Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 326 of 362
Found at i:108993247 original size:79 final size:79
Alignment explanation
Indices: 108993114--108993274 Score: 277
Period size: 79 Copynumber: 2.0 Consensus size: 79
108993104 GTAAATTTGA
**
108993114 ATGGTTTATAATCTTATGAAAAGGTTGATGAATATGTGACGTGTCTTATGAAATCCACTTATGTT
1 ATGGTTTATAATCTTATGAAAAGGTTGATGAATATGTGACGTGTCTTAAAAAATCCACTTATGTT
108993179 ATAAATGAACTTAT
66 ATAAATGAACTTAT
* * *
108993193 ATGGTTTATAATTTTATGAAAAGGTTTATGAATATGTGATGTGTCTTAAAAAATCCACTTATGTT
1 ATGGTTTATAATCTTATGAAAAGGTTGATGAATATGTGACGTGTCTTAAAAAATCCACTTATGTT
108993258 ATAAATGAACTTAT
66 ATAAATGAACTTAT
108993272 ATG
1 ATG
108993275 AGATGTTGAT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (79 bp):
ATGGTTTATAATCTTATGAAAAGGTTGATGAATATGTGACGTGTCTTAAAAAATCCACTTATGTT
ATAAATGAACTTAT
Found at i:108994780 original size:6 final size:6
Alignment explanation
Indices: 108994761--108994797 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
108994751 GATTCAGAGT
*
108994761 TTTGGG TTTAGG TTTGGG TTTGGG TTTGAGG TTTGGG
1 TTTGGG TTTGGG TTTGGG TTTGGG TTTG-GG TTTGGG
108994798 GTTCAAGGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.05, C:0.00, G:0.46, T:0.49
Consensus pattern (6 bp):
TTTGGG
Found at i:108994792 original size:19 final size:18
Alignment explanation
Indices: 108994761--108994797 Score: 65
Period size: 18 Copynumber: 2.0 Consensus size: 18
108994751 GATTCAGAGT
108994761 TTTGGGTTTAGGTTTGGG
1 TTTGGGTTTAGGTTTGGG
108994779 TTTGGGTTTGAGGTTTGGG
1 TTTGGGTTT-AGGTTTGGG
108994798 GTTCAAGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.05, C:0.00, G:0.46, T:0.49
Consensus pattern (18 bp):
TTTGGGTTTAGGTTTGGG
Found at i:108995946 original size:16 final size:16
Alignment explanation
Indices: 108995925--108995992 Score: 100
Period size: 16 Copynumber: 4.2 Consensus size: 16
108995915 TTTGGTTCGC
*
108995925 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
*
108995941 TGTATTGGATTAGACG
1 TGTATTGGATTAGAGG
*
108995957 TGTAGTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
108995973 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
108995989 TGTA
1 TGTA
108995993 ATAGCAAATC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.28, C:0.01, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:108996029 original size:45 final size:44
Alignment explanation
Indices: 108995973--108996063 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
108995963 GGATTAGAGG
* *
108995973 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
108996018 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
108996062 TG
1 TG
108996064 GAATAGAGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:108996249 original size:18 final size:17
Alignment explanation
Indices: 108996228--108996262 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
108996218 TTATTATTAA
*
108996228 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
108996246 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
108996263 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:108996316 original size:157 final size:157
Alignment explanation
Indices: 108996115--108996428 Score: 574
Period size: 157 Copynumber: 2.0 Consensus size: 157
108996105 TAGAATACCC
*
108996115 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * *
108996180 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAAATATTATTAAATATATTATAATTAAAA
108996245 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
* *
108996272 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAATTTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
108996337 ATATCAATAATAAATAATTTAATCATATTTAAACATAAATATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAAATATTATTAAATATATTATAATTAAAA
108996402 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
108996429 CTAATATTCT
Statistics
Matches: 151, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 151 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAAATATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:108996860 original size:13 final size:13
Alignment explanation
Indices: 108996842--108996866 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
108996832 GCCTTAACAA
108996842 GAGCAGCACTCAT
1 GAGCAGCACTCAT
108996855 GAGCAGCACTCA
1 GAGCAGCACTCA
108996867 AAACAGATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.12
Consensus pattern (13 bp):
GAGCAGCACTCAT
Found at i:109000554 original size:21 final size:22
Alignment explanation
Indices: 109000530--109000575 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
109000520 CTAGCACGGC
**
109000530 CGTG-CCCTAGGGTCACATCGG
1 CGTGACCCTAGGACCACATCGG
*
109000551 CGTGACCCTTGGACCACATCGG
1 CGTGACCCTAGGACCACATCGG
109000573 CGT
1 CGT
109000576 ATGAGCCATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.15, C:0.35, G:0.30, T:0.20
Consensus pattern (22 bp):
CGTGACCCTAGGACCACATCGG
Found at i:109021417 original size:38 final size:38
Alignment explanation
Indices: 109021366--109021444 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
109021356 CTCCACAGAG
109021366 TAAAAGAAAAACTCTAGTTTGGGACAATACCAACCCAT
1 TAAAAGAAAAACTCTAGTTTGGGACAATACCAACCCAT
109021404 TAAAAGAAAAACTCTAGTTTGGGACAATACCAACCCAT
1 TAAAAGAAAAACTCTAGTTTGGGACAATACCAACCCAT
109021442 TAA
1 TAA
109021445 GGAGTCCATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.46, C:0.20, G:0.13, T:0.22
Consensus pattern (38 bp):
TAAAAGAAAAACTCTAGTTTGGGACAATACCAACCCAT
Found at i:109023046 original size:26 final size:27
Alignment explanation
Indices: 109023008--109023058 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
109022998 CAAGATAAGA
109023008 ATGAAAAACATTTACAGT-AATTAAAT
1 ATGAAAAACATTTACAGTAAATTAAAT
* * *
109023034 ATGAAAGATATTTACATTAAATTAA
1 ATGAAAAACATTTACAGTAAATTAA
109023059 TAAACACATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (27 bp):
ATGAAAAACATTTACAGTAAATTAAAT
Found at i:109027457 original size:15 final size:14
Alignment explanation
Indices: 109027431--109027517 Score: 61
Period size: 15 Copynumber: 6.0 Consensus size: 14
109027421 TATTCTAATA
*
109027431 CTATTATTATTTAT
1 CTATTTTTATTTAT
109027445 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
* *
109027460 CTATTTGTATTTCT
1 CTATTTTTATTTAT
*
109027474 ACTATTATTATATT-T
1 -CTATTTTTAT-TTAT
109027489 CTATTTATTATGTT-T
1 CTATTT-TTAT-TTAT
* *
109027504 TTATTTCTATTTAT
1 CTATTTTTATTTAT
109027518 ATACTAATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
13 2 0.03
14 21 0.36
15 34 0.58
16 2 0.03
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:109027470 original size:14 final size:15
Alignment explanation
Indices: 109027438--109027471 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
109027428 ATACTATTAT
*
109027438 TATTTATCTAATTTT
1 TATTTATCTAATTTG
109027453 TATTTATCT-ATTTG
1 TATTTATCTAATTTG
109027467 TATTT
1 TATTT
109027472 CTACTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.68
Consensus pattern (15 bp):
TATTTATCTAATTTG
Found at i:109027509 original size:44 final size:44
Alignment explanation
Indices: 109027429--109027515 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
109027419 ACTATTCTAA
*
109027429 TACTATTATTATTTATCTAATTTTTATTTATCTATTTGTATTTC
1 TACTATTATTATTTATCTAATTTTTATTTATCTATTTCTATTTC
*
109027473 TACTATTATTATATT-TCT-ATTTATTATGTT-TTTATTTCTATTT
1 TACTATTATTAT-TTATCTAATTT-TTAT-TTATCTATTTCTATTT
109027516 ATATACTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
43 4 0.11
44 30 0.79
45 4 0.11
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (44 bp):
TACTATTATTATTTATCTAATTTTTATTTATCTATTTCTATTTC
Found at i:109027706 original size:25 final size:25
Alignment explanation
Indices: 109027646--109027707 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
109027636 TATAACGCCC
* *
109027646 ATTTC-AAATTTTTATACATTATTT
1 ATTTCAAAATTTTCATACATTATAT
* *
109027670 ACTTT-AATATTTTCATATATTATAT
1 A-TTTCAAAATTTTCATACATTATAT
109027695 ATTTCAAAATTTT
1 ATTTCAAAATTTT
109027708 TTTTACACTT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.56
Consensus pattern (25 bp):
ATTTCAAAATTTTCATACATTATAT
Found at i:109034605 original size:35 final size:35
Alignment explanation
Indices: 109034566--109034637 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
109034556 TTCACCCTAC
109034566 AAAATTTATTGTCATATGCCACTTAATGTTATATA
1 AAAATTTATTGTCATATGCCACTTAATGTTATATA
109034601 AAAATTTATTGTCATATGCCACTTAATGTTATATA
1 AAAATTTATTGTCATATGCCACTTAATGTTATATA
109034636 AA
1 AA
109034638 CTAAGCATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (35 bp):
AAAATTTATTGTCATATGCCACTTAATGTTATATA
Found at i:109038075 original size:20 final size:22
Alignment explanation
Indices: 109038036--109038075 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
109038026 TAGAAAAAAT
109038036 TATATATATTTTTATGAATAAG
1 TATATATATTTTTATGAATAAG
109038058 TATAT-TATTTTTAT-AATA
1 TATATATATTTTTATGAATA
109038076 TATAGCTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
TATATATATTTTTATGAATAAG
Found at i:109038280 original size:24 final size:23
Alignment explanation
Indices: 109038243--109038288 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
109038233 TTCTTAGAAT
109038243 TTTTTTAGAATTTA-AATAATATA
1 TTTTTTAGAATTTATAA-AATATA
*
109038266 TTTTTTATAACTTTATAAAATAT
1 TTTTTTAGAA-TTTATAAAATAT
109038289 GTAAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
24 9 0.45
25 2 0.10
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (23 bp):
TTTTTTAGAATTTATAAAATATA
Found at i:109043506 original size:26 final size:28
Alignment explanation
Indices: 109043453--109043508 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
109043443 CTTTTTTTTT
* * *
109043453 ATATTTATTATTTCTCTCATTTTAGTTC
1 ATATTGATTACTTCTCTCATTGTAGTTC
109043481 ATATTGATTACTTCTCT-ATTGT-GTTC
1 ATATTGATTACTTCTCTCATTGTAGTTC
109043507 AT
1 AT
109043509 TTTGTGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.24
27 4 0.16
28 15 0.60
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57
Consensus pattern (28 bp):
ATATTGATTACTTCTCTCATTGTAGTTC
Found at i:109045343 original size:26 final size:26
Alignment explanation
Indices: 109045307--109045358 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
109045297 ACTAGTGTAG
109045307 TAGTGTTGGTTACAACTTAATTTTCT
1 TAGTGTTGGTTACAACTTAATTTTCT
109045333 TAGTGTTGGTTACAACTTAATTTTCT
1 TAGTGTTGGTTACAACTTAATTTTCT
109045359 CAGTATATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (26 bp):
TAGTGTTGGTTACAACTTAATTTTCT
Found at i:109045989 original size:15 final size:15
Alignment explanation
Indices: 109045971--109046005 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
109045961 TAAATTTGTC
*
109045971 TAAGTTAAGTTAATT
1 TAAGTTAACTTAATT
109045986 TAAGTTAACTTAATT
1 TAAGTTAACTTAATT
109046001 TAAGT
1 TAAGT
109046006 CTCGAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.46
Consensus pattern (15 bp):
TAAGTTAACTTAATT
Found at i:109049270 original size:25 final size:25
Alignment explanation
Indices: 109049242--109049332 Score: 121
Period size: 25 Copynumber: 3.6 Consensus size: 25
109049232 AATTGCCTTC
109049242 CAGTCGAACAGTCAATCGGACATTT
1 CAGTCGAACAGTCAATCGGACATTT
* * *
109049267 CAGTCGAACAGTCATTCAGACAATT
1 CAGTCGAACAGTCAATCGGACATTT
* *
109049292 CAGTCGAACAATCAATTAGG-CATTT
1 CAGTCGAACAGTCAA-TCGGACATTT
109049317 CAGTCGAACAGTCAAT
1 CAGTCGAACAGTCAAT
109049333 ATGATGCATA
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
24 1 0.02
25 53 0.95
26 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (25 bp):
CAGTCGAACAGTCAATCGGACATTT
Found at i:109053046 original size:58 final size:58
Alignment explanation
Indices: 109052982--109053105 Score: 153
Period size: 58 Copynumber: 2.1 Consensus size: 58
109052972 ATAGAAATGG
*
109052982 TAAAAATGGAGAAATGAGAAAT-ATTTAGAAATGATTAT-GATTTTCTCCAAAATGAAAA
1 TAAAAATGGAGAAATG-G-AATCATTTAGAAATGAATATGGATTTTCTCCAAAATGAAAA
* * * * *
109053040 TAAAAATGGAGAAATGGAATCATTTGGAAATGAATGTGGTTTTTTTCTAAAATGAAAA
1 TAAAAATGGAGAAATGGAATCATTTAGAAATGAATATGGATTTTCTCCAAAATGAAAA
*
109053098 TGAAAATG
1 TAAAAATG
109053106 ACTTGAAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
56 3 0.05
57 14 0.25
58 40 0.70
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.31
Consensus pattern (58 bp):
TAAAAATGGAGAAATGGAATCATTTAGAAATGAATATGGATTTTCTCCAAAATGAAAA
Found at i:109053933 original size:22 final size:22
Alignment explanation
Indices: 109053908--109053953 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
109053898 CCAGGTCATA
109053908 TGAGTTAAACCATCCACTATAG
1 TGAGTTAAACCATCCACTATAG
109053930 TGAGTTAAACCATCCACTATAG
1 TGAGTTAAACCATCCACTATAG
109053952 TG
1 TG
109053954 GATATAGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (22 bp):
TGAGTTAAACCATCCACTATAG
Found at i:109057140 original size:25 final size:26
Alignment explanation
Indices: 109057094--109057147 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
109057084 ATCAATTAAA
* *
109057094 ATTTATTATTAAATATTTAATCCAAAT
1 ATTTATTAATAAATA-TAAATCCAAAT
*
109057121 ATTTATTAATAAATA-AAATCTAAAT
1 ATTTATTAATAAATATAAATCCAAAT
109057146 AT
1 AT
109057148 ATGAATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.42
27 14 0.58
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTTATTAATAAATATAAATCCAAAT
Found at i:109057921 original size:36 final size:35
Alignment explanation
Indices: 109057881--109057975 Score: 113
Period size: 36 Copynumber: 2.7 Consensus size: 35
109057871 TGGTTCAATT
*
109057881 TTAAACATTTTAAAAATTAAAATATAGAAAAAAATA
1 TTAAA-ATTTTAAAAATTAAAAAATAGAAAAAAATA
* * *
109057917 TTAAAAGTATAAGACATTAAAAAATAGAAAAAAATA
1 TTAAAATTTTAA-AAATTAAAAAATAGAAAAAAATA
109057953 -TAAAATTTCTAAAAA-TAAAAAAT
1 TTAAAATTT-TAAAAATTAAAAAAT
109057976 CACTAAAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
34 8 0.16
35 13 0.26
36 29 0.58
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.27
Consensus pattern (35 bp):
TTAAAATTTTAAAAATTAAAAAATAGAAAAAAATA
Found at i:109057981 original size:17 final size:17
Alignment explanation
Indices: 109057946--109057987 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
109057936 AAAAATAGAA
* **
109057946 AAAAATATAAAATTTCT
1 AAAAATAAAAAATCACT
109057963 AAAAATAAAAAATCACT
1 AAAAATAAAAAATCACT
109057980 -AAAATAAA
1 AAAAATAAA
109057988 GAAAATCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAATAAAAAATCACT
Found at i:109065693 original size:58 final size:58
Alignment explanation
Indices: 109065629--109065745 Score: 207
Period size: 58 Copynumber: 2.0 Consensus size: 58
109065619 CCAAAAATGC
109065629 ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
1 ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
* * *
109065687 ATTAAGTATAAGGCTAAAACATGTTATTTTTAGCGCTTATCAATGCATTTGAAAACAT
1 ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
109065745 A
1 A
109065746 CACCCAAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (58 bp):
ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
Found at i:109068190 original size:54 final size:54
Alignment explanation
Indices: 109068103--109068224 Score: 147
Period size: 54 Copynumber: 2.3 Consensus size: 54
109068093 GTATTTCAAG
* ** * *
109068103 TCAGTGAGTTATACGGCCTAACACATGGCCTAGCACACGGG-GTTGTGTGGTAAC
1 TCAGTGAGTTACACGGCCTAACACAAAGCCTAGCACACGGGTG-AGTGTGGCAAC
* * *
109068157 TCAGGGAGTTACATGGCCTAGCACAAAGCCTAGCACACGGGTGAGTGTGGCAAC
1 TCAGTGAGTTACACGGCCTAACACAAAGCCTAGCACACGGGTGAGTGTGGCAAC
*
109068211 TCAATGAGTTACAC
1 TCAGTGAGTTACAC
109068225 AGGTGAGGGC
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 55 0.98
55 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (54 bp):
TCAGTGAGTTACACGGCCTAACACAAAGCCTAGCACACGGGTGAGTGTGGCAAC
Found at i:109071155 original size:31 final size:29
Alignment explanation
Indices: 109071117--109071195 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 29
109071107 GGGATGAGCC
109071117 CACGGGCGTGTGAGTCCAC-ATGGTCCACCTA
1 CACGGGCGTGT--GTCC-CTATGGTCCACCTA
*
109071148 CACGGGCGTGTTTCCCTTTATGGTCCACCTA
1 CACGGGCGTGTGTCCC--TATGGTCCACCTA
*
109071179 CACGGGCGTGTTTCCCT
1 CACGGGCGTGTGTCCCT
109071196 TTATGTTAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
28 1 0.02
29 4 0.09
31 39 0.89
ACGTcount: A:0.14, C:0.33, G:0.27, T:0.27
Consensus pattern (29 bp):
CACGGGCGTGTGTCCCTATGGTCCACCTA
Found at i:109071196 original size:31 final size:31
Alignment explanation
Indices: 109071136--109071200 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
109071126 GTGAGTCCAC
109071136 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
1 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
109071167 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
1 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
109071198 ATG
1 ATG
109071201 TTAAGGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.14, C:0.31, G:0.23, T:0.32
Consensus pattern (31 bp):
ATGGTCCACCTACACGGGCGTGTTTCCCTTT
Found at i:109081100 original size:24 final size:24
Alignment explanation
Indices: 109081040--109081120 Score: 110
Period size: 23 Copynumber: 3.4 Consensus size: 24
109081030 TTCTAGTTAC
*
109081040 ATGGCTCTTTGTGAGCTTCCTGAT
1 ATGGCTCTTTGTGAGCTTCCCGAT
109081064 A-GGCTCTTTGTGAGCTTCCCGAT
1 ATGGCTCTTTGTGAGCTTCCCGAT
* *
109081087 ATGGTTCTTTGTGAACTTCCCGATT
1 ATGGCTCTTTGTGAGCTTCCCGA-T
*
109081112 ATGACTCTT
1 ATGGCTCTT
109081121 ATGAGTTTCC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 22 0.44
24 20 0.40
25 8 0.16
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.41
Consensus pattern (24 bp):
ATGGCTCTTTGTGAGCTTCCCGAT
Found at i:109088746 original size:46 final size:46
Alignment explanation
Indices: 109088676--109089086 Score: 385
Period size: 46 Copynumber: 9.0 Consensus size: 46
109088666 GCTTTCTGAA
* * *
109088676 ATGAAATGTGCAAGAACATGGTTGAAAGATACCATGGGAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
109088722 ATTAAATGTGTAAGACAATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
109088768 ATGAAATGCGTAAGACCATGGTTGAAAGATGCCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
109088814 ATAAAATGTTTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
****
109088860 ATGAAAAAAATAAGACCATGGTTGAAAGATACCATGGCAACATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** * ** * *
109088905 CGGGAATGAATAAGACCACGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * ** * *
109088951 ATGAAATGAACAAGGCCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *** * *
109088997 GTGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
109089043 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
109089087 TCAAAGATAA
Statistics
Matches: 310, Mismatches: 53, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
45 37 0.12
46 273 0.88
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:109089014 original size:183 final size:184
Alignment explanation
Indices: 109088687--109089086 Score: 448
Period size: 183 Copynumber: 2.2 Consensus size: 184
109088677 TGAAATGTGC
* * ** ** *
109088687 AAGAACATGGTTGAAAGATACCATGGGAACATGATATTAAATGTGTAAGACAATGGTTGAAAGAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATAGGAAATGAATAAGACAACGGTTGAAAGAC
* * *** *
109088752 ACCATGGCAACATGATATGAAATGCGTAAGACCATGGTTGAAAGATGCCATGGCAACAGGATATA
66 ACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
*** *
109088817 AAATGTTTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAA-AAAT
131 AAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGACA-GAAAATAAAT
* * * *
109088871 AAGACCATGGTTGAAAGATACCATGGCAACATGA-CGGGAATGAATAAGACCACGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATAGGAAATGAATAAGACAACGGTTGAAAGAC
** * * *
109088935 ACCATGGCAATGTAACATGAAATGAACAAGGCCATGGTTGAAAGATACCATGGCAA-TGTA-ACG
66 ACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACAGGATA--
* * *
109088998 TGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGAGT
129 TAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATAAAT
* * * *
109089054 AAGACCATAGTTGAAAGACACTATGGCATCATG
1 AAGACCATGGTTGAAAGATACCATGGCAACATG
109089087 TCAAAGATAA
Statistics
Matches: 180, Mismatches: 33, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
181 1 0.01
182 7 0.04
183 140 0.78
184 32 0.18
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (184 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGATAGGAAATGAATAAGACAACGGTTGAAAGAC
ACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
AAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATAAAT
Found at i:109090153 original size:212 final size:212
Alignment explanation
Indices: 109089784--109090207 Score: 713
Period size: 212 Copynumber: 2.0 Consensus size: 212
109089774 ACTTATCTAT
* *
109089784 CGATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACTTGTGACCGCATAACAGCCGCAG
1 CGATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACCTGTGACCACATAACAGCCGCAG
*
109089849 ACTGGGACCTTTACATACACTTCAACTCGTGACTGTATAAAGCACCATCACCCAGAAACCTGACT
66 ACTGGGACCTTTACATACACTTCAACTCGTGACCGTATAAAGCACCATCACCCAGAAACCTGACT
*
109089914 TCTATAGGATGAGTTTCTAAGGTAATGGACTCATCTCGACATGACATATGAAATGTGTGTGTCTC
131 TCCATAGGATGAGTTTCTAAGGTAATGGACTCATCTCGACATGACATATGAAATGTGTGTGTCTC
109089979 CGAGCGTTATCGCATCC
196 CGAGCGTTATCGCATCC
* * * *
109089996 CGATAGTGTCGCAAACACCCCCTCGTCATTGTTTTGTCCAACCTGTGACCACATAACAGCCGCCG
1 CGATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACCTGTGACCACATAACAGCCGCAG
* * *
109090061 ACTGGGACTTTTACATACACTTCAACTCGTGACCGTATAAAGCACTATCACCCAGGAACCTGACT
66 ACTGGGACCTTTACATACACTTCAACTCGTGACCGTATAAAGCACCATCACCCAGAAACCTGACT
* * *
109090126 TCCATAGGATGAGTTTCTAATGTAATGGTCTCATCTCGACATGACATATGAAATGTGTGTGTCTT
131 TCCATAGGATGAGTTTCTAAGGTAATGGACTCATCTCGACATGACATATGAAATGTGTGTGTCTC
*
109090191 CGAGCGTTATTGCATCC
196 CGAGCGTTATCGCATCC
109090208 TCGACAACTC
Statistics
Matches: 197, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
212 197 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (212 bp):
CGATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACCTGTGACCACATAACAGCCGCAG
ACTGGGACCTTTACATACACTTCAACTCGTGACCGTATAAAGCACCATCACCCAGAAACCTGACT
TCCATAGGATGAGTTTCTAAGGTAATGGACTCATCTCGACATGACATATGAAATGTGTGTGTCTC
CGAGCGTTATCGCATCC
Found at i:109090361 original size:17 final size:18
Alignment explanation
Indices: 109090326--109090363 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
109090316 ACAAAATCCT
**
109090326 AAAAACCCTAAACTTAAA
1 AAAAACCCTAAACGAAAA
109090344 AAAAACCCTAAA-GAAAA
1 AAAAACCCTAAACGAAAA
109090361 AAA
1 AAA
109090364 CGAATAAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.68, C:0.18, G:0.03, T:0.11
Consensus pattern (18 bp):
AAAAACCCTAAACGAAAA
Found at i:109091568 original size:29 final size:31
Alignment explanation
Indices: 109091525--109091585 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 31
109091515 AAATTAGGAA
109091525 TTTAGTCTTCATAC-TTGTAT-TTTTAAAAT
1 TTTAGTCTTCATACTTTGTATATTTTAAAAT
*
109091554 TTTAGTCTCTC-TACTTTTTATATTTTAAAAT
1 TTTAGTCT-TCATACTTTGTATATTTTAAAAT
109091585 T
1 T
109091586 CAGGTTTAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 11 0.39
30 7 0.25
31 10 0.36
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.57
Consensus pattern (31 bp):
TTTAGTCTTCATACTTTGTATATTTTAAAAT
Found at i:109092725 original size:17 final size:17
Alignment explanation
Indices: 109092705--109092738 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
109092695 AGGTTTAGGT
109092705 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
109092722 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
109092739 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:109100784 original size:93 final size:93
Alignment explanation
Indices: 109100677--109100847 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
109100667 GCCCCTAAGT
* *
109100677 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109100742 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
109100770 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109100835 CGAGTTCGGATGC
66 CGAGTTCGGATGC
109100848 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:109100844 original size:46 final size:46
Alignment explanation
Indices: 109100672--109100844 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
109100662 AACCCGCCCC
* * *
109100672 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
109100718 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
109100766 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
109100811 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
109100845 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:109103271 original size:15 final size:15
Alignment explanation
Indices: 109103245--109103300 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
109103235 CAAGGAAACC
109103245 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
109103260 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
109103275 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
109103290 GAATAAAGAAA
1 GAATAAAGAAA
109103301 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:109106371 original size:93 final size:93
Alignment explanation
Indices: 109106264--109106434 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
109106254 GCCCCTAAGT
* *
109106264 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109106329 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
109106357 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109106422 CGAGTTCGGATGC
66 CGAGTTCGGATGC
109106435 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:109106431 original size:46 final size:46
Alignment explanation
Indices: 109106259--109106431 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
109106249 AACCCGCCCC
* * *
109106259 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
109106305 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
109106353 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
109106398 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
109106432 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:109108891 original size:42 final size:42
Alignment explanation
Indices: 109108845--109108934 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
109108835 CAACTACTTT
* * *
109108845 GGTATATCCAATGATACACTTATATGTTAGTATATTTGTTTC
1 GGTATATCCAATGATACACTTACATGCTAGTATATTTGCTTC
* *
109108887 GGTATATTCGATGATACACTTACATGCTAGTATATTTGCTTC
1 GGTATATCCAATGATACACTTACATGCTAGTATATTTGCTTC
*
109108929 AGTATA
1 GGTATA
109108935 CCTGGTTATG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (42 bp):
GGTATATCCAATGATACACTTACATGCTAGTATATTTGCTTC
Found at i:109112694 original size:48 final size:46
Alignment explanation
Indices: 109112621--109112739 Score: 184
Period size: 48 Copynumber: 2.5 Consensus size: 46
109112611 ACCTGCCCCT
* * *
109112621 AGTGAACTCGGACTCAACTCAACGAGCTCGGGTCGTTCGCATCGATA
1 AGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATA
*
109112668 AGTTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AG-TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATA
109112715 AGTGAACTCGGACTCAACTCAACGA
1 AGTGAACTCGGACTCAACTCAACGA
109112740 TTCGATGCCT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
46 23 0.34
47 18 0.27
48 26 0.39
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATA
Found at i:109120829 original size:46 final size:46
Alignment explanation
Indices: 109120779--109120951 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
109120769 TGGTTGAGCA
109120779 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
109120825 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
109120870 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
109120918 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
109120952 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:109120935 original size:93 final size:93
Alignment explanation
Indices: 109120776--109120946 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
109120766 GGATGGTTGA
* *
109120776 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
109120841 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
109120869 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
109120934 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
109120947 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:109122253 original size:46 final size:46
Alignment explanation
Indices: 109122179--109122300 Score: 190
Period size: 46 Copynumber: 2.7 Consensus size: 46
109122169 GGGGCGTTAC
* ** * *
109122179 ATCTTTCAACTATGGTCTTATTCTTTTCATGTCACGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGT
*
109122225 ATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGT
109122271 ATCTTTCAACCATGGTCTTACACATTTCAT
1 ATCTTTCAACCATGGTCTTACACATTTCAT
109122301 TTCAGAAAAC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (46 bp):
ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGT
Found at i:109122851 original size:9 final size:9
Alignment explanation
Indices: 109122839--109122863 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
109122829 TTCATTTCCT
109122839 TCATTTTGG
1 TCATTTTGG
109122848 TCATTTTGG
1 TCATTTTGG
109122857 TCATTTT
1 TCATTTT
109122864 TACAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.16, T:0.60
Consensus pattern (9 bp):
TCATTTTGG
Found at i:109124366 original size:11 final size:11
Alignment explanation
Indices: 109124350--109124401 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
109124340 CTTTCTTTAT
109124350 ATAATAATAAA
1 ATAATAATAAA
109124361 ATAATAATAAA
1 ATAATAATAAA
** *
109124372 TTATCTTATTAAA
1 --ATAATAATAAA
*
109124385 ATATTAATAAA
1 ATAATAATAAA
109124396 ATAATA
1 ATAATA
109124402 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
11 25 0.76
13 8 0.24
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAATAATAAA
Found at i:109124417 original size:30 final size:30
Alignment explanation
Indices: 109124360--109124426 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 30
109124350 ATAATAATAA
*
109124360 AATAATAATAAATTATCTTATTAAAAT-ATT
1 AATAA-AATAAATTATCTAATTAAAATAATT
109124390 AATAAAATAATATTTATCTAATT-AAATAATT
1 AATAAAATAA-A-TTATCTAATTAAAATAATT
109124421 -ATAAAA
1 AATAAAA
109124427 CATCAAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 5 0.15
30 16 0.48
31 12 0.36
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (30 bp):
AATAAAATAAATTATCTAATTAAAATAATT
Found at i:109125501 original size:141 final size:141
Alignment explanation
Indices: 109125242--109125525 Score: 505
Period size: 141 Copynumber: 2.0 Consensus size: 141
109125232 ATAAAATCAT
109125242 CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
1 CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
* *
109125307 GTAACTTTCAAAATTACCCATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTGAA
66 GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
109125372 AGTCTCAAAAA
131 AGTCTCAAAAA
* * * * *
109125383 CACATAACAAAGTTAGAGCTTCAATTCCATTTTAATTCATCATAAATATACAGCACTCATTAATG
1 CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
109125448 GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
66 GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
109125513 AGTCTCAAAAA
131 AGTCTCAAAAA
109125524 CA
1 CA
109125526 TAAAAATTCC
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 136 1.00
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.28
Consensus pattern (141 bp):
CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
AGTCTCAAAAA
Found at i:109126466 original size:12 final size:12
Alignment explanation
Indices: 109126449--109126473 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
109126439 CAATCGATAC
109126449 TTAGCTTATAGT
1 TTAGCTTATAGT
109126461 TTAGCTTATAGT
1 TTAGCTTATAGT
109126473 T
1 T
109126474 GATAAGGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (12 bp):
TTAGCTTATAGT
Found at i:109148452 original size:42 final size:43
Alignment explanation
Indices: 109148405--109148597 Score: 143
Period size: 43 Copynumber: 4.5 Consensus size: 43
109148395 CGATGCCTCA
*
109148405 GTCCCAGACAAGGTCTTACATG-AAATCAGATACGATGCCGAT
1 GTCCCAGACAAGGTCTTACACGAAAATCAGATACGATGCCGAT
* * * * *
109148447 GTCCCAAACATGGTCTTATACGTAAATCTCA-AT-CGAGGCCTG-T
1 GTCCCAGACAAGGTCTTACACG-AAA-ATCAGATACGATGCC-GAT
* *
109148490 GTCCCAGACACGGTCTTACACGAAAAT-AGATACGATACCGAT
1 GTCCCAGACAAGGTCTTACACGAAAATCAGATACGATGCCGAT
* * * *
109148532 GTCCCAGACATGGTTTTATAC-ATAAACCTCA-AT-CGAGGCCTG-T
1 GTCCCAGACAAGGTCTTACACGA-AAA--TCAGATACGATGCC-GAT
*
109148575 GTCCCAGACACGGTCTTACACGA
1 GTCCCAGACAAGGTCTTACACGA
109148598 TGTCTCAGAC
Statistics
Matches: 118, Mismatches: 20, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
40 1 0.01
41 5 0.04
42 48 0.41
43 50 0.42
44 10 0.08
45 4 0.03
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (43 bp):
GTCCCAGACAAGGTCTTACACGAAAATCAGATACGATGCCGAT
Found at i:109148494 original size:43 final size:42
Alignment explanation
Indices: 109148446--109148592 Score: 147
Period size: 43 Copynumber: 3.5 Consensus size: 42
109148436 ACGATGCCGA
* *
109148446 TGTCCCAAACATGGTCTTATACGTAAATCTCAATCGAGGCCTG
1 TGTCCCAGACACGGTCTTATACGTAAA-CTCAATCGAGGCCTG
* * **
109148489 TGTCCCAGACACGGTCTTACACG-AAAAT-AGATACGATACC-G
1 TGTCCCAGACACGGTCTTATACGTAAACTCA-AT-CGAGGCCTG
* * *
109148530 ATGTCCCAGACATGGTTTTATACATAAACCTCAATCGAGGCCTG
1 -TGTCCCAGACACGGTCTTATACGTAAA-CTCAATCGAGGCCTG
109148574 TGTCCCAGACACGGTCTTA
1 TGTCCCAGACACGGTCTTA
109148593 CACGATGTCT
Statistics
Matches: 82, Mismatches: 15, Indels: 14
0.74 0.14 0.13
Matches are distributed among these distances:
40 1 0.01
41 4 0.05
42 27 0.33
43 45 0.55
44 4 0.05
45 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTATACGTAAACTCAATCGAGGCCTG
Found at i:109148497 original size:85 final size:85
Alignment explanation
Indices: 109148405--109148597 Score: 307
Period size: 85 Copynumber: 2.3 Consensus size: 85
109148395 CGATGCCTCA
* * * *
109148405 GTCCCAGACAAGGTCTTACATG-AAATCAGATACGATGCCGATGTCCCAAACATGGTCTTATACG
1 GTCCCAGACACGGTCTTACACGAAAAT-AGATACGATACCGATGTCCCAAACATGGTCTTATACA
*
109148469 TAAATCTCAATCGAGGCCTGT
65 TAAACCTCAATCGAGGCCTGT
* *
109148490 GTCCCAGACACGGTCTTACACGAAAATAGATACGATACCGATGTCCCAGACATGGTTTTATACAT
1 GTCCCAGACACGGTCTTACACGAAAATAGATACGATACCGATGTCCCAAACATGGTCTTATACAT
109148555 AAACCTCAATCGAGGCCTGT
66 AAACCTCAATCGAGGCCTGT
109148575 GTCCCAGACACGGTCTTACACGA
1 GTCCCAGACACGGTCTTACACGA
109148598 TGTCTCAGAC
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
85 96 0.96
86 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (85 bp):
GTCCCAGACACGGTCTTACACGAAAATAGATACGATACCGATGTCCCAAACATGGTCTTATACAT
AAACCTCAATCGAGGCCTGT
Found at i:109153240 original size:2 final size:2
Alignment explanation
Indices: 109153233--109153264 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
109153223 ATAATAATAC
*
109153233 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
109153265 ATAGAAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:109153618 original size:3 final size:3
Alignment explanation
Indices: 109153605--109153687 Score: 50
Period size: 3 Copynumber: 27.3 Consensus size: 3
109153595 GAGGGTATAT
*
109153605 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATGC ATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -AT-A AT-A -ATA ATA
* *
109153649 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
109153688 AAAAAATAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
2 9 0.14
3 45 0.70
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:109153629 original size:12 final size:12
Alignment explanation
Indices: 109153605--109153688 Score: 66
Period size: 12 Copynumber: 6.8 Consensus size: 12
109153595 GAGGGTATAT
109153605 ATAATAT-AATA
1 ATAATATAAATA
109153616 ATAATATAAATA
1 ATAATATAAATA
*
109153628 ATAATATATGCATGA
1 ATAATATA--AAT-A
109153643 GA-AATA-ATAATA
1 -ATAATATA-AATA
109153655 ATAATATAAATA
1 ATAATATAAATA
* *
109153667 ATAGTAAAAATA
1 ATAATATAAATA
*
109153679 ATAAAATAAA
1 ATAATATAAA
109153689 AAAAATAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 13
0.73 0.10 0.16
Matches are distributed among these distances:
11 8 0.14
12 38 0.66
13 3 0.05
14 3 0.05
15 5 0.09
16 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:109153631 original size:18 final size:18
Alignment explanation
Indices: 109153601--109153683 Score: 78
Period size: 18 Copynumber: 4.4 Consensus size: 18
109153591 TGGAGAGGGT
109153601 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
*
109153619 ATATAAATAATAATATATGC
1 ATATAAATAATAATA-AT-A
*
109153639 ATGAGAAATAATAATAATA
1 AT-ATAAATAATAATAATA
* *
109153658 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
109153676 ATAATAAA
1 AT-ATAAA
109153684 ATAAAAAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
17 3 0.06
18 26 0.48
19 9 0.17
20 4 0.07
21 12 0.22
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:109154728 original size:12 final size:12
Alignment explanation
Indices: 109154704--109154780 Score: 63
Period size: 12 Copynumber: 6.6 Consensus size: 12
109154694 GAGAGGGCAT
109154704 ATATAATATAATA
1 ATATAA-ATAATA
109154717 ATATAAATAATA
1 ATATAAATAATA
109154729 ATAT--ATACAT-
1 ATATAAATA-ATA
* *
109154739 -GAGAAATAATA
1 ATATAAATAATA
109154750 ATATAAATAATA
1 ATATAAATAATA
* *
109154762 GTAAAAATAATA
1 ATATAAATAATA
*
109154774 AAATAAA
1 ATATAAA
109154781 AAAATAAAAC
Statistics
Matches: 50, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
9 1 0.02
10 5 0.10
11 5 0.10
12 33 0.66
13 6 0.12
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:109155227 original size:22 final size:22
Alignment explanation
Indices: 109155198--109155264 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
109155188 GATGGTTTAG
109155198 TGGAGTGGTTTAGTAGGGTGGT
1 TGGAGTGGTTTAGTAGGGTGGT
* *
109155220 TGGGGTGGTTTAGTGGGGTGGT
1 TGGAGTGGTTTAGTAGGGTGGT
*
109155242 TGGAGTGGTTTAGTAGAGTGGT
1 TGGAGTGGTTTAGTAGGGTGGT
109155264 T
1 T
109155265 TAGTGGGGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.12, C:0.00, G:0.51, T:0.37
Consensus pattern (22 bp):
TGGAGTGGTTTAGTAGGGTGGT
Found at i:109155393 original size:15 final size:16
Alignment explanation
Indices: 109155375--109155404 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
109155365 GGTTTTGGGC
109155375 TGTTGGG-TTTTTAGA
1 TGTTGGGCTTTTTAGA
109155390 TGTTGGGCTTTTTAG
1 TGTTGGGCTTTTTAG
109155405 CCCGGGCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.10, C:0.03, G:0.33, T:0.53
Consensus pattern (16 bp):
TGTTGGGCTTTTTAGA
Found at i:109155691 original size:44 final size:45
Alignment explanation
Indices: 109155597--109155704 Score: 155
Period size: 44 Copynumber: 2.4 Consensus size: 45
109155587 TGATATTTGC
*
109155597 TATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATATGT
1 TATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATACGT
* * *
109155642 CATCTTTGATCTGCTCTCTGT-TAATACAGAGACGCCAAATCCGT
1 TATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATACGT
* *
109155686 TATCTTCGATCTGTTCCCT
1 TATCTTTGATCTGCTCCCT
109155705 ATAAGCACAG
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 36 0.65
45 19 0.35
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (45 bp):
TATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATACGT
Found at i:109155723 original size:44 final size:44
Alignment explanation
Indices: 109155675--109157280 Score: 1293
Period size: 44 Copynumber: 36.5 Consensus size: 44
109155665 ATACAGAGAC
* *
109155675 GCCAAATCCGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
* * * *
109155719 GCCAAATCTACTATTTTC-AACTTGTTCCCTATAAACACA-GGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
** * * * *
109155762 GCC--ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCGATCT-GTTCCCTATAAGCACAGGGAT
* * *
109155806 GTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGAAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
* * *
109155850 GTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
* * * *
109155894 ACCAAATCTGCTATTTTC-AACTTGCTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
** * * *
109155938 GCC--ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* * *
109155982 GTCAGATCTGCTATCTTCGATCTGTTTCCTATAAGCACA-GGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
* * * *
109156025 GCCAAATCTGCTGTTTTC-AACTTGTTCCCTATAAGCATAGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
** * * *
109156069 GCC--ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* * *
109156113 GTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
* * *
109156157 GTCAAATCTGCTATTTTC-AACTTGTTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
** * * *
109156201 GCC--ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* * * * *
109156245 GTCAGATATGCTATCTTCAATCTGTTCCCTATAAACACAGGGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
* * *
109156289 GCCAAATCTGCGATCTTC-AACTTGTTCCTTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
* ** * * * *
109156333 ACC--ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAAC
1 GCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* * *
109156377 GTCAGATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
* * * *
109156421 GCCAAATCTGCTGTTTTC-AACTTGTTCCCTATAAGCATAGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
** * * *
109156465 GCC--ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* *
109156509 GTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
*
109156553 GCCAAATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
** * ** * *
109156597 GCC--ATGCTGAAATCTTTGATCTGCTTCATTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* *
109156641 GTCAAATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
* * * *
109156685 GCCAAATCTGCTGTTTTC-AACTTGTTCCCTATAAGCATAGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
** * * *
109156729 GCC--ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* * *
109156773 GTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCATAGGGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
** *
109156817 GCCAAATCTGCTAT-TTTTAACTTGTTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
** * * * *
109156861 GCC--ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCATAGGAAT
1 GCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* * *
109156905 GTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACGGGGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
* * * * * *
109156949 GTCAAATCTGCTGTTTTC-AACTTGTTCCATATAAGCACGGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
* * * *
109156993 GCCAAATCTGCTGTTTTC-AACTTATTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
** * * * *
109157037 GCC--ATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* * ** *
109157081 GTCAGATCTATTATCTTCGATCTATTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
* * * *
109157125 GCCAAATCTACTGTTTTC-AACTTGTTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGAT
* * ** * * *
109157169 ACCATA-CTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAAT
1 GCCAAATCTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
** * ** * *
109157213 GTTAGATCCACTATCTTTGATCTGTTCCCTATAAACACAGGGAT
1 GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
*
109157257 GCCAAATCTGCAATCTTCGATCTG
1 GCCAAATCTGCTATCTTCGATCTG
109157281 CTCTCCGCCG
Statistics
Matches: 1228, Mismatches: 268, Indels: 132
0.75 0.16 0.08
Matches are distributed among these distances:
41 2 0.00
42 28 0.02
43 164 0.13
44 861 0.70
45 153 0.12
46 20 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
Found at i:109157029 original size:132 final size:132
Alignment explanation
Indices: 109155818--109156996 Score: 2020
Period size: 132 Copynumber: 8.9 Consensus size: 132
109155808 CAGATCTGCT
* * *
109155818 ATCTTCGATCTG-TTCCCTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
109155882 AAGCACAGGGATACCAAATCTGCTATTTTCAACTTGCTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
109155947 AA
131 AA
*
109155949 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTTCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
109156014 AAGCACA-GGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
109156078 AA
131 AA
109156080 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
109156145 AAGCACAGAGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
109156210 AA
131 AA
* *
109156212 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATATGCTATCTTCAATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* * * * *
109156277 AAACACAGGGATGCCAAATCTGCGATCTTCAACTTGTTCCTTATAAGCACAGGGATACCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
109156342 AA
131 AA
* *
109156344 ATCTTCGATCTGCTTCACTGTAAGCACAGGAACGTCAGATCTGCTATCTTCAATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
109156409 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
109156474 AA
131 AA
109156476 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
*
109156541 AAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
109156606 AA
131 AA
* * * *
109156608 ATCTTTGATCTGCTTCATTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
109156673 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
109156738 AA
131 AA
109156740 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
109156805 AAGCATAGGGATGCCAAATCTGCTATTTTTAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
109156870 AA
131 AA
*
109156872 ATCTTCGATCTGCTTCACTGTAAGCATAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* * * * *
109156937 AAGCACGGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCATATAAGCACGGGGATGCCA
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
109156997 AATCTGCTGT
Statistics
Matches: 987, Mismatches: 59, Indels: 3
0.94 0.06 0.00
Matches are distributed among these distances:
131 138 0.14
132 849 0.86
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AA
Found at i:109157074 original size:396 final size:394
Alignment explanation
Indices: 109155825--109157128 Score: 1936
Period size: 396 Copynumber: 3.3 Consensus size: 394
109155815 GCTATCTTCG
* * *
109155825 ATCTG-TTCCCTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACA
1 ATCTGCTTCACTATAAGCACAGGAATGCCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCACA
* * *
109155889 GGGATACCAAATCTGCTATTTTCAACTTGCTCCCTATAAGCACAGGGATGCCATGCTGAAATCTT
65 GGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTT
*
109155954 CGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTTCCTATAAGCA
130 CGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCA
109156019 CA-GGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATC
195 CAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATC
109156083 TTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAG
260 TTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAG
*
109156148 CACAGAGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAA
325 CACAGGGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAA
*
109156213 TCTTC
390 TTTTC
* * * * *
109156218 GATCTGCTTCACTGTAAGCACAGGAATGTCAGATATGCTATCTTCAATCTGTTCCCTATAAACAC
1 -ATCTGCTTCACTATAAGCACAGGAATGCCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCAC
* * *
109156283 AGGGATGCCAAATCTGC-GATCTTCAACTTGTTCCTTATAAGCACAGGGATACCATGCTGAAATC
64 AGGGATGCCAAATCTGCTG-TTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATC
* *
109156347 TTCGATCTGCTTCACTGTAAGCACAGGAACGTCAGATCTGCTATCTTCAATCTGTTCCCTATAAG
128 TTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAG
109156412 CACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAA
193 CACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAA
109156477 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
258 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
* *
109156542 AGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
323 AGCACAGGGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
*
109156607 AATCTTTG
388 AAT-TTTC
* * * * *
109156615 ATCTGCTTCATTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGTTCCCTATAAGCACA
1 ATCTGCTTCACTATAAGCACAGGAATGCCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCACA
*
109156680 GGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTT
65 GGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTT
109156745 CGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCA
130 CGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCA
* * * *
109156810 TAGGGATGCCAAATCTGCTATTTTTAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATC
195 CAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATC
*
109156875 TTCGATCTGCTTCACTGTAAGCATAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAG
260 TTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAG
* * * * *
109156940 CACGGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCATATAAGCACGGGGATGCCAAAT-CTGC
325 CACAGGGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGA
**
109157004 TGTTTTC
388 AATTTTC
* ** * * ** * * *
109157011 AACTTATTCCCTATAAGCACAGGGATGCCATG-CTGAAATCTTTGATCTGCTTCACTGTAAGCAC
1 ATCTGCTTCACTATAAGCACAGGAATGCCA-GACTGCTATCTTCGATCTG-TTCCCTATAAGCAC
* * * ** * * * *
109157075 AGGAATGTCAGATCTATTATCTTCGA-TCTATTCCCTATAAGCACAGGGATGCCA
64 AGGGATGCCAAATCTGCTGTTTTCAACT-TGTTCCCTATAAGCACAGGGATGCCA
109157129 AATCTACTGT
Statistics
Matches: 828, Mismatches: 72, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
394 5 0.01
395 189 0.23
396 625 0.75
397 7 0.01
398 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (394 bp):
ATCTGCTTCACTATAAGCACAGGAATGCCAGACTGCTATCTTCGATCTGTTCCCTATAAGCACAG
GGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTC
GATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCAC
AGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCT
TCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGC
ACAGGGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAAT
TTTC
Found at i:109157653 original size:205 final size:205
Alignment explanation
Indices: 109157295--109157780 Score: 756
Period size: 205 Copynumber: 2.4 Consensus size: 205
109157285 CCGCCGCTAT
* * * **
109157295 AGAGACGCCAAATTATCTTGGATTTGCTTCAACGTAAACACGTGAAAGTGAAATCAGCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
* * *
109157360 TCGATTTGCTCCTTGTAAGCACAAGGATGGCAAACCATCTTGGATCTGCTTCAGTATAAACATTT
66 TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
109157425 GAAGGTTGGATCTGCAATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTTCT
131 GAAGGTTGGATCTGCAATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTTCT
109157490 CTGACAATAC
196 CTGACAATAC
* * * * *
109157500 AGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCACATGAAAGCCAGATCAGCTATATCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
*
109157565 TCGATTTGCTCCTTGTAAGCACAATGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
66 TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
* * * * * * **
109157630 GAATGTTGGATCTGCTATGTGTCTGCCTTCCGTCGAAGTGGAGATGCTAGACTTTGATTTGTTCT
131 GAAGGTTGGATCTGCAATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTTCT
109157695 CTGACAATAC
196 CTGACAATAC
*
109157705 AAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
*
109157770 TCGATCTGCTC
66 TCGATTTGCTC
109157781 TCCACCTGAT
Statistics
Matches: 252, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
205 252 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (205 bp):
AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
GAAGGTTGGATCTGCAATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTTCT
CTGACAATAC
Found at i:109158049 original size:61 final size:65
Alignment explanation
Indices: 109157929--109158049 Score: 178
Period size: 61 Copynumber: 1.9 Consensus size: 65
109157919 GTATCCATGC
*
109157929 TTATGCCAAATAATTCGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATACT
1 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATACT
* * *
109157994 TTATGTCAAATAATTAGGATG-T-T-A-TGAACTGAATCAAATGCTCCTAACTAGATGTG
1 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
109158050 TTATTGTAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
61 30 0.58
62 1 0.02
63 1 0.02
64 1 0.02
65 19 0.37
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (65 bp):
TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATACT
Found at i:109162474 original size:19 final size:20
Alignment explanation
Indices: 109162450--109162496 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
109162440 AGTGAAAGTT
109162450 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
109162469 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
109162489 -AATGCAAA
1 TAATGCAAA
109162497 AAAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:109165264 original size:3 final size:3
Alignment explanation
Indices: 109165251--109165344 Score: 65
Period size: 3 Copynumber: 31.3 Consensus size: 3
109165241 GAGGGCATAT
109165251 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
109165295 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A-A ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
109165338 AAA ATA A
1 ATA ATA A
109165345 AACAAAGCTC
Statistics
Matches: 73, Mismatches: 8, Indels: 20
0.72 0.08 0.20
Matches are distributed among these distances:
2 11 0.15
3 51 0.70
4 9 0.12
5 2 0.03
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:109165275 original size:12 final size:12
Alignment explanation
Indices: 109165251--109165334 Score: 75
Period size: 12 Copynumber: 6.8 Consensus size: 12
109165241 GAGGGCATAT
109165251 ATAATAT-AATA
1 ATAATATAAATA
109165262 ATAATATAAATA
1 ATAATATAAATA
109165274 ATAATATATACATGA
1 ATAATATA-A-AT-A
109165289 GA-AATA-ATAATA
1 -ATAATATA-AATA
109165301 ATAATATAAATA
1 ATAATATAAATA
* *
109165313 ATAGTAAAAATA
1 ATAATATAAATA
*
109165325 ATAAAATAAA
1 ATAATATAAA
109165335 ATAAAAATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
11 8 0.13
12 38 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:109165295 original size:21 final size:18
Alignment explanation
Indices: 109165256--109165315 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
109165246 CATATATAAT
*
109165256 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
109165274 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
109165295 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
109165313 ATA
1 ATA
109165316 GTAAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 15 0.41
19 5 0.14
20 5 0.14
21 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:109165762 original size:22 final size:22
Alignment explanation
Indices: 109165734--109165833 Score: 85
Period size: 22 Copynumber: 4.4 Consensus size: 22
109165724 TAGGCAACTA
*
109165734 GAGTGGTTGGGATGGTTTAGTG
1 GAGTGGTTGGGGTGGTTTAGTG
* ** *
109165756 GAGTGGTT-TGGTGGGGTGGTTG
1 GAGTGGTTGGGGTGGTTTAG-TG
*
109165778 GGGTGGTTTAGTGGGGTGGTTTAGTG
1 GAGTGG--T--TGGGGTGGTTTAGTG
*
109165804 GGGTGGTTGGGGTGGTTTAGTG
1 GAGTGGTTGGGGTGGTTTAGTG
109165826 GAGTGGTT
1 GAGTGGTT
109165834 TAGTGGGGTG
Statistics
Matches: 61, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
21 6 0.10
22 37 0.61
24 2 0.03
26 9 0.15
27 7 0.11
ACGTcount: A:0.08, C:0.00, G:0.55, T:0.37
Consensus pattern (22 bp):
GAGTGGTTGGGGTGGTTTAGTG
Found at i:109165764 original size:13 final size:13
Alignment explanation
Indices: 109165741--109165846 Score: 120
Period size: 13 Copynumber: 8.8 Consensus size: 13
109165731 CTAGAGTGGT
*
109165741 TGGGATGGTTTAG
1 TGGGGTGGTTTAG
* *
109165754 TGGAGTGGTTTGG
1 TGGGGTGGTTTAG
109165767 TGGGGTGG--T--
1 TGGGGTGGTTTAG
109165776 TGGGGTGGTTTAG
1 TGGGGTGGTTTAG
109165789 TGGGGTGGTTTAG
1 TGGGGTGGTTTAG
109165802 TGGGGTGG--T--
1 TGGGGTGGTTTAG
109165811 TGGGGTGGTTTAG
1 TGGGGTGGTTTAG
*
109165824 TGGAGTGGTTTAG
1 TGGGGTGGTTTAG
109165837 TGGGGTGGTT
1 TGGGGTGGTT
109165847 GGAGTGAATA
Statistics
Matches: 79, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
9 16 0.20
11 4 0.05
13 59 0.75
ACGTcount: A:0.08, C:0.00, G:0.55, T:0.38
Consensus pattern (13 bp):
TGGGGTGGTTTAG
Found at i:109165785 original size:35 final size:35
Alignment explanation
Indices: 109165736--109165848 Score: 199
Period size: 35 Copynumber: 3.2 Consensus size: 35
109165726 GGCAACTAGA
* *
109165736 GTGGTTGGGATGGTTTAGTGGAGTGGTTTGGTGGG
1 GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTGGG
*
109165771 GTGGTTGGGGTGGTTTAGTGGGGTGGTTTAGTGGG
1 GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTGGG
109165806 GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTGGG
1 GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTGGG
109165841 GTGGTTGG
1 GTGGTTGG
109165849 AGTGAATATA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 74 1.00
ACGTcount: A:0.07, C:0.00, G:0.56, T:0.37
Consensus pattern (35 bp):
GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTGGG
Found at i:109165803 original size:48 final size:48
Alignment explanation
Indices: 109165741--109165846 Score: 133
Period size: 48 Copynumber: 2.2 Consensus size: 48
109165731 CTAGAGTGGT
* * * *
109165741 TGGGATGGTTTAGTGGAGTGGTT-TGGTGGGGTGGTTGGGGTGGTTTAG
1 TGGGGTGGTTTAGTGGAGTGGTTGGGGTGGGGTAG-TGGAGTGGTTTAG
* **
109165789 TGGGGTGGTTTAGTGGGGTGGTTGGGGTGGTTTAGTGGAGTGGTTTAG
1 TGGGGTGGTTTAGTGGAGTGGTTGGGGTGGGGTAGTGGAGTGGTTTAG
109165837 TGGGGTGGTT
1 TGGGGTGGTT
109165847 GGAGTGAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 43 0.86
49 7 0.14
ACGTcount: A:0.08, C:0.00, G:0.55, T:0.38
Consensus pattern (48 bp):
TGGGGTGGTTTAGTGGAGTGGTTGGGGTGGGGTAGTGGAGTGGTTTAG
Found at i:109165849 original size:22 final size:22
Alignment explanation
Indices: 109165754--109165852 Score: 92
Period size: 22 Copynumber: 4.3 Consensus size: 22
109165744 GATGGTTTAG
*
109165754 TGGAGTGGTTTGGTGGGGTGGT
1 TGGAGTGGTTTAGTGGGGTGGT
*
109165776 TGGGGTGGTTTAGTGGGGTGGT
1 TGGAGTGGTTTAGTGGGGTGGT
* ** *
109165798 T-TAGTGGGGTGGTTGGGGTGGTTT
1 TGGAGTGGTTTAG-TGGGGTGG--T
109165822 AGTGGAGTGGTTTAGTGGGGTGGT
1 --TGGAGTGGTTTAGTGGGGTGGT
109165846 TGGAGTG
1 TGGAGTG
109165853 AATATATTTG
Statistics
Matches: 60, Mismatches: 11, Indels: 12
0.72 0.13 0.14
Matches are distributed among these distances:
21 6 0.10
22 36 0.60
24 2 0.03
26 9 0.15
27 7 0.12
ACGTcount: A:0.07, C:0.00, G:0.57, T:0.36
Consensus pattern (22 bp):
TGGAGTGGTTTAGTGGGGTGGT
Found at i:109165969 original size:16 final size:15
Alignment explanation
Indices: 109165928--109165972 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
109165918 CTTCGAAGGT
** *
109165928 TGTTGGGTTTTGGGC
1 TGTTGGGTTTTTAGA
109165943 TGTTGGGTTTTTAGA
1 TGTTGGGTTTTTAGA
109165958 TGTTGGGCTTTTTAG
1 TGTTGGG-TTTTTAG
109165973 CCCGGGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.07, C:0.04, G:0.38, T:0.51
Consensus pattern (15 bp):
TGTTGGGTTTTTAGA
Found at i:109174641 original size:22 final size:22
Alignment explanation
Indices: 109174613--109174657 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
109174603 CCCTAGTAAC
109174613 TGAAGTTCTACTACTTTTATGA
1 TGAAGTTCTACTACTTTTATGA
*
109174635 TGAAGTTCTATTACTTTTATGA
1 TGAAGTTCTACTACTTTTATGA
109174657 T
1 T
109174658 TTAGTCCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (22 bp):
TGAAGTTCTACTACTTTTATGA
Found at i:109175998 original size:138 final size:138
Alignment explanation
Indices: 109175750--109176017 Score: 383
Period size: 138 Copynumber: 1.9 Consensus size: 138
109175740 TTGACATGAT
* * * * * *
109175750 GCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTTATGTTGCCATGGTATCTTTCAACC
1 GCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTCCAACC
** * * * **
109175815 ATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
66 ATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
109175880 GTCACGCA
131 GTCACGCA
* * *
109175888 GCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCGTGGTATCTTCCAACC
1 GCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTCCAACC
*
109175953 ATGGTCTTCCACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
66 ATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
109176018 TTCAGAGAGC
Statistics
Matches: 113, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
138 113 1.00
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (138 bp):
GCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTCCAACC
ATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
GTCACGCA
Found at i:109176015 original size:46 final size:46
Alignment explanation
Indices: 109175749--109176017 Score: 333
Period size: 46 Copynumber: 5.8 Consensus size: 46
109175739 TTTGACATGA
* * * * *
109175749 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTTATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGT
* *
109175795 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * *
109175841 TGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * ** *
109175887 AGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * * * *
109175933 TGCCGTGGTATCTTCCAACCATGGTCTTCCACATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
*
109175979 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
109176018 TTCAGAGAGC
Statistics
Matches: 193, Mismatches: 29, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
45 4 0.02
46 189 0.98
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
Found at i:109177891 original size:11 final size:11
Alignment explanation
Indices: 109177837--109177895 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
109177827 CTTTATATAC
109177837 TAATAAAATAA
1 TAATAAAATAA
* *
109177848 CAATAAAAAAA
1 TAATAAAATAA
*
109177859 TAATAAAATATCT
1 TAATAAAATA--A
* *
109177872 TATTAAAATAT
1 TAATAAAATAA
109177883 TAATAAAATAA
1 TAATAAAATAA
109177894 TA
1 TA
109177896 TTTATCTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
11 29 0.76
13 9 0.24
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:109181046 original size:18 final size:19
Alignment explanation
Indices: 109181011--109181053 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
109181001 TCCAACCAAA
*
109181011 ATTTCATTTTGAAAAGAAT
1 ATTTAATTTTGAAAAGAAT
*
109181030 TTTTAATTTTG-AAAGAAT
1 ATTTAATTTTGAAAAGAAT
109181048 ATTTAA
1 ATTTAA
109181054 CCTAACCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (19 bp):
ATTTAATTTTGAAAAGAAT
Found at i:109191347 original size:18 final size:18
Alignment explanation
Indices: 109191324--109191394 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
109191314 AATTAGGGTT
*
109191324 ATTTCGGTTTCAATTTTA
1 ATTTCGATTTCAATTTTA
** *
109191342 ATTTCGATTTTGATTTTG
1 ATTTCGATTTCAATTTTA
* **
109191360 ATTTCGATTTCTATTTCG
1 ATTTCGATTTCAATTTTA
* *
109191378 ATTTTGATTACAATTTT
1 ATTTCGATTTCAATTTT
109191395 GAAACACTCA
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.58
Consensus pattern (18 bp):
ATTTCGATTTCAATTTTA
Found at i:109191351 original size:6 final size:6
Alignment explanation
Indices: 109191342--109191386 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
109191332 TTCAATTTTA
* * * *
109191342 ATTTCG ATTTTG ATTTTG ATTTCG ATTTCT ATTTCG ATTTTG ATT
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATT
109191387 ACAATTTTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.18, C:0.09, G:0.13, T:0.60
Consensus pattern (6 bp):
ATTTCG
Found at i:109191362 original size:12 final size:12
Alignment explanation
Indices: 109191342--109191396 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
109191332 TTCAATTTTA
* *
109191342 ATTTCGATTTTG
1 ATTTTGATTTCG
109191354 ATTTTGATTTCG
1 ATTTTGATTTCG
109191366 ATTTCT-ATTTCG
1 ATTT-TGATTTCG
* *
109191378 ATTTTGATTACA
1 ATTTTGATTTCG
109191390 ATTTTGA
1 ATTTTGA
109191397 AACACTCACT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
11 1 0.03
12 35 0.95
13 1 0.03
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.56
Consensus pattern (12 bp):
ATTTTGATTTCG
Found at i:109191462 original size:42 final size:42
Alignment explanation
Indices: 109191416--109191497 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
109191406 TGATTCTGAT
*
109191416 TTAG-ATTTTGATTTCAATTTTGATTTTGATCTCGATTTAGAA
1 TTAGAATTTT-ATTTCAATTTTGATTTCGATCTCGATTTAGAA
* * *
109191458 TTAGAATTTTATTTTAATTTTGATTTCGATTTTGATTTAG
1 TTAGAATTTTATTTCAATTTTGATTTCGATCTCGATTTAG
109191498 GGTTATTTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 30 0.86
43 5 0.14
ACGTcount: A:0.26, C:0.05, G:0.13, T:0.56
Consensus pattern (42 bp):
TTAGAATTTTATTTCAATTTTGATTTCGATCTCGATTTAGAA
Found at i:109191489 original size:12 final size:12
Alignment explanation
Indices: 109191406--109191495 Score: 65
Period size: 12 Copynumber: 7.5 Consensus size: 12
109191396 AAACACTCAC
*
109191406 TGATTCTGATTT
1 TGATTTTGATTT
*
109191418 AGATTTTGATTT
1 TGATTTTGATTT
**
109191430 CAATTTTGATTT
1 TGATTTTGATTT
* *
109191442 TGATCTCGATTT
1 TGATTTTGATTT
* * *
109191454 AGAATTAGAATTT
1 TGATTTTG-ATTT
*
109191467 T-ATTTTAATTT
1 TGATTTTGATTT
*
109191478 TGATTTCGATTT
1 TGATTTTGATTT
109191490 TGATTT
1 TGATTT
109191496 AGGGTTATTT
Statistics
Matches: 58, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
11 5 0.09
12 49 0.84
13 4 0.07
ACGTcount: A:0.24, C:0.06, G:0.13, T:0.57
Consensus pattern (12 bp):
TGATTTTGATTT
Found at i:109191655 original size:48 final size:48
Alignment explanation
Indices: 109191601--109191724 Score: 185
Period size: 48 Copynumber: 2.6 Consensus size: 48
109191591 CCATGTGCAT
* * *
109191601 GATGTTTATTGTTTGTATCTGCCATTGTACGAATGCCATTATCAGACA
1 GATGTTTATTGTGTATATCTGCCATTGTACGAATGCCATTATCAAACA
* * *
109191649 GATGTTTATTGTGTATATCTGCCATTGTATGAATGCTATTATCAAACT
1 GATGTTTATTGTGTATATCTGCCATTGTACGAATGCCATTATCAAACA
*
109191697 GATGTTTATTGGGTATATCTGCCATTGT
1 GATGTTTATTGTGTATATCTGCCATTGT
109191725 TTGTATCCAA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.43
Consensus pattern (48 bp):
GATGTTTATTGTGTATATCTGCCATTGTACGAATGCCATTATCAAACA
Found at i:109193853 original size:38 final size:38
Alignment explanation
Indices: 109193809--109193935 Score: 202
Period size: 38 Copynumber: 3.4 Consensus size: 38
109193799 ATAATATGCA
*
109193809 TGTTGGTGGGGCTGGTTTTTTAGGGGTGTATGTATCAT
1 TGTTGGTGGGGCTGGTTTTTTAGGGGTGTGTGTATCAT
* **
109193847 TTTTGGTGGGGCTATTTTTTTAGGGGTGTGTGTATCAT
1 TGTTGGTGGGGCTGGTTTTTTAGGGGTGTGTGTATCAT
*
109193885 TGTTGGTGGGGCT-GTTTTTTAAGGGTGTGTGTATCAT
1 TGTTGGTGGGGCTGGTTTTTTAGGGGTGTGTGTATCAT
109193922 TGTTGGTGGGGCTG
1 TGTTGGTGGGGCTG
109193936 TTCACAATGT
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
37 35 0.43
38 46 0.57
ACGTcount: A:0.09, C:0.06, G:0.39, T:0.46
Consensus pattern (38 bp):
TGTTGGTGGGGCTGGTTTTTTAGGGGTGTGTGTATCAT
Found at i:109194594 original size:21 final size:21
Alignment explanation
Indices: 109194564--109194610 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
109194554 AAGTTGATGT
* *
109194564 CCCAACTCAGCAACAGGCTAC
1 CCCAAATCAGCAAAAGGCTAC
*
109194585 CCCAAATCAGCAAAAGGGTAC
1 CCCAAATCAGCAAAAGGCTAC
109194606 CCCAA
1 CCCAA
109194611 CTCAACAGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.38, G:0.15, T:0.09
Consensus pattern (21 bp):
CCCAAATCAGCAAAAGGCTAC
Found at i:109195116 original size:18 final size:18
Alignment explanation
Indices: 109195093--109195127 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
109195083 TTCTAACAAC
*
109195093 TGTGTGACTATTGAGAAA
1 TGTGTGACAATTGAGAAA
*
109195111 TGTGTGAGAATTGAGAA
1 TGTGTGACAATTGAGAA
109195128 TTGAGAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.31
Consensus pattern (18 bp):
TGTGTGACAATTGAGAAA
Found at i:109195923 original size:21 final size:20
Alignment explanation
Indices: 109195898--109195951 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
109195888 TCAGGCATCT
*
109195898 CTATTTTTCTTCTTCTCCTTC
1 CTATTTTTCTTCTCCTCC-TC
* *
109195919 TTATTTTTCTCCTCCTCCTC
1 CTATTTTTCTTCTCCTCCTC
*
109195939 CTCTTTTTCTTCT
1 CTATTTTTCTTCT
109195952 ACTATTTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.04, C:0.35, G:0.00, T:0.61
Consensus pattern (20 bp):
CTATTTTTCTTCTCCTCCTC
Found at i:109197833 original size:17 final size:17
Alignment explanation
Indices: 109197813--109197845 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
109197803 TCATTATAAG
*
109197813 AAAAATTAAATTAAACA
1 AAAAAATAAATTAAACA
109197830 AAAAAATAAATTAAAC
1 AAAAAATAAATTAAAC
109197846 TTATTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAAATAAATTAAACA
Found at i:109198475 original size:21 final size:21
Alignment explanation
Indices: 109198424--109198486 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
109198414 GAGGGGTCGA
*
109198424 AATTAAATTATAATTTTTATAAT
1 AATTAAA-T-TAATTTTTATAAG
*
109198447 AATAAAATGTAATTTTTA-AAG
1 AATTAAAT-TAATTTTTATAAG
109198468 AATTAAATTAATATTTTAT
1 AATTAAATTAAT-TTTTAT
109198487 TATTTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
20 4 0.12
21 14 0.41
22 10 0.29
23 6 0.18
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (21 bp):
AATTAAATTAATTTTTATAAG
Found at i:109198516 original size:30 final size:30
Alignment explanation
Indices: 109198458--109198525 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
109198448 ATAAAATGTA
* *
109198458 ATTTTTAAAGAATTAAATTAATATTTTATT
1 ATTTTTAAAGAATTAAAATAATACTTTATT
109198488 ATTTTTAAAGAATTAAAAT-ATAACTTTATT
1 ATTTTTAAAGAATTAAAATAAT-ACTTTATT
109198518 -TTTATTAA
1 ATTT-TTAA
109198526 TTTAAAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 5 0.15
30 29 0.85
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (30 bp):
ATTTTTAAAGAATTAAAATAATACTTTATT
Found at i:109208899 original size:12 final size:12
Alignment explanation
Indices: 109208882--109208906 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
109208872 AATAATTTAA
109208882 TCTTTTCTTTTT
1 TCTTTTCTTTTT
109208894 TCTTTTCTTTTT
1 TCTTTTCTTTTT
109208906 T
1 T
109208907 TTTACATTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TCTTTTCTTTTT
Found at i:109209568 original size:106 final size:105
Alignment explanation
Indices: 109209404--109209630 Score: 237
Period size: 106 Copynumber: 2.2 Consensus size: 105
109209394 ACCAGAGACA
* * * ****
109209404 AAAAAAAAATT-GGTGCTAGCTAGTAGATGGCCGGCACCAGGTACAATTTTTGGTTCCCAAGGCA
1 AAAAAAAAATTAGGTGCTAGCCAGTAGATGGCCGGCACCAAGTACAATTCTCAACTCCCAAGG--
* *
109209468 CATTTTTTTTTAAG-ACATTGATGGCCGACACTAGTATA-TTT
64 C-TTTTTTTTTAAGAACACTGATGGCCGACACCAGTATATTTT
* * *
109209509 AAAAAAAAATTAGGTGTTGGCCATGTA-ATGGCCGGCACCAAGTACAATTCTCAACTCCCAATGC
1 AAAAAAAAATTAGGTGCTAGCCA-GTAGATGGCCGGCACCAAGTACAATTCTCAACTCCCAAGGC
** * *
109209573 TTTTTTTTTTGGAACACTGATGGCCGCCACCAGTGTATTTT
65 TTTTTTTTTAAGAACACTGATGGCCGACACCAGTATATTTT
*
109209614 TAAAAAAAATTAGGTGC
1 AAAAAAAAATTAGGTGC
109209631 CGGCCACATT
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
103 10 0.10
104 21 0.21
105 29 0.29
106 37 0.37
107 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (105 bp):
AAAAAAAAATTAGGTGCTAGCCAGTAGATGGCCGGCACCAAGTACAATTCTCAACTCCCAAGGCT
TTTTTTTTAAGAACACTGATGGCCGACACCAGTATATTTT
Found at i:109214766 original size:18 final size:18
Alignment explanation
Indices: 109214726--109214772 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
109214716 AGCAGTGTCC
* *
109214726 TTTCAACTTCTTTTTTTTCA
1 TTTCAA-TT-TTTGTTTTAA
109214746 TTTCAATTTTTGTTTTAA
1 TTTCAATTTTTGTTTTAA
109214764 TTTCAATTT
1 TTTCAATTT
109214773 ATAATTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 17 0.68
19 2 0.08
20 6 0.24
ACGTcount: A:0.19, C:0.13, G:0.02, T:0.66
Consensus pattern (18 bp):
TTTCAATTTTTGTTTTAA
Found at i:109214834 original size:16 final size:16
Alignment explanation
Indices: 109214815--109214877 Score: 55
Period size: 16 Copynumber: 4.1 Consensus size: 16
109214805 TTCATAATCA
109214815 TCATTT-CATTTTATAT
1 TCATTTACATTTTAT-T
109214831 TCATTTAACATTTTATT
1 TCATTT-ACATTTTATT
109214848 TCA-TTA-A-TTTATTT
1 TCATTTACATTTTA-TT
*
109214862 TCATTTA-AATTTATT
1 TCATTTACATTTTATT
109214877 T
1 T
109214878 TTTTCCTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.10
14 6 0.14
15 8 0.19
16 12 0.29
17 4 0.10
18 8 0.19
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.62
Consensus pattern (16 bp):
TCATTTACATTTTATT
Found at i:109215055 original size:21 final size:21
Alignment explanation
Indices: 109215013--109215055 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
109215003 TATCTGGGTC
*
109215013 ATTTAAAATTTTTCATATTTT
1 ATTTAAAATTTTTCATAATTT
*
109215034 ATTTAAATTTTTTC-TCAATTT
1 ATTTAAAATTTTTCAT-AATTT
109215055 A
1 A
109215056 AACATCATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTAAAATTTTTCATAATTT
Found at i:109215264 original size:22 final size:21
Alignment explanation
Indices: 109215235--109215275 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
109215225 TTTTGTTTTC
*
109215235 ATTTCATTTCATTTTATTTGT
1 ATTTCATTTCATTTCATTTGT
109215256 ATTTCCATTTCATTTCATTT
1 ATTT-CATTTCATTTCATTT
109215276 AAATTATCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.20, C:0.15, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTTCATTTCATTTCATTTGT
Found at i:109215265 original size:6 final size:5
Alignment explanation
Indices: 109215231--109215275 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
109215221 TTTTTTTTGT
* *
109215231 TTTCA TTTCA TTTCA TTTTA TTTGTA TTTCCA TTTCA TTTCA TTT
1 TTTCA TTTCA TTTCA TTTCA TTT-CA TTT-CA TTTCA TTTCA TTT
109215276 AAATTATCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
5 27 0.75
6 9 0.25
ACGTcount: A:0.18, C:0.16, G:0.02, T:0.64
Consensus pattern (5 bp):
TTTCA
Found at i:109215269 original size:27 final size:25
Alignment explanation
Indices: 109215221--109215275 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 25
109215211 TAACATGTCC
*
109215221 TTTTTTTTGTTTTCATTTCATTTCA
1 TTTTATTTGTTTTCATTTCATTTCA
109215246 TTTTATTTGTATTTCCATTTCATTTCA
1 TTTTATTTGT-TTT-CATTTCATTTCA
109215273 TTT
1 TTT
109215276 AAATTATCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 9 0.33
26 3 0.11
27 15 0.56
ACGTcount: A:0.15, C:0.13, G:0.04, T:0.69
Consensus pattern (25 bp):
TTTTATTTGTTTTCATTTCATTTCA
Found at i:109215293 original size:20 final size:21
Alignment explanation
Indices: 109215267--109215330 Score: 76
Period size: 20 Copynumber: 3.0 Consensus size: 21
109215257 TTTCCATTTC
109215267 ATTTCATTTAAATTATCTTTT
1 ATTTCATTTAAATTATCTTTT
*
109215288 -TTTCATTTAAATTTAATTTTTTT
1 ATTTCATTTAAA-TT-A-TCTTTT
*
109215311 ATTTCTTTTAAATTATCTTT
1 ATTTCATTTAAATTATCTTT
109215331 CTTCCCATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
20 11 0.31
21 6 0.17
22 2 0.06
23 7 0.19
24 10 0.28
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.66
Consensus pattern (21 bp):
ATTTCATTTAAATTATCTTTT
Found at i:109215348 original size:27 final size:26
Alignment explanation
Indices: 109215317--109215711 Score: 149
Period size: 26 Copynumber: 16.2 Consensus size: 26
109215307 TTTTATTTCT
109215317 TTTAAATTATCTTTCTTCCCATTTTAA
1 TTTAAATTAT-TTTCTTCCCATTTTAA
*
109215344 TTT-AATT-TTTTC-T--CA-TTTCA
1 TTTAAATTATTTTCTTCCCATTTTAA
* * *
109215364 GTTAAATTATTTT-TTTCCATTTAAA
1 TTTAAATTATTTTCTTCCCATTTTAA
* *
109215389 TTT-AA-T-TTTT-TTCTCA-TTTCA
1 TTTAAATTATTTTCTTCCCATTTTAA
109215410 TTTAAATTATCTTTCTTCCCATTTTAA
1 TTTAAATTAT-TTTCTTCCCATTTTAA
* *
109215437 TTT-AA-T-TTTT-TTCTCA-TTTCA
1 TTTAAATTATTTTCTTCCCATTTTAA
* *
109215458 TTTAAATTATCTTT-TTTCCATTTCAA
1 TTTAAATTAT-TTTCTTCCCATTTTAA
* * *
109215484 TTTAATTTA-ATTC-T--CA-TTTCA
1 TTTAAATTATTTTCTTCCCATTTTAA
*
109215505 TTTAAATTATCTTTCTTTCCATTTTAA
1 TTTAAATTAT-TTTCTTCCCATTTTAA
** * * *
109215532 TTTATTTTATTCTCATT-TCATTTAAA
1 TTTAAATTATTTTC-TTCCCATTTTAA
* ** *
109215558 TTT-AATTTTTTTCTCATTTCATTTAAA
1 TTTAAATTATTTTCT--TCCCATTTTAA
* *
109215585 TTT-AATT-TTTT-TTCTC-TTTTCA
1 TTTAAATTATTTTCTTCCCATTTTAA
*
109215607 TTTAAATTATCTTTCTTTCCATTTTAA
1 TTTAAATTAT-TTTCTTCCCATTTTAA
* *
109215634 TTT-AA-T-TTTT-TTCTCA-TTTCA
1 TTTAAATTATTTTCTTCCCATTTTAA
* * *
109215655 TTTAAATTTATTTTTTTCTC-TTTTCA
1 TTTAAA-TTATTTTCTTCCCATTTTAA
* * *
109215681 GTTAAATTGTCTTTCTTTCCATTTTAA
1 TTTAAATTAT-TTTCTTCCCATTTTAA
109215708 TTTA
1 TTTA
109215712 CGTTTTTACA
Statistics
Matches: 278, Mismatches: 49, Indels: 82
0.68 0.12 0.20
Matches are distributed among these distances:
20 6 0.02
21 37 0.13
22 37 0.13
23 20 0.07
24 19 0.07
25 35 0.13
26 68 0.24
27 56 0.20
ACGTcount: A:0.24, C:0.14, G:0.01, T:0.62
Consensus pattern (26 bp):
TTTAAATTATTTTCTTCCCATTTTAA
Found at i:109215389 original size:19 final size:22
Alignment explanation
Indices: 109215270--109215652 Score: 149
Period size: 22 Copynumber: 16.3 Consensus size: 22
109215260 CCATTTCATT
109215270 TCATTTAAA-TT-ATCTTTTTT-
1 TCATTTAAATTTAAT-TTTTTTC
*
109215290 TCATTTAAATTTAATTTTTTTATT
1 TCATTTAAATTTAA-TTTTTT-TC
* *
109215314 TCTTTTAAA-TT-ATCTTTCTTC
1 TCATTTAAATTTAAT-TTTTTTC
* *
109215335 CCATTTTAATTTAA-TTTTTTC
1 TCATTTAAATTTAATTTTTTTC
* * * *
109215356 TCATTTCAGTTAAATTATTTTTT
1 TCATTTAAATTTAATT-TTTTTC
109215379 TCCATTTAAATTTAATTTTTTTC
1 T-CATTTAAATTTAATTTTTTTC
*
109215402 TCATTT-CATTTAAATTATCTTTCTTC
1 TCATTTAAATTT-AA-T-T-TTT-TTC
* *
109215428 CCATTTTAATTTAATTTTTTTC
1 TCATTTAAATTTAATTTTTTTC
* *
109215450 TCATTT-CATTTAAATTATCTTTTT
1 TCATTTAAATTT-AATT-T-TTTTC
* **
109215474 TCCATTTCAATTTAATTTAATTC
1 T-CATTTAAATTTAATTTTTTTC
* *
109215497 TCATTT-CATTTAAATTATCTTTCTT
1 TCATTTAAATTT-AATT-T-TTT-TC
*
109215522 TCCATTTTAATTT-ATTTTATTCTC
1 T-CATTTAAATTTAATTTT-TT-TC
109215546 ATTTCATTTAAATTTAATTTTTTTCTC
1 ---TCATTTAAATTTAA-TTTTTT-TC
109215573 ATTTCATTTAAATTTAATTTTTTTTC
1 ---TCATTTAAATTTAA-TTTTTTTC
** *
109215599 TC-TTTTCATTTAAATTATCTTTCTT
1 TCATTTAAATTT-AATT-T-TTT-TC
*
109215624 TCCATTTTAATTTAATTTTTTTC
1 T-CATTTAAATTTAATTTTTTTC
109215647 TCATTT
1 TCATTT
109215653 CATTTAAATT
Statistics
Matches: 285, Mismatches: 38, Indels: 78
0.71 0.09 0.19
Matches are distributed among these distances:
20 9 0.03
21 38 0.13
22 56 0.20
23 34 0.12
24 40 0.14
25 21 0.07
26 36 0.13
27 47 0.16
28 4 0.01
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.62
Consensus pattern (22 bp):
TCATTTAAATTTAATTTTTTTC
Found at i:109215400 original size:47 final size:47
Alignment explanation
Indices: 109215265--109215672 Score: 526
Period size: 47 Copynumber: 8.6 Consensus size: 47
109215255 TATTTCCATT
* *
109215265 TCATTTCATTTAAATTATCTTTTTTTCATTTAAATTTAA-TTTTTT-
1 TCATTTCATTTAAATTATCTTTTTTCCATTTTAATTTAATTTTTTTC
* *
109215310 T-ATTTCTTTTAAATTATCTTTCTTCCCATTTTAATTTAA-TTTTTTC
1 TCATTTCATTTAAATTATCTTT-TTTCCATTTTAATTTAATTTTTTTC
* *
109215356 TCATTTCAGTTAAATTAT-TTTTTTCCATTTAAATTTAATTTTTTTC
1 TCATTTCATTTAAATTATCTTTTTTCCATTTTAATTTAATTTTTTTC
*
109215402 TCATTTCATTTAAATTATCTTTCTTCCCATTTTAATTTAATTTTTTTC
1 TCATTTCATTTAAATTATCTTT-TTTCCATTTTAATTTAATTTTTTTC
* **
109215450 TCATTTCATTTAAATTATCTTTTTTCCATTTCAATTTAATTTAATTC
1 TCATTTCATTTAAATTATCTTTTTTCCATTTTAATTTAATTTTTTTC
*
109215497 TCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTT-ATTTTATTC
1 TCATTTCATTTAAATTATCTTT-TTTCCATTTTAATTTAATTTTTTTC
109215544 TCATTTCATTTAAATTTAAT-TTTTTTCTCATTTCATTTAAATTTAATTTTTTTTC
1 TCATTTCATTTAAA-TT-ATCTTTTTTC-CA--T--TTT-AATTTAA-TTTTTTTC
*
109215599 TCTTTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTC
1 TCATTTCATTTAAATTATCTTT-TTTCCATTTTAATTTAATTTTTTTC
109215647 TCATTTCATTTAAATTTAT-TTTTTTC
1 TCATTTCATTTAAA-TTATCTTTTTTC
109215673 TCTTTTCAGT
Statistics
Matches: 323, Mismatches: 20, Indels: 38
0.85 0.05 0.10
Matches are distributed among these distances:
44 19 0.06
45 36 0.11
46 28 0.09
47 90 0.28
48 90 0.28
49 13 0.04
50 4 0.01
52 4 0.01
53 7 0.02
54 8 0.02
55 24 0.07
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.62
Consensus pattern (47 bp):
TCATTTCATTTAAATTATCTTTTTTCCATTTTAATTTAATTTTTTTC
Found at i:109215451 original size:48 final size:48
Alignment explanation
Indices: 109215265--109215662 Score: 535
Period size: 48 Copynumber: 8.3 Consensus size: 48
109215255 TATTTCCATT
* *
109215265 TCATTTCATTTAAATTATCTTT-TTTTCATTTAAATTTAA-TTTTTT-
1 TCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTC
* *
109215310 T-ATTTCTTTTAAATTATCTTTCTTCCCATTTTAATTTAA-TTTTTTC
1 TCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTC
* *
109215356 TCATTTCAGTTAAATTAT-TTT-TTTCCATTTAAATTTAATTTTTTTC
1 TCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTC
*
109215402 TCATTTCATTTAAATTATCTTTCTTCCCATTTTAATTTAATTTTTTTC
1 TCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTC
* **
109215450 TCATTTCATTTAAATTATCTTT-TTTCCATTTCAATTTAATTTAATTC
1 TCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTC
*
109215497 TCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTT-ATTTTATTC
1 TCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTC
* * *
109215544 TCATTTCATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTTAATTTTTTTTC
1 TCATTTCATTTAAA-TT-A--TCTTTCT--TTCCATTTTAATTTAA-TTTTTTTC
*
109215599 TCTTTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTC
1 TCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTC
109215647 TCATTTCATTTAAATT
1 TCATTTCATTTAAATT
109215663 TATTTTTTTC
Statistics
Matches: 312, Mismatches: 26, Indels: 27
0.85 0.07 0.07
Matches are distributed among these distances:
44 19 0.06
45 36 0.12
46 28 0.09
47 82 0.26
48 84 0.27
49 15 0.05
51 12 0.04
53 13 0.04
54 3 0.01
55 20 0.06
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (48 bp):
TCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTC
Found at i:109215718 original size:74 final size:75
Alignment explanation
Indices: 109215288--109215711 Score: 415
Period size: 74 Copynumber: 5.8 Consensus size: 75
109215278 ATTATCTTTT
* * *
109215288 TTTCATTTAAATTTAA-TTTTTT-T-ATTTCTTTTAAATTATCTTTCTTCCCATTTTAATTTAA-
1 TTTCATTTAAATTTAATTTTTTTCTCTTTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAAT
109215349 TTTTTTCTCA
66 TTTTTTCTCA
* ** * *
109215359 TTTCAGTTAAA-TT-ATTTTTTTC-CATTTAAATTT-AATT-T-TTT-TCT-CA-TTTCATTTAA
1 TTTCATTTAAATTTAATTTTTTTCTC-TTTTCATTTAAATTATCTTTCTTTCCATTTTAATTT-A
*
109215415 ATTATCTTTCT--
64 ATT-TTTTTCTCA
** * * *
109215426 TCCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTT-TTTCCATTTCAATTTAAT
1 TTTCATTTAAATTTAATTTTTTTCTCTTTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAAT
**
109215490 TTAATTCTCA
66 TTTTTTCTCA
* ** * *
109215500 TTTCATTTAAA-TT-ATCTTTCTTTC-CATTTTAATTTATTTTAT-TCTCATTT-CATTTAAATT
1 TTTCATTTAAATTTAAT-TTT-TTTCTC-TTTTCATTTAAATTATCTTTC-TTTCCATTTTAATT
109215560 TAATTTTTTTCTCA
62 TAATTTTTTTCTCA
109215574 TTTCATTTAAATTTAATTTTTTTTCTCTTTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAA
1 TTTCATTTAAATTTAA-TTTTTTTCTCTTTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAA
109215639 TTTTTTTCTCA
65 TTTTTTTCTCA
* *
109215650 TTTCATTTAAATTT-ATTTTTTTCTCTTTTCAGTTAAATTGTCTTTCTTTCCATTTTAATTTA
1 TTTCATTTAAATTTAATTTTTTTCTCTTTTCATTTAAATTATCTTTCTTTCCATTTTAATTTA
109215712 CGTTTTTACA
Statistics
Matches: 286, Mismatches: 39, Indels: 53
0.76 0.10 0.14
Matches are distributed among these distances:
66 7 0.02
67 11 0.04
68 4 0.01
69 25 0.09
70 14 0.05
71 15 0.05
72 17 0.06
73 14 0.05
74 107 0.37
75 26 0.09
76 45 0.16
77 1 0.00
ACGTcount: A:0.24, C:0.13, G:0.01, T:0.62
Consensus pattern (75 bp):
TTTCATTTAAATTTAATTTTTTTCTCTTTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAAT
TTTTTTCTCA
Found at i:109216384 original size:133 final size:133
Alignment explanation
Indices: 109216141--109216411 Score: 515
Period size: 133 Copynumber: 2.0 Consensus size: 133
109216131 ATTATAGAAA
109216141 ATTCATTCCCCCACATAAGCAATATGCATTGTAACTTGTAGATCTTGTCTATGAATTGTTCAACA
1 ATTCATTCCCCCACATAAGCAATATGCATTGTAACTTGTAGATCTTGTCTATGAATTGTTCAACA
109216206 TTTAAGTTTGCTTTCGCACACGCTGCATGAACATGCGCACATGGACCAAAGAGTCTTAAATATCC
66 TTTAAGTTTGCTTTCGCACACGCTGCATGAACATGCGCACATGGACCAAAGAGTCTTAAATATCC
109216271 CGC
131 CGC
* * *
109216274 ATTCGTTCCCCCACATACGTAATATGCATTGTAACTTGTAGATCTTGTCTATGAATTGTTCAACA
1 ATTCATTCCCCCACATAAGCAATATGCATTGTAACTTGTAGATCTTGTCTATGAATTGTTCAACA
109216339 TTTAAGTTTGCTTTCGCACACGCTGCATGAACATGCGCACATGGACCAAAGAGTCTTAAATATCC
66 TTTAAGTTTGCTTTCGCACACGCTGCATGAACATGCGCACATGGACCAAAGAGTCTTAAATATCC
109216404 CGC
131 CGC
109216407 ATTCA
1 ATTCA
109216412 GATCACCTAT
Statistics
Matches: 134, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 134 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (133 bp):
ATTCATTCCCCCACATAAGCAATATGCATTGTAACTTGTAGATCTTGTCTATGAATTGTTCAACA
TTTAAGTTTGCTTTCGCACACGCTGCATGAACATGCGCACATGGACCAAAGAGTCTTAAATATCC
CGC
Found at i:109220598 original size:5 final size:5
Alignment explanation
Indices: 109220588--109220619 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
109220578 GTCCCTGTGA
109220588 AAAAT AAAAT AAAAT -AAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
109220620 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:109220608 original size:14 final size:14
Alignment explanation
Indices: 109220589--109220619 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
109220579 TCCCTGTGAA
109220589 AAATAAAATAAAAT
1 AAATAAAATAAAAT
109220603 AAATAAAATAAAAT
1 AAATAAAATAAAAT
109220617 AAA
1 AAA
109220620 GAACACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:109225051 original size:5 final size:5
Alignment explanation
Indices: 109225041--109225072 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
109225031 CAATTTGTGA
109225041 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
109225073 GAACATAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:109230074 original size:26 final size:26
Alignment explanation
Indices: 109230045--109230097 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
109230035 TTTACAGTTT
109230045 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* * *
109230071 TACCCTTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
109230097 T
1 T
109230098 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:109232202 original size:18 final size:18
Alignment explanation
Indices: 109232181--109232228 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 18
109232171 ATAAAAATAT
109232181 TTATAAATATAAAATAAA
1 TTATAAATATAAAATAAA
109232199 TTAT--AT-T-AAATAAA
1 TTATAAATATAAAATAAA
109232213 TT-TCAAATATAAAATA
1 TTAT-AAATATAAAATA
109232229 TTAATGTACC
Statistics
Matches: 25, Mismatches: 0, Indels: 10
0.71 0.00 0.29
Matches are distributed among these distances:
13 1 0.04
14 9 0.36
15 1 0.04
16 4 0.16
17 1 0.04
18 9 0.36
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
TTATAAATATAAAATAAA
Found at i:109234597 original size:13 final size:13
Alignment explanation
Indices: 109234579--109234619 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
109234569 CGGGTGAAAC
109234579 AAATTTATATAAA
1 AAATTTATATAAA
109234592 AAA-TT-TAT-AA
1 AAATTTATATAAA
*
109234602 AAATTAATATAAA
1 AAATTTATATAAA
109234615 AAATT
1 AAATT
109234620 GAAGACTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
10 5 0.21
11 4 0.17
12 5 0.21
13 10 0.42
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
AAATTTATATAAA
Found at i:109234602 original size:11 final size:12
Alignment explanation
Indices: 109234583--109234619 Score: 51
Period size: 10 Copynumber: 3.2 Consensus size: 12
109234573 TGAAACAAAT
109234583 TTATATAAAAAA
1 TTATATAAAAAA
109234595 TT-TAT-AAAAA
1 TTATATAAAAAA
109234605 TTAATATAAAAAA
1 TT-ATATAAAAAA
109234618 TT
1 TT
109234620 GAAGACTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 7 0.32
11 3 0.14
12 5 0.23
13 7 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TTATATAAAAAA
Found at i:109241145 original size:18 final size:18
Alignment explanation
Indices: 109241094--109241146 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
109241084 AATTATAAAA
109241094 AATAAAAATCAATAAAATTT
1 AATAAAAAT--ATAAAATTT
* *
109241114 -ATAAAATTATTAAATTTT
1 AATAAAAATA-TAAAATTT
109241132 AATAAAAATATAAAA
1 AATAAAAATATAAAA
109241147 AAATAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
17 1 0.04
18 11 0.41
19 15 0.56
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
AATAAAAATATAAAATTT
Done.