Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 322 of 362
Found at i:107556218 original size:6 final size:6
Alignment explanation
Indices: 107556209--107556293 Score: 66
Period size: 6 Copynumber: 13.8 Consensus size: 6
107556199 TTGCATTCAC
* * *
107556209 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTAT- ATCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
107556259 ATTTTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
107556294 AGTTCTAATA
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
5 4 0.07
6 50 0.82
7 4 0.07
8 3 0.05
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:107556240 original size:25 final size:25
Alignment explanation
Indices: 107556212--107556276 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
107556202 CATTCACATT
*
107556212 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
* * *
107556237 CTGATTCTGATTATATCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
*
107556262 TTGATTCTGATTCTG
1 CTGATTCTGATTCTG
107556277 ATTCTCATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:107562131 original size:15 final size:15
Alignment explanation
Indices: 107562111--107562166 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
107562101 GTATCTTGGG
107562111 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
107562126 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
107562141 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
107562156 TTTCTTTATTC
1 TTTCTTTATTC
107562167 AGTTTTCTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
14 4 0.11
15 27 0.77
16 4 0.11
ACGTcount: A:0.11, C:0.14, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:107564437 original size:49 final size:48
Alignment explanation
Indices: 107564307--107564450 Score: 182
Period size: 49 Copynumber: 2.9 Consensus size: 48
107564297 TCTATTGTGA
107564307 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CATGAAAACTGC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA-G---ACTGC
* * * * * *
107564358 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTG-C
107564407 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
107564451 TAGCTTCGGC
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
48 4 0.05
49 39 0.49
51 35 0.44
52 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGC
Found at i:107568775 original size:75 final size:75
Alignment explanation
Indices: 107568614--107568776 Score: 168
Period size: 75 Copynumber: 2.2 Consensus size: 75
107568604 AATCGTCAGC
* *
107568614 TAATTTGACTAGCACTAGGGGAAAATATTGTTGGTTTATCCAACTAAAGCTGGGCTCACAACTAT
1 TAATCTGACTAGCACTAGGGGAAAATATTGTTGGTTTATCCAACTAAAGCTGGGCTCACAACGAT
**
107568679 TATCATCGGT
66 TATCATCAAT
** * * * * * *
107568689 TAATCCAACTAGCAC-GGGGTGCAAATGTTGTTGGTTTATCCAACTAGAGTTGGGCTCACATTCG
1 TAATCTGACTAGCACTAGGG-GAAAATATTGTTGGTTTATCCAACTAAAGCTGGGCTCACA-ACG
**
107568753 A-TATTGTCAAT
64 ATTATCATCAAT
107568764 TAATCTGACTAGC
1 TAATCTGACTAGC
107568777 GCTGGGAGAA
Statistics
Matches: 70, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
74 3 0.04
75 65 0.93
76 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (75 bp):
TAATCTGACTAGCACTAGGGGAAAATATTGTTGGTTTATCCAACTAAAGCTGGGCTCACAACGAT
TATCATCAAT
Found at i:107569055 original size:17 final size:18
Alignment explanation
Indices: 107569033--107569066 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
107569023 ACTCAATGTT
107569033 GGTGACATTTT-TTTTTG
1 GGTGACATTTTCTTTTTG
107569050 GGTGACATTTTCTTTTT
1 GGTGACATTTTCTTTTT
107569067 TTGTGTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.12, C:0.09, G:0.21, T:0.59
Consensus pattern (18 bp):
GGTGACATTTTCTTTTTG
Found at i:107573980 original size:14 final size:14
Alignment explanation
Indices: 107573946--107573981 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
107573936 CGAGTAATTC
107573946 CTTCCTCCCTCTTT
1 CTTCCTCCCTCTTT
* *
107573960 GTGCCTCCCTCTTT
1 CTTCCTCCCTCTTT
107573974 CTTCCTCC
1 CTTCCTCC
107573982 TCTAGGGTGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.06, T:0.44
Consensus pattern (14 bp):
CTTCCTCCCTCTTT
Found at i:107580780 original size:45 final size:45
Alignment explanation
Indices: 107580716--107580803 Score: 176
Period size: 45 Copynumber: 2.0 Consensus size: 45
107580706 TTATGGAATG
107580716 TTTGAACCTGTAGCCAAAGCGGTAACCCATGGTGAGGGCACCTCT
1 TTTGAACCTGTAGCCAAAGCGGTAACCCATGGTGAGGGCACCTCT
107580761 TTTGAACCTGTAGCCAAAGCGGTAACCCATGGTGAGGGCACCT
1 TTTGAACCTGTAGCCAAAGCGGTAACCCATGGTGAGGGCACCT
107580804 TCTCAAAAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (45 bp):
TTTGAACCTGTAGCCAAAGCGGTAACCCATGGTGAGGGCACCTCT
Found at i:107585315 original size:27 final size:28
Alignment explanation
Indices: 107585231--107585328 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
107585221 CATGAGATTG
* * *
107585231 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
107585260 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
107585288 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
107585315 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
107585329 GACTTAATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.38
28 21 0.33
29 19 0.30
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:107585342 original size:29 final size:27
Alignment explanation
Indices: 107585259--107585343 Score: 98
Period size: 27 Copynumber: 3.0 Consensus size: 27
107585249 TAAATTGTTC
* *
107585259 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
107585287 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
107585314 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
107585343 A
1 A
107585344 TTTTGAATCA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.45
28 22 0.43
29 6 0.12
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:107597411 original size:51 final size:49
Alignment explanation
Indices: 107597252--107597790 Score: 823
Period size: 47 Copynumber: 11.1 Consensus size: 49
107597242 GAAATGATAG
*
107597252 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
107597299 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
107597346 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
107597397 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTCTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
107597448 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
107597497 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
107597544 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
107597595 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
*
107597646 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
107597693 TAGGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
107597740 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
107597787 TAAG
1 TAAG
107597791 TCCTGAAGGG
Statistics
Matches: 465, Mismatches: 15, Indels: 24
0.92 0.03 0.05
Matches are distributed among these distances:
45 1 0.00
47 214 0.46
48 1 0.00
49 54 0.12
51 195 0.42
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:107597588 original size:198 final size:196
Alignment explanation
Indices: 107597252--107597779 Score: 939
Period size: 198 Copynumber: 2.7 Consensus size: 196
107597242 GAAATGATAG
107597252 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
107597317 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
107597382 TATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTCTATATATATGTG
131 TATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTG
107597447 A
196 A
* *
107597448 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCG
107597513 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
64 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
107597578 TGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATG
129 TGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATG
107597643 TGA
194 TGA
107597646 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
* * * * * * * *
107597711 GTGATGAATGTGAAAGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
107597776 TATA
131 TATA
107597780 AATGTGATAA
Statistics
Matches: 317, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
196 124 0.39
198 193 0.61
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (196 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTG
A
Found at i:107597951 original size:37 final size:37
Alignment explanation
Indices: 107597909--107597987 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
107597899 CCGAGCTCTA
* * *
107597909 AAGACCCGATGA-TTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTT-CGTGTGGAGATTATGTCCGGGT
*
107597946 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
107597983 AAGAC
1 AAGAC
107597988 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
Found at i:107615033 original size:12 final size:12
Alignment explanation
Indices: 107615016--107615040 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
107615006 AAATTAAACT
107615016 TATTTAATCAAA
1 TATTTAATCAAA
107615028 TATTTAATCAAA
1 TATTTAATCAAA
107615040 T
1 T
107615041 TCATCCAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TATTTAATCAAA
Found at i:107619642 original size:23 final size:20
Alignment explanation
Indices: 107619600--107619642 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
107619590 AGTTTAGTAT
107619600 ACATACTAGTACAACTTGTA
1 ACATACTAGTACAACTTGTA
107619620 ACATACTCAAGTACATACTTGTA
1 ACATACT--AGTACA-ACTTGTA
107619643 CAATTGTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
22 6 0.30
23 7 0.35
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (20 bp):
ACATACTAGTACAACTTGTA
Found at i:107622217 original size:14 final size:14
Alignment explanation
Indices: 107622198--107622224 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
107622188 TACTTGTTCT
107622198 TGTTCTTAATTATG
1 TGTTCTTAATTATG
107622212 TGTTCTTAATTAT
1 TGTTCTTAATTAT
107622225 TGCTTTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:107623598 original size:25 final size:25
Alignment explanation
Indices: 107623570--107623618 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
107623560 CCAGAGGACC
* *
107623570 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
107623595 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
107623619 AATAGTAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:107625730 original size:80 final size:81
Alignment explanation
Indices: 107625646--107625877 Score: 222
Period size: 80 Copynumber: 2.9 Consensus size: 81
107625636 GTGTGATCAG
* * ** ** ** *
107625646 GGGTATCGAAGTGCAAATAGGGGCACAAATGTGCATTTAGGGGTACCAAAGTACAATTAGGGGAA
1 GGGTACCGAAGTACAAATAGGGGCACTGATGTGCAAATAGGGGTACCAAAGTACAAACAGGGCAA
*
107625711 CTGATGTGCAAA-AAA
66 CTAATGTGCAAACAAA
* * * * *
107625726 GGGTAGC-AGAGTACAACTAGGGGCATTGATGTGCAAATAGGGGTACCGAAGTACAAACAGGGCC
1 GGGTACCGA-AGTACAAATAGGGGCACTGATGTGCAAATAGGGGTACCAAAGTACAAACAGGGCA
107625790 ACTAATGTGCAAACAAA
65 ACTAATGTGCAAACAAA
* ** * *
107625807 -GGTACCGAAGTAC-AATCAGGGGCACTGATGTGCAAACAGGGGTACTGAAGTAAAAATAGGGGC
1 GGGTACCGAAGTACAAAT-AGGGGCACTGATGTGCAAATAGGGGTACCAAAGTACAAACA-GGGC
107625870 -ACTAATGT
64 AACTAATGT
107625878 AAAAACATGG
Statistics
Matches: 126, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
79 3 0.02
80 115 0.91
81 8 0.06
ACGTcount: A:0.37, C:0.15, G:0.30, T:0.18
Consensus pattern (81 bp):
GGGTACCGAAGTACAAATAGGGGCACTGATGTGCAAATAGGGGTACCAAAGTACAAACAGGGCAA
CTAATGTGCAAACAAA
Found at i:107625782 original size:20 final size:20
Alignment explanation
Indices: 107625683--107625868 Score: 54
Period size: 20 Copynumber: 9.3 Consensus size: 20
107625673 AATGTGCATT
* *
107625683 TAGGGGTACCAAAGTACAAT
1 TAGGGGTACCGAAGTACAAA
* * * *
107625703 TAGGGGAACTGATGTGCAAA
1 TAGGGGTACCGAAGTACAAA
* * * *
107625723 AAAGGGTAGC-AGAGTACAAC
1 TAGGGGTACCGA-AGTACAAA
* ** * *
107625743 TAGGGGCATTGATGTGCAAA
1 TAGGGGTACCGAAGTACAAA
107625763 TAGGGGTACCGAAGTACAAA
1 TAGGGGTACCGAAGTACAAA
* ** * *
107625783 CAGGGCCA-CTAATGTGCAAA
1 TAGGGGTACCGAA-GTACAAA
* **
107625803 CAAAGGTACCGAAGTAC-AA
1 TAGGGGTACCGAAGTACAAA
* * * *
107625822 TCAGGGGCACTGATGTGCAAA
1 T-AGGGGTACCGAAGTACAAA
* * *
107625843 CAGGGGTACTGAAGTAAAAA
1 TAGGGGTACCGAAGTACAAA
107625863 TAGGGG
1 TAGGGG
107625869 CACTAATGTA
Statistics
Matches: 109, Mismatches: 51, Indels: 12
0.63 0.30 0.07
Matches are distributed among these distances:
19 6 0.06
20 97 0.89
21 6 0.06
ACGTcount: A:0.38, C:0.15, G:0.31, T:0.17
Consensus pattern (20 bp):
TAGGGGTACCGAAGTACAAA
Found at i:107625879 original size:20 final size:20
Alignment explanation
Indices: 107625823--107625884 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
107625813 GAAGTACAAT
* **
107625823 CAGGGGCACTGATGTGCAAA
1 CAGGGGCACTAATGTAAAAA
*
107625843 CAGGGGTACTGAA-GTAAAAA
1 CAGGGGCACT-AATGTAAAAA
*
107625863 TAGGGGCACTAATGTAAAAA
1 CAGGGGCACTAATGTAAAAA
107625883 CA
1 CA
107625885 TGGGTACTTC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
19 2 0.06
20 30 0.91
21 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.16
Consensus pattern (20 bp):
CAGGGGCACTAATGTAAAAA
Found at i:107625884 original size:40 final size:40
Alignment explanation
Indices: 107625643--107625891 Score: 187
Period size: 40 Copynumber: 6.2 Consensus size: 40
107625633 AATGTGTGAT
* ** * **
107625643 CAGGGGTATCGAAGTGCAAATAGGGGCACAAATGTGCATT
1 CAGGGGTACCGAAGTAAAAATAGGGGCACTAATGTGCAAA
* * * * * *
107625683 TAGGGGTACCAAAGTACAATTAGGGGAACTGATGTGCAAA
1 CAGGGGTACCGAAGTAAAAATAGGGGCACTAATGTGCAAA
* * * * * * *
107625723 AAAGGGTAGC-AGAGTACAACTAGGGGCATTGATGTGCAAA
1 CAGGGGTACCGA-AGTAAAAATAGGGGCACTAATGTGCAAA
* * * *
107625763 TAGGGGTACCGAAGTACAAACAGGGCCACTAATGTGCAAA
1 CAGGGGTACCGAAGTAAAAATAGGGGCACTAATGTGCAAA
** * *
107625803 CAAAGGTACCGAAGT-ACAATCAGGGGCACTGATGTGCAAA
1 CAGGGGTACCGAAGTAAAAAT-AGGGGCACTAATGTGCAAA
* **
107625843 CAGGGGTACTGAAGTAAAAATAGGGGCACTAATGTAAAAA
1 CAGGGGTACCGAAGTAAAAATAGGGGCACTAATGTGCAAA
*
107625883 CATGGGTAC
1 CAGGGGTAC
107625892 TTCATCATTT
Statistics
Matches: 165, Mismatches: 40, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
39 3 0.02
40 157 0.95
41 5 0.03
ACGTcount: A:0.37, C:0.15, G:0.30, T:0.18
Consensus pattern (40 bp):
CAGGGGTACCGAAGTAAAAATAGGGGCACTAATGTGCAAA
Found at i:107629526 original size:21 final size:21
Alignment explanation
Indices: 107629474--107629515 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
107629464 CGTTAAATTG
*
107629474 CACATGGCCGTGTGGGTCAAT
1 CACACGGCCGTGTGGGTCAAT
107629495 CACACGGCCGTGTGGGTCAAT
1 CACACGGCCGTGTGGGTCAAT
107629516 AGCCAGGCCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.21
Consensus pattern (21 bp):
CACACGGCCGTGTGGGTCAAT
Found at i:107635726 original size:12 final size:11
Alignment explanation
Indices: 107635709--107635741 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
107635699 AGCACTCTGT
107635709 AAATATTTATAA
1 AAATATTTAT-A
107635721 AAATATTTAT-
1 AAATATTTATA
107635731 AAATATTTATA
1 AAATATTTATA
107635742 GTTTGTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
12 10 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
AAATATTTATA
Found at i:107639891 original size:47 final size:48
Alignment explanation
Indices: 107639775--107639894 Score: 154
Period size: 47 Copynumber: 2.5 Consensus size: 48
107639765 AAGCGATACC
* * *
107639775 TTGATTTGGCTATGGGCCATGGTATAGGTATTTCGGGGAAGATTTACT
1 TTGATTTGGCTATGGGCCATGGTATAGGTATCTCCGGGAAGAGTTACT
* *
107639823 TTGATTTAGCTATGGGTCATGGTATAGGTA-CTCCGGGATA-AGTTACT
1 TTGATTTGGCTATGGGCCATGGTATAGGTATCTCCGGGA-AGAGTTACT
* *
107639870 TTGATTTGGCTACGAGCCATGGTAT
1 TTGATTTGGCTATGGGCCATGGTAT
107639895 TTGTACTTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
47 33 0.53
48 29 0.47
ACGTcount: A:0.22, C:0.12, G:0.29, T:0.37
Consensus pattern (48 bp):
TTGATTTGGCTATGGGCCATGGTATAGGTATCTCCGGGAAGAGTTACT
Found at i:107647123 original size:6 final size:6
Alignment explanation
Indices: 107647112--107647273 Score: 156
Period size: 6 Copynumber: 26.8 Consensus size: 6
107647102 AACCAAAATG
*
107647112 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
107647160 AGTAAT- AGAATC AGAATC AGAATC AGAATT AGGTGAT- AGAATT AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
107647209 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
*
107647257 AAAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
107647274 TACGTGACAG
Statistics
Matches: 132, Mismatches: 11, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
5 12 0.09
6 108 0.82
7 9 0.07
8 3 0.02
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.22
Consensus pattern (6 bp):
AGAATC
Found at i:107647127 original size:30 final size:29
Alignment explanation
Indices: 107647091--107647298 Score: 185
Period size: 30 Copynumber: 7.1 Consensus size: 29
107647081 AAGAAACATT
* * *
107647091 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
107647121 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
*
107647151 ATCA-ATATTAGTAATAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* * *
107647181 ATCAGAATTAGGTGATAGAATTAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
107647212 ATC---A--GTAACAGAATCAGAATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
* *
107647236 ATCAGTATTAGTAACAGAATCAAAATCAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
* *
107647266 ATCAGAATTACGTGACAGAATCAAAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
107647297 AT
1 AT
107647299 GTGAATGCAA
Statistics
Matches: 150, Mismatches: 16, Indels: 23
0.79 0.08 0.12
Matches are distributed among these distances:
24 20 0.13
27 1 0.01
28 1 0.01
29 1 0.01
30 81 0.54
31 46 0.31
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:107647211 original size:85 final size:85
Alignment explanation
Indices: 107647112--107647298 Score: 311
Period size: 85 Copynumber: 2.2 Consensus size: 85
107647102 AACCAAAATG
* *
107647112 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAATAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
* *
107647177 CAGAATCAGAATTAGGTGAT
66 CAGAATCAGAATTACGTGAC
* *
107647197 AGAATTAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAAAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
107647262 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
*
107647282 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
107647299 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
CAGAATCAGAATTACGTGAC
Found at i:107647702 original size:22 final size:22
Alignment explanation
Indices: 107647654--107647712 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
107647644 GTAAATACGT
*
107647654 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
107647676 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
107647698 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
107647713 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:107647845 original size:26 final size:27
Alignment explanation
Indices: 107647816--107647870 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
107647806 TTCACCAAAT
107647816 ACAGATA-TTGTGGCAGAGCCACAAGA
1 ACAGATATTTGTGGCAGAGCCACAAGA
* *
107647842 ACAGATATTTGTGGCATAGCCACCAGA
1 ACAGATATTTGTGGCAGAGCCACAAGA
107647869 AC
1 AC
107647871 GCTTCCTCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGAGCCACAAGA
Found at i:107648099 original size:27 final size:27
Alignment explanation
Indices: 107648069--107648264 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
107648059 GGGGCAAAAT
* * *
107648069 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
107648096 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
107648123 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * * *
107648150 AATAATTTTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
107648177 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
107648204 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
107648231 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
107648258 AGTAATT
1 GGTAATT
107648265 TCACAATCAA
Statistics
Matches: 142, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:107648213 original size:81 final size:82
Alignment explanation
Indices: 107648071--107648264 Score: 248
Period size: 81 Copynumber: 2.4 Consensus size: 82
107648061 GGCAAAATGG
* * * * * *
107648071 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
107648136 TACAAGGGTATTTCA-A
66 TACAAGGGTATTTCAGA
* * * *
107648152 TAATTTTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCT
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
* *
107648217 TATAGGGGTATTTCAGA
66 TACAAGGGTATTTCAGA
* *
107648234 -AATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTTTACCCTACAGGGGTATTTCGGTAATT
107648265 TCACAATCAA
Statistics
Matches: 97, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
81 96 0.99
82 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (82 bp):
TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
TACAAGGGTATTTCAGA
Found at i:107648299 original size:27 final size:27
Alignment explanation
Indices: 107648269--107648572 Score: 324
Period size: 27 Copynumber: 11.3 Consensus size: 27
107648259 GTAATTTCAC
* *
107648269 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
107648296 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
107648323 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * * **
107648350 AATCAAGGGTAAATCAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
107648377 AATCGAGCGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*** *
107648404 AATCGAGGGTAAAATAATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
107648431 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
107648458 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
107648485 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
107648512 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
107648539 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
107648566 AATCGAG
1 AATCGAG
107648573 AGTACTTTGG
Statistics
Matches: 226, Mismatches: 47, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.01
27 222 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:107648570 original size:108 final size:108
Alignment explanation
Indices: 107648259--107648593 Score: 487
Period size: 108 Copynumber: 3.1 Consensus size: 108
107648249 GGGTATTTCA
* *
107648259 GTAATTTCAC-AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA-CGATAATTTTGT
1 GTAATTTTACAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAG-TAATTTTGT
* * * *
107648322 AAACTGAGGGTAAACCAGTAATTCTGTAAATCAAGGGT-AAATCA
65 AAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT-G
* * * *
107648366 GTAATTTTACAAATCGAGCGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAATAATTTTGTA
1 GTAATTTTACAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTA
* *
107648431 AATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
66 AACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
107648474 GTAATTTTACAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTA
1 GTAATTTTACAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTA
* ***
107648539 AACTGAGGGTAAAACGGTAATTCTGTAAATCGAGAGTACTTTG
66 AACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
107648582 GTAATTTTACAA
1 GTAATTTTACAA
107648594 GTCGAGGACA
Statistics
Matches: 203, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
107 9 0.04
108 190 0.94
109 4 0.02
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (108 bp):
GTAATTTTACAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTA
AACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
Found at i:107648589 original size:54 final size:53
Alignment explanation
Indices: 107648274--107648572 Score: 386
Period size: 54 Copynumber: 5.5 Consensus size: 53
107648264 TTCACAATCA
*
107648274 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA-CGATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAG-TAATTTTGTAAA-TG
* * * * **
107648328 AGGGTAAACCAGTAATTCTGTAAATCAAGGGT-AAATCAGTAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT-AGTAATTTTGTAAAT-G
* * *
107648382 AGCGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAATAATTTTGTAAATTG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAA-TG
* ** *
107648436 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTACAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAAT-G
107648490 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAA-TG
*
107648544 AGGGTAAAACGGTAATTCTGTAAATCGAG
1 AGGGTAAAACGGTAATTCTATAAATCGAG
107648573 AGTACTTTGG
Statistics
Matches: 212, Mismatches: 26, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
53 5 0.02
54 200 0.94
55 7 0.03
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (53 bp):
AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATG
Found at i:107649701 original size:47 final size:49
Alignment explanation
Indices: 107649583--107649711 Score: 147
Period size: 47 Copynumber: 2.7 Consensus size: 49
107649573 GCGAGCGATG
* ***
107649583 CCTTGATTTGGCTATGGGCCATGGTATAGGTA-TTTTGGAGAAGAGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGGAGAAGAGTTA
* * * * * *
107649631 TCTTGATTTAGCTAGGGGTCATGGTATATGTACTCCAGGA-TA-AGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGGAGAAGAGTTA
107649678 CCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACT
107649712 TATCGATTGA
Statistics
Matches: 66, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
47 34 0.52
48 28 0.42
49 4 0.06
ACGTcount: A:0.22, C:0.14, G:0.29, T:0.35
Consensus pattern (49 bp):
CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGGAGAAGAGTTA
Found at i:107650812 original size:105 final size:105
Alignment explanation
Indices: 107650682--107650883 Score: 323
Period size: 105 Copynumber: 1.9 Consensus size: 105
107650672 TATGGCCTGG
* * * * * *
107650682 ACACACGCCCATGCCCATACATGTGTGACTCACACGGCCTGGGTACACACTCGTGTCCCTGCTCG
1 ACACACGCCCATGCCCATACATGTGTAACTCACACGGCCTAGATACACACCCGTGTCCCTGCCCA
107650747 TGTGGCTTTTATACCAAAAATAGTGATTTACACAAACCAA
66 TGTGGCTTTTATACCAAAAATAGTGATTTACACAAACCAA
* * *
107650787 ACACATGCCCGTGTCCATACATGTGTAACTCACACGGCCTAGATACACACCCGTGTCCCTGCCCA
1 ACACACGCCCATGCCCATACATGTGTAACTCACACGGCCTAGATACACACCCGTGTCCCTGCCCA
107650852 TGTGGCTTTTATACCAAAAATAGTGATTTACA
66 TGTGGCTTTTATACCAAAAATAGTGATTTACA
107650884 TGGACCAGAC
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
105 88 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (105 bp):
ACACACGCCCATGCCCATACATGTGTAACTCACACGGCCTAGATACACACCCGTGTCCCTGCCCA
TGTGGCTTTTATACCAAAAATAGTGATTTACACAAACCAA
Found at i:107650896 original size:105 final size:105
Alignment explanation
Indices: 107650681--107650906 Score: 317
Period size: 105 Copynumber: 2.2 Consensus size: 105
107650671 ATATGGCCTG
* * * * * * *
107650681 GACACACGCCCATGCCCATACATGTGTGACTCACACGGCCTGGGTACACACTCGTGTCCCTGCTC
1 GACACACGCCCGTGTCCATACATGTGTAACTCACACGGCCTAGATACACACCCGTGTCCCTGCCC
*
107650746 GTGTGGCTTTTATACCAAAAATAGTGATTTACACAAACCA
66 ATGTGGCTTTTATACCAAAAATAGTGATTTACACAAACCA
* *
107650786 AACACATGCCCGTGTCCATACATGTGTAACTCACACGGCCTAGATACACACCCGTGTCCCTGCCC
1 GACACACGCCCGTGTCCATACATGTGTAACTCACACGGCCTAGATACACACCCGTGTCCCTGCCC
***
107650851 ATGTGGCTTTTATACCAAAAATAGTGATTTACATGGACCA
66 ATGTGGCTTTTATACCAAAAATAGTGATTTACACAAACCA
* *
107650891 GACACAGGCCTGTGTC
1 GACACACGCCCGTGTC
107650907 TGTTGCTCGT
Statistics
Matches: 105, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
105 105 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (105 bp):
GACACACGCCCGTGTCCATACATGTGTAACTCACACGGCCTAGATACACACCCGTGTCCCTGCCC
ATGTGGCTTTTATACCAAAAATAGTGATTTACACAAACCA
Found at i:107655194 original size:34 final size:34
Alignment explanation
Indices: 107655154--107655222 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
107655144 GAGAAATACT
107655154 TGTTCTTATTCTTGATTGTGAAATTAACCCTTGC
1 TGTTCTTATTCTTGATTGTGAAATTAACCCTTGC
107655188 TGTTCTTATTCTTGATTGTGAAATTAACCCTTGC
1 TGTTCTTATTCTTGATTGTGAAATTAACCCTTGC
107655222 T
1 T
107655223 TTAATATTGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.48
Consensus pattern (34 bp):
TGTTCTTATTCTTGATTGTGAAATTAACCCTTGC
Found at i:107660818 original size:20 final size:20
Alignment explanation
Indices: 107660793--107660841 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
107660783 TTCAGCCTCT
107660793 TCGACACTCTAGAGATGTCA
1 TCGACACTCTAGAGATGTCA
107660813 TCGACACTCTAGAGATGTCA
1 TCGACACTCTAGAGATGTCA
107660833 TCGACACTC
1 TCGACACTC
107660842 ACACTAGTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (20 bp):
TCGACACTCTAGAGATGTCA
Found at i:107663365 original size:91 final size:91
Alignment explanation
Indices: 107663210--107663393 Score: 350
Period size: 91 Copynumber: 2.0 Consensus size: 91
107663200 TAATTAGAAA
107663210 GAGATTTCAATTAATCAACTTAGAGTCAGTTGTTTTTAGTGTCAAGAGAGATATTAACATAAATC
1 GAGATTTCAATTAATCAACTTAGAGTCAGTTGTTTTTAGTGTCAAGAGAGATATTAACATAAATC
*
107663275 AGGGATTTCTACGGATTAAGTCAAGT
66 AGGGATTTCTACGGAATAAGTCAAGT
*
107663301 GAGATTTCAATTAATCAACTTAGAGTCAGTTGTTTTTAGTGTCGAGAGAGATATTAACATAAATC
1 GAGATTTCAATTAATCAACTTAGAGTCAGTTGTTTTTAGTGTCAAGAGAGATATTAACATAAATC
107663366 AGGGATTTCTACGGAATAAGTCAAGT
66 AGGGATTTCTACGGAATAAGTCAAGT
107663392 GA
1 GA
107663394 ATAAATCTTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (91 bp):
GAGATTTCAATTAATCAACTTAGAGTCAGTTGTTTTTAGTGTCAAGAGAGATATTAACATAAATC
AGGGATTTCTACGGAATAAGTCAAGT
Found at i:107680969 original size:15 final size:14
Alignment explanation
Indices: 107680947--107680981 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
107680937 AATAAAAGGA
107680947 AAATAAAATAAGAT
1 AAATAAAATAAGAT
107680961 AAGATAAAATAAGAT
1 AA-ATAAAATAAGAT
107680976 AAATAA
1 AAATAA
107680982 TCGAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (14 bp):
AAATAAAATAAGAT
Found at i:107687500 original size:15 final size:16
Alignment explanation
Indices: 107687478--107687517 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
107687468 CAGCTAGAAT
107687478 AAAAAGAAAA-A-AGG
1 AAAAAGAAAATAGAGG
107687492 AAGAAAGAAAATAGAGG
1 AA-AAAGAAAATAGAGG
107687509 AAAAAGAAA
1 AAAAAGAAA
107687518 TCGGCGCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 2 0.09
15 8 0.35
16 8 0.35
17 5 0.22
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.03
Consensus pattern (16 bp):
AAAAAGAAAATAGAGG
Found at i:107688857 original size:34 final size:35
Alignment explanation
Indices: 107688786--107688857 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
107688776 CATATCCTAT
*
107688786 CTACAGTCTCAGTCTTCTAAAGTTTTCAGTTTTCC
1 CTACAGTCTCAGTCTTCTAAAGTTTTCAGTTTACC
* *
107688821 CTACTGTCTCAGT-TTCTACAGTTTT-AGTATTACC
1 CTACAGTCTCAGTCTTCTAAAGTTTTCAGT-TTACC
107688855 CTA
1 CTA
107688858 ACTACAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 3 0.09
34 18 0.55
35 12 0.36
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTTCAGTTTACC
Found at i:107690380 original size:27 final size:26
Alignment explanation
Indices: 107690324--107690380 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
107690314 CAATCTTAAC
* * *
107690324 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
**
107690350 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
107690377 CCTA
1 CCTA
107690381 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:107694103 original size:84 final size:84
Alignment explanation
Indices: 107693961--107694130 Score: 295
Period size: 84 Copynumber: 2.0 Consensus size: 84
107693951 CTTCTATGAT
* *
107693961 ATCTTCCACGAGTTCGTCTAATATGGCCATCATACAGCGTTGAAAAGTGGTAGAAGCATTACATA
1 ATCTTCCACGAGTTCGTCTAAGATGGCCATCATACAGCGTTAAAAAGTGGTAGAAGCATTACATA
*
107694026 ATCCAAAAGGCATTGTACG
66 ATCCAAAAGGCATTCTACG
* *
107694045 ATCTTCCATGAGTTCGTCTAAGATGGCCATCATACAGCGTTAAAAAGTGGTAGGAGCATTACATA
1 ATCTTCCACGAGTTCGTCTAAGATGGCCATCATACAGCGTTAAAAAGTGGTAGAAGCATTACATA
107694110 ATCCAAAAGGCATTCTACG
66 ATCCAAAAGGCATTCTACG
107694129 AT
1 AT
107694131 AAGCGAACGT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (84 bp):
ATCTTCCACGAGTTCGTCTAAGATGGCCATCATACAGCGTTAAAAAGTGGTAGAAGCATTACATA
ATCCAAAAGGCATTCTACG
Found at i:107704568 original size:14 final size:13
Alignment explanation
Indices: 107704545--107704576 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
107704535 GGGATATCAA
107704545 AACAATAATTAAG
1 AACAATAATTAAG
107704558 AACATATAATTAAG
1 AACA-ATAATTAAG
107704572 AACAA
1 AACAA
107704577 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.09, G:0.06, T:0.22
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:107708273 original size:27 final size:27
Alignment explanation
Indices: 107708243--107708420 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
107708233 ATATTGAGTC
* * * *
107708243 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
107708270 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
107708297 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
107708325 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
107708352 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
107708379 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
107708406 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
107708421 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:107708382 original size:82 final size:81
Alignment explanation
Indices: 107708264--107708419 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
107708254 TGCTATATAA
* *
107708264 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
107708329 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
107708346 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
107708410 CACTTAGTGC
65 CACTTAGTGC
107708420 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:107716389 original size:27 final size:27
Alignment explanation
Indices: 107716359--107716536 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
107716349 ATATTGAGTC
* * * *
107716359 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
107716386 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
107716413 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
107716441 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
107716468 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
107716495 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
107716522 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
107716537 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:107716498 original size:82 final size:81
Alignment explanation
Indices: 107716380--107716535 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
107716370 TGCTATATAA
* *
107716380 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
107716445 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
107716462 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
107716526 CACTTAGTGC
65 CACTTAGTGC
107716536 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:107720201 original size:40 final size:40
Alignment explanation
Indices: 107720092--107720274 Score: 184
Period size: 40 Copynumber: 4.6 Consensus size: 40
107720082 GCTCCTCGTT
*
107720092 CAAATGCCTTCGGACATAGCCGCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGACTTAGCC-CGGATT-TAGTAATCTCGCA
*
107720132 C-AATGCCTTCAGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAATCTCGCA
*
107720170 CAAATGCCTTCGGATCTTAGTCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAATCTCGCA
* * * * *
107720210 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAATC-TCGCA
107720251 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGA
107720275 CATCATTCAA
Statistics
Matches: 127, Mismatches: 8, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
37 2 0.02
38 15 0.12
39 35 0.28
40 66 0.52
41 9 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAATCTCGCA
Found at i:107728090 original size:40 final size:40
Alignment explanation
Indices: 107728031--107728214 Score: 107
Period size: 40 Copynumber: 4.6 Consensus size: 40
107728021 TCCTCGTTCA
*
107728031 AAATGCCTTC-GGACATAGCCCGGTTATAGTAATTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCAC
* * *
107728070 AAATGCCTTCGGGCCTTAGCCC-G-AATAGTATCTTCGCAAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTA-ATTCGC-AC
* * *
107728110 AAATGCCTTC-AGATCTTAGTCCGATT-TAGT-ATCTCGCAC
1 AAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAT-TCGCAC
* * * * *
107728149 AAAATGCCATTC-GGATCTTAG-TCGGATATGGTCACTTAGCA-
1 -AAATGCC-TTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCAC
*
107728190 AAAAGCCTTCGGGTACTTAGCCCGG
1 AAATGCCTTCGGG-ACTTAGCCCGG
107728215 ACATCATTCA
Statistics
Matches: 111, Mismatches: 19, Indels: 28
0.70 0.12 0.18
Matches are distributed among these distances:
38 6 0.05
39 23 0.21
40 55 0.50
41 22 0.20
42 4 0.04
43 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCAC
Found at i:107728171 original size:41 final size:40
Alignment explanation
Indices: 107728029--107728169 Score: 139
Period size: 40 Copynumber: 3.5 Consensus size: 40
107728019 GCTCCTCGTT
* *
107728029 CAAAATGCCTTCGGA-CATAGCCCGGTTATAGTAAT-TCGCA
1 CAAAATGCCTTCGGATCTTAGCCCGATT-TAGT-ATCTCGCA
** *
107728069 C-AAATGCCTTCGGGCCTTAGCCCGA-ATAGTATCTTCGCA
1 CAAAATGCCTTCGGATCTTAGCCCGATTTAGTATC-TCGCA
* *
107728108 -ACAAATGCCTTCAGATCTTAGTCCGATTTAGTATCTCGCA
1 CA-AAATGCCTTCGGATCTTAGCCCGATTTAGTATCTCGCA
107728148 CAAAATGCCATTCGGATCTTAG
1 CAAAATGCC-TTCGGATCTTAG
107728170 TCGGATATGG
Statistics
Matches: 83, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
37 2 0.02
38 4 0.05
39 17 0.20
40 41 0.49
41 19 0.23
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (40 bp):
CAAAATGCCTTCGGATCTTAGCCCGATTTAGTATCTCGCA
Found at i:107766909 original size:93 final size:93
Alignment explanation
Indices: 107766796--107766967 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
107766786 CGCCCATAAG
* *
107766796 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
107766861 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
107766889 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
107766954 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
107766968 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:107766964 original size:46 final size:46
Alignment explanation
Indices: 107766789--107766964 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
107766779 TGTAACCCGC
* * *
107766789 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
107766835 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
107766885 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
107766928 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
107766965 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:107774388 original size:47 final size:49
Alignment explanation
Indices: 107774312--107774444 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 49
107774302 TGTAACCCGC
107774312 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
107774362 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
107774405 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
107774445 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.40
47 30 0.42
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:107774460 original size:46 final size:44
Alignment explanation
Indices: 107774320--107774460 Score: 135
Period size: 46 Copynumber: 3.0 Consensus size: 44
107774310 GCCCATAAGC
*
107774320 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
107774367 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
107774413 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
107774459 GA
1 GA
107774461 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 31 0.39
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:107780322 original size:31 final size:31
Alignment explanation
Indices: 107780287--107780345 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
107780277 AAAAAGTATG
107780287 TTAGCTCTCCCTTAGGCCTCATTCAGCCACA
1 TTAGCTCTCCCTTAGGCCTCATTCAGCCACA
107780318 TTAGCTCTCCCTTAGGCCTCATTCAGCC
1 TTAGCTCTCCCTTAGGCCTCATTCAGCC
107780346 CTTAAGGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.17, C:0.39, G:0.14, T:0.31
Consensus pattern (31 bp):
TTAGCTCTCCCTTAGGCCTCATTCAGCCACA
Found at i:107785033 original size:46 final size:47
Alignment explanation
Indices: 107784876--107785134 Score: 173
Period size: 46 Copynumber: 5.5 Consensus size: 47
107784866 CATTATGAGA
* ** *
107784876 CATGTCTGGGACATGGCATTGGC-ATTGAGATG-AGTGCCAATGTAAGA-
1 CATGTCTGGGACATGGCATCGGCTA-CAAGATGTAGT--CAGTGTAAGAC
* ** * *
107784923 CATGTCTGGGACAT-GCATCGGCTTCGGGACGTAAGCCAGTGTAAGA-
1 CATGTCTGGGACATGGCATCGGCTACAAGATGT-AGTCAGTGTAAGAC
*
107784969 CATGTTTGGGACAT-GCATCGGCTACAAGATGT-GTC-GATGTAAGAC
1 CATGTCTGGGACATGGCATCGGCTACAAGATGTAGTCAG-TGTAAGAC
*
107785014 CATGTCTGGGACATGGCATCGAG--A-AAGATATGTGAGAGCTAGTGTAAGAC
1 CATGTCTGGGACATGGCATCG-GCTACAAG--ATGT-AG-TC-AGTGTAAGAC
* *
107785064 CATGTCTGGGACATGGCATCGACCT-CGATGATGATAGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCG-GCTAC-AAGATG-TAGTCAGTGTAAGAC
* *
107785113 CATTTCTGGAACATGGCATCGG
1 CATGTCTGGGACATGGCATCGG
107785135 TACCTTACCC
Statistics
Matches: 172, Mismatches: 21, Indels: 37
0.75 0.09 0.16
Matches are distributed among these distances:
43 1 0.01
44 12 0.07
45 14 0.08
46 57 0.33
47 15 0.09
48 3 0.02
49 30 0.17
50 31 0.18
51 6 0.03
52 1 0.01
53 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
CATGTCTGGGACATGGCATCGGCTACAAGATGTAGTCAGTGTAAGAC
Found at i:107785042 original size:44 final size:50
Alignment explanation
Indices: 107784960--107785133 Score: 138
Period size: 49 Copynumber: 3.6 Consensus size: 50
107784950 GACGTAAGCC
* *
107784960 AGTGTAAGA-CATGTTTGGGACAT-GCATCG-GCTACAAG-ATGT-G-TCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAGC-ACAAGAATGTAGAGCG
*
107785005 A-TGTAAGACCATGTCTGGGACATGGCATCGAG-A-AAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAGCACAAGA-ATGT-AGAGCG
* * * *
107785054 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATG-ATGATAG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAGCAC-AAGAATG-TAGAGCG
* *
107785103 AGTGTAAGACCATTTCTGGAACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
107785134 GTACCTTACC
Statistics
Matches: 107, Mismatches: 9, Indels: 22
0.78 0.07 0.16
Matches are distributed among these distances:
44 10 0.09
45 15 0.14
46 10 0.09
47 1 0.01
48 1 0.01
49 31 0.29
50 31 0.29
51 5 0.05
52 1 0.01
53 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGAGCACAAGAATGTAGAGCG
Found at i:107795800 original size:48 final size:48
Alignment explanation
Indices: 107795748--107795843 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
107795738 TACTATCATG
107795748 CCAAATTTATAGTGAATAAAATCAACCTATATACATACTCCTAACCAA
1 CCAAATTTATAGTGAATAAAATCAACCTATATACATACTCCTAACCAA
107795796 CCAAATTTATAGTGAATAAAATCAACCTATATACATACTCCTAACCAA
1 CCAAATTTATAGTGAATAAAATCAACCTATATACATACTCCTAACCAA
107795844 TCACTTGTAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.46, C:0.23, G:0.04, T:0.27
Consensus pattern (48 bp):
CCAAATTTATAGTGAATAAAATCAACCTATATACATACTCCTAACCAA
Found at i:107800447 original size:39 final size:39
Alignment explanation
Indices: 107800404--107800563 Score: 239
Period size: 39 Copynumber: 4.1 Consensus size: 39
107800394 ATGCAAGATA
*
107800404 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
107800443 CTGGAAATGTATCTGGGTTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
107800482 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * * *
107800521 CAGGAAATGTTTACGGGCTAAAGTCCTGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
107800560 CTGG
1 CTGG
107800564 TAATATAATT
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 108 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:107803939 original size:54 final size:55
Alignment explanation
Indices: 107803859--107803984 Score: 191
Period size: 55 Copynumber: 2.3 Consensus size: 55
107803849 TAGGCTCAAG
* * * *
107803859 GACTAAATTGAATAAAAGTAAATTTTTAGGGGTAATTTTGT-AAAAATATTAAAAT
1 GACTAAATTGCAT-AAGGTAAATTTTTAAGGGCAATTTTGTAAAAAATATTAAAAT
*
107803914 GACTAAATTGCATAAGGTAAATTTTTAAGGGCAATTTTGTAAAAAATGTTAAAAT
1 GACTAAATTGCATAAGGTAAATTTTTAAGGGCAATTTTGTAAAAAATATTAAAAT
107803969 GACTAAATTGCATAAG
1 GACTAAATTGCATAAG
107803985 ATACATTGTT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 24 0.37
55 41 0.63
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (55 bp):
GACTAAATTGCATAAGGTAAATTTTTAAGGGCAATTTTGTAAAAAATATTAAAAT
Found at i:107804509 original size:26 final size:26
Alignment explanation
Indices: 107804444--107804520 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 26
107804434 TGAGTAGGCC
**
107804444 CATTTCACAGCTCAGGTAAGCATATG
1 CATTTCACAGCTTGGGTAAGCATATG
* * *
107804470 CATTTAACAACTTGGGTAAGCATATT
1 CATTTCACAGCTTGGGTAAGCATATG
* * *
107804496 CATTTCATAGCTTGTGTGAGCATAT
1 CATTTCACAGCTTGGGTAAGCATAT
107804521 ATGTACAGGA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (26 bp):
CATTTCACAGCTTGGGTAAGCATATG
Found at i:107824285 original size:17 final size:17
Alignment explanation
Indices: 107824263--107824302 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
107824253 AACTGAGCCG
*
107824263 TGTGGGCCTCAT-AGACA
1 TGTGGGCCCCATAAGA-A
107824280 TGTGGGCCCCATAAGAA
1 TGTGGGCCCCATAAGAA
107824297 TGTGGG
1 TGTGGG
107824303 TGCCACATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.23
Consensus pattern (17 bp):
TGTGGGCCCCATAAGAA
Found at i:107829130 original size:47 final size:47
Alignment explanation
Indices: 107829032--107829159 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
107829022 AATCGATAAG
* * *** *
107829032 TACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCAAAAA
* * * *
107829079 TACCTATACCATGGCCCATAGCCAAATCAAGGTAGCTCCTCTAAAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCAAAAA
* *
107829126 TACCTATACCATGGCTCGTAGACAAATCAAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
107829160 TTATTCACAC
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCAAAAA
Found at i:107836825 original size:47 final size:47
Alignment explanation
Indices: 107836772--107836943 Score: 145
Period size: 47 Copynumber: 3.7 Consensus size: 47
107836762 ACGAAGCTTA
*
107836772 GCCGATGCATGTCCCAGACAGGTCTTACACTGACTACCATCATTGAG
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTACCATCATTGAG
* * * *
107836819 GCCGATGCATGTCCCAGGCATGTCTTACATTGGC-ACTCATC-TCT-AC
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTAC-CATCAT-TGAG
* * * * * * *
107836865 ACCAATGCCATGTCCCAGACATGGTCTTACACAGGCTATCGT-AATGTG
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGCTACCATCATTGAG
* **
107836913 GCTGATGCATGTCCCAGACACATCTTACACT
1 GCCGATGCATGTCCCAGACAGGTCTTACACT
107836944 AGCCCTAGTC
Statistics
Matches: 96, Mismatches: 22, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
46 17 0.18
47 61 0.64
48 17 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTACCATCATTGAG
Found at i:107836920 original size:94 final size:95
Alignment explanation
Indices: 107836779--107836990 Score: 225
Period size: 94 Copynumber: 2.3 Consensus size: 95
107836769 TTAGCCGATG
* * * **
107836779 CATGTCCCAGACA-GGTCTTACACTGACTACCATCATTGAGGCCGATGCATGTCCCAGGCATGTC
1 CATGTCCCAGACATGGTCTTACACAGACTACCATCAATGAGGCCGATGCATGTCCCAGACACATC
* * *
107836843 TTACATTGGCACTCA-TCTCTACACCAATGC
66 TTACACTAGCACT-AGTCTCAACACCAATGC
* * * * *
107836873 CATGTCCCAGACATGGTCTTACACAGGCTATCGT-AATGTGGCTGATGCATGTCCCAGACACATC
1 CATGTCCCAGACATGGTCTTACACAGACTACCATCAATGAGGCCGATGCATGTCCCAGACACATC
* ** *
107836937 TTACACTAGCCCTAGTCTCAATGCCGATGC
66 TTACACTAGCACTAGTCTCAACACCAATGC
107836967 CATGTCCCA-ATCATGGTCTTACAC
1 CATGTCCCAGA-CATGGTCTTACAC
107836991 TTGCTCTCAC
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
93 2 0.02
94 80 0.82
95 16 0.16
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (95 bp):
CATGTCCCAGACATGGTCTTACACAGACTACCATCAATGAGGCCGATGCATGTCCCAGACACATC
TTACACTAGCACTAGTCTCAACACCAATGC
Found at i:107852028 original size:10 final size:10
Alignment explanation
Indices: 107851997--107852047 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
107851987 GGAGAGAACC
*
107851997 AAGAGTCAAA
1 AAGAGCCAAA
*
107852007 AGGAGCCAAA
1 AAGAGCCAAA
107852017 AATGAGCCAAA
1 AA-GAGCCAAA
*
107852028 AAGAGACAAA
1 AAGAGCCAAA
107852038 ACAGA-CCAAA
1 A-AGAGCCAAA
107852048 TCGAGAAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
10 21 0.62
11 13 0.38
ACGTcount: A:0.59, C:0.18, G:0.20, T:0.04
Consensus pattern (10 bp):
AAGAGCCAAA
Found at i:107861106 original size:94 final size:94
Alignment explanation
Indices: 107860999--107861172 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 94
107860989 CATTTAGGCC
* * *
107860999 GATGCATGTCCCAGACACGTCTTACACTAGCACTCATCTCTATGCC-AAGCCCATGTC-CTAAAC
1 GATGCATGTCCCAGACACATCTTACACTAGCACTCATCTCAATGCCGAAG-CAATGTCTC-AAAC
107861062 ATGGTCTTACACTGGCTATTGTAATGTGGCT
64 ATGGTCTTACACTGGCTATTGTAATGTGGCT
* * * *
107861093 GATGCATGTCCCAGACACATCTTACACTAGCCCTCGTCTCAATGCCGATGCAATGTCTCAGACAT
1 GATGCATGTCCCAGACACATCTTACACTAGCACTCATCTCAATGCCGAAGCAATGTCTCAAACAT
107861158 GGTCTTACACTGGCT
66 GGTCTTACACTGGCT
107861173 CTCACATAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
94 68 0.96
95 3 0.04
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (94 bp):
GATGCATGTCCCAGACACATCTTACACTAGCACTCATCTCAATGCCGAAGCAATGTCTCAAACAT
GGTCTTACACTGGCTATTGTAATGTGGCT
Found at i:107865119 original size:17 final size:18
Alignment explanation
Indices: 107865096--107865134 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
107865086 CTTATTAATC
*
107865096 TATTTTTTCTATTTAG-AT
1 TATTTTGTC-ATTTAGCAT
107865114 TATTTTGTCATTTAGCAT
1 TATTTTGTCATTTAGCAT
107865132 TAT
1 TAT
107865135 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (18 bp):
TATTTTGTCATTTAGCAT
Found at i:107865388 original size:19 final size:19
Alignment explanation
Indices: 107865364--107865406 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
107865354 ACTATCACAC
107865364 ATAAATATATGCAATTAAA
1 ATAAATATATGCAATTAAA
107865383 ATAAATATATGCAATTAAA
1 ATAAATATATGCAATTAAA
107865402 ATAAA
1 ATAAA
107865407 AAATAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAAATATATGCAATTAAA
Found at i:107875910 original size:24 final size:24
Alignment explanation
Indices: 107875878--107875938 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
107875868 AAACTAGCAT
* * *
107875878 ACATAGTGCCAATCGATTTCGCAC
1 ACATAGTGCCAATCAAATCCGCAC
*
107875902 ACATAGTGCCATTCAAATCCGCAC
1 ACATAGTGCCAATCAAATCCGCAC
*
107875926 ACTTAGTGCCAAT
1 ACATAGTGCCAAT
107875939 GTTGGCTCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.25
Consensus pattern (24 bp):
ACATAGTGCCAATCAAATCCGCAC
Found at i:107877694 original size:25 final size:25
Alignment explanation
Indices: 107877660--107877710 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
107877650 ACAAGATTTC
107877660 TTCAGTAGAAACATACTCTCGAGCA
1 TTCAGTAGAAACATACTCTCGAGCA
107877685 TTCAGTAGAAACATACTCTCGAGCA
1 TTCAGTAGAAACATACTCTCGAGCA
107877710 T
1 T
107877711 ACTTGCTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (25 bp):
TTCAGTAGAAACATACTCTCGAGCA
Found at i:107882925 original size:6 final size:6
Alignment explanation
Indices: 107882916--107882948 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
107882906 AATAAAATTG
*
107882916 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
107882949 GATAAGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:107889454 original size:12 final size:11
Alignment explanation
Indices: 107889427--107889462 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
107889417 ATTTTGTCCC
107889427 TTTTGGCTCGT
1 TTTTGGCTCGT
107889438 TTTTGGCTCGT
1 TTTTGGCTCGT
* *
107889449 TTTTTGCTCCT
1 TTTTGGCTCGT
107889460 TTT
1 TTT
107889463 GACTCTTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.00, C:0.19, G:0.19, T:0.61
Consensus pattern (11 bp):
TTTTGGCTCGT
Found at i:107892581 original size:30 final size:29
Alignment explanation
Indices: 107892544--107892705 Score: 105
Period size: 30 Copynumber: 5.4 Consensus size: 29
107892534 TGACACGAAC
* *
107892544 CCTTTTCATAATTCGATAGTCGAAGCTAT
1 CCTTTTCATAATTTGATAGTCGAAGCCAT
* * * * *
107892573 CACTTTTCACAATTTAATGGTGGTCA-CCAT
1 C-CTTTTCATAATTTGATAGTCG-AAGCCAT
* * * *
107892603 CCCTTTTCATTA-TTAATGGTCGTCA-CCAT
1 -CCTTTTCATAATTTGATAGTCG-AAGCCAT
* *
107892632 CCTTTTTCATAATTTGATAGTCGGAGCTAT
1 CC-TTTTCATAATTTGATAGTCGAAGCCAT
* *
107892662 CCCTTTTCATGATTTGATAGCCGAAGCCAT
1 -CCTTTTCATAATTTGATAGTCGAAGCCAT
107892692 CCTTTTTCATAATT
1 CC-TTTTCATAATT
107892706 CGATGGCCAT
Statistics
Matches: 105, Mismatches: 20, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
28 2 0.02
29 28 0.27
30 71 0.68
31 4 0.04
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.40
Consensus pattern (29 bp):
CCTTTTCATAATTTGATAGTCGAAGCCAT
Found at i:107892621 original size:29 final size:29
Alignment explanation
Indices: 107892586--107892641 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
107892576 TTTTCACAAT
*
107892586 TTAATGGTGGTCACCATCCCTTTTCATTA
1 TTAATGGTCGTCACCATCCCTTTTCATTA
*
107892615 TTAATGGTCGTCACCATCCTTTTTCAT
1 TTAATGGTCGTCACCATCCCTTTTCAT
107892642 AATTTGATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.43
Consensus pattern (29 bp):
TTAATGGTCGTCACCATCCCTTTTCATTA
Found at i:107892692 original size:89 final size:90
Alignment explanation
Indices: 107892543--107892759 Score: 219
Period size: 89 Copynumber: 2.4 Consensus size: 90
107892533 TTGACACGAA
* ** *
107892543 CCCTTTTCATAATTCGATAGTCGAAGCTATCACTTTTCACAATTTAATGGTGGTCACCATCCCTT
1 CCCTTTTCATAATTCGATAGTCGAAGCTATCACTTTTCACAATTTAATAGCCGTAACCATCCCTT
* * *
107892608 TTCATTATT-AATGGTCGTCACCAT
66 TTCATAATTCAATGGCCATCACCAT
* * * * ** * *
107892632 CCTTTTTCATAATTTGATAGTCGGAGCTATCCCTTTTCATGATTTGATAGCCG-AAGCCATCCTT
1 CCCTTTTCATAATTCGATAGTCGAAGCTATCACTTTTCACAATTTAATAGCCGTAA-CCATCCCT
*
107892696 TTTCATAATTCGATGGCCATCACCAT
65 TTTCATAATTCAATGGCCATCACCAT
*
107892722 CCCTTTTCATAA-TCAATAG-CTGAAGCTATTCA-TTTTCA
1 CCCTTTTCATAATTCGATAGTC-GAAGCTA-TCACTTTTCA
107892760 TTTGTCGATG
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
88 2 0.02
89 76 0.74
90 25 0.24
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.38
Consensus pattern (90 bp):
CCCTTTTCATAATTCGATAGTCGAAGCTATCACTTTTCACAATTTAATAGCCGTAACCATCCCTT
TTCATAATTCAATGGCCATCACCAT
Found at i:107894875 original size:29 final size:29
Alignment explanation
Indices: 107894839--107894925 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 29
107894829 TATATACATG
*
107894839 CATATGGCCCATCT-GACCCAGTTCATATT
1 CATATGGCCCAT-TAGACCCAATTCATATT
* * *
107894868 CTTATGGCCCATTAGGCCCAATTCACATT
1 CATATGGCCCATTAGACCCAATTCATATT
*
107894897 CATATGGCCCATTAGACCCAAATCATATT
1 CATATGGCCCATTAGACCCAATTCATATT
107894926 ATACTCATGC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 1 0.02
29 48 0.98
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.30
Consensus pattern (29 bp):
CATATGGCCCATTAGACCCAATTCATATT
Found at i:107895317 original size:13 final size:13
Alignment explanation
Indices: 107895299--107895362 Score: 85
Period size: 13 Copynumber: 4.9 Consensus size: 13
107895289 AGTTTGGCAA
107895299 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
107895312 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
107895325 TGCTTTT-AAGAAG
1 TGCTTTTGAA-AAG
* *
107895338 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
*
107895351 TGCTTTGGAAAA
1 TGCTTTTGAAAA
107895363 TTTTAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
12 2 0.05
13 41 0.93
14 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:107897143 original size:16 final size:16
Alignment explanation
Indices: 107897124--107897156 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
107897114 AAAATTTTAA
107897124 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
107897140 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
107897156 G
1 G
107897157 GGCGTTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.27, T:0.48
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:107898174 original size:27 final size:27
Alignment explanation
Indices: 107898144--107898341 Score: 213
Period size: 27 Copynumber: 7.3 Consensus size: 27
107898134 GGGGCAAAAT
* *
107898144 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
107898171 GGTAATTCTACCCTA-TAGAGGTATTTC
1 GGTAATTTTACCCTACAAG-GGTATTTC
*
107898198 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * * *
107898225 GATAATTCTACCTTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
107898252 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
107898279 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
107898306 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
107898333 AATAATTTT
1 GGTAATTTT
107898342 GTAAATCGAG
Statistics
Matches: 144, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
26 8 0.06
27 127 0.88
28 9 0.06
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:107898210 original size:54 final size:54
Alignment explanation
Indices: 107898148--107898332 Score: 273
Period size: 54 Copynumber: 3.4 Consensus size: 54
107898138 CAAAATGGTA
* * * *
107898148 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGAGGTATTTCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* *
107898201 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* *
107898255 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* *
107898309 AATTCTACCCTACAGGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
107898333 AATAATTTTG
Statistics
Matches: 119, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 4 0.03
54 115 0.97
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.36
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
Found at i:107898291 original size:81 final size:81
Alignment explanation
Indices: 107898146--107898332 Score: 243
Period size: 81 Copynumber: 2.3 Consensus size: 81
107898136 GGCAAAATGG
* * * * *
107898146 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGAGGTATTTCGATATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAAAGAGGTATTTCGATATTTCTACCC
107898211 TACAAGGGTATTTCGA
66 TACAAGGGTATTTCGA
* * * *
107898227 TAATTCTACCTTATAGGGGTATTTCGGTATTTCTACCCTACAAG-GGTATTTCGGTAATTT-TAC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTA-AAGAGGTATTTCGAT-ATTTCTAC
* *
107898290 CCTACAGGGGTATTTCGG
64 CCTACAAGGGTATTTCGA
107898308 TAATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTC
107898333 AATAATTTTG
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 85 0.93
82 6 0.07
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAAAGAGGTATTTCGATATTTCTACCC
TACAAGGGTATTTCGA
Found at i:107898419 original size:27 final size:27
Alignment explanation
Indices: 107898389--107898441 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
107898379 GGTACTTTGG
107898389 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* * *
107898416 TAATTTTATAGGTTGAGGGTATTTCA
1 TAATTTTACAAGTCGAGGGTATTTCA
107898442 GTACTTTGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:107910685 original size:31 final size:31
Alignment explanation
Indices: 107910647--107910716 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
107910637 TACTGGGCCG
107910647 AAGCCTTTTCATAAATCAAATCACTAGGCTA
1 AAGCCTTTTCATAAATCAAATCACTAGGCTA
* * *
107910678 AAGCCTTTTCATAAATCATATCACTGGGCTG
1 AAGCCTTTTCATAAATCAAATCACTAGGCTA
*
107910709 AAGACTTT
1 AAGCCTTT
107910717 ATTGTAAACG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.31
Consensus pattern (31 bp):
AAGCCTTTTCATAAATCAAATCACTAGGCTA
Found at i:107910800 original size:42 final size:42
Alignment explanation
Indices: 107910740--107910831 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
107910730 TGGCCCATAG
*
107910740 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
107910782 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
107910824 GCCCATTT
1 GCCCATTT
107910832 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:107910964 original size:26 final size:26
Alignment explanation
Indices: 107910917--107911016 Score: 148
Period size: 26 Copynumber: 3.9 Consensus size: 26
107910907 CCCTTTTTGG
*
107910917 TAAACTGGGGCA-AAGCCTTTTTCAA
1 TAAACTGGGGCATAAGCCCTTTTCAA
* * **
107910942 TAAACTAGGACATAAGCCCTTTTCGG
1 TAAACTGGGGCATAAGCCCTTTTCAA
107910968 TAAACTGGGGCATAAGCCCTTTTCAA
1 TAAACTGGGGCATAAGCCCTTTTCAA
107910994 TAAACTGGGGCATAAGCCCTTTT
1 TAAACTGGGGCATAAGCCCTTTT
107911017 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 10 0.15
26 55 0.85
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
TAAACTGGGGCATAAGCCCTTTTCAA
Found at i:107911008 original size:52 final size:51
Alignment explanation
Indices: 107910904--107911016 Score: 181
Period size: 52 Copynumber: 2.2 Consensus size: 51
107910894 GGAATAACTC
* *
107910904 AAGCCCTTTTTGGTAAACTGGGGCAAAGCCTTTTTCAATAAACTAGGACAT
1 AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTAGGACAT
* *
107910955 AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATAAACTAGGACAT
107911007 AAGCCCTTTT
1 AAGCCCTTTT
107911017 GCACTTCCTC
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 24 0.42
52 33 0.58
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (51 bp):
AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTAGGACAT
Found at i:107911091 original size:20 final size:20
Alignment explanation
Indices: 107911066--107911141 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
107911056 TTATGAATTC
*
107911066 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
107911086 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
107911106 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
107911126 ATCATGT--ATATCATAC
1 ATCATGTGCATATCATAC
107911142 CCCCCGTATC
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 41 0.79
21 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:107911097 original size:11 final size:11
Alignment explanation
Indices: 107911066--107911121 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
107911056 TTATGAATTC
107911066 ATCATGTGCAT
1 ATCATGTGCAT
* *
107911077 TTCA--TACAT
1 ATCATGTGCAT
107911086 ATCATGTGCAT
1 ATCATGTGCAT
107911097 ATCA--TGCAT
1 ATCATGTGCAT
107911106 ATCATGTGCAT
1 ATCATGTGCAT
107911117 ATCAT
1 ATCAT
107911122 ATCAATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:107911196 original size:25 final size:25
Alignment explanation
Indices: 107911168--107911215 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
107911158 ATAATTAAAC
107911168 CCTAGGGGCAAAACAGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
*
107911193 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
107911216 CACATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:107911938 original size:27 final size:27
Alignment explanation
Indices: 107911843--107911921 Score: 124
Period size: 27 Copynumber: 2.9 Consensus size: 27
107911833 TATTCGTTAT
*
107911843 TTTACCATACAAGGG-TATTACGGTCAC
1 TTTACCATACAGGGGCT-TTACGGTCAC
*
107911870 TTTACCCTACAGGGGCTTTACGGTCAC
1 TTTACCATACAGGGGCTTTACGGTCAC
107911897 TTTACCATACAGGGGCTTTACGGTC
1 TTTACCATACAGGGGCTTTACGGTC
107911922 TTTTAACCTA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 47 0.98
28 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (27 bp):
TTTACCATACAGGGGCTTTACGGTCAC
Found at i:107912013 original size:27 final size:27
Alignment explanation
Indices: 107911980--107912253 Score: 178
Period size: 27 Copynumber: 10.1 Consensus size: 27
107911970 TTGGTAAATC
107911980 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** * *
107912007 TGTAAACCAATGGCATTTCTA-TAATTTT
1 TACAAACCAAGGGTATTTC-AGTAA-TTT
* * * *
107912035 TAGAAAGTCAAGGGTATTTCTGTAACTT
1 TACAAA-CCAAGGGTATTTCAGTAATTT
** * * **
107912063 TGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
***
107912090 TACAAATTGAGGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* * **
107912117 CACAAA-CTAGTGGTATTTTGGTAATTT
1 TACAAACCAAG-GGTATTTCAGTAATTT
* **
107912144 TACAAA-CTAGGGATATTTTGGTAATTT
1 TACAAACCAAGGG-TATTTCAGTAATTT
* *
107912171 TACAAGTCGAA-GGTATTTCAGTAATTT
1 TACAA-ACCAAGGGTATTTCAGTAATTT
* * *
107912198 TACAAATCGAGGGTATTTCAGTATTTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* **
107912225 TACAAACTAAGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
107912252 TA
1 TA
107912254 GTAAACTAAA
Statistics
Matches: 192, Mismatches: 46, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
26 5 0.03
27 157 0.82
28 16 0.08
29 14 0.07
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTCAGTAATTT
Found at i:107912168 original size:81 final size:81
Alignment explanation
Indices: 107912073--107912253 Score: 258
Period size: 81 Copynumber: 2.2 Consensus size: 81
107912063 TGTAAATCAG
* * * **
107912073 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAA-CTAGTGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTCACAAATCGAG-GGTATTTCA
107912137 GTAATTTTACAAACT-A
65 GTAATTTTACAAACTAA
* *
107912153 GGGATATTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCA
1 GGG-TATTTTGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCA
*
107912218 GTATTTTTACAAACTAA
65 GTAATTTTACAAACTAA
107912235 GGGTATTTTGGTAATTTTA
1 GGGTATTTTGGTAATTTTA
107912254 GTAAACTAAA
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
80 3 0.03
81 80 0.89
82 7 0.08
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAG
TAATTTTACAAACTAA
Found at i:107912268 original size:54 final size:53
Alignment explanation
Indices: 107911960--107912253 Score: 220
Period size: 54 Copynumber: 5.4 Consensus size: 53
107911950 TTTCATCCTA
* * * * **
107911960 TAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 TAAGGGTATTTTGGTAATTTTACAAA-CTAGGGTATTTCAGTAATTTTACAAAC
* * * * * * * *
107912014 CAATGGCATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTA-AATC
1 TAAGGGTATTT-TGGTAA-TTTTACAAA--CTAGGGTATTTCAGTAA-TTT-TACAAAC
* * *
107912071 -AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAAC
1 TAAGGGTATTTTGGTAATTTTACAAACT-AGGGTATTTCAGTAATTTTACAAAC
** *
107912124 T-AGTGGTATTTTGGTAATTTTACAAACTAGGGATATTTTGGTAATTTTACAAGTC
1 TAAG-GGTATTTTGGTAATTTTACAAACTAGGG-TATTTCAGTAATTTTACAA-AC
* ** * *
107912179 GAA-GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTATTTTTACAAAC
1 TAAGGGTATTTTGGTAATTTTACAAA-CTAGGGTATTTCAGTAATTTTACAAAC
107912232 TAAGGGTATTTTGGTAATTTTA
1 TAAGGGTATTTTGGTAATTTTA
107912254 GTAAACTAAA
Statistics
Matches: 186, Mismatches: 39, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
52 1 0.01
53 14 0.08
54 115 0.62
55 22 0.12
56 27 0.15
57 6 0.03
58 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
TAAGGGTATTTTGGTAATTTTACAAACTAGGGTATTTCAGTAATTTTACAAAC
Found at i:107914948 original size:3 final size:3
Alignment explanation
Indices: 107914940--107914978 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
107914930 CCTTCATCTC
* * *
107914940 ATT ATT ATT TTT GTT GTT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
107914979 TAGCATGAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:107916746 original size:2 final size:2
Alignment explanation
Indices: 107916739--107916769 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
107916729 TAGAGCAATT
107916739 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
107916770 TATATATCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:107932278 original size:30 final size:30
Alignment explanation
Indices: 107932238--107932297 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
107932228 GACAATGCAT
* **
107932238 AATTTGACAAAAT-ACCTATTTCTCCCCTAG
1 AATTTCACAAAATGACC-ATTTAACCCCTAG
107932268 AATTTCACAAAATGACCATTTAACCCCTAG
1 AATTTCACAAAATGACCATTTAACCCCTAG
107932298 GTCCGGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 23 0.88
31 3 0.12
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (30 bp):
AATTTCACAAAATGACCATTTAACCCCTAG
Found at i:107949318 original size:24 final size:24
Alignment explanation
Indices: 107949240--107949375 Score: 96
Period size: 24 Copynumber: 5.6 Consensus size: 24
107949230 TTTAAAGGTC
* *
107949240 CGCACACATAGTGCTCTTACTCAT-T
1 CGCACACATAGTGC-CATA-TAATCT
* * *
107949265 CGCACACATAGTTCCATGT-TTCCT
1 CGCACACATAGTGCCATATAAT-CT
* *
107949289 CACACACATAGTGCTATATAATCT
1 CGCACACATAGTGCCATATAATCT
* * *
107949313 CGCACACATAGTGCCATGTAGTTTT
1 CGCACACATAGTGCCATATA-ATCT
* ** *
107949338 TGCACACATAGTGCCGCATAACCT
1 CGCACACATAGTGCCATATAATCT
107949362 CGCACACATAGTGC
1 CGCACACATAGTGC
107949376 TGAAATTTCT
Statistics
Matches: 85, Mismatches: 22, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 51 0.60
25 32 0.38
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (24 bp):
CGCACACATAGTGCCATATAATCT
Found at i:107957125 original size:24 final size:24
Alignment explanation
Indices: 107957093--107957153 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
107957083 TCTTACTCAT
107957093 TCGCACACATAGTTCCGTGTTTCC
1 TCGCACACATAGTTCCGTGTTTCC
107957117 TCGCACACATAGTTCCGTGTTTCC
1 TCGCACACATAGTTCCGTGTTTCC
*
107957141 TCACACACATAGT
1 TCGCACACATAGT
107957154 GCTATATAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.31
Consensus pattern (24 bp):
TCGCACACATAGTTCCGTGTTTCC
Found at i:107957171 original size:24 final size:24
Alignment explanation
Indices: 107957144--107957230 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 24
107957134 TGTTTCCTCA
107957144 CACACATAGTGCTATATAATCTCG
1 CACACATAGTGCTATATAATCTCG
* * * * **
107957168 CACACATAGTGCCATGTAGTTTTTT
1 CACACATAGTGCTATATA-ATCTCG
* *
107957193 CACACATAGTGCCT-CATAACCTCG
1 CACACATAGTG-CTATATAATCTCG
107957217 CACACATAGTGCTA
1 CACACATAGTGCTA
107957231 AAATTTCTTA
Statistics
Matches: 46, Mismatches: 14, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
23 2 0.04
24 28 0.61
25 15 0.33
26 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (24 bp):
CACACATAGTGCTATATAATCTCG
Found at i:107962978 original size:27 final size:27
Alignment explanation
Indices: 107962920--107962980 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
107962910 ACCCCAAAGT
*
107962920 AGGTAAAATAACTAAAATACCCCTATA
1 AGGTAAAATAACTAAAATACCCCTAGA
* *** *
107962947 TGGTAAAATAACTATTTTACCCCTCGA
1 AGGTAAAATAACTAAAATACCCCTAGA
107962974 AGGTAAA
1 AGGTAAA
107962981 TGACCGATTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.18, G:0.11, T:0.26
Consensus pattern (27 bp):
AGGTAAAATAACTAAAATACCCCTAGA
Found at i:107963157 original size:26 final size:26
Alignment explanation
Indices: 107963128--107963198 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
107963118 TATATATTGA
* *
107963128 TACTGGCAGCTTTGCTGCGTTACTGT
1 TACTGGCAGCTTTGCTGCGCTACTAT
* * *
107963154 TACTGGCAGCGTTGCTACGCTAGTAT
1 TACTGGCAGCTTTGCTGCGCTACTAT
*
107963180 TACTGGTAGCTTTGCTGCG
1 TACTGGCAGCTTTGCTGCG
107963199 ATGTTGGTGT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.14, C:0.23, G:0.28, T:0.35
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGCTACTAT
Found at i:107967027 original size:42 final size:43
Alignment explanation
Indices: 107966973--107967065 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 43
107966963 GATTTATGTA
** * *
107966973 TAAGACCATGTCTAAGACATCGGCATCG-TATTTGATTTCGTG
1 TAAGACCATGTCTAAGACAGAGGCATCGATATTTGATTACATG
* ** *
107967015 TAAGACCCTGTCTGGGATAGAGGCATCGATATTTGATTACATG
1 TAAGACCATGTCTAAGACAGAGGCATCGATATTTGATTACATG
107967058 TAAGACCA
1 TAAGACCA
107967066 CATCCGAGAC
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
42 22 0.54
43 19 0.46
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (43 bp):
TAAGACCATGTCTAAGACAGAGGCATCGATATTTGATTACATG
Found at i:107970122 original size:12 final size:12
Alignment explanation
Indices: 107970105--107970131 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
107970095 CATAATAGAC
107970105 ATATATATTTAT
1 ATATATATTTAT
107970117 ATATATATTTAT
1 ATATATATTTAT
107970129 ATA
1 ATA
107970132 CACATAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATATATATTTAT
Found at i:107971963 original size:43 final size:42
Alignment explanation
Indices: 107971832--107971992 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 42
107971822 ACAATGTCAA
* * * * * *
107971832 TGTCCCAGACGTCGTATTACATGTAATCACATATCGATGCCAC
1 TGTCCCAGACATGGTCTTACACG-AATCACATATTGATGCCAG
* * *
107971875 TATCCCAGACAGGGTCTTACACGAATCAAATA-TGATGCC-G
1 TGTCCCAGACATGGTCTTACACGAATCACATATTGATGCCAG
* **
107971915 ATGTCCCAAACATGGTCTTACACGTTGTCACATATTGATGCCAG
1 -TGTCCCAGACATGGTCTTACACG-AATCACATATTGATGCCAG
** * *
107971959 TGTCCTGGACGTGGTCTTACACGAAAACACATAT
1 TGTCCCAGACATGGTCTTACACG-AATCACATAT
107971993 CAAAAATCCT
Statistics
Matches: 91, Mismatches: 23, Indels: 8
0.75 0.19 0.07
Matches are distributed among these distances:
41 26 0.29
42 14 0.15
43 50 0.55
44 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGAATCACATATTGATGCCAG
Found at i:107983822 original size:27 final size:25
Alignment explanation
Indices: 107983792--107983877 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 25
107983782 AATTCTCTGA
107983792 TCTGGTGGCTCTGCCACATATATATGT
1 TCTGGTGGCTCTGCCACAT-TAT-TGT
*
107983819 TCTGGTAGCTCTGCCACGATTATCTGT
1 TCTGGTGGCTCTGCCAC-ATTAT-TGT
* *
107983846 ATCTGGTGACTCTGTCACATTACTTGT
1 -TCTGGTGGCTCTGCCACATTA-TTGT
107983873 TCTGG
1 TCTGG
107983878 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.10
27 29 0.57
28 17 0.33
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (25 bp):
TCTGGTGGCTCTGCCACATTATTGT
Found at i:107991630 original size:27 final size:27
Alignment explanation
Indices: 107991592--107991681 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
107991582 AAGCGTCCTC
*
107991592 GTGGCTATGCCACAATTCTCTGATCTG
1 GTGGCTCTGCCACAATTCTCTGATCTG
* *
107991619 GTGGCTCTGCCACATATACT-TGTTCTG
1 GTGGCTCTGCCACA-ATTCTCTGATCTG
* * *
107991646 GTGGCTCTGCCACGATTATCTATATCTG
1 GTGGCTCTGCCACAATTCTCT-GATCTG
*
107991674 GTGACTCT
1 GTGGCTCT
107991682 ATCACATTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 3 0.06
27 33 0.65
28 15 0.29
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTCTCTGATCTG
Found at i:107991688 original size:55 final size:53
Alignment explanation
Indices: 107991592--107991700 Score: 121
Period size: 54 Copynumber: 2.0 Consensus size: 53
107991582 AAGCGTCCTC
* * *
107991592 GTGGCTATGCCACAATTCTCTGATCTGGTGGCTCTGCCACA-TATACTTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTAT-C-TGTTCTG
* * * *
107991646 GTGGCTCTGCCACGATTATCTATATCTGGTGACTCTATCACATTATCTGTTCTG
1 GTGGCTATGCCACAATTATCT-GATCTGGTGACTCTACCACATTATCTGTTCTG
107991700 G
1 G
107991701 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
54 26 0.57
55 17 0.37
56 3 0.07
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (53 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTTCTG
Found at i:108006560 original size:46 final size:46
Alignment explanation
Indices: 108006510--108006728 Score: 257
Period size: 46 Copynumber: 4.7 Consensus size: 46
108006500 TGGTTGAGCA
108006510 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
108006556 TCCGAACTCATTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
108006601 CATTCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
108006649 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
108006695 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
108006729 GGGGTGGGTT
Statistics
Matches: 147, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
45 3 0.02
46 102 0.69
47 25 0.17
48 3 0.02
50 5 0.03
51 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:108006676 original size:93 final size:93
Alignment explanation
Indices: 108006507--108006677 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
108006497 GGATGGTTGA
* *
108006507 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
*
108006572 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
108006600 GCATTCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
108006665 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
108006678 ACTTATGGAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:108010228 original size:21 final size:20
Alignment explanation
Indices: 108010194--108010234 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
108010184 ATAAGCATGC
*
108010194 ATTTTAATGATTGATTATAG
1 ATTTTAATGATTGATGATAG
*
108010214 ATTTTGAATGTTTGATGATAG
1 ATTTT-AATGATTGATGATAG
108010235 TTACACAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.49
Consensus pattern (20 bp):
ATTTTAATGATTGATGATAG
Found at i:108022889 original size:50 final size:50
Alignment explanation
Indices: 108022825--108022994 Score: 288
Period size: 50 Copynumber: 3.4 Consensus size: 50
108022815 CTGAGTTAAA
*
108022825 TGATCTTGTATATTCGGCCATATAGGTATGTACATATGTGATGTTATATT
1 TGATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATGTTATATT
*
108022875 TGAAT-TTGTATATTCGGCCATATAGGCATGCACATATGTGATGTTATATT
1 TG-ATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATGTTATATT
* *
108022925 TGATCTTGTATGTTCGGCCATATAGGTATGCACATATGTGATATTATATT
1 TGATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATGTTATATT
108022975 TGATCTTGTATATTCGGCCA
1 TGATCTTGTATATTCGGCCA
108022995 AATGAGTGAT
Statistics
Matches: 112, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
49 2 0.02
50 108 0.96
51 2 0.02
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (50 bp):
TGATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATGTTATATT
Found at i:108028191 original size:26 final size:26
Alignment explanation
Indices: 108028155--108028206 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
108028145 TGTTTTCTGC
*
108028155 CTTGTAGGCTCTTACTAGGGACGATA
1 CTTGTAGGCTCGTACTAGGGACGATA
*
108028181 CTTGTGGGCTCGTACTAGGGACGATA
1 CTTGTAGGCTCGTACTAGGGACGATA
108028207 TGAATGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (26 bp):
CTTGTAGGCTCGTACTAGGGACGATA
Found at i:108036644 original size:27 final size:26
Alignment explanation
Indices: 108036596--108036655 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
108036586 ACGAGACTGC
*
108036596 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
108036623 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
108036649 CAGATAT
1 CAGATAT
108036656 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:108050679 original size:23 final size:23
Alignment explanation
Indices: 108050630--108050680 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
108050620 AACATTGATA
108050630 AACTTAGTTTATCAACATATCAC
1 AACTTAGTTTATCAACATATCAC
* *
108050653 -ACTTGAGTTTAT-TACTTATCAC
1 AACTT-AGTTTATCAACATATCAC
108050675 AACTTA
1 AACTTA
108050681 CATAATTTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (23 bp):
AACTTAGTTTATCAACATATCAC
Found at i:108050942 original size:24 final size:24
Alignment explanation
Indices: 108050915--108050965 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
108050905 TACTTGGGTA
* *
108050915 ATTTGCCATTAATTTATCCTTTAC
1 ATTTGCCATCAATTCATCCTTTAC
* *
108050939 ATTTTCCGTCAATTCATCCTTTAC
1 ATTTGCCATCAATTCATCCTTTAC
108050963 ATT
1 ATT
108050966 CGTAGTGCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.49
Consensus pattern (24 bp):
ATTTGCCATCAATTCATCCTTTAC
Found at i:108051146 original size:100 final size:101
Alignment explanation
Indices: 108050959--108051197 Score: 345
Period size: 100 Copynumber: 2.4 Consensus size: 101
108050949 AATTCATCCT
* * * *
108050959 TTACATTCGTAGTGCCATAACCCAATTATGGTATTATCATCAAAAAGCCATAGCCTAGCTATGGT
1 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAAAAAGCCATAGCCCAGCTATGGT
**
108051024 CTTAAATATAAACACTGGCATGGTCCAA-CATGGTC
66 CTTAAATATAAACACTACCATGGTCCAACCATGGTC
* * * * *
108051059 TTACGTTCATAGTGCCATAAACTAATTATGGTCTTATCATCAGAATGCCATTGCCCAGCTATGGT
1 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAAAAAGCCATAGCCCAGCTATGGT
*
108051124 CTTACATATAAACACTACCATGGTCCAACCATGGTC
66 CTTAAATATAAACACTACCATGGTCCAACCATGGTC
* *
108051160 TTAAGTTCATTGTGCCATAACCCAATTATGGTCTTATC
1 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATC
108051198 TGTCAATTCA
Statistics
Matches: 122, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
100 81 0.66
101 41 0.34
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (101 bp):
TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAAAAAGCCATAGCCCAGCTATGGT
CTTAAATATAAACACTACCATGGTCCAACCATGGTC
Done.