Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 336 of 362
Found at i:111956973 original size:16 final size:16
Alignment explanation
Indices: 111956944--111956977 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
111956934 TAATTTACTT
111956944 TTCAATTTTCAATTAA
1 TTCAATTTTCAATTAA
111956960 TTCATATTTT-AATTAA
1 TTCA-ATTTTCAATTAA
111956976 TT
1 TT
111956978 AACTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCAATTTTCAATTAA
Found at i:111959374 original size:3 final size:3
Alignment explanation
Indices: 111959366--111959401 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
111959356 TTTACACATT
111959366 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
111959402 CAAATTGCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:111959567 original size:3 final size:3
Alignment explanation
Indices: 111959559--111959585 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
111959549 ATTGTTTTGA
111959559 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
111959586 CTCGTCTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:111967674 original size:22 final size:23
Alignment explanation
Indices: 111967649--111967694 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
111967639 CAACCAAATC
111967649 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
111967671 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
111967694 A
1 A
111967695 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:111967700 original size:23 final size:23
Alignment explanation
Indices: 111967656--111967700 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
111967646 ATCAATTCAA
*
111967656 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
111967679 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
111967701 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:111970868 original size:126 final size:126
Alignment explanation
Indices: 111970638--111970946 Score: 510
Period size: 126 Copynumber: 2.5 Consensus size: 126
111970628 ATTAACTATT
* * * * *
111970638 AATTACGGAAAAAAGCTCCCATGTGGACGCTCTTTTGCTACAGTTGTATCTGAAAAAATAATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACACTTTTTTGCTACAGTAGTATCTAAAAAAATAATTTT
* * *
111970703 GAGAAGATGTTTCTAAACAAATGGTGTCAAAAATACTTCAAGAAGGATGCACTGTCAGCAA
66 GAGAAGATGTTTCTAAACAAATAGTATCAAAAACACTTCAAGAAGGATGCACTGTCAGCAA
*
111970764 AATTACGGAAAAAAGCTCCAACGTGGACACTTTTTTGCTACAGTAGTATCTAAAAAAATAATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACACTTTTTTGCTACAGTAGTATCTAAAAAAATAATTTT
*
111970829 GAGAAGATGTTTCTAAACAAATAGTATCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
66 GAGAAGATGTTTCTAAACAAATAGTATCAAAAACACTTCAAGAAGGATGCACTGTCAGCAA
* *
111970890 AATTACGGAAAAAAGCTCCCACGTGGATACTTTTTTGCTATAGTAGTATCTAAAAAA
1 AATTACGGAAAAAAGCTCCCACGTGGACACTTTTTTGCTACAGTAGTATCTAAAAAA
111970947 GCCTTAGACT
Statistics
Matches: 170, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 170 1.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (126 bp):
AATTACGGAAAAAAGCTCCCACGTGGACACTTTTTTGCTACAGTAGTATCTAAAAAAATAATTTT
GAGAAGATGTTTCTAAACAAATAGTATCAAAAACACTTCAAGAAGGATGCACTGTCAGCAA
Found at i:111974356 original size:130 final size:130
Alignment explanation
Indices: 111973989--111974365 Score: 652
Period size: 129 Copynumber: 2.9 Consensus size: 130
111973979 ACATTTATTT
* * * *
111973989 TAATAAAAATTATTGGCTAATGTAAAAGAACATTTATTGTATTAAAATTAAAAAAAGTAAAGTAC
1 TAATAAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
111974054 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAATAAATATAAAAA
66 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAATAAATATAAAAA
111974119 TAATAAAAAAT-TTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
1 TAATAAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
*
111974183 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAATTAAATATAAAAA
66 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAATAAATATAAAAA
*
111974248 TAATAAAAAAATATTGCCTAATTTAAAAGAACATTTATTTTAATAAAATT-AAAAAAGTAAAGTA
1 TAAT-AAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTA
*
111974312 CAATTAAAATATTAAAAACAACTTTTATTTTATT-ATATGAAACTATATAAAAAA
65 CAATTAAAATATTAAAAACAACTTTTATTTTATTAAT-TAAAACTATATAAAAAA
111974366 GTTTGTACAA
Statistics
Matches: 236, Mismatches: 8, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
129 120 0.51
130 80 0.34
131 36 0.15
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (130 bp):
TAATAAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
AATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAATAAATATAAAAA
Found at i:111974495 original size:21 final size:22
Alignment explanation
Indices: 111974470--111974521 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
111974460 TGGTTCAGCT
*
111974470 TCCGGCGAGGG-TTGTGGTTGC
1 TCCGGCGAGGGATTGTGGTTCC
*
111974491 TCCGGTG-GGGATTGTGGTTCC
1 TCCGGCGAGGGATTGTGGTTCC
111974512 TCCGGC-AGGG
1 TCCGGCGAGGG
111974522 GATCTGGTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.06, C:0.21, G:0.46, T:0.27
Consensus pattern (22 bp):
TCCGGCGAGGGATTGTGGTTCC
Found at i:111975426 original size:7 final size:7
Alignment explanation
Indices: 111975414--111975446 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
111975404 TTATATAGGT
111975414 AATACTA
1 AATACTA
111975421 AATACTA
1 AATACTA
111975428 AATACTA
1 AATACTA
111975435 AATACTA
1 AATACTA
111975442 AATAC
1 AATAC
111975447 GAAACGACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:111976642 original size:21 final size:22
Alignment explanation
Indices: 111976597--111976659 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 22
111976587 ACAGAGCTTT
**
111976597 TTTG-CAAAAATTAGAGAGAGC
1 TTTGACAAAAATTAGAGAGAAA
111976618 TTTGACAAAAATT-GAGAGAAA
1 TTTGACAAAAATTAGAGAGAAA
* * *
111976639 TTTGAGAGAATTTAGAGAGAA
1 TTTGACAAAAATTAGAGAGAA
111976660 TTGTGAGAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 20 0.57
22 15 0.43
ACGTcount: A:0.46, C:0.05, G:0.24, T:0.25
Consensus pattern (22 bp):
TTTGACAAAAATTAGAGAGAAA
Found at i:111976655 original size:20 final size:22
Alignment explanation
Indices: 111976627--111976668 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
111976617 CTTTGACAAA
111976627 AATTGAGAGA-AATT-TGAGAG
1 AATTGAGAGAGAATTGTGAGAG
*
111976647 AATTTAGAGAGAATTGTGAGAG
1 AATTGAGAGAGAATTGTGAGAG
111976669 GACTATTGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 4 0.21
22 6 0.32
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.26
Consensus pattern (22 bp):
AATTGAGAGAGAATTGTGAGAG
Found at i:111978904 original size:19 final size:19
Alignment explanation
Indices: 111978875--111978917 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
111978865 AATTACATCC
111978875 AATTTATATTAA-AATAAT
1 AATTTATATTAATAATAAT
*
111978893 AATTTAATATTAATAATATT
1 AATTT-ATATTAATAATAAT
111978913 AATTT
1 AATTT
111978918 CATTTCAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.23
19 7 0.32
20 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTTATATTAATAATAAT
Found at i:111980898 original size:24 final size:24
Alignment explanation
Indices: 111980853--111980906 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
111980843 TATCTTTAAC
*
111980853 TTAATATAAAAATAATAATAATAA
1 TTAATATAAAAACAATAATAATAA
* *
111980877 TTTAATAT-AAAACCATACTAATAA
1 -TTAATATAAAAACAATAATAATAA
111980901 TTAATA
1 TTAATA
111980907 ATAATAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 6 0.23
24 13 0.50
25 7 0.27
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (24 bp):
TTAATATAAAAACAATAATAATAA
Found at i:111984576 original size:22 final size:23
Alignment explanation
Indices: 111984535--111984577 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
111984525 TTCATAAAAA
111984535 AAACATCTAATATTTATTAATGG
1 AAACATCTAATATTTATTAATGG
*
111984558 AAACATCTAA-ATTTTTTAAT
1 AAACATCTAATATTTATTAAT
111984578 AAAAACAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (23 bp):
AAACATCTAATATTTATTAATGG
Found at i:111984583 original size:22 final size:23
Alignment explanation
Indices: 111984533--111984584 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
111984523 TATTCATAAA
111984533 AAAAACATCTAATATTTATTAAT
1 AAAAACATCTAATATTTATTAAT
** *
111984556 GGAAACATCTAA-ATTTTTTAAT
1 AAAAACATCTAATATTTATTAAT
111984578 AAAAACA
1 AAAAACA
111984585 AAAACAAAGG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.35
Consensus pattern (23 bp):
AAAAACATCTAATATTTATTAAT
Found at i:111985633 original size:17 final size:18
Alignment explanation
Indices: 111985605--111985645 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
111985595 CACTCTATTG
*
111985605 CTTCTCTTCTTCTGTTAT
1 CTTCTCTTCTTCTGTGAT
111985623 CTTCT-TTCTTCTGTGAT
1 CTTCTCTTCTTCTGTGAT
111985640 C-TCTCT
1 CTTCTCT
111985646 ATTTCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 13 0.62
18 5 0.24
ACGTcount: A:0.05, C:0.29, G:0.07, T:0.59
Consensus pattern (18 bp):
CTTCTCTTCTTCTGTGAT
Found at i:111993988 original size:33 final size:35
Alignment explanation
Indices: 111993951--111994047 Score: 98
Period size: 33 Copynumber: 2.8 Consensus size: 35
111993941 ATAGTTATAT
111993951 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTGCTTAA
* *
111993984 TTAAAT-TTTATAA-ATAATTAATATTTATTGCTTAA
1 TTAAATATTTAAAATATAATT--TATATATTGCTTAA
111994019 --AAATATTTAAAATATATATTTTATATATT
1 TTAAATATTTAAAATATA-A-TTTATATATT
111994048 AAAATATTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 7 0.13
35 13 0.25
36 1 0.02
37 2 0.04
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTGCTTAA
Found at i:111994245 original size:13 final size:13
Alignment explanation
Indices: 111994229--111994260 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
111994219 TTTAAACCAA
111994229 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
111994242 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
111994255 ACTTTT
1 ACTTTT
111994261 TCACATAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.34
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:111995003 original size:15 final size:15
Alignment explanation
Indices: 111994983--111995015 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
111994973 CGATGTGTAA
111994983 TTTGTGAATTTAGAT
1 TTTGTGAATTTAGAT
111994998 TTTGTGAATTTAGAT
1 TTTGTGAATTTAGAT
111995013 TTT
1 TTT
111995016 TTTCATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (15 bp):
TTTGTGAATTTAGAT
Found at i:111996725 original size:11 final size:11
Alignment explanation
Indices: 111996686--111996733 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
111996676 AAATTTTTAA
*
111996686 TTTTTTA-ACT
1 TTTTTTATAAT
*
111996696 TTCTTTATATAT
1 TTTTTTATA-AT
*
111996708 ATTTTTATAAT
1 TTTTTTATAAT
111996719 TTTTTTATAAT
1 TTTTTTATAAT
111996730 TTTT
1 TTTT
111996734 AAAAAATATA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
10 6 0.19
11 17 0.55
12 8 0.26
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTTTATAAT
Found at i:111996772 original size:20 final size:21
Alignment explanation
Indices: 111996747--111996791 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
111996737 AAATATAAAA
111996747 TTTGAAATTTTT-ATAAA-TAT
1 TTTGAAATTTTTGA-AAATTAT
111996767 TTTG-AATTTTTGAAAATTAT
1 TTTGAAATTTTTGAAAATTAT
111996787 TTTGA
1 TTTGA
111996792 TTTTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.56
Consensus pattern (21 bp):
TTTGAAATTTTTGAAAATTAT
Found at i:111996774 original size:19 final size:20
Alignment explanation
Indices: 111996747--111996796 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
111996737 AAATATAAAA
111996747 TTTGAAATTTTT-ATAAA-TAT
1 TTTG-AATTTTTGA-AAATTAT
111996767 TTTGAATTTTTGAAAATTAT
1 TTTGAATTTTTGAAAATTAT
111996787 TTTG-ATTTTT
1 TTTGAATTTTT
111996797 TTTTTTGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (20 bp):
TTTGAATTTTTGAAAATTAT
Found at i:111997764 original size:120 final size:119
Alignment explanation
Indices: 111997601--111997840 Score: 354
Period size: 120 Copynumber: 2.0 Consensus size: 119
111997591 AACTGTGTTA
* ** * *
111997601 CAAGTTATTAAAGATCTATTCTAGTTATTTTGGATGGTTCGATTTACACATGTATGGCGTCTTTA
1 CAAGCTATTAAAGATCTATTCTAACTATTTTGGATGGTTCGATTTACACATGTATAGCGTC-CTA
*
111997666 AAAGCCTCTGGATAGATACATCTACATACAACCGTCAGATAAAATTCTTCAACTG
65 AAAGCCTCTGAATAGATACATCTACATACAACCGTCAGATAAAATTCTTCAACTG
111997721 CAAGCTATTAAAGATCTATTCTAACTATTTTGGATGGTTCGATTTACACATGTATAGCGTCCTAA
1 CAAGCTATTAAAGATCTATTCTAACTATTTTGGATGGTTCGATTTACACATGTATAGCGTCCTAA
* * * * * * *
111997786 AGGTCTTTGAATAGATATATCTACATGCAACCGTTAGATGAAATTCTTCAACTG
66 AAGCCTCTGAATAGATACATCTACATACAACCGTCAGATAAAATTCTTCAACTG
111997840 C
1 C
111997841 TACACTATGC
Statistics
Matches: 107, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
119 50 0.47
120 57 0.53
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (119 bp):
CAAGCTATTAAAGATCTATTCTAACTATTTTGGATGGTTCGATTTACACATGTATAGCGTCCTAA
AAGCCTCTGAATAGATACATCTACATACAACCGTCAGATAAAATTCTTCAACTG
Found at i:112003366 original size:10 final size:10
Alignment explanation
Indices: 112003351--112003377 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
112003341 AATAATTAAG
112003351 TATATTAAAT
1 TATATTAAAT
112003361 TATATTAAAT
1 TATATTAAAT
112003371 TATATTA
1 TATATTA
112003378 TTATTATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TATATTAAAT
Found at i:112005055 original size:39 final size:39
Alignment explanation
Indices: 112004948--112005082 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
112004938 GACCTCGAGT
* * *
112004948 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
112004989 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
112005027 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
112005066 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
112005083 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:112008359 original size:49 final size:49
Alignment explanation
Indices: 112008304--112008403 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
112008294 TTTTCGTCCA
112008304 TTGCTGAGATTATCTTCTTCTTCTTTTTCTTTGCAAACCCGAATCAAAG
1 TTGCTGAGATTATCTTCTTCTTCTTTTTCTTTGCAAACCCGAATCAAAG
*
112008353 TTGCTGAGATTATCTTCTTTTTCTTTTTCTTTGCAAACCCGAATCAAAG
1 TTGCTGAGATTATCTTCTTCTTCTTTTTCTTTGCAAACCCGAATCAAAG
112008402 TT
1 TT
112008404 CATCCCCGAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.45
Consensus pattern (49 bp):
TTGCTGAGATTATCTTCTTCTTCTTTTTCTTTGCAAACCCGAATCAAAG
Found at i:112017813 original size:14 final size:15
Alignment explanation
Indices: 112017796--112017833 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
112017786 GGGGGTTTCA
*
112017796 TTTTATTTTCTTCTT
1 TTTTATTTTCTTATT
*
112017811 TTTTATTTTTTTA-T
1 TTTTATTTTCTTATT
112017825 TTTTATTTT
1 TTTTATTTT
112017834 TCCTGACTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTATTTTCTTATT
Found at i:112017834 original size:14 final size:14
Alignment explanation
Indices: 112017796--112017834 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
112017786 GGGGGTTTCA
112017796 TTTTATTTTCTTCTT
1 TTTTATTTT-TTCTT
112017811 TTTTATTTTTT-TAT
1 TTTTATTTTTTCT-T
112017825 TTTTATTTTT
1 TTTTATTTTT
112017835 CCTGACTCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.04
14 13 0.57
15 9 0.39
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTATTTTTTCTT
Found at i:112021700 original size:18 final size:18
Alignment explanation
Indices: 112021677--112021713 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
112021667 ATTGGTTGAG
112021677 TCTGCATATAATAACAGT
1 TCTGCATATAATAACAGT
112021695 TCTGCATATAATAACAGT
1 TCTGCATATAATAACAGT
112021713 T
1 T
112021714 ATCAATCCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
TCTGCATATAATAACAGT
Found at i:112033982 original size:41 final size:41
Alignment explanation
Indices: 112033936--112034017 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
112033926 CTAAAACTGA
112033936 TAGAGATAAATTTGCAATCCTCTCATCATCCTTACTAACTT
1 TAGAGATAAATTTGCAATCCTCTCATCATCCTTACTAACTT
*
112033977 TAGAGATAAATTTGCAATCCTCTCATCATCTTTACTAACTT
1 TAGAGATAAATTTGCAATCCTCTCATCATCCTTACTAACTT
112034018 CCTTTCCTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (41 bp):
TAGAGATAAATTTGCAATCCTCTCATCATCCTTACTAACTT
Found at i:112036298 original size:21 final size:22
Alignment explanation
Indices: 112036272--112036318 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
112036262 CTCTGCTCAA
*
112036272 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
112036293 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
112036315 ACTC
1 ACTC
112036319 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:112041172 original size:29 final size:29
Alignment explanation
Indices: 112041110--112041172 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
112041100 TAACTTTTTT
* *
112041110 TTTCTCCCTTTATTTTCCATTCTTTTCTA
1 TTTCTCCCTTTATTTTCCATCCTTTTCCA
*
112041139 CTTCT-CCTTCTATTTTCC-TCCTTTCTCCA
1 TTTCTCCCTT-TATTTTCCATCCTTT-TCCA
112041168 TTTCT
1 TTTCT
112041173 TTTAATGTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.08, C:0.33, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTCTCCCTTTATTTTCCATCCTTTTCCA
Found at i:112048716 original size:177 final size:177
Alignment explanation
Indices: 112048402--112049215 Score: 781
Period size: 177 Copynumber: 4.6 Consensus size: 177
112048392 GGGTGAAGTC
* * * * * *
112048402 AGATATTATCTCCCTGAAGTTACAACGGAGCAGATCGAAGATGGCGAGTCTTATCTCCATGTAT-
1 AGATCTTATCTCCCTGAAGGTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATC
** ** * * *
112048466 AGGCAATGGAGTAGATTTAAACCATTAGCCTTATCTCTCTGAGGTAGCAAGAGAGTAGGCGGAAG
66 A-GCAATGGAACAGATTTAAACCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTGGAAG
* * * * * *
112048531 ATTGAGTCTTATCTTCCTAAGGCAGCAAGGAAGCATATTGAAGATGAA
130 AATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGATGAA
* *
112048579 AGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCTATGTATC
1 AGATCTTATCTCCCTGAAGGTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATC
* *
112048644 AGCAAGGGAACAGATTTAAACCACCAGCCTAATCTCTCTGAGATAGCAAGAGAGCAGGTGGAAGA
66 AGCAATGGAACAGATTTAAACCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTGGAAGA
* *
112048709 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
131 ATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGATGAA
* * * *
112048756 AGATCTTATCTCCCTGAAGGTGCAGCGGAGTAGATCGAAAAAGGTGAATCTTATCTCTATGTATC
1 AGATCTTATCTCCCTGAAGGTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATC
* * * * * *
112048821 -GACAATGGAGA-AGATTTAAGCTC-CGAGCCTTATCTCCCTGA-AGTTGC-AGTG-GAATGGAT
66 AG-CAATGGA-ACAGATTTAAAC-CACCAGCCTTATCTCTCTGAGA-TAGCAAGAGAGCA-GG--
* **
112048880 TCG-AGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAA-CAGACTG-AGAATTG-A
124 TGGAAGA-ATGAGTCTTATCTTCCTGAGGTAGCAA-GAAAGCAGACTGAAG-A-TGAA
* * * *
112048934 ATATCTTATTTCCCT--A-GT-----GGAACAGATCGAAGATAGTGAATCTTATCTCCATGTATC
1 AGATCTTATCTCCCTGAAGGTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATC
* * * *
112048991 AGCAATGGAACAAATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 AGCAATGGAACAGATTTAAACCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTGGAAGA
* *
112049056 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGTAGACT-ACAGAT-AGA
131 ATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGA-AGATGA-A
* * * * * * *
112049103 AGATTTTATCTCCCTGAAGGTGTAGCGAAACAGATTGAAGATGGAGAAACTTATCTCCATGTATC
1 AGATCTTATCTCCCTGAAGGTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATC
* * * ** * * *
112049168 GGCAATAGAGCAGATTT-TGCCACTAGCCTTATCTTTTTGAGATAGCAA
66 AGCAATGGAACAGATTTAAACCACCAGCCTTATCTCTCTGAGATAGCAA
112049216 AAGAATCAAA
Statistics
Matches: 529, Mismatches: 76, Indels: 65
0.79 0.11 0.10
Matches are distributed among these distances:
168 5 0.01
169 47 0.09
170 73 0.14
171 7 0.01
172 4 0.01
175 4 0.01
176 34 0.06
177 298 0.56
178 51 0.10
179 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (177 bp):
AGATCTTATCTCCCTGAAGGTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATC
AGCAATGGAACAGATTTAAACCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTGGAAGA
ATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGATGAA
Found at i:112051378 original size:9 final size:9
Alignment explanation
Indices: 112051366--112051394 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
112051356 TCATCAATTC
112051366 ATATATTAT
1 ATATATTAT
112051375 ATATATTAT
1 ATATATTAT
112051384 ATATATTAT
1 ATATATTAT
112051393 AT
1 AT
112051395 GTTCATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
ATATATTAT
Found at i:112052982 original size:41 final size:42
Alignment explanation
Indices: 112052937--112053016 Score: 119
Period size: 41 Copynumber: 1.9 Consensus size: 42
112052927 ATACAGGGGA
* *
112052937 CACACGGTCT-ATCAACATGCCCGTGTG-CAAGCCGTGTGTCT
1 CACACAGTCTGATC-ACACGCCCGTGTGACAAGCCGTGTGTCT
112052978 CACACAGTCTGATCACACGCCCGTGTGACAAGCCGTGTG
1 CACACAGTCTGATCACACGCCCGTGTGACAAGCCGTGTG
112053017 GACTCAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
41 21 0.60
42 14 0.40
ACGTcount: A:0.21, C:0.33, G:0.25, T:0.21
Consensus pattern (42 bp):
CACACAGTCTGATCACACGCCCGTGTGACAAGCCGTGTGTCT
Found at i:112053756 original size:6 final size:6
Alignment explanation
Indices: 112053745--112053770 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
112053735 ACCGTAATGA
112053745 TAACAG TAACAG TAACAG TAACAG TA
1 TAACAG TAACAG TAACAG TAACAG TA
112053771 GTGGTACACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.19
Consensus pattern (6 bp):
TAACAG
Found at i:112056971 original size:23 final size:22
Alignment explanation
Indices: 112056945--112056996 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 22
112056935 TTTCTTTTAT
112056945 TTATTTTACTTTATATTAT-ATTA
1 TTATTTT-CTTTA-ATTATAATTA
* *
112056968 TTATATTTTTTTAATTATAATTT
1 TTAT-TTTCTTTAATTATAATTA
112056991 TTATTT
1 TTATTT
112056997 CTTAAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 7 0.28
23 15 0.60
24 3 0.12
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (22 bp):
TTATTTTCTTTAATTATAATTA
Found at i:112060839 original size:13 final size:15
Alignment explanation
Indices: 112060821--112060852 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
112060811 ATGTTTTTAG
112060821 AAAAATT-ATAA-AA
1 AAAAATTAATAATAA
112060834 AAAAATTAATAATAA
1 AAAAATTAATAATAA
112060849 AAAA
1 AAAA
112060853 CTATTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 4 0.24
15 6 0.35
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
AAAAATTAATAATAA
Found at i:112061187 original size:5 final size:6
Alignment explanation
Indices: 112061172--112061218 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
112061162 AAAATTATAT
*
112061172 TTTTTA TTTTTA TTTTTA TTTTTA GTTTTA GTTTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA --TTTTTA TTTTTA TTT
112061219 ATTAAATTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.15, C:0.00, G:0.04, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:112061239 original size:32 final size:32
Alignment explanation
Indices: 112061171--112061241 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 32
112061161 TAAAATTATA
**
112061171 TTTTTTATTTTTATTTTTATTTTTAGTTTTAG
1 TTTTTTATTTTTATTTTTATAATTAGTTTTAG
112061203 TTTTTTATTTTTATTTATTA-AATTA-TTTGTA-
1 TTTTTTATTTTTATTT-TTATAATTAGTTT-TAG
112061234 TTTTTTAT
1 TTTTTTAT
112061242 GATTGGGTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 11 0.31
32 21 0.60
33 3 0.09
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (32 bp):
TTTTTTATTTTTATTTTTATAATTAGTTTTAG
Found at i:112061270 original size:18 final size:18
Alignment explanation
Indices: 112061247--112061282 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
112061237 TTTATGATTG
112061247 GGTTGGGTAATTGGGTTA
1 GGTTGGGTAATTGGGTTA
*
112061265 GGTTGGGTACTTGGGTTA
1 GGTTGGGTAATTGGGTTA
112061283 ATATATATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.03, G:0.44, T:0.39
Consensus pattern (18 bp):
GGTTGGGTAATTGGGTTA
Found at i:112062279 original size:21 final size:21
Alignment explanation
Indices: 112062233--112062290 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
112062223 TAATATTAAA
112062233 ATAA-AATAAAATAATAAGTG
1 ATAATAATAAAATAATAAGTG
*
112062253 ATAATAATGAAAATAATAGGT-
1 ATAATAAT-AAAATAATAAGTG
*
112062274 ATAATAAATAATATAAT
1 ATAAT-AATAAAATAAT
112062291 GATATATGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 4 0.12
21 15 0.45
22 14 0.42
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (21 bp):
ATAATAATAAAATAATAAGTG
Found at i:112063038 original size:3 final size:3
Alignment explanation
Indices: 112063018--112063087 Score: 97
Period size: 3 Copynumber: 23.3 Consensus size: 3
112063008 AATGAAAATA
* * *
112063018 AAT ACT AAT ACT ACT AAT AAT AGAT -AT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
112063063 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
112063088 GTAAATGTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.03
3 57 0.93
4 2 0.03
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:112063193 original size:3 final size:3
Alignment explanation
Indices: 112063185--112063254 Score: 50
Period size: 3 Copynumber: 22.7 Consensus size: 3
112063175 AAATAATGGA
* * * * **
112063185 AAT AAT AAT AAC AAT AAAT AAT AAT AAC AAG AAT AAA AAT AGC AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
112063231 GAT AAT AGAA AAT AAT AAT AAT AA
1 AAT AAT A-AT AAT AAT AAT AAT AA
112063255 AGTAATGAAA
Statistics
Matches: 50, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
3 45 0.90
4 5 0.10
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.23
Consensus pattern (3 bp):
AAT
Found at i:112063203 original size:16 final size:16
Alignment explanation
Indices: 112063184--112063214 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
112063174 TAAATAATGG
112063184 AAATAATAATAACAAT
1 AAATAATAATAACAAT
112063200 AAATAATAATAACAA
1 AAATAATAATAACAA
112063215 GAATAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (16 bp):
AAATAATAATAACAAT
Found at i:112063854 original size:13 final size:12
Alignment explanation
Indices: 112063824--112063869 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
112063814 TAAAAATTTC
112063824 TATTT-TTTTTCT
1 TATTTATTTTT-T
112063836 T-TTTATTTTTT
1 TATTTATTTTTT
112063847 TATATTATTCTTTT
1 TAT-TTATT-TTTT
112063861 TATTTATTT
1 TATTTATTT
112063870 ACCCATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
11 5 0.17
12 8 0.27
13 10 0.33
14 7 0.23
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.80
Consensus pattern (12 bp):
TATTTATTTTTT
Found at i:112065194 original size:92 final size:92
Alignment explanation
Indices: 112065009--112065407 Score: 383
Period size: 89 Copynumber: 4.4 Consensus size: 92
112064999 AGCACGTGAG
* * * * * * **
112065009 CCAAAGCTTAACTCATCTCTCGCAATATGAGTCG-GTTTTTTGAAAAGTATAAATT-AAA-AGTA
1 CCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAACA
*** * *
112065071 GCTTTTGAAAATACCTCGTCATGTAAC
66 GAAATTGAAAATACCTCGACATGTAAA
*
112065098 CCAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAACA
1 CCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAACA
* * *
112065163 AAAATTGAAAATACCTC-AGCATGTGAG
66 GAAATTGAAAATACCTCGA-CATGTAAA
* * * * *
112065190 CCAAGGCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTG-AAAACAGAATTTGCAAA-AAT
1 CCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTG-AAAGAAC
**
112065251 AGATTTTGAAAATACCTCGACATGTAAA
65 AGAAATTGAAAATACCTCGACATGTAAA
* ***
112065279 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAAATATAAATTGAAAGAACA
1 CCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAACA
* *
112065344 GAAATTTAAAATACCTC-AGCTTGT---
66 GAAATTGAAAATACCTCGA-CATGTAAA
*
112065368 CCTGAA-GCTCAACTCACCTTTCGCAATATGAGTTGATTTT
1 CC--AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
112065408 GACAAACAGA
Statistics
Matches: 255, Mismatches: 42, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
89 97 0.38
90 62 0.24
91 11 0.04
92 85 0.33
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.29
Consensus pattern (92 bp):
CCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAACA
GAAATTGAAAATACCTCGACATGTAAA
Found at i:112065260 original size:181 final size:177
Alignment explanation
Indices: 112064983--112065941 Score: 813
Period size: 181 Copynumber: 5.5 Consensus size: 177
112064973 TTAAAAATAG
*** * * * * * *
112064983 AAATTGAAAATGGTTCAGCACGTGAGCCAAAGCTTAACTCATCTCTCGCAATATGAGTCGGTTTT
1 AAATTGAAAATACCTCAGCATGTG-GCCAAGGCTCAACTCACCTCTCGCAATATGAGT-TGATTT
* * ** * *
112065048 TTGAAAAGTATAAATT-AAAAGTAGCTTTTGAAAATACCTCGTCATGTAACCCAAGGCTCAACTC
64 TTGAAAA-CAGAAATTGAAAAACAGATTTTGAAAATACCTCG-CATGTAACCCGAGGCTCAACTC
*
112065112 ACCTCTCGCAATACGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAACAA
127 ACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAA-AACAA
*
112065164 AAATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGTG-GCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
112065229 TGAAAACAGAATTTGCAAAAATAGATTTTGAAAATACCTCGACATGTAAACCGAGGCTCAACTCA
65 TGAAAACAGAAATTG-AAAAACAGATTTTGAAAATACCTCG-CATGTAACCCGAGGCTCAACTCA
*** *
112065294 CCTCTCGCAATATGAGTTGATTTTTAAAAAAAATATAAATTGAAAGAACAG
128 CCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAA-AACAA
* * *
112065345 AAATTTAAAATACCTCAGC-T-TGTCCTGAA-GCTCAACTCACCTTTCGCAATATGAGTTGA-TT
1 AAATTGAAAATACCTCAGCATGTGGCC--AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
112065406 TTGACAAACAGAAATTG----A-A-A---T-----TACCTCAGC--GT-GCCCTGAAGCTCAACT
64 TTGA-AAACAGAAATTGAAAAACAGATTTTGAAAATACCTC-GCATGTAACCC-GAGGCTCAACT
* *
112065454 CATCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAATATAAATTAAAAAAAACAA
126 CACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAAATATAAATT--GAAAAACAA
*
112065510 AAATTGAAAATTCCTCAGCATGT-G---AGGCTCAACTCACCTCTCGC-A-ATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCATGTGGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * ** * **
112065569 GAAAAATATAAATTGAAAAAAACAGAAATTGAAAATACCTCAGCATGTGATTCGAGGCTCAACTC
66 G-AAAACAGAAATTG--AAAAACAGATTTTGAAAATACCTC-GCATGTAACCCGAGGCTCAACTC
* ** * *
112065634 ATCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAACAG
127 ACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAACAA
* * * * * * *
112065685 AACTTAAAAATTCCTCAGCA--TGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGTGGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * * **
112065748 TGAAAATAGAATTTGAAAAGCAAATTTTGAAAATACCTCGACATGCGACCCGAGGCTCAACTCAC
65 TGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCG-CATGTAACCCGAGGCTCAACTCAC
* * * *
112065813 TTTTCGCAATATGAGTTGA--TTTTTG--AAACATAAATTGAAAATACAT
129 CTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAA-ACAA
* * * **** *
112065859 AAATTGAAGATACCTCAACGTGT-TTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCT
1 AAATTGAAAATACCTCAGCATGTGGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
112065923 GAAAACAGAAA-T-AAAAACA
66 GAAAACAGAAATTGAAAAACA
112065942 TCAAAATACC
Statistics
Matches: 645, Mismatches: 87, Indels: 101
0.77 0.10 0.12
Matches are distributed among these distances:
160 9 0.01
161 19 0.03
162 51 0.08
164 25 0.04
165 22 0.03
166 4 0.01
167 2 0.00
168 1 0.00
169 2 0.00
172 8 0.01
173 17 0.03
174 62 0.10
175 31 0.05
176 2 0.00
177 84 0.13
178 27 0.04
179 92 0.14
180 29 0.04
181 158 0.24
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (177 bp):
AAATTGAAAATACCTCAGCATGTGGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGCATGTAACCCGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAACAA
Found at i:112065311 original size:89 final size:87
Alignment explanation
Indices: 112064926--112065425 Score: 364
Period size: 89 Copynumber: 5.6 Consensus size: 87
112064916 GCGATCTTGA
** * * * * * *
112064926 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAACGGACATT-AAAAATAGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAAAACAGAAATTGA
*** * * * *
112064990 AAATGGTTCAGCACGTGAGCCAAA
65 AAATACCTCAGCATGT-ACCCGAG
* * * * * * ** ***
112065014 GCTTAACTCATCTCTCGCAATATGAGTCGGTTTTTTGAAAAGTATAAATT-AAAAGTAGCTTTTG
1 GCTCAACTCACCTCTCGCAATATGAGT-TGATTTTTGAAAA-CAGAAATTGAAAAACAGAAATTG
*
112065078 AAAATACCTC-GTCATGTAACCCAAG
64 AAAATACCTCAG-CATGT-ACCCGAG
* * * *
112065103 GCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAACAAAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAAACAGAAATTGAAA-AACAGAAAT
* *
112065168 TGAAAATACCTCAGCATGTGAGCCAAG
62 TGAAAATACCTCAGCATGT-ACCCGAG
* * * **
112065195 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACAGAATTTGCAAAAATAGATTTTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG-AAAAACAGAAATTGA
*
112065260 AAATACCTC-GACATGTAAACCGAG
65 AAATACCTCAG-CATGT-ACCCGAG
* * *
112065284 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAAATATAAATTGAAAGAACAGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT---GAAAACAGAAATTGAAA-AACAGAAAT
* * * *
112065349 TTAAAATACCTCAGCTTGT-CCTGAA
62 TGAAAATACCTCAGCATGTACCCGAG
*
112065374 GCTCAACTCACCTTTCGCAATATGAGTTGA-TTTTGACAAACAGAAATTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAA
112065426 TTACCTCAGC
Statistics
Matches: 331, Mismatches: 64, Indels: 35
0.77 0.15 0.08
Matches are distributed among these distances:
86 1 0.00
87 13 0.04
88 35 0.11
89 130 0.39
90 55 0.17
91 10 0.03
92 85 0.26
93 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (87 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAGAAATTGAA
AATACCTCAGCATGTACCCGAG
Found at i:112065463 original size:162 final size:160
Alignment explanation
Indices: 112065284--112065766 Score: 463
Period size: 162 Copynumber: 2.9 Consensus size: 160
112065274 GTAAACCGAG
* ***
112065284 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAAATATAAATTGAAAGAACAGAAAT
1 GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAA-AACAGAAAT
* * * *
112065349 TTAAAATACCTCAGCTTGTCCTGAAGCTCAACTCACCTTTCGCAATATGAGTTGATTTTGACAAA
65 TAAAAATTCCTCAGCATG-CCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTGA-AAA
* *
112065414 CAGAAATTGAAATTACCTCAGC-GTG-CCCTGAA
128 CAGAAATTGAAAATACCTCAGCAGTGACTC-GAA
* *
112065446 GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAATATAAATTAAAAAAAACAAA
1 GCTCAACTCATCTCTCGCAATATGAGTTGA--TTTTTTTGAAAAATATAAATT--GAAAAACAGA
* * *
112065511 AATTGAAAATTCCTCAGCATG--TGAGGCTCAACTCACCTCTCGCAATGAGTTGATTTTTGAAAA
62 AATTAAAAATTCCTCAGCATGCCTGAGGCTCAACTCACCTTTCGCAAT-A--TGA--GTTG----
* *
112065574 ATATAAATTGAAAAAAACAGAAATTGAAAATACCTCAGCATGTGATTCGAG
118 AT-T---TTG---AAAACAGAAATTGAAAATACCTCAGCA-GTGACTCGAA
** * *
112065625 GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAACAGAACTT
1 GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAACAGAAATT
*
112065690 AAAAATTCCTCAGCATGCCCTGAGGCTCAACTCA-CTTCTCGCAATACGAGTTGATTTTTGAAAA
66 AAAAATTCCTCAGCATG-CCTGAGGCTCAACTCACCTT-TCGCAATATGAGTTGA-TTTTGAAAA
* *
112065754 TAGAATTTGAAAA
128 CAGAAATTGAAAA
112065767 GCAAATTTTG
Statistics
Matches: 265, Mismatches: 28, Indels: 55
0.76 0.08 0.16
Matches are distributed among these distances:
162 52 0.20
163 16 0.06
164 18 0.07
165 26 0.10
166 6 0.02
167 3 0.01
169 2 0.01
170 1 0.00
171 2 0.01
172 1 0.00
173 3 0.01
175 32 0.12
177 45 0.17
178 22 0.08
179 35 0.13
180 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.29
Consensus pattern (160 bp):
GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAACAGAAATT
AAAAATTCCTCAGCATGCCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTGAAAACAG
AAATTGAAAATACCTCAGCAGTGACTCGAA
Found at i:112065464 original size:72 final size:72
Alignment explanation
Indices: 112065340--112065479 Score: 226
Period size: 72 Copynumber: 1.9 Consensus size: 72
112065330 AAATTGAAAG
* * * *
112065340 AACAGAAATTTAAAATACCTCAGCTTGTCCTGAAGCTCAACTCACCTTTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAT
112065405 TTTGACA
66 TTTGACA
* *
112065412 AACAGAAATTGAAATTACCTCAGCGTGCCCTGAAGCTCAACTCATCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAT
112065477 TTT
66 TTT
112065480 TTTTTGAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 62 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (72 bp):
AACAGAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTGACA
Found at i:112065627 original size:341 final size:339
Alignment explanation
Indices: 112065103--112065765 Score: 881
Period size: 341 Copynumber: 1.9 Consensus size: 339
112065093 GTAACCCAAG
* *
112065103 GCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAACAAAAAT
1 GCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAAAAATATAAATTAAAAAAACAAAAAT
112065168 TGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAA
66 TGAAAATACCTCAGCATGT-AG-C-AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAA
* * * **
112065233 AACAGAATTTGCAAAAATAGATTTTGAAAATACCTCGACATGTAAACCGAGGCTCAACTCACCTC
128 AACAGAAATTGAAAAAACAGAAATTGAAAATACCTCGACATGTAAACCGAGGCTCAACTCACCTC
* * *
112065298 TCGCAATATGAGTTGATTTTTAAAAAAAATATAAATTGAAAGAACAGAAATTTAAAATACCTCAG
193 TCGCAATATGAGTTGATTTTTAAAAAAAACAGAAATTGAAA-AACAGAAATTAAAAATACCTCAG
* * *
112065363 CTTGTCCTGAAGCTCAACTCACCTT-TCGCAATATGAGTTGA-TTTTGACAAACAGAAATTGAAA
257 CATGCCCTGAAGCTCAACTCA-CTTCTCGCAATACGAGTTGATTTTTGA-AAACAGAAATTGAAA
112065426 TTACCTCAGCGTGCCCTGAA
320 TTACCTCAGCGTGCCCTGAA
* *
112065446 GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAATATAAATTAAAAAAAACAAA
1 GCTCAACTCACCTCTCGCAATACGAGTTGA--TTTTTTTGAAAAATATAAATT-AAAAAAACAAA
* *
112065511 AATTGAAAATTCCTCAGCATGT-G-AGGCTCAACTCACCTCTCGC-A-ATGAGTTGATTTTTGAA
63 AATTGAAAATACCTCAGCATGTAGCAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG-A
* * * ** *
112065572 AAATATAAATTGAAAAAAACAGAAATTGAAAATACCTC-AGCATGTGATTCGAGGCTCAACTCAT
127 AAACAGAAATTG-AAAAAACAGAAATTGAAAATACCTCGA-CATGTAAACCGAGGCTCAACTCAC
*** * * *
112065636 CTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAACAGAACTTAAAAATTCCTC
190 CTCTCGCAATATGAGTTGATTTTTAAAAAAAACAGAAATTGAAAAACAGAAATTAAAAATACCTC
* * *
112065701 AGCATGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGAAAATAGAATTTGAAA
255 AGCATGCCCTGAAGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGAAAACAGAAATTGAAA
112065766 AGCAAATTTT
Statistics
Matches: 280, Mismatches: 32, Indels: 19
0.85 0.10 0.06
Matches are distributed among these distances:
339 18 0.06
340 78 0.28
341 104 0.37
343 28 0.10
344 1 0.00
345 21 0.08
346 30 0.11
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (339 bp):
GCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAAAAATATAAATTAAAAAAACAAAAAT
TGAAAATACCTCAGCATGTAGCAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAC
AGAAATTGAAAAAACAGAAATTGAAAATACCTCGACATGTAAACCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTAAAAAAAACAGAAATTGAAAAACAGAAATTAAAAATACCTCAGCATG
CCCTGAAGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGAAAACAGAAATTGAAATTACCT
CAGCGTGCCCTGAA
Found at i:112065860 original size:15 final size:15
Alignment explanation
Indices: 112065840--112065871 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
112065830 GATTTTTGAA
112065840 ACATAAATTGAAAAT
1 ACATAAATTGAAAAT
*
112065855 ACATAAATTGAAGAT
1 ACATAAATTGAAAAT
112065870 AC
1 AC
112065872 CTCAACGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.25
Consensus pattern (15 bp):
ACATAAATTGAAAAT
Found at i:112065915 original size:86 final size:86
Alignment explanation
Indices: 112065406--112065941 Score: 444
Period size: 86 Copynumber: 6.1 Consensus size: 86
112065396 TGAGTTGATT
* * * * * *
112065406 TTGACAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAAGCTCAACTCATCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
*
112065471 GTTGATTTTTTTTTGAAAAATATAAA
66 GTTGA----TTTTTG-AAAACATAAA
* * * * *
112065497 TTAAAAAAAACAAAAATTGAAAATTCCTCAGCATG---TGAGGCTCAACTCACCTCTCGC-A-AT
1 TT--GAAAAACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
112065557 GAGTTGATTTTTGAAAAATATAAA
64 GAGTTGATTTTTG-AAAACATAAA
* * *
112065581 TTGAAAAAAACAGAAATTGAAAATACCTCAGCATGTGA-TTCGAGGCTCAACTCATCTCTCGCAA
1 TTG--AAAAACAGAAATTGAAAATACCTCA--ACGTGACCT-GAGGCTCAACTCACCTCTCGCAA
*
112065645 TATGAGTTGATTTTTTTGAAAAGCAGAAA
61 TATGAGTTGA--TTTTTGAAAA-CATAAA
* * * * * * * *
112065674 TTGAAAAACAGAACTTAAAAATTCCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATACGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
112065739 GTTGATTTTTGAAAATAGAAT
66 GTTGATTTTTGAAAACATAAA
* * * * * * *
112065760 TTGAAAAGCA-AATTTTGAAAATACCTCGACATGCGACCCGAGGCTCAACTCACTTTTCGCAATA
1 TTGAAAAACAGAA-ATTGAAAATACCTC-A-ACGTGACCTGAGGCTCAACTCACCTCTCGCAATA
112065824 TGAGTTGATTTTTG-AAACATAAA
63 TGAGTTGATTTTTGAAAACATAAA
* * ***
112065847 TTGAAAATACATAAATTGAAGATACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-ACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
* *
112065912 AGTTGATTTCTGAAAACAGAAA
65 AGTTGATTTTTGAAAACATAAA
112065934 -T-AAAAACA
1 TTGAAAAACA
112065942 TCAAAATACC
Statistics
Matches: 366, Mismatches: 58, Indels: 49
0.77 0.12 0.10
Matches are distributed among these distances:
84 45 0.12
85 6 0.02
86 66 0.18
87 33 0.09
88 64 0.17
89 55 0.15
90 22 0.06
91 33 0.09
92 4 0.01
93 38 0.10
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (86 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAACATAAA
Found at i:112078155 original size:22 final size:21
Alignment explanation
Indices: 112078129--112078169 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
112078119 ATATTAAAAT
112078129 AAAATAATAAGTGATAATAATG
1 AAAATAATAAGT-ATAATAATG
*
112078151 AAAATAATAGGTATAATAA
1 AAAATAATAAGTATAATAA
112078170 ATAATATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (21 bp):
AAAATAATAAGTATAATAATG
Found at i:112078178 original size:21 final size:22
Alignment explanation
Indices: 112078125--112078179 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
112078115 AATAATATTA
112078125 AAATAAAATAATAAGTGATAAT
1 AAATAAAATAATAAGTGATAAT
*
112078147 -AATGAAAATAATAGGT-ATAAT
1 AAAT-AAAATAATAAGTGATAAT
*
112078168 AAATAATATAAT
1 AAATAAAATAAT
112078180 GATATATGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (22 bp):
AAATAAAATAATAAGTGATAAT
Found at i:112080353 original size:7 final size:7
Alignment explanation
Indices: 112080338--112080370 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
112080328 TTAACCGACT
*
112080338 GTTTTGG
1 GTTTAGG
112080345 GTTTAGG
1 GTTTAGG
112080352 GTTTAGG
1 GTTTAGG
112080359 GTTTAGG
1 GTTTAGG
112080366 GTTTA
1 GTTTA
112080371 AGATTTTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.39, T:0.48
Consensus pattern (7 bp):
GTTTAGG
Found at i:112080904 original size:14 final size:15
Alignment explanation
Indices: 112080885--112080917 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
112080875 TTAATGATAT
112080885 ATAAAATAT-TTTAA
1 ATAAAATATATTTAA
112080899 ATAAAATATATTTAA
1 ATAAAATATATTTAA
112080914 ATAA
1 ATAA
112080918 TTTAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
ATAAAATATATTTAA
Found at i:112080909 original size:25 final size:26
Alignment explanation
Indices: 112080854--112080927 Score: 64
Period size: 27 Copynumber: 2.8 Consensus size: 26
112080844 CAAGCAGTTA
* *
112080854 ATATATAAATTATTTGTAAA-ATTAATG
1 ATATATAAAATATTT-TAAATA-AAATG
112080881 ATATATAAAATATTTTAAATAAAAT-
1 ATATATAAAATATTTTAAATAAAATG
* *
112080906 ATAT-TTAAATAATTTAATATAA
1 ATATATAAAATATTTTAA-ATAA
112080928 TGAATTAATG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 11 0.27
25 8 0.20
26 7 0.17
27 15 0.37
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (26 bp):
ATATATAAAATATTTTAAATAAAATG
Found at i:112084956 original size:3 final size:3
Alignment explanation
Indices: 112084948--112084982 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
112084938 CTAAGTGGTA
112084948 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
112084983 AGCATTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:112086058 original size:18 final size:18
Alignment explanation
Indices: 112086035--112086070 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
112086025 ATTATCTATA
112086035 CACATTAAAAATGAAAAT
1 CACATTAAAAATGAAAAT
112086053 CACATTAAAAATGAAAAT
1 CACATTAAAAATGAAAAT
112086071 AATAATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22
Consensus pattern (18 bp):
CACATTAAAAATGAAAAT
Found at i:112086785 original size:25 final size:24
Alignment explanation
Indices: 112086739--112086786 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
112086729 CTTCACCCCC
112086739 AATTTCTAGAAATTTTCATTTTTA
1 AATTTCTAGAAATTTTCATTTTTA
*
112086763 AATTTACT-GAAATTTTTATTTTTA
1 AATTT-CTAGAAATTTTCATTTTTA
112086787 TTTTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (24 bp):
AATTTCTAGAAATTTTCATTTTTA
Found at i:112086795 original size:22 final size:23
Alignment explanation
Indices: 112086739--112086801 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
112086729 CTTCACCCCC
*
112086739 AATTT-CTAGAAATTTTCATTTTT
1 AATTTACT-GAAATTTTTATTTTT
112086762 AAATTTACTGAAATTTTTATTTTT
1 -AATTTACTGAAATTTTTATTTTT
**
112086786 -ATTTTTTGAAATTTTT
1 AATTTACTGAAATTTTT
112086802 TATTATAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
22 14 0.40
24 19 0.54
25 2 0.06
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (23 bp):
AATTTACTGAAATTTTTATTTTT
Found at i:112087539 original size:2 final size:2
Alignment explanation
Indices: 112087532--112087557 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
112087522 AAACAGAAGT
112087532 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
112087558 TGCAAGGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:112089074 original size:93 final size:93
Alignment explanation
Indices: 112088920--112089099 Score: 243
Period size: 93 Copynumber: 1.9 Consensus size: 93
112088910 TCCTGCCGAC
* * * *
112088920 CATTCTTCTGCACCAGTCATAGGTTGTAACGCGAAAGGGTATACCCCTGTTCATGGAAAATCATG
1 CATTCGTCTGCACCAGTCATAGGTGGTAACGCGAAAGGGCATACCCCTCTTCATGGAAAATCATG
* *
112088985 TCCTCCTCCAAATGTGCTTCCTACTGAT
66 TCCTCCTACAAATGCGCTTCCTACTGAT
* ** * * * *
112089013 CATTCGTCTGCACCAGTCATCGGTGGTAACGTTACAGGGCATACCTCTCTTTATGGCAAATCATG
1 CATTCGTCTGCACCAGTCATAGGTGGTAACGCGAAAGGGCATACCCCTCTTCATGGAAAATCATG
112089078 TCCTCCTACAAATGCGCTTCCT
66 TCCTCCTACAAATGCGCTTCCT
112089100 GTTTATTGCA
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (93 bp):
CATTCGTCTGCACCAGTCATAGGTGGTAACGCGAAAGGGCATACCCCTCTTCATGGAAAATCATG
TCCTCCTACAAATGCGCTTCCTACTGAT
Found at i:112091106 original size:18 final size:18
Alignment explanation
Indices: 112091073--112091107 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
112091063 TACAAATCAC
* *
112091073 ATATTCAACTATTTAATG
1 ATATTCAAATACTTAATG
112091091 ATATTCAAATACTTAAT
1 ATATTCAAATACTTAAT
112091108 AAAAAGATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (18 bp):
ATATTCAAATACTTAATG
Found at i:112104447 original size:640 final size:640
Alignment explanation
Indices: 112103205--112104453 Score: 1809
Period size: 640 Copynumber: 1.9 Consensus size: 640
112103195 ATTGAGAGGC
* * *
112103205 TAATTGAGTAGGAATGAAATTGTTATTTATTAAAACCTTAGGGGAAAAATAGTAATAAACAGCTT
1 TAATTGAGTAGGAACGAAATTATTATTTATTAAAACCTTAGCGGAAAAATAGTAATAAACAGCTT
* * *
112103270 GCACTAACAATATTGGACAGCAGAAGTAGACTAACTTTGAAAAATCACCATAAATTGTAGGAATT
66 GCACTAACAATATTGGACAACAGAAGTAAACTAACTTTGAAAAATCACCATAAATTGTAGGAATC
* *
112103335 GAATTAGAAGATGAAAAAAACATGGAATTAAAGCTTATTGAGTCTAGTTTCTCATAGAATAAATG
131 AAATTAGAAGATGAAAAAAACATGGAATTAAAGCTTATTGAGTCTAGTTTCTCATAGAAGAAATG
* * **
112103400 ATGTAAGCAATTGATTTGTAAATTTTGAGATATAATAAATTTTGTGAGACAAGGTCAGAATGAAT
196 ATGTAAGCAATGGAATTGTAAATCATGAGATATAATAAATTTTGTGAGACAAGGTCAGAATGAAT
*
112103465 TTAGGTTCCCCTGTTCTGAATTTGAAAAATCATAAAAAATTGAATAAAAATAATTATGGGCTTAA
261 TTAGGTTCCCCTGTTCTGAATTTGAAAAATCATAAAAAATTGAATAAAAATAATTAGGGGCTTAA
* *
112103530 ATTTATATGTATAGGATCCTGAATGAGTCTATTTCCAAGAAAAATAAATGGGAACATCATCCAAA
326 ATTTATATGTATAGAATCCTGAATGAGTCTATTTCCAAGAAAAACAAATGGGAACATCATCCAAA
* * ** *
112103595 TTCTGTATGAAGAGATAATTAATTTTTAGTGAAGAAGGGTCAAAACTGTTGGACAGCAGAACAGG
391 TTCTGTATCAAGAGATAATAAATTTTTAGTGAAGAAGGGTCAAAACTGTCAGACAACAGAACAGG
*
112103660 GGTGACTTTAAAGAATAAACTGTACTTATTGGCTAAACCAAAAATTCTGAAAATATTATAGTAAG
456 GGTGAATTTAAAGAATAAACTGTACTTATTGGCTAAACCAAAAATTCTGAAAATATTATAGTAAG
* * * * * *
112103725 AAGATATGTGAGTCTAGTTTTAGATAAAATTATCGAATCCTAATTTGGAGCTTTGTAGCTCAAGA
521 AAGATATATGAATCTAGTTTCAGAGAAAATTAGCGAAT-CTAATTTGGAGCTTCGTAGCTCAAGA
112103790 TAATAATAATTTAGTGACTATGACTCAAGTAGACAGCTTTGAATGAACTATAAAAA
585 TAATAATAATTTAGTGACTATGACTCAAGTAGACAGCTTTGAATGAACTATAAAAA
* * *
112103846 TAATTGAGTAGGGACGAAATTATTTTTTATTAAAAGCC-TAGCGGAAAAATGGTAATAAACAGCT
1 TAATTGAGTAGGAACGAAATTATTATTTATTAAAA-CCTTAGCGGAAAAATAGTAATAAACAGCT
* *
112103910 TGCACTAA-AACAGTTTGGACAACAGCAGTAAACTAACTTTGAAAAATCACCATAAATTGTAGGA
65 TGCACTAACAATA--TTGGACAACAGAAGTAAACTAACTTTGAAAAATCACCATAAATTGTAGGA
* * *
112103974 ATCAAATTAGAAGATGAACAAAATATGGAATTAAATCTTATTGAGTCTAGTTTCTCATAGAAGAA
128 ATCAAATTAGAAGATGAAAAAAACATGGAATTAAAGCTTATTGAGTCTAGTTTCTCATAGAAGAA
* * *
112104039 ATTATGTAAGCAATGGAATTGTAAATCATGAGATATGATAAATTTTGTGAGACAATGTCAGAATG
193 ATGATGTAAGCAATGGAATTGTAAATCATGAGATATAATAAATTTTGTGAGACAAGGTCAGAATG
* * * * * *
112104104 ATTTTGGGTT-CCCTGTTCTGACTTTGTAAAATCATCAAAAATTGGATAAAAATAATTAGGGGCT
258 AATTTAGGTTCCCCTGTTCTGAATTTGAAAAATCATAAAAAATTGAATAAAAATAATTAGGGGCT
* * * * * *
112104168 TAAATTTATATGTTTAGAAT-TTGAATGAGTTTATTTTCAAGAGAAACAAATGGGAACATCATTC
323 TAAATTTATATGTATAGAATCCTGAATGAGTCTATTTCCAAGAAAAACAAATGGGAACATCATCC
* *
112104232 GAA-TCATGTA-CAAGGAGATAATAAATTTTTAGTGAAGAAGGGTCAGAACTGTCAGACAACAGA
388 AAATTC-TGTATCAA-GAGATAATAAATTTTTAGTGAAGAAGGGTCAAAACTGTCAGACAACAGA
*
112104295 ACAGGGGTGAATTTAAAGAATAAACTGTACTTATTGGCTAAACCAAAAA-TCTTGAAAATTTTAT
451 ACAGGGGTGAATTTAAAGAATAAACTGTACTTATTGGCTAAACCAAAAATTC-TGAAAATATTAT
* * *
112104359 GGTAAGAAGATATATGAATCTAGTTTCAGGGAAAATTAGCAGATAT-TAATTTTGAG-TTCCGTA
515 AGTAAGAAGATATATGAATCTAGTTTCAGAGAAAATTAGC-GA-ATCTAATTTGGAGCTT-CGTA
112104422 GCTTC-AGAT-ATAAATAATTTAGTGACTATGAC
577 GC-TCAAGATAAT-AATAATTTAGTGACTATGAC
112104454 ACAGGTGGAT
Statistics
Matches: 541, Mismatches: 56, Indels: 23
0.87 0.09 0.04
Matches are distributed among these distances:
639 10 0.02
640 221 0.41
641 134 0.25
642 176 0.33
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (640 bp):
TAATTGAGTAGGAACGAAATTATTATTTATTAAAACCTTAGCGGAAAAATAGTAATAAACAGCTT
GCACTAACAATATTGGACAACAGAAGTAAACTAACTTTGAAAAATCACCATAAATTGTAGGAATC
AAATTAGAAGATGAAAAAAACATGGAATTAAAGCTTATTGAGTCTAGTTTCTCATAGAAGAAATG
ATGTAAGCAATGGAATTGTAAATCATGAGATATAATAAATTTTGTGAGACAAGGTCAGAATGAAT
TTAGGTTCCCCTGTTCTGAATTTGAAAAATCATAAAAAATTGAATAAAAATAATTAGGGGCTTAA
ATTTATATGTATAGAATCCTGAATGAGTCTATTTCCAAGAAAAACAAATGGGAACATCATCCAAA
TTCTGTATCAAGAGATAATAAATTTTTAGTGAAGAAGGGTCAAAACTGTCAGACAACAGAACAGG
GGTGAATTTAAAGAATAAACTGTACTTATTGGCTAAACCAAAAATTCTGAAAATATTATAGTAAG
AAGATATATGAATCTAGTTTCAGAGAAAATTAGCGAATCTAATTTGGAGCTTCGTAGCTCAAGAT
AATAATAATTTAGTGACTATGACTCAAGTAGACAGCTTTGAATGAACTATAAAAA
Found at i:112104976 original size:50 final size:51
Alignment explanation
Indices: 112104901--112105027 Score: 211
Period size: 50 Copynumber: 2.5 Consensus size: 51
112104891 CCATGGCAAC
*
112104901 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGT-AA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAA
*
112104951 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAA
* *
112105002 AAGTGAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
112105028 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
50 47 0.65
51 25 0.35
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.25
Consensus pattern (51 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAA
Found at i:112105041 original size:31 final size:31
Alignment explanation
Indices: 112105003--112105120 Score: 209
Period size: 31 Copynumber: 3.8 Consensus size: 31
112104993 ACAAATGACA
112105003 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
112105034 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
112105065 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
112105096 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
112105121 AAGTGACAAG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 82 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:112105293 original size:49 final size:47
Alignment explanation
Indices: 112105142--112105346 Score: 210
Period size: 47 Copynumber: 4.4 Consensus size: 47
112105132 GATTTCTGTA
* * * * * * *
112105142 TAAGACCATATCTGGGATATGGCATCG-GTGTGATATATGCTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGAATGTGATATGTGATTC-GTG
* * * *
112105189 TAAGACCATATCTGGGATATGGCATC-AGTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGAATGTGATATGTGATTCGTG
112105235 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-ATGTGATATGTGATT-CGTG
*
112105284 TAAGACCATAGCTGGGCTATGGCATCG-A--T-ATATG-AATAT-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGAATGTGATATGTGAT-TCGTG
112105326 TAAGACCATAGCTGGGCTATG
1 TAAGACCATAGCTGGGCTATG
112105347 TGAAGATGTG
Statistics
Matches: 143, Mismatches: 10, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
42 24 0.17
43 2 0.01
44 6 0.04
45 1 0.01
46 26 0.18
47 40 0.28
48 13 0.09
49 31 0.22
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCGAATGTGATATGTGATTCGTG
Found at i:112105306 original size:95 final size:89
Alignment explanation
Indices: 112105142--112105346 Score: 234
Period size: 95 Copynumber: 2.2 Consensus size: 89
112105132 GATTTCTGTA
* * * *
112105142 TAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTGTATAAGACCATATCTGGGAT
1 TAAGACCATAGCTGGGCTATGGCATCGATGTGATATATGCTACTGTATAAGACCATAGCTGGGAT
*
112105207 ATGGCATCAGTGAGATATGTGAT-TCGTG
66 ATGGCATC---GAGATATG-AATAT-GTG
* * *
112105235 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTAC-GTGTAAGACCATAGCTGG
1 TAAGACCATAGCTGGGCTATGGCATCG--ATGTGATATATG-CTACTGTATAAGACCATAGCTGG
* *
112105299 GCTATGGCATCGATATATGAATATGTG
63 GATATGGCATCGAGATATGAATATGTG
112105326 TAAGACCATAGCTGGGCTATG
1 TAAGACCATAGCTGGGCTATG
112105347 TGAAGATGTG
Statistics
Matches: 98, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
91 26 0.27
92 8 0.08
93 25 0.26
95 36 0.37
96 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (89 bp):
TAAGACCATAGCTGGGCTATGGCATCGATGTGATATATGCTACTGTATAAGACCATAGCTGGGAT
ATGGCATCGAGATATGAATATGTG
Found at i:112105377 original size:31 final size:31
Alignment explanation
Indices: 112105316--112105377 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
112105306 CATCGATATA
* **
112105316 TGAATATGTGTAAGACCATAGCTGGGCTATG
1 TGAAGATGTGTAAGACCATAGCTGAACTATG
*
112105347 TGAAGATGTGTAAGACCATAGTTGAACTATG
1 TGAAGATGTGTAAGACCATAGCTGAACTATG
112105378 GCATCGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.29
Consensus pattern (31 bp):
TGAAGATGTGTAAGACCATAGCTGAACTATG
Found at i:112108861 original size:38 final size:38
Alignment explanation
Indices: 112108810--112108888 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
112108800 GATTGTTCAA
112108810 ACTCTAAAAGGCATTAGAGAAGCAAGCATGATAAGTTG
1 ACTCTAAAAGGCATTAGAGAAGCAAGCATGATAAGTTG
*
112108848 ACTCTAAAAGGCATTAGAGAAGCAATCATGATAAGTTG
1 ACTCTAAAAGGCATTAGAGAAGCAAGCATGATAAGTTG
112108886 ACT
1 ACT
112108889 TTTGAGAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.23
Consensus pattern (38 bp):
ACTCTAAAAGGCATTAGAGAAGCAAGCATGATAAGTTG
Found at i:112126382 original size:21 final size:21
Alignment explanation
Indices: 112126244--112126375 Score: 228
Period size: 21 Copynumber: 6.3 Consensus size: 21
112126234 GCTACAGAAG
*
112126244 AAGAAGAAAAGGACAGTGGAA
1 AAGAAGAAAAGGACATTGGAA
*
112126265 AAGAAGAAGAGGACATTGGAA
1 AAGAAGAAAAGGACATTGGAA
112126286 AAGAAGAAAAGGACATTGGAA
1 AAGAAGAAAAGGACATTGGAA
112126307 AAGAAGAAAAGGACATTGGAA
1 AAGAAGAAAAGGACATTGGAA
*
112126328 AAGAAGAAAAGGACATTGGGA
1 AAGAAGAAAAGGACATTGGAA
*
112126349 AAGAAGAAAAGGACAGTGGAA
1 AAGAAGAAAAGGACATTGGAA
112126370 AAGAAG
1 AAGAAG
112126376 TCAAGGAACC
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 105 1.00
ACGTcount: A:0.56, C:0.05, G:0.32, T:0.08
Consensus pattern (21 bp):
AAGAAGAAAAGGACATTGGAA
Found at i:112130410 original size:16 final size:16
Alignment explanation
Indices: 112130389--112130422 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
112130379 TTTTCGGTGC
* *
112130389 ATACATATATTTATAT
1 ATACATACATATATAT
112130405 ATACATACATATATAT
1 ATACATACATATATAT
112130421 AT
1 AT
112130423 GCTCTTTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (16 bp):
ATACATACATATATAT
Found at i:112132840 original size:13 final size:14
Alignment explanation
Indices: 112132822--112132850 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
112132812 TAGTCAATAA
112132822 AAAACTC-TAAAAC
1 AAAACTCTTAAAAC
112132835 AAAACTCTTAAAAC
1 AAAACTCTTAAAAC
112132849 AA
1 AA
112132851 CAACACTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.62, C:0.21, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAACTCTTAAAAC
Found at i:112134217 original size:2 final size:2
Alignment explanation
Indices: 112134165--112134197 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
112134155 CGTGTGTGTG
*
112134165 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
112134198 GGAGAGAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:112139931 original size:18 final size:18
Alignment explanation
Indices: 112139908--112139945 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
112139898 TAGAATTTCT
*
112139908 TTTTTATCTCAAAAGTAC
1 TTTTTATCTCAAAAATAC
112139926 TTTTTATCTCAAAAATAC
1 TTTTTATCTCAAAAATAC
112139944 TT
1 TT
112139946 CTTAGCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.16, G:0.03, T:0.47
Consensus pattern (18 bp):
TTTTTATCTCAAAAATAC
Found at i:112140089 original size:20 final size:21
Alignment explanation
Indices: 112140045--112140090 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
112140035 AGAAGACTAA
* *
112140045 TTATTCTTTTACCACTTTCAT
1 TTATTCTTGTACCACTTTAAT
*
112140066 TTATTCTTGTACTA-TTTAAT
1 TTATTCTTGTACCACTTTAAT
112140086 TTATT
1 TTATT
112140091 TTTTTGTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.22, C:0.15, G:0.02, T:0.61
Consensus pattern (21 bp):
TTATTCTTGTACCACTTTAAT
Found at i:112140146 original size:13 final size:13
Alignment explanation
Indices: 112140128--112140152 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
112140118 AATTAATACA
112140128 ATACTATATTATT
1 ATACTATATTATT
112140141 ATACTATATTAT
1 ATACTATATTAT
112140153 GATTAAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
ATACTATATTATT
Found at i:112140279 original size:23 final size:23
Alignment explanation
Indices: 112140243--112140296 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
112140233 ACCACAATTA
* *
112140243 TAATTATAATTATAATTTTTTTAT
1 TAATT-TAAATATAATTTTGTTAT
112140267 TAATTTAAATATAATTTTGTTAT
1 TAATTTAAATATAATTTTGTTAT
112140290 TAATTTA
1 TAATTTA
112140297 TTATATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 23 0.82
24 5 0.18
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TAATTTAAATATAATTTTGTTAT
Found at i:112141567 original size:6 final size:6
Alignment explanation
Indices: 112141556--112141589 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
112141546 CTTTATTGGA
* *
112141556 AAAATC AAAATC AAAATC AAAATA AAAAAC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
112141590 GGTAACCCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (6 bp):
AAAATC
Found at i:112142433 original size:19 final size:19
Alignment explanation
Indices: 112142411--112142449 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
112142401 AAAAATGCAA
112142411 ATATTAAAATAAAAATATT
1 ATATTAAAATAAAAATATT
*
112142430 ATATTAAAATATAAATATT
1 ATATTAAAATAAAAATATT
112142449 A
1 A
112142450 AATCTACAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATATTAAAATAAAAATATT
Found at i:112143858 original size:25 final size:26
Alignment explanation
Indices: 112143812--112143860 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
112143802 AATTTTTATT
*
112143812 TTTATTAATACAAAAAGCTAATTTAA
1 TTTATTAATACAAAAAGATAATTTAA
112143838 TTTATTTAATA-AAAAA-ATAATTT
1 TTTA-TTAATACAAAAAGATAATTT
112143861 CAACTAATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 6 0.29
26 9 0.43
27 6 0.29
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (26 bp):
TTTATTAATACAAAAAGATAATTTAA
Found at i:112147161 original size:18 final size:18
Alignment explanation
Indices: 112147138--112147173 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
112147128 AGATACATAA
112147138 TTCATTGTATACTATATG
1 TTCATTGTATACTATATG
112147156 TTCATTGTATACTATATG
1 TTCATTGTATACTATATG
112147174 AAAAATCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (18 bp):
TTCATTGTATACTATATG
Found at i:112149658 original size:19 final size:19
Alignment explanation
Indices: 112149625--112149669 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
112149615 ACTTTCTATC
112149625 TTTTTAT-TTTATAACAAT
1 TTTTTATATTTATAACAAT
* **
112149643 TTTTTATATTTGTAACTTT
1 TTTTTATATTTATAACAAT
112149662 TTTTTATA
1 TTTTTATA
112149670 CAAGTAGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTTATATTTATAACAAT
Found at i:112149970 original size:21 final size:20
Alignment explanation
Indices: 112149930--112149970 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
112149920 AATATTAGTA
*
112149930 GTATAAAAAAGTTATGGAGT
1 GTATAAAAAAGTAATGGAGT
*
112149950 GTATAAAAATAGTAATTGAGT
1 GTATAAAAA-AGTAATGGAGT
112149971 CTTGAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.46, C:0.00, G:0.22, T:0.32
Consensus pattern (20 bp):
GTATAAAAAAGTAATGGAGT
Found at i:112154588 original size:41 final size:41
Alignment explanation
Indices: 112154543--112154623 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
112154533 TTATGGCAGA
*
112154543 GGAATTGAATAATTTTGGTGTTAATTTGTTAGAAATTAAGG
1 GGAATTGAATAATTTTGGTGTTAAATTGTTAGAAATTAAGG
112154584 GGAATTGAATAATTTTGGTGTTAAATTGTTAGAAATTAAG
1 GGAATTGAATAATTTTGGTGTTAAATTGTTAGAAATTAAG
112154624 CTTAGTATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (41 bp):
GGAATTGAATAATTTTGGTGTTAAATTGTTAGAAATTAAGG
Found at i:112155386 original size:38 final size:38
Alignment explanation
Indices: 112155322--112155401 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 38
112155312 AGTACGAGAT
** * * *
112155322 TATGCGCTTATGTGCGTAGATACACTTTGTGTGCTAGA
1 TATGCGCTTATACGCGTAGATACACTTCGCGTGCCAGA
* *
112155360 TATGCGCTTATACGCGTGGATGCACTTCGCGTGCCAGA
1 TATGCGCTTATACGCGTAGATACACTTCGCGTGCCAGA
112155398 TATG
1 TATG
112155402 AGTTTTGTAC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.33
Consensus pattern (38 bp):
TATGCGCTTATACGCGTAGATACACTTCGCGTGCCAGA
Found at i:112159161 original size:17 final size:17
Alignment explanation
Indices: 112159139--112159177 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
112159129 ATAATACTAA
112159139 ATATATATACATAATAT
1 ATATATATACATAATAT
*
112159156 ATATATATAGATAATAT
1 ATATATATACATAATAT
112159173 ATATA
1 ATATA
112159178 AAATGAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (17 bp):
ATATATATACATAATAT
Found at i:112159176 original size:13 final size:13
Alignment explanation
Indices: 112159138--112159178 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
112159128 AATAATACTA
*
112159138 AATATATATACAT
1 AATATATATATAT
112159151 AATATATATATAT
1 AATATATATATAT
112159164 AGATA-ATATATAT
1 A-ATATATATATAT
112159177 AA
1 AA
112159179 AATGAACATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 1 0.04
13 22 0.85
14 3 0.12
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (13 bp):
AATATATATATAT
Found at i:112159264 original size:32 final size:31
Alignment explanation
Indices: 112159186--112159279 Score: 93
Period size: 32 Copynumber: 2.9 Consensus size: 31
112159176 TAAAATGAAC
112159186 ATGTACAATATATATTAGAAATACTA-AT-AAT
1 ATGTAC-ATATATATTA-AAATACTACATAAAT
** *
112159217 ATAAAAAATATATATTAATAATACTACATAAAT
1 AT-GTACATATATATTAA-AATACTACATAAAT
*
112159250 ATGTACATATATATTAAAATAAATACATAA
1 ATGTACATATATATTAAAAT-ACTACATAA
112159280 TAATATTAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
30 1 0.02
31 22 0.43
32 23 0.45
33 5 0.10
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.34
Consensus pattern (31 bp):
ATGTACATATATATTAAAATACTACATAAAT
Found at i:112159288 original size:22 final size:22
Alignment explanation
Indices: 112159204--112159306 Score: 72
Period size: 22 Copynumber: 4.7 Consensus size: 22
112159194 TATATATTAG
112159204 AAATAC-TAATAATA-TAAAA-
1 AAATACATAATAATATTAAAAT
* * *
112159223 AATATATATTAATAATACT-ACAT
1 AA-ATACA-TAATAATATTAAAAT
**
112159246 AAATATGTACATATATATTAAAAT
1 AAATACATA-ATA-ATATTAAAAT
112159270 AAATACATAATAATATTAAAAGT
1 AAATACATAATAATATTAAAA-T
*
112159293 ATATACATAA-AATA
1 AAATACATAATAATA
112159307 GTGTTAAAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
19 2 0.03
20 3 0.04
21 2 0.03
22 30 0.45
23 20 0.30
24 10 0.15
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (22 bp):
AAATACATAATAATATTAAAAT
Found at i:112159335 original size:23 final size:22
Alignment explanation
Indices: 112159253--112159331 Score: 63
Period size: 25 Copynumber: 3.5 Consensus size: 22
112159243 CATAAATATG
112159253 TACAT-ATATATT-AAAATAAA
1 TACATAATATATTAAAAATAAA
* *
112159273 TACATAATAATATTAAAAGTATA
1 TACATAAT-ATATTAAAAATAAA
* *
112159296 TACATAAAATAGTGTTAAAAATACA
1 TACAT--AATA-TATTAAAAATAAA
*
112159321 CACATAATATA
1 TACATAATATA
112159332 GTTATTAATA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
20 5 0.11
21 2 0.04
22 6 0.13
23 15 0.33
24 1 0.02
25 17 0.37
ACGTcount: A:0.57, C:0.08, G:0.04, T:0.32
Consensus pattern (22 bp):
TACATAATATATTAAAAATAAA
Found at i:112159456 original size:3 final size:3
Alignment explanation
Indices: 112159448--112159483 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
112159438 AAACATATAC
112159448 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
112159484 GATGTATGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:112159828 original size:11 final size:11
Alignment explanation
Indices: 112159808--112159842 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
112159798 AACATTAAAA
*
112159808 ATATATAATAT
1 ATATACAATAT
112159819 ATATACAATAT
1 ATATACAATAT
112159830 ATATACAATAT
1 ATATACAATAT
112159841 AT
1 AT
112159843 TCATATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (11 bp):
ATATACAATAT
Found at i:112159840 original size:9 final size:10
Alignment explanation
Indices: 112159808--112159850 Score: 54
Period size: 9 Copynumber: 4.4 Consensus size: 10
112159798 AACATTAAAA
112159808 ATATATA-AT
1 ATATATACAT
112159817 ATATATACAAT
1 ATATATAC-AT
112159828 ATATATACA-
1 ATATATACAT
*
112159837 ATATATTCAT
1 ATATATACAT
112159847 ATAT
1 ATAT
112159851 TTAGAAATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 15 0.50
10 5 0.17
11 10 0.33
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (10 bp):
ATATATACAT
Found at i:112159952 original size:21 final size:23
Alignment explanation
Indices: 112159909--112159981 Score: 69
Period size: 21 Copynumber: 3.2 Consensus size: 23
112159899 ATACGTACAT
* * *
112159909 ATATATATAATAATGGTGTTAGAG
1 ATATACAT-ATAATAGTATTAGAG
*
112159933 ATATACAT-T-ATAGTATTAGAA
1 ATATACATATAATAGTATTAGAG
* *
112159954 ATATACATATAATAGTATAAAAG
1 ATATACATATAATAGTATTAGAG
112159977 ATATA
1 ATATA
112159982 TAACTAATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
21 17 0.43
22 2 0.05
23 14 0.35
24 7 0.17
ACGTcount: A:0.49, C:0.03, G:0.12, T:0.36
Consensus pattern (23 bp):
ATATACATATAATAGTATTAGAG
Found at i:112159980 original size:23 final size:23
Alignment explanation
Indices: 112159933--112160032 Score: 79
Period size: 23 Copynumber: 4.4 Consensus size: 23
112159923 GGTGTTAGAG
*
112159933 ATATACAT-T-ATAGTATTAGAA
1 ATATACATATAATAGTATTAAAA
112159954 ATATACATATAATAGTA-TAAAA
1 ATATACATATAATAGTATTAAAA
* *
112159976 GATATATA-ACTAATAATATTAAAA
1 -ATATACATA-TAATAGTATTAAAA
112160000 TATATACATAATAATA-TA-TATAAA
1 -ATATACAT-ATAATAGTATTA-AAA
112160024 ATATA-ATAT
1 ATATACATAT
112160033 TAAAAACATA
Statistics
Matches: 66, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
21 10 0.15
22 8 0.12
23 26 0.39
24 16 0.24
25 5 0.08
26 1 0.02
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (23 bp):
ATATACATATAATAGTATTAAAA
Found at i:112160021 original size:38 final size:38
Alignment explanation
Indices: 112159988--112160073 Score: 111
Period size: 38 Copynumber: 2.2 Consensus size: 38
112159978 TATATAACTA
*
112159988 ATAATATTAAAATATATACATA-ATAATATATATAAAAT
1 ATAATATTAAAA-ACATACATACATAATATATATAAAAT
*
112160026 ATAATATTAAAAACATATATACATAATATATATGAAAAAT
1 ATAATATTAAAAACATACATACATAATATATAT--AAAAT
112160066 ATATATAT
1 ATA-ATAT
112160074 AATATAATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
37 7 0.17
38 23 0.55
40 8 0.19
41 4 0.10
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (38 bp):
ATAATATTAAAAACATACATACATAATATATATAAAAT
Found at i:112160056 original size:13 final size:12
Alignment explanation
Indices: 112159986--112160105 Score: 88
Period size: 13 Copynumber: 10.0 Consensus size: 12
112159976 GATATATAAC
112159986 TAATAATAT-TA
1 TAATAATATATA
* *
112159997 AAAT-ATATACA
1 TAATAATATATA
112160008 TAATAATATATA
1 TAATAATATATA
112160020 TAA-AATATAATA
1 TAATAATAT-ATA
* *
112160032 TTAAAAACATATA
1 -TAATAATATATA
112160045 TACATAATATATA
1 TA-ATAATATATA
*
112160058 TGAAAAATATATA
1 T-AATAATATATA
112160071 T-ATAATATA-A
1 TAATAATATATA
* * *
112160081 TATTAAAATATT
1 TAATAATATATA
112160093 TACATAATATATA
1 TA-ATAATATATA
112160106 CATATTAGGA
Statistics
Matches: 84, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
10 6 0.07
11 25 0.30
12 16 0.19
13 32 0.38
14 5 0.06
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (12 bp):
TAATAATATATA
Found at i:112160067 original size:24 final size:24
Alignment explanation
Indices: 112159998--112160103 Score: 97
Period size: 24 Copynumber: 4.2 Consensus size: 24
112159988 ATAATATTAA
* * * *
112159998 AATATATACATAATAATATATATAA
1 AATATA-ATATAAAAATATATACAT
112160023 AATATAATATTAAAAACATATATACAT
1 AATATAATA-T-AAAA-ATATATACAT
*
112160050 AATAT-ATATGAAAAATATATATAT
1 AATATAATAT-AAAAATATATACAT
* *
112160074 AATATAATATTAAAATATTTACAT
1 AATATAATATAAAAATATATACAT
112160098 AATATA
1 AATATA
112160104 TACATATTAG
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
24 33 0.49
25 16 0.24
26 6 0.09
27 13 0.19
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (24 bp):
AATATAATATAAAAATATATACAT
Found at i:112160107 original size:11 final size:11
Alignment explanation
Indices: 112159998--112160109 Score: 54
Period size: 11 Copynumber: 10.1 Consensus size: 11
112159988 ATAATATTAA
112159998 AATATATACAT
1 AATATATACAT
*
112160009 AATAATATATAT
1 AAT-ATATACAT
112160021 AA-A-AT--AT
1 AATATATACAT
* *
112160028 AATAT-TAAAA
1 AATATATACAT
112160038 ACATATATACAT
1 A-ATATATACAT
* *
112160050 AATATATATGAAA
1 AATATATA--CAT
*
112160063 AATATATATAT
1 AATATATACAT
* *
112160074 AATATAATATTAA
1 AATAT-ATA-CAT
*
112160087 AATATTTACAT
1 AATATATACAT
112160098 AATATATACAT
1 AATATATACAT
112160109 A
1 A
112160110 TTAGGAATAA
Statistics
Matches: 77, Mismatches: 13, Indels: 22
0.69 0.12 0.20
Matches are distributed among these distances:
7 4 0.05
8 2 0.03
9 2 0.03
10 3 0.04
11 32 0.42
12 18 0.23
13 16 0.21
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (11 bp):
AATATATACAT
Found at i:112160157 original size:12 final size:12
Alignment explanation
Indices: 112160140--112160164 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
112160130 ATAATAATGC
112160140 TACATAAATATA
1 TACATAAATATA
112160152 TACATAAATATA
1 TACATAAATATA
112160164 T
1 T
112160165 TAAAAACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (12 bp):
TACATAAATATA
Found at i:112160279 original size:13 final size:13
Alignment explanation
Indices: 112160239--112160281 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
112160229 TGAAATATAA
*
112160239 AAAGTAAATATAAT
1 AAAGT-AATAAAAT
*
112160253 AAAGATATTAAAAT
1 AAAG-TAATAAAAT
112160267 AAAGTAATAAAAT
1 AAAGTAATAAAAT
112160280 AA
1 AA
112160282 CACCATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 10 0.40
14 14 0.56
15 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (13 bp):
AAAGTAATAAAAT
Found at i:112160391 original size:7 final size:6
Alignment explanation
Indices: 112160372--112160412 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
112160362 TAATGGCGAC
* *
112160372 AATAAA AATAAA AATAAA AATTAAA AATAAA GATAAC AATA
1 AATAAA AATAAA AATAAA AA-TAAA AATAAA AATAAA AATA
112160413 CTAATGAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (6 bp):
AATAAA
Found at i:112162370 original size:85 final size:86
Alignment explanation
Indices: 112162226--112162639 Score: 602
Period size: 86 Copynumber: 4.8 Consensus size: 86
112162216 GACTTTTGAT
* *
112162226 AAAAACAGAATTTGAAAATACCTCAGCATGTCTTGAAGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTT
*
112162291 GATTTTTGA-AACATAAATTG
66 GATTTTTGACAACAGAAATTG
** * * * *
112162311 AAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTT
112162376 GA-TTTTGACGAACAGAAATTG
66 GATTTTTGAC-AACAGAAATTG
* *
112162397 AAGAACAGAAATTGAAAATACCTCAGCATGTCTTGAAGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTT
*
112162462 GATTTTTGA-AACATAAATTG
66 GATTTTTGACAACAGAAATTG
* * * *
112162482 AAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTT
*
112162547 GA-TTTTGACGAACAGAAATTC
66 GATTTTTGAC-AACAGAAATTG
* *
112162568 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATGTGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTT
*
112162633 AATTTTT
66 GATTTTT
112162640 TTGAAATACA
Statistics
Matches: 290, Mismatches: 33, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
84 12 0.04
85 130 0.45
86 138 0.48
87 10 0.03
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (86 bp):
AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTT
GATTTTTGACAACAGAAATTG
Found at i:112162402 original size:14 final size:14
Alignment explanation
Indices: 112162380--112162412 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
112162370 TGAGTTGATT
*
112162380 TTGACGAACAGAAA
1 TTGAAGAACAGAAA
112162394 TTGAAGAACAGAAA
1 TTGAAGAACAGAAA
112162408 TTGAA
1 TTGAA
112162413 AATACCTCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.09, G:0.21, T:0.18
Consensus pattern (14 bp):
TTGAAGAACAGAAA
Found at i:112162514 original size:171 final size:171
Alignment explanation
Indices: 112162226--112162639 Score: 747
Period size: 171 Copynumber: 2.4 Consensus size: 171
112162216 GACTTTTGAT
*
112162226 AAAAACAGAATTTGAAAATACCTCAGCATGTCTTGAAGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAAGCTCAACTCACTTCTCGCAATATGAGTT
*
112162291 GATTTTTGAAACATAAATTGAAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT
66 GATTTTTGAAACATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT
* *
112162356 CACCTCTCGTAATATGAGTTGATTTTGACGAACAGAAATTG
131 CACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTC
*
112162397 AAGAACAGAAATTGAAAATACCTCAGCATGTCTTGAAGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAAGCTCAACTCACTTCTCGCAATATGAGTT
112162462 GATTTTTGAAACATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT
66 GATTTTTGAAACATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT
112162527 CACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTC
131 CACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTC
* * *
112162568 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATGTGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAAGCTCAACTCACTTCTCGCAATATGAGTT
*
112162633 AATTTTT
66 GATTTTT
112162640 TTGAAATACA
Statistics
Matches: 233, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
171 233 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (171 bp):
AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAAGCTCAACTCACTTCTCGCAATATGAGTT
GATTTTTGAAACATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTC
Found at i:112162673 original size:33 final size:33
Alignment explanation
Indices: 112162631--112162698 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
112162621 GCAATGTGAG
112162631 TTAATTTTTTTGAAATACAGAAATCGAAAATAC
1 TTAATTTTTTTGAAATACAGAAATCGAAAATAC
112162664 TTAATTTTTTTGAAATACAGAAATCGAAAATAC
1 TTAATTTTTTTGAAATACAGAAATCGAAAATAC
112162697 TT
1 TT
112162699 CAGCATGTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (33 bp):
TTAATTTTTTTGAAATACAGAAATCGAAAATAC
Found at i:112163614 original size:44 final size:44
Alignment explanation
Indices: 112163540--112163656 Score: 157
Period size: 44 Copynumber: 2.7 Consensus size: 44
112163530 TCATTAGAAT
* * * *
112163540 GCCCTTTC-GGGTTTTCATCCTAATCCTTTGTGTTAATCAAGAC
1 GCCCCTTCTGGGTTTTCATCTTGATCTTTTGTGTTAATCAAGAC
*
112163583 GCCCCTTCTGGGTTTTCATCTTGATCTTTTGTGTTAATCAAGAT
1 GCCCCTTCTGGGTTTTCATCTTGATCTTTTGTGTTAATCAAGAC
*
112163627 G-CCCTTTTCGGGTTTTCATCTTGATCTTTT
1 GCCCCTTCT-GGGTTTTCATCTTGATCTTTT
112163657 TTTTAGGCAT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
43 13 0.20
44 53 0.80
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (44 bp):
GCCCCTTCTGGGTTTTCATCTTGATCTTTTGTGTTAATCAAGAC
Found at i:112166484 original size:18 final size:18
Alignment explanation
Indices: 112166463--112166743 Score: 149
Period size: 18 Copynumber: 15.2 Consensus size: 18
112166453 ACAATTATTA
112166463 ATTCAGTAACAGTCAGTT
1 ATTCAGTAACAGTCAGTT
* * *
112166481 ATTCGGTAACAATCAATT
1 ATTCAGTAACAGTCAGTT
* * **
112166499 ATTCAATAATAACCAGTT
1 ATTCAGTAACAGTCAGTT
112166517 ATTCAGTATCGATCAATTGATC-GATT
1 ATTCAGTA---A-C-A--G-TCAG-TT
* *
112166543 ATCCAGTAACAGTCAATT
1 ATTCAGTAACAGTCAGTT
* *
112166561 ATTCAGTAA-AATCAGAT
1 ATTCAGTAACAGTCAGTT
* *
112166578 ATTCAGTAACTATTAAGTT
1 ATTCAGTAAC-AGTCAGTT
* *
112166597 ATTCAGTAGCAGTCA-TCC
1 ATTCAGTAACAGTCAGT-T
* * *
112166615 ATTCAGTGACAATCAATT
1 ATTCAGTAACAGTCAGTT
* *
112166633 ATTCAGTAA-TGATCAATT
1 ATTCAGTAACAG-TCAGTT
* *
112166651 ATTCAGTAATATTCAGTT
1 ATTCAGTAACAGTCAGTT
*
112166669 ATTCAGTAACAGTCTA-AT
1 ATTCAGTAACAGTC-AGTT
* *
112166687 ATTCAATAACAGTCAATT
1 ATTCAGTAACAGTCAGTT
* *
112166705 ATCCAGTAACAGTCAATT
1 ATTCAGTAACAGTCAGTT
* *
112166723 ATTCAGTAATAATCAGTT
1 ATTCAGTAACAGTCAGTT
112166741 ATT
1 ATT
112166744 TTATACATTT
Statistics
Matches: 199, Mismatches: 46, Indels: 36
0.71 0.16 0.13
Matches are distributed among these distances:
17 16 0.08
18 150 0.75
19 17 0.09
21 2 0.01
22 1 0.01
23 2 0.01
25 1 0.01
26 10 0.05
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
ATTCAGTAACAGTCAGTT
Found at i:112166503 original size:36 final size:36
Alignment explanation
Indices: 112166463--112166743 Score: 183
Period size: 36 Copynumber: 7.6 Consensus size: 36
112166453 ACAATTATTA
* *
112166463 ATTCAGTAACAGTCAGTTATTCGGTAACAATCAATT
1 ATTCAGTAACAATCAGTTATTCAGTAACAATCAATT
* * * *
112166499 ATTCAATAATAACCAGTTATTCAGTATCGATCAATTGATCGATT
1 ATTCAGTAACAATCAGTTATTCAGTA---A-C-A---ATCAATT
* * *
112166543 ATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA-T
1 ATTCAGTAACAATCAGTTATTCAGTAACAATCA-ATT
* * * * *
112166578 ATTCAGTAACTATTAAGTTATTCAGTAGCAGTC-ATCC
1 ATTCAGTAAC-AATCAGTTATTCAGTAACAATCAAT-T
* * **
112166615 ATTCAGTGACAATCAATTATTCAGTAATGATCAATT
1 ATTCAGTAACAATCAGTTATTCAGTAACAATCAATT
* * *
112166651 ATTCAGTAATATTCAGTTATTCAGTAACAGTCTAA-T
1 ATTCAGTAACAATCAGTTATTCAGTAACAATC-AATT
* * * * *
112166687 ATTCAATAACAGTCAATTATCCAGTAACAGTCAATT
1 ATTCAGTAACAATCAGTTATTCAGTAACAATCAATT
*
112166723 ATTCAGTAATAATCAGTTATT
1 ATTCAGTAACAATCAGTTATT
112166744 TTATACATTT
Statistics
Matches: 183, Mismatches: 46, Indels: 32
0.70 0.18 0.12
Matches are distributed among these distances:
35 16 0.09
36 120 0.66
37 16 0.09
38 1 0.01
39 1 0.01
40 1 0.01
41 2 0.01
44 26 0.14
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (36 bp):
ATTCAGTAACAATCAGTTATTCAGTAACAATCAATT
Found at i:112166611 original size:54 final size:53
Alignment explanation
Indices: 112166540--112166737 Score: 197
Period size: 54 Copynumber: 3.7 Consensus size: 53
112166530 CAATTGATCG
*
112166540 ATTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGATATTCAGTAACTATTA
1 ATTATCCAGTAACAGTCAATTATTCAGTAACAATCA-ATATTCAGTAACTATCA
* * * *
112166593 AGTTATTCAGTAGCAGTC-ATCCATTCAGTGACAATCAATTATTCAGTAA-TGATCA
1 A-TTATCCAGTAACAGTCAAT-TATTCAGTAACAATCAA-TATTCAGTAACT-ATCA
* * * * * *
112166648 ATTATTCAGTAATATTCAGTTATTCAGTAACAGTCTAATATTCAATAAC-AGTCA
1 ATTATCCAGTAACAGTCAATTATTCAGTAACAATC-AATATTCAGTAACTA-TCA
*
112166702 ATTATCCAGTAACAGTCAATTATTCAGTAATAATCA
1 ATTATCCAGTAACAGTCAATTATTCAGTAACAATCA
112166738 GTTATTTTAT
Statistics
Matches: 117, Mismatches: 19, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
53 5 0.04
54 90 0.77
55 22 0.19
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (53 bp):
ATTATCCAGTAACAGTCAATTATTCAGTAACAATCAATATTCAGTAACTATCA
Found at i:112166672 original size:72 final size:70
Alignment explanation
Indices: 112166546--112166743 Score: 238
Period size: 72 Copynumber: 2.8 Consensus size: 70
112166536 ATCGATTATC
* *
112166546 CAGTAACAGTCAATTATTCAGTAAAATCAGA-TATTCAGTAACTATTAAGTTATTCAGTAGCAGT
1 CAGTAACAGTCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTCAGTTATTCAGTAACAGT
112166610 C-ATCCATT
64 CAAT--ATT
* * *
112166618 CAGTGACAATCAATTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTAACAGTC
1 CAGTAACAGTCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATTCAGTAACAGTC
112166683 TAATATT
65 -AATATT
* * * *
112166690 CAATAACAGTCAATTATCCAGTAACAGTCAATTATTCAGTAATAATCAGTTATT
1 CAGTAACAGTCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATT
112166744 TTATACATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
72 93 0.85
73 14 0.13
74 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (70 bp):
CAGTAACAGTCAATTATTCAGTAAAATCAATTATTCAGTAATATTCAGTTATTCAGTAACAGTCA
ATATT
Found at i:112166968 original size:45 final size:45
Alignment explanation
Indices: 112166911--112167105 Score: 309
Period size: 45 Copynumber: 4.3 Consensus size: 45
112166901 ATCCGGAATA
* * * *
112166911 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCG
1 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
112166956 GTAATGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
112167001 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* *
112167046 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* *
112167091 GTAACAGTAGCAGTA
1 GTAACGGTAACAGTA
112167106 GCGGTAACAA
Statistics
Matches: 142, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 142 1.00
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.19
Consensus pattern (45 bp):
GTAACGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
Found at i:112167525 original size:5 final size:5
Alignment explanation
Indices: 112167514--112167570 Score: 78
Period size: 5 Copynumber: 11.2 Consensus size: 5
112167504 AATTAATCAT
* * *
112167514 AATTC CATTC CATTC AATTC CATTC AATTC AATTC AATTC AATTC AATTC
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC
112167564 AAATTC A
1 -AATTC A
112167571 CTTTTCCACT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
5 42 0.89
6 5 0.11
ACGTcount: A:0.37, C:0.25, G:0.00, T:0.39
Consensus pattern (5 bp):
AATTC
Found at i:112167757 original size:25 final size:26
Alignment explanation
Indices: 112167696--112167758 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 26
112167686 CTTTACACAT
*
112167696 ATTCATAATTTATTTTATTTTTATTCA
1 ATTCA-AATTTATTTTATTTTTATCCA
* *
112167723 ATTCATATTTA-TTTATTTATTGTCCA
1 ATTCAAATTTATTTTATTT-TTATCCA
112167749 A-TCAAATTTA
1 ATTCAAATTTA
112167759 AAATCACTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 15 0.48
26 11 0.35
27 5 0.16
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.57
Consensus pattern (26 bp):
ATTCAAATTTATTTTATTTTTATCCA
Found at i:112167953 original size:21 final size:21
Alignment explanation
Indices: 112167928--112167988 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
112167918 TTCAATTTCA
112167928 ATTCAATAA-CAATTCACATAT
1 ATTCAATAATCAATTCA-ATAT
112167949 ATTC-ATAAATCAATTCAATAT
1 ATTCAAT-AATCAATTCAATAT
* * *
112167970 AATCAATATTCAATCCAAT
1 ATTCAATAATCAATTCAAT
112167989 TCATATAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 23 0.68
22 9 0.26
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (21 bp):
ATTCAATAATCAATTCAATAT
Found at i:112173051 original size:46 final size:46
Alignment explanation
Indices: 112172986--112173259 Score: 374
Period size: 46 Copynumber: 6.0 Consensus size: 46
112172976 TTATCTTTGA
* * * * * *
112172986 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* **
112173032 CATGTTGCCATGGTATCTTTCAACCATGGCCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
112173078 CA-GATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATG-TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
112173124 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTGCACGTTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
112173170 CATGTTGCTATGGTATCTTTCAACCATGGTCTTACACATTTC-TAAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT-AT
*
112173216 CATGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
112173260 TTCAGAAAGC
Statistics
Matches: 205, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
45 6 0.03
46 197 0.96
47 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Done.