAG
1 AAAAAT-AAAAATATTC
107481662 AAAAATAAAAATATTC
1 AAAAATAAAAATATTC
107481678 AAAAAT
1 AAAAAT
107481684 CTAAAAGGTC
Statistics
Matches: 28, Mismatches: 10, Indels: 2
0.70 0.25 0.05
Matches are distributed among these distances:
16 17 0.61
17 11 0.39
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.22
Consensus pattern (16 bp):
AAAAATAAAAATATTC
Found at i:107481656 original size:17 final size:17
Alignment explanation
Indices: 107481636--107481689 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
107481626 TAGAAAAATA
107481636 AAAATATTCAAAAATCT
1 AAAATATTCAAAAATCT
** ** *
107481653 AAAAGGTAGAAAAAT-A
1 AAAATATTCAAAAATCT
107481669 AAAATATTCAAAAATCT
1 AAAATATTCAAAAATCT
107481686 AAAA
1 AAAA
107481690 GGTCTTTATA
Statistics
Matches: 26, Mismatches: 10, Indels: 2
0.68 0.26 0.05
Matches are distributed among these distances:
16 11 0.42
17 15 0.58
ACGTcount: A:0.65, C:0.07, G:0.06, T:0.22
Consensus pattern (17 bp):
AAAATATTCAAAAATCT
Found at i:107481666 original size:33 final size:33
Alignment explanation
Indices: 107481621--107481692 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
107481611 AATTCAAAAT
*
107481621 AAAGATAGAAAAATAAAAATATTCAAAAATCTA
1 AAAGGTAGAAAAATAAAAATATTCAAAAATCTA
107481654 AAAGGTAGAAAAATAAAAATATTCAAAAATCTA
1 AAAGGTAGAAAAATAAAAATATTCAAAAATCTA
107481687 AAAGGT
1 AAAGGT
107481693 CTTTATACGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.64, C:0.06, G:0.10, T:0.21
Consensus pattern (33 bp):
AAAGGTAGAAAAATAAAAATATTCAAAAATCTA
Found at i:107483311 original size:124 final size:124
Alignment explanation
Indices: 107483091--107483321 Score: 356
Period size: 124 Copynumber: 1.9 Consensus size: 124
107483081 GATGGAAACT
* *
107483091 TAAGATTAAAGTGCTAGGTAGCTGTAATAATAAGGGAAGGATGAGTAATATACTTTTAATGAACT
1 TAAGATTAAAGTGCTAGATAGCTGTAATAATAAGGGAAGGATGAGTAATATACTCTTAATGAACT
* *
107483156 CATAACATAAAAATTTTAGAGTGTTATAATTACGAGAACACTATAAAATAATTTCATCC
66 CATAACATAAAAATTTTAGAGTATTATAATTACAAGAACACTATAAAATAATTTCATCC
* * * * *
107483215 TAAGATTAAAGTGTTAGATA-CATGTAATGATAAGGGAATGATGAGTAATGTACTCTTAATGAGC
1 TAAGATTAAAGTGCTAGATAGC-TGTAATAATAAGGGAAGGATGAGTAATATACTCTTAATGAAC
*
107483279 TCATAACATACAAATTTTAGAGTATTATAATTACAAGAACACT
65 TCATAACATAAAAATTTTAGAGTATTATAATTACAAGAACACT
107483322 CTTAATGGAA
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
123 1 0.01
124 95 0.99
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (124 bp):
TAAGATTAAAGTGCTAGATAGCTGTAATAATAAGGGAAGGATGAGTAATATACTCTTAATGAACT
CATAACATAAAAATTTTAGAGTATTATAATTACAAGAACACTATAAAATAATTTCATCC
Found at i:107484628 original size:9 final size:9
Alignment explanation
Indices: 107484614--107484657 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
107484604 TTCACATCCT
107484614 TCTCTCAAC
1 TCTCTCAAC
107484623 TCTCTCAAAC
1 TCTCTC-AAC
* * *
107484633 CCTCTTAAG
1 TCTCTCAAC
107484642 TCTCTCAAC
1 TCTCTCAAC
107484651 TCTCTCA
1 TCTCTCA
107484658 TTTTGATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.23, C:0.41, G:0.02, T:0.34
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:107488902 original size:46 final size:45
Alignment explanation
Indices: 107488835--107489054 Score: 218
Period size: 47 Copynumber: 4.8 Consensus size: 45
107488825 AACCCGCCCC
* *
107488835 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-C-GTTCGCATCT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCAGTT-ACAT-T
107488880 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATT
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CC-AGTTACATT
* *
107488929 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CC-AGTTACATT
* * * *
107488976 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CA-TTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCAGTT-ACAT--T
107489021 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
107489055 TGCTCAACCA
Statistics
Matches: 157, Mismatches: 8, Indels: 18
0.86 0.04 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
44 1 0.01
45 2 0.01
46 62 0.39
47 76 0.48
48 2 0.01
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCAGTTACATT
Found at i:107488954 original size:47 final size:47
Alignment explanation
Indices: 107488886--107489008 Score: 246
Period size: 47 Copynumber: 2.6 Consensus size: 47
107488876 ATCTATAAGT
107488886 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
107488933 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
107488980 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
107489009 CATTCGCATC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 76 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:107491719 original size:6 final size:6
Alignment explanation
Indices: 107491708--107491736 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
107491698 AAAGAAACGC
107491708 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
107491737 CAAGTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:107526212 original size:40 final size:40
Alignment explanation
Indices: 107526128--107526311 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
107526118 TTGAATGCTG
* * * *
107526128 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
107526167 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
107526208 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
107526248 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
107526288 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
107526312 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:107526265 original size:80 final size:81
Alignment explanation
Indices: 107526128--107526308 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
107526118 TTGAATGCTG
* * *
107526128 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
107526192 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
107526208 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
107526269 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
107526288 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
107526309 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:107526332 original size:39 final size:38
Alignment explanation
Indices: 107526209--107526358 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
107526199 GTTATTAATT
* ** * *
107526209 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
107526249 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
107526288 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
107526328 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
107526359 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:107541948 original size:46 final size:47
Alignment explanation
Indices: 107541897--107542027 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 47
107541887 ATGGTTGAGC
107541897 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAG
* * *
107541944 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G
107541989 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
107542028 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 29 0.41
48 2 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (47 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTAG
Found at i:107542013 original size:47 final size:46
Alignment explanation
Indices: 107541895--107542020 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 46
107541885 GGATGGTTGA
* *
107541895 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GGATGCGAAT
*
107541943 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGAA-T
107541986 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
107542021 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 30 0.43
48 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGAAT
Found at i:107549398 original size:46 final size:46
Alignment explanation
Indices: 107549348--107549523 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
107549338 TGGTTGAGCA
107549348 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
107549394 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
107549439 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
107549487 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
107549524 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:107549504 original size:93 final size:93
Alignment explanation
Indices: 107549345--107549516 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
107549335 GGATGGTTGA
* *
107549345 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
107549410 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
107549438 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
107549503 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
107549517 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:107554871 original size:17 final size:18
Alignment explanation
Indices: 107554838--107554875 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
107554828 GATGGGCCGA
*
107554838 AATGGGCCATGTGGGCCC
1 AATGGGCCATATGGGCCC
107554856 AATGGGCC-TATGGGCCC
1 AATGGGCCATATGGGCCC
107554873 AAT
1 AAT
107554876 TGGATAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.21, C:0.26, G:0.34, T:0.18
Consensus pattern (18 bp):
AATGGGCCATATGGGCCC
Found at i:107555068 original size:27 final size:27
Alignment explanation
Indices: 107555047--107555198 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
107555037 TTAGTTTACC
*
107555047 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
107555074 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
107555101 AAATTACTAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
107555128 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
107555155 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
*
107555182 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
107555199 TCGACCTGCA
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:107555137 original size:54 final size:54
Alignment explanation
Indices: 107555055--107555254 Score: 240
Period size: 54 Copynumber: 3.7 Consensus size: 54
107555045 CCAAATCACC
107555055 AAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACT
1 AAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACT
* * * *
107555109 AAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACC
1 AAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACT
* * * * *** *
107555163 AAAATACCCCTAATTTGTGAAATTACTAAAATACCCTCGACCTGCAAAATTACT
1 AAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACT
* * * *
107555217 GAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTT
1 AAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTT
107555255 CATTTATAGA
Statistics
Matches: 121, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
53 4 0.03
54 117 0.97
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACT
Found at i:107555180 original size:81 final size:81
Alignment explanation
Indices: 107555037--107555199 Score: 254
Period size: 81 Copynumber: 2.0 Consensus size: 81
107555027 TTAGAAAACT
* * **
107555037 TTAGTTTACCAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAA
1 TTAGTTTACAAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAA
107555102 AATTACTAAAATACCC
66 AATTACTAAAATACCC
* * * *
107555118 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTGA
1 TTAGTTTACAAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAA
107555183 AATTACTAAAATACCC
66 AATTACTAAAATACCC
107555199 T
1 T
107555200 CGACCTGCAA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (81 bp):
TTAGTTTACAAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAA
AATTACTAAAATACCC
Found at i:107555212 original size:81 final size:81
Alignment explanation
Indices: 107555047--107555252 Score: 236
Period size: 81 Copynumber: 2.5 Consensus size: 81
107555037 TTAGTTTACC
* * * **
107555047 AAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
* ** *
107555112 ATACCCTTAGTTTATA
66 ATACCCTGAGCCTACA
*
107555128 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
*
107555193 ATACCCTCGA-CCTGCA
66 ATACCCT-GAGCCTACA
** ** *
107555209 AAATTACTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCC
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCC
107555253 TTCATTTATA
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 4 0.04
81 102 0.95
82 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
ATACCCTGAGCCTACA
Found at i:107555286 original size:27 final size:27
Alignment explanation
Indices: 107555072--107555287 Score: 109
Period size: 27 Copynumber: 8.0 Consensus size: 27
107555062 CCCTAGTTTG
* * * *
107555072 TAAAATTACCAAAATACCCTTGGTTTG
1 TAAAATTACCAAAGTACCCTCGATTTA
* * *
107555099 TAAAATTACTAAAATACCCT-TAGTTTA
1 TAAAATTACCAAAGTACCCTCGA-TTTA
* * *
107555126 TAAAATTACCAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAGTACCCTC-GATTTA
* * *
107555153 TAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCAAAGTACCCTC-GATTTA
* * * ** *
107555180 TGAAATTACTAAAATACCCTCGACCTG
1 TAAAATTACCAAAGTACCCTCGATTTA
* * * *
107555207 CAAAATTACTGAAA-TACCCTCGACTTG
1 TAAAATTAC-CAAAGTACCCTCGATTTA
107555234 TAAAATTACCAAAGTACCCTTC-ATTTA
1 TAAAATTACCAAAGTACCC-TCGATTTA
* ***
107555261 TAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAAGTACCCTCGATTTA
107555288 CCAAGTTATA
Statistics
Matches: 154, Mismatches: 27, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.03
27 143 0.93
28 6 0.04
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (27 bp):
TAAAATTACCAAAGTACCCTCGATTTA
Found at i:107555328 original size:27 final size:27
Alignment explanation
Indices: 107555298--107555405 Score: 137
Period size: 27 Copynumber: 4.0 Consensus size: 27
107555288 CCAAGTTATA
* *
107555298 GAAATACCCTTGTAAGGTA-AATTTACC
1 GAAATACCCCTGTAGGGTAGAA-TTACC
107555325 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
107555352 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * ** *
107555379 GAGATACCCTTGCGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
107555406 ATTTTACCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 71 0.97
28 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:107555845 original size:22 final size:21
Alignment explanation
Indices: 107555796--107555857 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
107555786 AATTATTTTA
* *
107555796 ATTATGGCTTTGCGCCAACCT
1 ATTATGGCTCTGTGCCAACCT
*
107555817 ACATATGGCTCTGTGCCAACCT
1 A-TTATGGCTCTGTGCCAACCT
*
107555839 GATTATGGCTGTGTGCCAA
1 -ATTATGGCTCTGTGCCAA
107555858 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.31
Consensus pattern (21 bp):
ATTATGGCTCTGTGCCAACCT
Found at i:107556014 original size:27 final size:27
Alignment explanation
Indices: 107555984--107556084 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
107555974 ATTCTGTTAA
*
107555984 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTTTGCCACAATATCTATTTCTG
*
107556011 GTGGCTATGCCACAAATATCTA-TTCTG
1 GTGGCTTTGCCAC-AATATCTATTTCTG
* * * *
107556038 GAGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTATTTCTG
* *
107556065 GTGACTTTGTCACAATATCT
1 GTGGCTTTGCCACAATATCT
107556085 GTTCTAGCAG
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 48 0.77
28 7 0.11
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.37
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTATTTCTG
Found at i:107556049 original size:54 final size:53
Alignment explanation
Indices: 107555986--107556089 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 53
107555976 TCTGTTAAGT
* * * *
107555986 GGCTTTGCCACATTATCTATTTCTGGTGGCTATGCCACAAATATCTATTCTGGA
1 GGCTCTGCCACAATATCTATATCTGGTGACTATGCCAC-AATATCTATTCTGGA
* * * *
107556040 GGCTCTGCCACAATATCTGTATCTGGTGACTTTGTCACAATATCTGTTCT
1 GGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTATTCT
107556090 AGCAGCCATG
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 11 0.26
54 31 0.74
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (53 bp):
GGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTATTCTGGA
Done.