Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 338 of 362
Found at i:112455854 original size:50 final size:51
Alignment explanation
Indices: 112455777--112455905 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
112455767 GACCATGGAA
* * *
112455777 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATTAA-GGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAATGG-CAAATG
112455828 A-AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAATGGCAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAATGGCAAATG
* * *
112455878 ACAACTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCAGCTAC
112455906 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 44 0.63
51 26 0.37
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAATGGCAAATG
Found at i:112455921 original size:31 final size:31
Alignment explanation
Indices: 112455883--112456077 Score: 291
Period size: 31 Copynumber: 6.3 Consensus size: 31
112455873 AAATGACAAC
*
112455883 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
* *
112455914 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
*
112455945 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
* *
112455976 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
*
112456007 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
* * *
112456038 TGAAAAATTGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
*
112456069 TGAATAGTG
1 TGAAAAGTG
112456078 AATAGTGGTA
Statistics
Matches: 149, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 149 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
Found at i:112456198 original size:47 final size:48
Alignment explanation
Indices: 112456129--112456254 Score: 159
Period size: 47 Copynumber: 2.7 Consensus size: 48
112456119 CAAGTGATTT
* *
112456129 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
112456176 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* *
112456224 C-GTGTAAGACCATAGT-TGGGCTATGGCATCA
1 CTGTATAAGACCATA-TCTGGGATATGGCATCA
112456255 TTATGCAAAG
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
47 65 0.94
48 4 0.06
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:112457571 original size:40 final size:41
Alignment explanation
Indices: 112457499--112457585 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 41
112457489 TATAATCAAT
*
112457499 TTTTATTATATTTTTCAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAATATATTTTTCAATTTGTGTATTGTTTTAAGAATTG
* * * * *
112457540 TTTTAATATATTTTT-TATTTGTTTCTTGTTTTAATATTTG
1 TTTTAATATATTTTTCAATTTGTGTATTGTTTTAAGAATTG
112457580 TTTTAA
1 TTTTAA
112457586 ATGTATTTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 26 0.65
41 14 0.35
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.66
Consensus pattern (41 bp):
TTTTAATATATTTTTCAATTTGTGTATTGTTTTAAGAATTG
Found at i:112459198 original size:45 final size:45
Alignment explanation
Indices: 112459116--112459244 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 45
112459106 TAATCAGTAA
* * * *
112459116 CGGTAGCATTAACAGTAACAGTATTTAACACACAAAGTGCT-GAAT
1 CGGTAACAGTAACAGTAACAGTA-TTCACACATAAAGTGCTCGAAT
* *
112459161 CTGTAACAGTAACGGTAACAGTATTCGACACATAAAGTG-TCGAAT
1 CGGTAACAGTAACAGTAACAGTATTC-ACACATAAAGTGCTCGAAT
* *
112459206 CGGTAATAGTAACAGTAACAGTAGTCAGCACAT-AAGTGC
1 CGGTAACAGTAACAGTAACAGTATTCA-CACATAAAGTGC
112459245 CTGATTAGTA
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
44 9 0.13
45 61 0.87
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (45 bp):
CGGTAACAGTAACAGTAACAGTATTCACACATAAAGTGCTCGAAT
Found at i:112459805 original size:22 final size:24
Alignment explanation
Indices: 112459774--112459819 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
112459764 AATCTCTAGT
112459774 TTTTTCTTTTTCCCTTTTT-TCCC
1 TTTTTCTTTTTCCCTTTTTCTCCC
*
112459797 TTTTT-TTTTTCTCTTTTTCTCCC
1 TTTTTCTTTTTCCCTTTTTCTCCC
112459820 CTGTTTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTTTCTTTTTCCCTTTTTCTCCC
Found at i:112461880 original size:20 final size:21
Alignment explanation
Indices: 112461857--112461896 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
112461847 CACTTTATCT
112461857 ATTTTTGAAATTTTC-ATTTA
1 ATTTTTGAAATTTTCTATTTA
* *
112461877 ATTTTTTATATTTTCTATTT
1 ATTTTTGAAATTTTCTATTT
112461897 TTTTATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (21 bp):
ATTTTTGAAATTTTCTATTTA
Found at i:112461900 original size:17 final size:18
Alignment explanation
Indices: 112461878--112461911 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
112461868 TTTCATTTAA
112461878 TTTTTTATAT-TTTCTAT
1 TTTTTTATATATTTCTAT
112461895 TTTTTTATATATTTCTA
1 TTTTTTATATATTTCTA
112461912 AATTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTATATATTTCTAT
Found at i:112461917 original size:19 final size:17
Alignment explanation
Indices: 112461875--112461917 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
112461865 AATTTTCATT
112461875 TAATTTTTTATATTTTC
1 TAATTTTTTATATTTTC
*
112461892 TATTTTTTTATATATTTC
1 TAATTTTTTATAT-TTTC
*
112461910 TAAATTTT
1 TAATTTTT
112461918 AAAAAGATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (17 bp):
TAATTTTTTATATTTTC
Found at i:112462069 original size:13 final size:13
Alignment explanation
Indices: 112462051--112462103 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
112462041 GTTTTGGCAA
112462051 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
112462064 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
**
112462077 TGC-TGCGAAAAAG
1 TGCTTTTG-AAAAG
112462090 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
112462103 T
1 T
112462104 TTGGTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 2 0.06
13 30 0.88
14 2 0.06
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.34
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:112465484 original size:13 final size:13
Alignment explanation
Indices: 112465452--112465483 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
112465442 TAATATTTTA
112465452 TTTTTTTCTAGGT
1 TTTTTTTCTAGGT
112465465 TTTTTTTCTA-GT
1 TTTTTTTCTAGGT
112465477 TTTTTTT
1 TTTTTTT
112465484 TTTAATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.06, C:0.06, G:0.09, T:0.78
Consensus pattern (13 bp):
TTTTTTTCTAGGT
Found at i:112472067 original size:18 final size:19
Alignment explanation
Indices: 112472044--112472080 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
112472034 TTTAAAAATA
112472044 TATAAA-AT-TTGAAATTTT
1 TATAAACATGTTG-AATTTT
112472062 TATAAACATGTTGAATTTT
1 TATAAACATGTTGAATTTT
112472081 AAAAAGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
19 8 0.47
20 3 0.18
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.49
Consensus pattern (19 bp):
TATAAACATGTTGAATTTT
Found at i:112475492 original size:15 final size:16
Alignment explanation
Indices: 112475472--112475508 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
112475462 TAGTCCTTTA
112475472 AAATTATAAAAAT-AT
1 AAATTATAAAAATAAT
*
112475487 AAATTATTAAAATAAT
1 AAATTATAAAAATAAT
112475503 AAATTA
1 AAATTA
112475509 CTCATCCCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATTATAAAAATAAT
Found at i:112479031 original size:15 final size:15
Alignment explanation
Indices: 112479011--112479041 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
112479001 TATGTCTAGT
112479011 TCCTCTCTCTGTAAA
1 TCCTCTCTCTGTAAA
112479026 TCCTCTCTCTGTAAA
1 TCCTCTCTCTGTAAA
112479041 T
1 T
112479042 ACAACATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.32, G:0.06, T:0.42
Consensus pattern (15 bp):
TCCTCTCTCTGTAAA
Found at i:112487900 original size:35 final size:35
Alignment explanation
Indices: 112487854--112487944 Score: 155
Period size: 35 Copynumber: 2.6 Consensus size: 35
112487844 TCAGCAGTGA
112487854 TAGTTCCAATTGTGCTTCTCTATGATAGATAAAGT
1 TAGTTCCAATTGTGCTTCTCTATGATAGATAAAGT
* * *
112487889 TAGTTTCAATTGTGCTTCTTTTTGATAGATAAAGT
1 TAGTTCCAATTGTGCTTCTCTATGATAGATAAAGT
112487924 TAGTTCCAATTGTGCTTCTCT
1 TAGTTCCAATTGTGCTTCTCT
112487945 TGGATAAATA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 51 1.00
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.45
Consensus pattern (35 bp):
TAGTTCCAATTGTGCTTCTCTATGATAGATAAAGT
Found at i:112487956 original size:35 final size:34
Alignment explanation
Indices: 112487854--112487956 Score: 152
Period size: 35 Copynumber: 2.9 Consensus size: 34
112487844 TCAGCAGTGA
112487854 TAGTTCCAATTGTGCTTCTCTATGATAGATAAAGT
1 TAGTTCCAATTGTGCTTCTCT-TGATAGATAAAGT
* *
112487889 TAGTTTCAATTGTGCTTCTTTTTGATAGATAAAGT
1 TAGTTCCAATTGTGCTTC-TCTTGATAGATAAAGT
*
112487924 TAGTTCCAATTGTGCTTCTCTTGGATAAATAAA
1 TAGTTCCAATTGTGCTTCTCTT-GATAGATAAA
112487957 TTTGGAGATA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
34 3 0.05
35 56 0.92
36 2 0.03
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.43
Consensus pattern (34 bp):
TAGTTCCAATTGTGCTTCTCTTGATAGATAAAGT
Found at i:112500096 original size:28 final size:25
Alignment explanation
Indices: 112500059--112500121 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
112500049 CAAAGAAATA
*
112500059 TAATAATAAAT--TTAAAATTTATAT
1 TAATAATAAATAAATAAAA-TTATAT
* *
112500083 TAATATTAAATAAATATAATTATAT
1 TAATAATAAATAAATAAAATTATAT
*
112500108 TAATAATAATTAAA
1 TAATAATAAATAAA
112500122 AAATTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 10 0.31
25 18 0.56
26 4 0.12
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
TAATAATAAATAAATAAAATTATAT
Found at i:112502972 original size:31 final size:31
Alignment explanation
Indices: 112502897--112502972 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 31
112502887 TTAGAGGATT
* * *
112502897 TAATTAAAATTTTCAAAACTTTTTAGATAGC
1 TAATTAAAATTTTCAAAACATTTGAGATACC
*
112502928 TCAATTAAAATTTTCAAAAGATTTGAGA-ACC
1 T-AATTAAAATTTTCAAAACATTTGAGATACC
112502959 TAATTGAAAATTTT
1 TAATT-AAAATTTT
112502973 GGAAGTGTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 4 0.10
31 12 0.31
32 23 0.59
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.39
Consensus pattern (31 bp):
TAATTAAAATTTTCAAAACATTTGAGATACC
Found at i:112514746 original size:21 final size:21
Alignment explanation
Indices: 112514720--112514760 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
112514710 ATCTGCTCAA
* *
112514720 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
112514741 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
112514761 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:112519201 original size:31 final size:30
Alignment explanation
Indices: 112519159--112519220 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 30
112519149 ACCCTTTTTG
112519159 TAACAAAAAAAATTATATCT-ACATTTTAAT
1 TAACAAAAAAAATTATAT-TGACATTTTAAT
112519189 TAACTAAAAAAAATTATATTGACATTTTAAT
1 TAAC-AAAAAAAATTATATTGACATTTTAAT
112519220 T
1 T
112519221 GCAATAGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.39
Consensus pattern (30 bp):
TAACAAAAAAAATTATATTGACATTTTAAT
Found at i:112520197 original size:25 final size:25
Alignment explanation
Indices: 112520151--112520202 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
112520141 GTTGAACACT
* ** *
112520151 AAAATAATTTAAAAAACTAGAGCTA
1 AAAAAAATTTAAAAAAAAAGAGATA
112520176 AAAAAAATTTAAAAAAAAAGAGATA
1 AAAAAAATTTAAAAAAAAAGAGATA
112520201 AA
1 AA
112520203 TATTAAACTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.69, C:0.04, G:0.08, T:0.19
Consensus pattern (25 bp):
AAAAAAATTTAAAAAAAAAGAGATA
Found at i:112523884 original size:13 final size:13
Alignment explanation
Indices: 112523866--112523893 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
112523856 CACTTACTTA
112523866 AACCCTTTATTCC
1 AACCCTTTATTCC
112523879 AACCCTTTATTCC
1 AACCCTTTATTCC
112523892 AA
1 AA
112523894 GAAAGTTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.36, G:0.00, T:0.36
Consensus pattern (13 bp):
AACCCTTTATTCC
Found at i:112526019 original size:104 final size:98
Alignment explanation
Indices: 112525889--112526113 Score: 240
Period size: 99 Copynumber: 2.2 Consensus size: 98
112525879 AAAATAAATA
* * * *
112525889 ATTAAATTTATATTAATATTAAATAATATAACATAAAATAAAATTTTATTTTTTATAAAATGATA
1 ATTAAA-TTATATTAATAATAAATAATAAAACAT--AATAAAA--TT-TTTTATATAAAATAATA
112525954 ATTAAAA-TATTATAATCATATG-CAATAAAATTTAAATATTT
60 ATTAAAATTA-TAT-AT-ATATGACAAT-AAATTTAAATATTT
* * *
112525995 -TTAAATTATATTAATAATAAATAATAAAACATATTTAAATTTTTTATATTAAATAATAATTAAA
1 ATTAAATTATATTAATAATAAATAATAAAACATAATAAAATTTTTTATATAAAATAATAATTAAA
* *
112526059 ATTATATATTTATGACAATAAATTTATATATTT
66 ATTATATATATATGACAATAAATTTAAATATTT
112526092 ATTAAATTATTATATAATAATA
1 ATTAAATTA-TAT-TAATAATA
112526114 TCTAATAATA
Statistics
Matches: 105, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
97 17 0.16
98 14 0.13
99 27 0.26
100 12 0.11
102 5 0.05
104 25 0.24
105 5 0.05
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (98 bp):
ATTAAATTATATTAATAATAAATAATAAAACATAATAAAATTTTTTATATAAAATAATAATTAAA
ATTATATATATATGACAATAAATTTAAATATTT
Found at i:112527016 original size:2 final size:2
Alignment explanation
Indices: 112527009--112527039 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
112526999 CTTCTGAATC
112527009 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
112527040 TCTTTTAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:112527696 original size:18 final size:19
Alignment explanation
Indices: 112527665--112527706 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
112527655 AAATCATGTA
112527665 TGTTTTATTTATTTAAAAT
1 TGTTTTATTTATTTAAAAT
* *
112527684 TGTTTTA-TTATTTTAAGT
1 TGTTTTATTTATTTAAAAT
112527702 TGTTT
1 TGTTT
112527707 ATGTCCCCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.67
Consensus pattern (19 bp):
TGTTTTATTTATTTAAAAT
Found at i:112529996 original size:22 final size:20
Alignment explanation
Indices: 112529971--112530010 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
112529961 AAATTTAATC
112529971 AAAGACATTATATATAATATAA
1 AAAGACA-TATAT-TAATATAA
*
112529993 AAAGATATATATTAATAT
1 AAAGACATATATTAATAT
112530011 CATTTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (20 bp):
AAAGACATATATTAATATAA
Found at i:112533339 original size:22 final size:21
Alignment explanation
Indices: 112533301--112533367 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 21
112533291 GTTTACTTAC
*
112533301 TTAAGTTTTATATTATTTATT
1 TTAAGTTTTTTATTATTTATT
112533322 TTAAGTTGTTTTATTATTTATT
1 TTAAGTT-TTTTATTATTTATT
112533344 TTAAGTTTTATATATTATTTATT
1 TTAAGTTTT-T-TATTATTTATT
112533367 T
1 T
112533368 CATACATTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
21 9 0.21
22 21 0.50
23 12 0.29
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (21 bp):
TTAAGTTTTTTATTATTTATT
Found at i:112533556 original size:26 final size:28
Alignment explanation
Indices: 112533503--112533564 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
112533493 TTAAATTGAT
*
112533503 TTATATATTATTTACTTCAAAATTTGTTC
1 TTATATATTATTTACTTC-AAATGTGTTC
*
112533532 TTATATATTATTTACTTC-AA-GTGTTT
1 TTATATATTATTTACTTCAAATGTGTTC
112533558 TTATATA
1 TTATATA
112533565 ATGATTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 11 0.35
27 2 0.06
29 18 0.58
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (28 bp):
TTATATATTATTTACTTCAAATGTGTTC
Found at i:112536120 original size:31 final size:31
Alignment explanation
Indices: 112536058--112536127 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
112536048 ATCCCTATAC
* **
112536058 TTTAATTTGATCAATTTTAGTCTTTAAATTT
1 TTTAAATTGATCAATTTTAGTCCCTAAATTT
* * *
112536089 TTTAAATTGGTCATTTTTAGTCCCTATATTT
1 TTTAAATTGATCAATTTTAGTCCCTAAATTT
*
112536120 TTCAAATT
1 TTTAAATT
112536128 TTAAAATTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.56
Consensus pattern (31 bp):
TTTAAATTGATCAATTTTAGTCCCTAAATTT
Found at i:112544311 original size:31 final size:32
Alignment explanation
Indices: 112544273--112544343 Score: 92
Period size: 31 Copynumber: 2.2 Consensus size: 32
112544263 TTTTGTTTTA
112544273 TTTTTTCTCATTT-TCCAATGAATGCAGTT-AT
1 TTTTTTCT-ATTTGTCCAATGAATGCAGTTGAT
* *
112544304 TTTTTTCTTTTTGTTCAATGAATGCAGTTGAT
1 TTTTTTCTATTTGTCCAATGAATGCAGTTGAT
*
112544336 TTCTTTCT
1 TTTTTTCT
112544344 TTGATCAGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 3 0.09
31 23 0.66
32 9 0.26
ACGTcount: A:0.18, C:0.14, G:0.11, T:0.56
Consensus pattern (32 bp):
TTTTTTCTATTTGTCCAATGAATGCAGTTGAT
Found at i:112544406 original size:22 final size:21
Alignment explanation
Indices: 112544372--112544414 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
112544362 GAGTAGAAAT
112544372 TTGATTTTTAAAAACAAATAC
1 TTGATTTTTAAAAACAAATAC
112544393 TTGATTTTTAAAAACAAATAC
1 TTGATTTTTAAAAACAAATAC
112544414 T
1 T
112544415 ACTTTGCAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.40
Consensus pattern (21 bp):
TTGATTTTTAAAAACAAATAC
Found at i:112550604 original size:47 final size:48
Alignment explanation
Indices: 112550523--112550614 Score: 141
Period size: 47 Copynumber: 1.9 Consensus size: 48
112550513 GTTTGAATTC
*
112550523 TCAACATTCCACCCAACAACCACCATAATTTTAGATTCCCAAGTAATA
1 TCAACATTCCAACCAACAACCACCATAATTTTAGATTCCCAAGTAATA
* * *
112550571 TCAAGATTCCAACCAACCACC-CTATAATTTTAGATTCCCAAGTA
1 TCAACATTCCAACCAACAACCACCATAATTTTAGATTCCCAAGTA
112550615 TAAAATATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 22 0.55
48 18 0.45
ACGTcount: A:0.38, C:0.30, G:0.05, T:0.26
Consensus pattern (48 bp):
TCAACATTCCAACCAACAACCACCATAATTTTAGATTCCCAAGTAATA
Found at i:112555747 original size:13 final size:13
Alignment explanation
Indices: 112555731--112555759 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
112555721 TTTTTCTGCT
112555731 TTTCTTTTTTCTA
1 TTTCTTTTTTCTA
112555744 TTTCTTTTTTCTA
1 TTTCTTTTTTCTA
112555757 TTT
1 TTT
112555760 TGAGTGGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTCTTTTTTCTA
Found at i:112555881 original size:8 final size:8
Alignment explanation
Indices: 112555868--112555892 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
112555858 GTCCTTTAGA
112555868 AATATAAT
1 AATATAAT
112555876 AATATAAT
1 AATATAAT
112555884 AATATAAT
1 AATATAAT
112555892 A
1 A
112555893 TACTATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AATATAAT
Found at i:112555924 original size:22 final size:23
Alignment explanation
Indices: 112555891--112555937 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
112555881 AATAATATAA
*
112555891 TATACTATTTTT-TTATTAATATT
1 TATACTATTTTTATAATTAA-ATT
112555914 TATA-TATTTTTATAATTAAATT
1 TATACTATTTTTATAATTAAATT
112555936 TA
1 TA
112555938 AATGGAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (23 bp):
TATACTATTTTTATAATTAAATT
Found at i:112569388 original size:31 final size:31
Alignment explanation
Indices: 112569350--112569437 Score: 167
Period size: 31 Copynumber: 2.8 Consensus size: 31
112569340 TGCATTAGCA
*
112569350 TTTCTGAACTAAAGGATTGAATTTTCTTATG
1 TTTCTGAACTAAAAGATTGAATTTTCTTATG
112569381 TTTCTGAACTAAAAGATTGAATTTTCTTATG
1 TTTCTGAACTAAAAGATTGAATTTTCTTATG
112569412 TTTCTGAACTAAAAGATTGAATTTTC
1 TTTCTGAACTAAAAGATTGAATTTTC
112569438 CTATATTACT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 56 1.00
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (31 bp):
TTTCTGAACTAAAAGATTGAATTTTCTTATG
Found at i:112570531 original size:19 final size:19
Alignment explanation
Indices: 112570507--112570545 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
112570497 TCAGAATCGG
112570507 TACTTTAATTGGTTTTCGA
1 TACTTTAATTGGTTTTCGA
112570526 TACTTTAATTGGTTTTCGA
1 TACTTTAATTGGTTTTCGA
112570545 T
1 T
112570546 TCAATTGGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (19 bp):
TACTTTAATTGGTTTTCGA
Found at i:112570553 original size:16 final size:18
Alignment explanation
Indices: 112570508--112570554 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
112570498 CAGAATCGGT
*
112570508 ACTTTAATTGGTTTTCGA
1 ACTTCAATTGGTTTTCGA
*
112570526 TACTTTAATTGGTTTTCG-
1 -ACTTCAATTGGTTTTCGA
112570544 A-TTCAATTGGT
1 ACTTCAATTGGT
112570555 CTGATTTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 9 0.33
17 1 0.04
19 17 0.63
ACGTcount: A:0.21, C:0.11, G:0.17, T:0.51
Consensus pattern (18 bp):
ACTTCAATTGGTTTTCGA
Found at i:112572474 original size:19 final size:20
Alignment explanation
Indices: 112572447--112572488 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
112572437 ATCAAAGAGT
112572447 AAATCGATCCTTCTATTA-A
1 AAATCGATCCTTCTATTACA
*
112572466 AAATTGATCCTTCTATTACA
1 AAATCGATCCTTCTATTACA
112572486 AAA
1 AAA
112572489 AGATAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (20 bp):
AAATCGATCCTTCTATTACA
Found at i:112600478 original size:26 final size:27
Alignment explanation
Indices: 112600434--112600493 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
112600424 AATTGAGAAC
*
112600434 GAAAATAATAATTTAAATATTAAAATT
1 GAAAATAATAACTTAAATATTAAAATT
*
112600461 GAAAA-AATAACTTCAATATTAAAA-T
1 GAAAATAATAACTTAAATATTAAAATT
*
112600486 AAAAATAA
1 GAAAATAA
112600494 GTCTAATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 5 0.17
26 19 0.66
27 5 0.17
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (27 bp):
GAAAATAATAACTTAAATATTAAAATT
Found at i:112602573 original size:14 final size:14
Alignment explanation
Indices: 112602554--112602587 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
112602544 AAAAAAAAAC
112602554 AAAAAAGCTATTAA
1 AAAAAAGCTATTAA
*
112602568 AAAAAAGCTGTTAA
1 AAAAAAGCTATTAA
112602582 AAAAAA
1 AAAAAA
112602588 CCATTTTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.68, C:0.06, G:0.09, T:0.18
Consensus pattern (14 bp):
AAAAAAGCTATTAA
Found at i:112602662 original size:25 final size:24
Alignment explanation
Indices: 112602607--112602663 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
112602597 CTATTATATT
*
112602607 TTTTTCTCTTCTCTTTCTCCTACC
1 TTTTTCTCTTCTATTTCTCCTACC
*
112602631 TTCTTTCTCTT-TATTCTCTCCTTCTC
1 TT-TTTCTCTTCTATT-TCTCCTAC-C
112602657 TTTTTCT
1 TTTTTCT
112602664 TTTTCTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 5 0.18
25 20 0.71
26 3 0.11
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTTTCTCTTCTATTTCTCCTACC
Found at i:112603446 original size:9 final size:9
Alignment explanation
Indices: 112603432--112603463 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
112603422 AACTTGGTGC
112603432 ATTTTGTTT
1 ATTTTGTTT
112603441 ATTTTGTTT
1 ATTTTGTTT
112603450 ATTTTGTTT
1 ATTTTGTTT
112603459 ATTTT
1 ATTTT
112603464 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:112603574 original size:23 final size:23
Alignment explanation
Indices: 112603541--112603589 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
112603531 ATTGAAACAA
*
112603541 CATAATGATAGCTAATATGCTTT
1 CATAATAATAGCTAATATGCTTT
112603564 CATAATAATAGCTAATATGCTTT
1 CATAATAATAGCTAATATGCTTT
112603587 CAT
1 CAT
112603590 CTTTTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (23 bp):
CATAATAATAGCTAATATGCTTT
Found at i:112607920 original size:9 final size:9
Alignment explanation
Indices: 112607906--112607938 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
112607896 CAACTTGGTG
112607906 TATTTTGTT
1 TATTTTGTT
112607915 TATTTTGTT
1 TATTTTGTT
112607924 TATTTTGTT
1 TATTTTGTT
112607933 TATTTT
1 TATTTT
112607939 TAATATTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (9 bp):
TATTTTGTT
Found at i:112608049 original size:23 final size:23
Alignment explanation
Indices: 112608016--112608064 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
112608006 ATTGAAACAA
*
112608016 CATAATGATAGCTAATATGCTTT
1 CATAATAATAGCTAATATGCTTT
112608039 CATAATAATAGCTAATATGCTTT
1 CATAATAATAGCTAATATGCTTT
112608062 CAT
1 CAT
112608065 CTTTTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (23 bp):
CATAATAATAGCTAATATGCTTT
Found at i:112610402 original size:26 final size:27
Alignment explanation
Indices: 112610355--112610412 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
112610345 GAAGTACTGC
* *
112610355 ACTGGTGACTATGTCACGCTTACTATT
1 ACTGGTGACTATGCCACACTTACTATT
* *
112610382 ACTGGTGGCT-TGCCACACTTACTGTT
1 ACTGGTGACTATGCCACACTTACTATT
112610408 ACTGG
1 ACTGG
112610413 CAGCTACGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
ACTGGTGACTATGCCACACTTACTATT
Found at i:112610433 original size:26 final size:26
Alignment explanation
Indices: 112610404--112610466 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
112610394 CCACACTTAC
*
112610404 TGTTACTGGCAGCTACGCTGCGTTAT
1 TGTTACTGGCAGCTACGCTGCGATAT
**
112610430 TGTTACTGGCAGCTTTGCTGCGATAT
1 TGTTACTGGCAGCTACGCTGCGATAT
112610456 TGGTGTACTGG
1 T-GT-TACTGG
112610467 TTGGGTGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 24 0.75
27 2 0.06
28 6 0.19
ACGTcount: A:0.14, C:0.19, G:0.30, T:0.37
Consensus pattern (26 bp):
TGTTACTGGCAGCTACGCTGCGATAT
Found at i:112614634 original size:18 final size:17
Alignment explanation
Indices: 112614576--112614634 Score: 52
Period size: 18 Copynumber: 3.5 Consensus size: 17
112614566 TCACTATTAG
112614576 ATTTATATTTAATAATAAT
1 ATTTATA-TTAAT-ATAAT
* *
112614595 A-TAATA-AAATATAA-
1 ATTTATATTAATATAAT
112614609 ATTTATATTAATATTAAT
1 ATTTATATTAATA-TAAT
112614627 ATTTATAT
1 ATTTATAT
112614635 ATATTAAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 9
0.71 0.09 0.20
Matches are distributed among these distances:
14 1 0.03
15 8 0.25
16 7 0.22
17 3 0.09
18 12 0.38
19 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTATATTAATATAAT
Found at i:112617526 original size:42 final size:44
Alignment explanation
Indices: 112617480--112617563 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 44
112617470 AGATAATAAA
* *
112617480 AACCAACACAATAAATT-AAGCTCTAGCAAAACCA-AAAACAAT
1 AACCAACACAATAAATTAAAGCTCAAGCAAAACAAGAAAACAAT
* *
112617522 AACCAACACGATAAATTAAAGTTCAAGCAAAACAAGAAAACA
1 AACCAACACAATAAATTAAAGCTCAAGCAAAACAAGAAAACA
112617564 TGAAAATCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 16 0.44
43 14 0.39
44 6 0.17
ACGTcount: A:0.58, C:0.21, G:0.07, T:0.13
Consensus pattern (44 bp):
AACCAACACAATAAATTAAAGCTCAAGCAAAACAAGAAAACAAT
Found at i:112628741 original size:16 final size:16
Alignment explanation
Indices: 112628686--112628741 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
112628676 AAAAGTCAAC
*
112628686 AACCCACACCCAAAAT
1 AACCCAAACCCAAAAT
** *
112628702 AACCTGAACCTGAAAA-
1 AACCCAAACC-CAAAAT
*
112628718 AACACAAACCCAAAAT
1 AACCCAAACCCAAAAT
112628734 AACCCAAA
1 AACCCAAA
112628742 GAGGTAATCC
Statistics
Matches: 29, Mismatches: 9, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
15 4 0.14
16 21 0.72
17 4 0.14
ACGTcount: A:0.55, C:0.34, G:0.04, T:0.07
Consensus pattern (16 bp):
AACCCAAACCCAAAAT
Found at i:112633185 original size:30 final size:29
Alignment explanation
Indices: 112633115--112633194 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 29
112633105 TTTAATAGTT
* * *
112633115 TATATTTTTATAATTGTTAAAGAATTAAA
1 TATAATTTTATTATTATTAAAGAATTAAA
*
112633144 TCA-AATGTTTATTATTTTTAAAGAATTAAA
1 T-ATAAT-TTTATTATTATTAAAGAATTAAA
112633174 GTATAATTTTATTATTATTAA
1 -TATAATTTTATTATTATTAA
112633195 TTTAAAATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
29 3 0.07
30 36 0.84
31 4 0.09
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.50
Consensus pattern (29 bp):
TATAATTTTATTATTATTAAAGAATTAAA
Found at i:112635747 original size:30 final size:29
Alignment explanation
Indices: 112635713--112635784 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 29
112635703 ATATATTACA
112635713 TAAAAATAAAAGATATAAGTATGTATATCG
1 TAAAAATAAAAGATATAAGTATGTATAT-G
* *
112635743 T-AAAATAAAACAATGTAAGTATGTATATG
1 TAAAAATAAAA-GATATAAGTATGTATATG
* *
112635772 TATATATAAAAGA
1 TAAAAATAAAAGA
112635785 AAATAGACGT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 12 0.34
30 23 0.66
ACGTcount: A:0.54, C:0.03, G:0.12, T:0.31
Consensus pattern (29 bp):
TAAAAATAAAAGATATAAGTATGTATATG
Found at i:112635912 original size:18 final size:18
Alignment explanation
Indices: 112635891--112635950 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
112635881 AAAATATGTT
*
112635891 TATAAAAAGATATATAGA
1 TATAAAAAGATATAAAGA
*
112635909 TATATAATAAGATATAAATA
1 TATA-AA-AAGATATAAAGA
*
112635929 TATAATAAGATATAAAGA
1 TATAAAAAGATATAAAGA
112635947 TATA
1 TATA
112635951 TATAAATAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 19 0.53
19 3 0.08
20 14 0.39
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (18 bp):
TATAAAAAGATATAAAGA
Found at i:112637667 original size:87 final size:87
Alignment explanation
Indices: 112637539--112638014 Score: 729
Period size: 87 Copynumber: 5.5 Consensus size: 87
112637529 CTTCCACCTA
* *
112637539 CTCCACTACAACCGATGAAGGCAAGGCCTT-GTTTTCGATCTGTTTCGCTGTTAACGCAGGAAGG
1 CTCCACTACAACCGATGGAGGCAAGG-CTTCGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGG
* *
112637603 CCAGATCTGCTATCTTTAACCAA
65 CAAGATCTGCTATCTTTAACCAG
* * * * ** *
112637626 CTCCGCTGCAACCGATTGAGGTAAGGCTTCGTTTTTTATCTGCTTCACTGTTAACGCAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGC
112637691 AAGATCTGCTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* * *
112637713 CTCCACTACAACCGATGGAGGCAAGGCTTCATTTTCGATCTGCTTCGCTATTAATGCAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGC
112637778 AAGATCTGCTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* * * *
112637800 CTCCGCTGCAACCGATGGAGGCAAGGCTTCGTTTCCGATCTGCTTCACTGTTAACGCAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGC
112637865 AAGATCTGCTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* *
112637887 CTCCACTACAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAAGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGC
* * *
112637952 AAAATTTACTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
112637974 CTCCACTACAACCGATGGAGGCAAGGCTTCGTTTTCGATCT
1 CTCCACTACAACCGATGGAGGCAAGGCTTCGTTTTCGATCT
112638015 TCACTGATCT
Statistics
Matches: 351, Mismatches: 37, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
86 3 0.01
87 348 0.99
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (87 bp):
CTCCACTACAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGC
AAGATCTGCTATCTTTAACCAG
Found at i:112639091 original size:21 final size:21
Alignment explanation
Indices: 112639065--112639111 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
112639055 GGTATAGCAG
112639065 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
** *
112639086 GATCACTTCATGCCCCATTCT
1 GATCACCACATGCCCCAATCT
112639107 GATCA
1 GATCA
112639112 ATATTTGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.38, G:0.11, T:0.26
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:112639343 original size:9 final size:8
Alignment explanation
Indices: 112639307--112639342 Score: 63
Period size: 8 Copynumber: 4.4 Consensus size: 8
112639297 CTATTTTGAC
112639307 TTTGATTTT
1 TTTGA-TTT
112639316 TTTGATTT
1 TTTGATTT
112639324 TTTGATTT
1 TTTGATTT
112639332 TTTGATTT
1 TTTGATTT
112639340 TTT
1 TTT
112639343 TTGAATTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 22 0.81
9 5 0.19
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.78
Consensus pattern (8 bp):
TTTGATTT
Found at i:112645690 original size:30 final size:29
Alignment explanation
Indices: 112645656--112645727 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 29
112645646 ATATATTACA
112645656 TAAAAATAAAAGATATAAGTATGTATATCG
1 TAAAAATAAAAGATATAAGTATGTATAT-G
* *
112645686 T-AAAATAAAACAATGTAAGTATGTATATG
1 TAAAAATAAAA-GATATAAGTATGTATATG
* *
112645715 TATATATAAAAGA
1 TAAAAATAAAAGA
112645728 AAATAGACGT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 12 0.34
30 23 0.66
ACGTcount: A:0.54, C:0.03, G:0.12, T:0.31
Consensus pattern (29 bp):
TAAAAATAAAAGATATAAGTATGTATATG
Found at i:112645855 original size:18 final size:18
Alignment explanation
Indices: 112645834--112645893 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
112645824 AAAATATGTT
*
112645834 TATAAAAAGATATATAGA
1 TATAAAAAGATATAAAGA
*
112645852 TATATAATAAGATATAAATA
1 TATA-AA-AAGATATAAAGA
*
112645872 TATAATAAGATATAAAGA
1 TATAAAAAGATATAAAGA
112645890 TATA
1 TATA
112645894 TATAAATAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 19 0.53
19 3 0.08
20 14 0.39
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (18 bp):
TATAAAAAGATATAAAGA
Found at i:112648174 original size:16 final size:17
Alignment explanation
Indices: 112648140--112648176 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
112648130 AACATGTGTC
112648140 TATTTTTTTAAAATATT
1 TATTTTTTTAAAATATT
*
112648157 TATTTTTTTAATAT-TT
1 TATTTTTTTAAAATATT
112648173 TATT
1 TATT
112648177 GTAATCATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TATTTTTTTAAAATATT
Found at i:112653740 original size:163 final size:164
Alignment explanation
Indices: 112653555--112653948 Score: 433
Period size: 168 Copynumber: 2.4 Consensus size: 164
112653545 AAAGGTTTTT
* * *
112653555 AAAGAAAAATAA-TTCTTTTGGTATTTTTCTTTAGAAAATCTTTAATTGATATTTATATATTTTT
1 AAAGCAAAATAATTTCTTTTGGTATTTTTCTTTAGAAAATCTTTGATTGATGTTTATATATTTTT
* * * *
112653619 TTTGGTGAAAATGTTTATACCTTTTTTTAGGAGAA-CTTATTTATATGATGAACATAAAATCAAA
66 TTTGGTGAAAAAGTTTATACCCTATTTTAGGAGAATCTT-TTGATATGATGAACATAAAATCAAA
* *
112653683 TTGTTCTGTAAAGTT-TGAAGTAAATGACAAAAAA-G
130 TT-TTCTATAAAATTAT-AAGTAAATGACAAAAAATG
* ** * * *
112653718 GAAGGGAAATAATTTC-TTTGGTATTTTTCTTCAGAAAAT-TCTTGATTGATGTTTATGTCTTCT
1 AAAGCAAAATAATTTCTTTTGGTATTTTTCTTTAGAAAATCT-TTGATTGATGTTTA--T-AT-A
** * *
112653781 TCTTTTTTTTTTGAAAAAGTTTATACCCTATTTTAGGTGAATCTTTTGATATGATGAATATAAAA
61 T-TTTTTTTGGTGAAAAAGTTTATACCCTATTTTAGGAGAATCTTTTGATATGATGAACATAAAA
* * **
112653846 TCAGATTTTTTATAAAATTATACTTAAATGACAAAAAATG
125 TCAAATTTTCTATAAAATTATAAGTAAATGACAAAAAATG
* *
112653886 AAAGCAAAATAATTTCTTTTGGTA-TTTTCTTTAGAAAATCCTTGATTGATGTTTATACATTTT
1 AAAGCAAAATAATTTCTTTTGGTATTTTTCTTTAGAAAATCTTTGATTGATGTTTATATATTTT
112653949 ATATTTGTTT
Statistics
Matches: 189, Mismatches: 30, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
162 1 0.01
163 46 0.24
164 4 0.02
165 1 0.01
166 2 0.01
167 25 0.13
168 100 0.53
169 10 0.05
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.45
Consensus pattern (164 bp):
AAAGCAAAATAATTTCTTTTGGTATTTTTCTTTAGAAAATCTTTGATTGATGTTTATATATTTTT
TTTGGTGAAAAAGTTTATACCCTATTTTAGGAGAATCTTTTGATATGATGAACATAAAATCAAAT
TTTCTATAAAATTATAAGTAAATGACAAAAAATG
Found at i:112655494 original size:138 final size:136
Alignment explanation
Indices: 112655309--112655727 Score: 463
Period size: 138 Copynumber: 3.0 Consensus size: 136
112655299 TTGTGTGAAA
* *
112655309 ATGTTTATA-CCCTTTTA-GTCGAATATTTTGATATGATG-AACTCAAAATTAGAC-AGTTGTGT
1 ATGTTTATACCCCTTTTAGGT-GAATTTTTTGATATGATGAAACT-AAAATTAAACTA-TT-TGT
* * *
112655370 AAAATTTAAAGTAAATGACAAAAAAGAAAAATAAAATAATTTCATTTGTTATTTTTGCTCGGAAA
62 AAAATTTAAAGTAAATGACAAAAAAGAAAAGTAAAATAATTTCTTTTGATATTTTT-CTCGGAAA
*
112655435 ATCCTTCATTG
126 ATCCTTAATTG
* * *
112655446 ATGTTTATACCCCTTTTAGGTGATTTTTTTGTTATGATGAAACTAAAATCAAACTATATTGTAAA
1 ATGTTTATACCCCTTTTAGGTGAATTTTTTGATATGATGAAACTAAAATTAAACTAT-TTGTAAA
* ** * * * *
112655511 ATTTTACTTAAATGACAAAAAAGGAAAGCAAAATAATTTCTTTTGGTATTTTTCTTCAGAAAATC
65 ATTTAAAGTAAATGACAAAAAAGAAAAGTAAAATAATTTCTTTTGATATTTTTC-TCGGAAAATC
* *
112655576 CTTGATTA
129 CTTAATTG
* * *
112655584 ATGTTTATTCCCCTTTTAGGTGAATTTTTAGATATGATGAATGC-AAAATTAAACTATTCTGTAA
1 ATGTTTATACCCCTTTTAGGTGAATTTTTTGATATGATGAA-ACTAAAATTAAACTATT-TGTAA
* * *
112655648 AATTTAAAGTAAAT-AGCAAAAAAAGGAAAAGTAGAATCATTTCTTTTGATATTTTTCTTGAGAA
64 AATTTAAAGTAAATGA-C-AAAAAA-GAAAAGTAAAATAATTTCTTTTGATATTTTTCTCG-GAA
112655712 AATCCTTAATTG
125 AATCCTTAATTG
112655724 ATGT
1 ATGT
112655728 ATACTTATCT
Statistics
Matches: 236, Mismatches: 34, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
137 12 0.05
138 164 0.69
139 16 0.07
140 44 0.19
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (136 bp):
ATGTTTATACCCCTTTTAGGTGAATTTTTTGATATGATGAAACTAAAATTAAACTATTTGTAAAA
TTTAAAGTAAATGACAAAAAAGAAAAGTAAAATAATTTCTTTTGATATTTTTCTCGGAAAATCCT
TAATTG
Found at i:112661400 original size:17 final size:18
Alignment explanation
Indices: 112661362--112661401 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
112661352 CTAGCATAGC
112661362 ATTTATTTTATTTTATCT
1 ATTTATTTTATTTTATCT
*
112661380 -TTTATTTTA-TTTATTT
1 ATTTATTTTATTTTATCT
112661396 ATTTAT
1 ATTTAT
112661402 CTATCATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (18 bp):
ATTTATTTTATTTTATCT
Found at i:112665282 original size:10 final size:11
Alignment explanation
Indices: 112665251--112665289 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
112665241 AAATCATTTT
112665251 GAAGAGAGAAA
1 GAAGAGAGAAA
112665262 GAA-A-A-AAA
1 GAAGAGAGAAA
112665270 GAAG-GAGAAA
1 GAAGAGAGAAA
112665280 GAAGAGAGAA
1 GAAGAGAGAA
112665290 TGGAGGGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
8 6 0.25
9 2 0.08
10 8 0.33
11 8 0.33
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:112665773 original size:29 final size:27
Alignment explanation
Indices: 112665741--112665794 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 27
112665731 TTTCTTGGTT
112665741 TTTTTTTTGGGGTTAGGTTTTTCTTTTTC
1 TTTTTTTT-GGGTTAGGTTTTT-TTTTTC
112665770 TTTTTTTTGGGTTAGGTTTTTTTTT
1 TTTTTTTTGGGTTAGGTTTTTTTTT
112665795 GGGGGGCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 4 0.16
28 13 0.52
29 8 0.32
ACGTcount: A:0.04, C:0.04, G:0.20, T:0.72
Consensus pattern (27 bp):
TTTTTTTTGGGTTAGGTTTTTTTTTTC
Found at i:112666654 original size:30 final size:30
Alignment explanation
Indices: 112666618--112666679 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
112666608 TTTTGAAAAA
112666618 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
112666648 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
112666678 CA
1 CA
112666680 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:112666835 original size:88 final size:86
Alignment explanation
Indices: 112666415--112666957 Score: 299
Period size: 88 Copynumber: 6.4 Consensus size: 86
112666405 AACTCATTTT
* * * * * *
112666415 TCGCAATATGAATTGACTCTCTAAAAACAGACATTAAAAACAGAAATTGAAAATAGCTCAGCACG
1 TCGCAATATGAGTTGACTTTTTGAAAACAGA-ATTAAAAACAGAAATTGAAAATACCTCAGCATG
**
112666480 TGAGCCAAGGCTCAACTCACCTC
65 TGA-CTGAGGCTCAACTCACCTC
* ** * ** *
112666503 TCGCAATATGAGTTGATTTTTTG-AAACTTAACTTGAAAAGCAGATTTTGAAAATACCTC-GATA
1 TCGCAATATGAGTTGACTTTTTGAAAACAGAA-TT-AAAAACAGAAATTGAAAATACCTCAG-CA
*
112666566 TGTGACTGAAGGTTCAACTCACCTC
63 TGTGACTG-AGGCTCAACTCACCTC
** * * * *
112666591 TCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAAGAC-TCAACT-CAACT-CTCGCAGA
1 TCGCAATATGAGTTGACTTTTTG-AAAACAG-AATTAAAA-ACAGAAATTGAAAATAC-CTCAG-
* ** *
112666652 AAT-T-A-AAAAGCTCAACTCACCTC
61 CATGTGACTGAGGCTCAACTCACCTC
* *** * *
112666675 TCGCAATATGAGTTGAATTTTT-TTGA-A-AA--AAAAACAGAAATTGAAAATAGCTCAGCACGT
1 TCGCAATATGAGTTGACTTTTTGAAAACAGAATTAAAAACAGAAATTGAAAATACCTCAGCATGT
** *
112666735 GAGCCAAGGCTCAACTCACTTC
66 GA-CTGAGGCTCAACTCACCTC
**
112666757 TCGCAATATGAGTTGA-TTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTC-GACA
1 TCGCAATATGAGTTGACTTTTTGAAAACAGAAT-T-AAAAACAGAAATTGAAAATACCTCAG-CA
* *
112666820 TGTGACCCGAGGCTCAACTCACATC
63 TGTGA-CTGAGGCTCAACTCACCTC
* * * ** **
112666845 TCGCAATGTGAGTTGATTTTTTTG--AA-A-AA-TATAAATTG-AA---AAAATACCTCAGTGTG
1 TCGCAATATGAGTTGA-CTTTTTGAAAACAGAATTAAAAACAGAAATTGAAAATACCTCAGCATG
*
112666901 TGATCTGAAGCTCAACTCACCTC
65 TGA-CTGAGGCTCAACTCACCTC
*
112666924 TCGCAATATGAGTTGATTTTTTTGAAAGACAGAA
1 TCGCAATATGAGTTGA-CTTTTTGAAA-ACAGAA
112666958 ATTGAAAATA
Statistics
Matches: 351, Mismatches: 70, Indels: 72
0.71 0.14 0.15
Matches are distributed among these distances:
77 2 0.01
78 8 0.02
79 62 0.18
80 4 0.01
81 6 0.02
82 34 0.10
83 8 0.02
84 35 0.10
85 5 0.01
86 5 0.01
87 23 0.07
88 144 0.41
89 7 0.02
90 8 0.02
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (86 bp):
TCGCAATATGAGTTGACTTTTTGAAAACAGAATTAAAAACAGAAATTGAAAATACCTCAGCATGT
GACTGAGGCTCAACTCACCTC
Found at i:112666919 original size:79 final size:76
Alignment explanation
Indices: 112666790--112667386 Score: 380
Period size: 77 Copynumber: 7.7 Consensus size: 76
112666780 AAACAGAATC
** * * * *
112666790 TGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAATGT
1 TGAAAAACAGAAATTGAAAATACCTCAG-CGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATAT
112666854 GAGTTGATTTTTT
64 GAGTTGATTTTTT
* * * * *
112666867 TGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATA
1 TGAAAAACAGAAATTG--AAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATA
112666932 TGAGTTGATTTTTT
63 TGAGTTGATTTTTT
* * * *
112666946 TGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGT-A-CCTGAGGCTCAACTCACCTCTCGCAATAT
112667010 GAGTTGATTTTTTTT
64 GAGTTGA--TTTTTT
** ** *** * * *
112667025 TGAAAGGCAGAAATTGAAAA-A-CGGAAATTGAAAATACCTCG-GTG-TGTAACCTGAGGCTCAA
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTG----TACCT-GAG-GCT-CAA-CTCA--C-C-T
* * * * * *
112667086 CTCGC-CTCTCACAATACGAGTTGATTT
54 CTCGCAATAT--GAGT-TGA-TT-TTTT
* * *
112667113 TTTTG-ACAATAGAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATA
1 T---GAAAAACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATA
112667176 TGAGTTGA-TTTTT
63 TGAGTTGATTTTTT
* * ** *
112667189 TGAAAAACAGAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCACAATATGA
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGA
112667253 GTTGATTTTTTTT
66 GTTGA--TTTTTT
* * * **
112667266 TGAAAAACAGAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGA
*
112667330 GTTGA--ATTT
66 GTTGATTTTTT
* *
112667339 TG-AAAACAGAAATTGAAATTACCTCAGCGTGT-CTTGAGGCTCAACTCA
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCA
112667387 TTTTGAACAG
Statistics
Matches: 414, Mismatches: 71, Indels: 75
0.74 0.13 0.13
Matches are distributed among these distances:
72 43 0.10
73 6 0.01
74 58 0.14
76 4 0.01
77 135 0.33
78 2 0.00
79 94 0.23
80 6 0.01
81 9 0.02
82 6 0.01
83 1 0.00
84 1 0.00
85 6 0.01
86 9 0.02
87 9 0.02
88 7 0.02
90 12 0.03
91 2 0.00
92 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (76 bp):
TGAAAAACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTT
Found at i:112666997 original size:77 final size:78
Alignment explanation
Indices: 112666829--112667044 Score: 283
Period size: 79 Copynumber: 2.7 Consensus size: 78
112666819 ATGTGACCCG
* * * * *
112666829 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG--AAAATACCT
* * * *
112666894 CAGTGTGTGATCTGA
64 CAGCGCGTGAGCTCA
*
112666909 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
112666973 GCGCGTGAGC-CA
66 GCGCGTGAGCTCA
*
112666985 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAGAAATTGAAAA
112667045 ACGGAAATTG
Statistics
Matches: 122, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
76 2 0.02
77 47 0.39
79 72 0.59
80 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
GCGCGTGAGCTCA
Found at i:112667109 original size:170 final size:167
Alignment explanation
Indices: 112666885--112667189 Score: 450
Period size: 170 Copynumber: 1.8 Consensus size: 167
112666875 ATAAATTGAA
* * * *
112666885 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGTGTGTAACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
*
112666950 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCGTG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
112667014 TGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
127 TGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* * * *
112667055 AAAATACCTCGGTGTGTAACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGTGTGTAACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
* * * *
112667120 AATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
112667185 TTTTT
131 TTTTT
112667190 GAAAAACAGA
Statistics
Matches: 121, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
166 2 0.02
167 43 0.36
169 18 0.15
170 58 0.48
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (167 bp):
AAAATACCTCAGTGTGTAACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
Found at i:112667109 original size:249 final size:245
Alignment explanation
Indices: 112666450--112667285 Score: 950
Period size: 254 Copynumber: 3.4 Consensus size: 245
112666440 AACAGACATT
112666450 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
** * *
112666515 TTGATTTTTTG-AAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGAAGG
66 TTGATTTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGATATGTGACCTG-AGG
* * * *
112666578 TTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATT-AAAAGACTCAACTC
130 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAA-AAT-ACCTC
* * * *
112666640 AACTCTCGCAGAAAT-TAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG
193 -AGTGT-G-TG--ATCT--GAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG
*
112666700 AAAAAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATA
1 ----AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
* *
112666765 TGAGTTGA-TTTTTGAAAACAG-AATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCC
62 TGAGTTGATTTTTTGAAAACAGAAAT-TGAAAAACAGATTTTGAAAATACCTCGATATGTGACCT
* * *
112666828 GAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACC
126 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAAAATACC
112666893 TCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
191 TCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* *
112666948 AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * ** * * *
112667013 TTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGTGTGTAACCTG
66 TTGA---TTTTTTGAAA-ACAGAAATTGAAAAACAGATTTTGAAAATACCTCGATATGTGACCTG
* * * * *
112667078 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-ACAATAGAAATTG--AAATTACCT
127 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAAAATACCT
* * *
112667140 CAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG
192 CAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * ** ** *
112667191 AAAAACAGAAATTGAAAATACCTCAGCA--TG-TCTTGAGGCTCAACTCATTTCTCACAATATGA
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
112667253 GTTGATTTTTTTTTGAAAAACAGAAATTGAAAA
65 GTTGA---TTTTTTG-AAAACAGAAATTGAAAA
112667286 TACCTCAGCA
Statistics
Matches: 516, Mismatches: 51, Indels: 43
0.85 0.08 0.07
Matches are distributed among these distances:
240 1 0.00
241 54 0.10
242 3 0.01
243 32 0.06
244 100 0.19
246 15 0.03
248 29 0.06
249 100 0.19
250 5 0.01
251 1 0.00
252 1 0.00
253 9 0.02
254 137 0.27
255 6 0.01
256 19 0.04
257 4 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (245 bp):
AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGATATGTGACCTGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAAAATACCTCAGT
GTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
Found at i:112667293 original size:77 final size:74
Alignment explanation
Indices: 112667038--112667389 Score: 440
Period size: 74 Copynumber: 4.7 Consensus size: 74
112667028 AAGGCAGAAA
* * * * *** *
112667038 TTGAAAAACGGAAATTGAAAATACCTCGGTGTGTAACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATAT
112667103 GAGTTGATTTTT
64 GAGTTGA-TTTT
* * * * ** *
112667115 TTG-ACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
112667179 GTTGATTTT
66 GTTGATTTT
*
112667188 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
112667253 GTTGATTTTTTT
66 GTTGA---TTTT
* * *
112667265 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
*
112667330 GTTGA-ATT
66 GTTGATTTT
*
112667338 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
112667390 TGAACAGAAA
Statistics
Matches: 248, Mismatches: 23, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
72 46 0.19
73 12 0.05
74 91 0.37
76 24 0.10
77 75 0.30
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
GTTGATTTT
Found at i:112667311 original size:151 final size:147
Alignment explanation
Indices: 112667038--112667389 Score: 472
Period size: 151 Copynumber: 2.4 Consensus size: 147
112667028 AAGGCAGAAA
* * * * ***
112667038 TTGAAAAACGGAAATTGAAAATACCTCGGTGTGTAACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATAC
* * * * *
112667103 GAGTTGATTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
64 GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTC
*
112667168 TCGCAATATGAGTTGATTTT
129 TCGCAATATGAGTTGA-ATT
* *
112667188 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
* **
112667253 GTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTT
66 GTTGA--TTTTTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCT
112667318 CTCGCAATATGAGTTGAATT
128 CTCGCAATATGAGTTGAATT
*
112667338 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
112667390 TGAACAGAAA
Statistics
Matches: 179, Mismatches: 20, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
148 31 0.17
149 47 0.26
150 43 0.24
151 58 0.32
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (147 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
GTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTCTC
GCAATATGAGTTGAATT
Found at i:112667409 original size:49 final size:49
Alignment explanation
Indices: 112667343--112667438 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
112667333 GAATTTTGAA
*
112667343 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
*
112667392 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
112667439 CTCGCAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:112667413 original size:121 final size:121
Alignment explanation
Indices: 112667271--112667510 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
112667261 TTTTTTGAAA
*
112667271 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
112667336 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* * * *
112667392 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
112667457 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
112667511 CTCGCAATAT
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:112667472 original size:72 final size:72
Alignment explanation
Indices: 112667392--112667616 Score: 283
Period size: 72 Copynumber: 3.0 Consensus size: 72
112667382 ACTCATTTTG
*
112667392 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
112667457 TTTTGAA
66 TTTTGAA
112667464 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
112667529 TTTTTTTTTGAA
66 -----TTTTGAA
* * * * ** *
112667541 AGACAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGC
1 A-ACAGAAATTGAAATTACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
112667605 TG-ATTTTGAA
62 TGAATTTTGAA
112667615 AA
1 AA
112667617 AGTAAAAATT
Statistics
Matches: 136, Mismatches: 8, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
72 64 0.47
73 1 0.01
74 8 0.06
77 8 0.06
78 20 0.15
79 1 0.01
80 33 0.24
81 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:112667679 original size:53 final size:54
Alignment explanation
Indices: 112667580--112667684 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 54
112667570 GAACCGAGGC
* *
112667580 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAAATT-AAAAGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAAAAATTGAAAAGT
* * *
112667633 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAAAAATTGAAAA
112667685 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
53 34 0.76
54 11 0.24
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAAAAATTGAAAAGT
Found at i:112667691 original size:13 final size:13
Alignment explanation
Indices: 112667664--112667697 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
112667654 GAGTTGATTC
*
112667664 TTGAACAACATAAA
1 TTGAA-AACAGAAA
112667678 TTGAAAACAGAAA
1 TTGAAAACAGAAA
112667691 TTGAAAA
1 TTGAAAA
112667698 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:112667819 original size:54 final size:54
Alignment explanation
Indices: 112667719--112667824 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
112667709 GACCTGAGGC
*
112667719 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGT-AAAATTGAAAAGGT
* *
112667773 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
112667825 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:112667828 original size:140 final size:140
Alignment explanation
Indices: 112667536--112668022 Score: 879
Period size: 140 Copynumber: 3.5 Consensus size: 140
112667526 GAATTTTTTT
112667536 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
112667600 TGAGCTGATTTTGAAAAAGTAAAAATTAAAA-GTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
112667664 TTGAACAACATAAA
127 TTGAACAACGTAAA
112667678 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
112667743 CTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
112667808 ACAACGTAAA
131 ACAACGTAAA
*
112667818 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAGCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
112667883 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCACAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
112667948 ACAACGTAAA
131 ACAACGTAAA
*
112667958 TTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
112668023 TTGAAATTAA
Statistics
Matches: 337, Mismatches: 6, Indels: 6
0.97 0.02 0.02
Matches are distributed among these distances:
138 3 0.01
139 59 0.18
140 246 0.73
141 23 0.07
142 6 0.02
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:112667959 original size:54 final size:54
Alignment explanation
Indices: 112667859--112667964 Score: 126
Period size: 54 Copynumber: 1.9 Consensus size: 54
112667849 GACCTGAGGC
* * *
112667859 TCAACTCAGCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCACAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
112667913 TCAACCCACCTCTCACAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCACAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
112667965 TAGAAATTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
54 31 0.70
55 9 0.20
56 4 0.09
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:112667973 original size:13 final size:13
Alignment explanation
Indices: 112667955--112667979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
112667945 TGAACAACGT
112667955 AAATTGAAAATAG
1 AAATTGAAAATAG
112667968 AAATTGAAAATA
1 AAATTGAAAATA
112667980 CCTCAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:112668211 original size:120 final size:124
Alignment explanation
Indices: 112667995--112668239 Score: 390
Period size: 120 Copynumber: 2.0 Consensus size: 124
112667985 GCGTGACCTG
* *
112667995 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
*
112668060 TGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTGAAAA-AAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
* * * *
112668118 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
*
112668180 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
112668239 A
1 A
112668240 ATACCTCAAC
Statistics
Matches: 113, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
120 67 0.59
121 18 0.16
122 1 0.01
123 27 0.24
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:112668261 original size:71 final size:70
Alignment explanation
Indices: 112668118--112668292 Score: 228
Period size: 71 Copynumber: 2.5 Consensus size: 70
112668108 AAAAATTAAA
* * * * * *
112668118 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
112668182 CCCCG
66 CCCCG
*
112668187 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
112668252 GTCTTG
65 GCCCCG
112668258 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
112668293 CCCTTGAAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.06
71 61 0.66
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:112669743 original size:14 final size:13
Alignment explanation
Indices: 112669698--112669754 Score: 60
Period size: 14 Copynumber: 4.1 Consensus size: 13
112669688 TGATGTGAAT
*
112669698 AATAAAATATATAA
1 AATAAAA-ATATTA
112669712 AATATAAAATATTA
1 AATA-AAAATATTA
112669726 AATAAAAATATTA
1 AATAAAAATATTA
*
112669739 GAATAATAATAATTA
1 -AATAAAAAT-ATTA
112669754 A
1 A
112669755 TATTGACAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
13 9 0.24
14 22 0.58
15 7 0.18
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (13 bp):
AATAAAAATATTA
Found at i:112669953 original size:22 final size:24
Alignment explanation
Indices: 112669890--112669954 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
112669880 CGTGATAATA
*
112669890 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
112669915 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
112669938 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
112669955 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:112670006 original size:22 final size:23
Alignment explanation
Indices: 112669964--112670033 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 23
112669954 AGATAACATG
* * *
112669964 TAAA-AAAATATATATATATATA
1 TAAATAAAATAGATAAAGATATA
*
112669986 TAAATAATATA-ATAAAGATATA
1 TAAATAAAATAGATAAAGATATA
* *
112670008 TACATAAAATAGTATAAATATATA
1 TAAATAAAATAG-ATAAAGATATA
112670032 TA
1 TA
112670034 TACGTAATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
22 22 0.56
23 5 0.13
24 12 0.31
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (23 bp):
TAAATAAAATAGATAAAGATATA
Found at i:112670018 original size:24 final size:26
Alignment explanation
Indices: 112669977--112670033 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 26
112669967 AAAAATATAT
*
112669977 ATATATATATAAATAATA-TAATAAAG
1 ATATATACATAAATAATAGT-ATAAAG
*
112670003 ATATATACAT-AA-AATAGTATAAAT
1 ATATATACATAAATAATAGTATAAAG
112670027 ATATATA
1 ATATATA
112670034 TACGTAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 16 0.57
25 3 0.11
26 9 0.32
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (26 bp):
ATATATACATAAATAATAGTATAAAG
Found at i:112670036 original size:26 final size:26
Alignment explanation
Indices: 112669969--112670045 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
112669959 ACATGTAAAA
* *
112669969 AAATATATATATATATATAAATAATAT
1 AAATATATATATACATA-AAATAGTAT
* *
112669996 AATAAAGATATATACATAAAATAGTAT
1 AA-ATATATATATACATAAAATAGTAT
* *
112670023 AAATATATATATACGTAATATAG
1 AAATATATATATACATAAAATAG
112670046 AATTTAAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
26 17 0.41
27 12 0.29
28 12 0.29
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (26 bp):
AAATATATATATACATAAAATAGTAT
Found at i:112670108 original size:23 final size:25
Alignment explanation
Indices: 112670065--112670110 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
112670055 TATACCTAAT
112670065 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
112670090 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
112670111 ACAAAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:112670645 original size:30 final size:30
Alignment explanation
Indices: 112670590--112670733 Score: 220
Period size: 30 Copynumber: 4.8 Consensus size: 30
112670580 GTAGTACAAG
* *
112670590 TGGTGGTGGAGAAGGTGT-G-TAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
112670618 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGTT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAG-T
*
112670649 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
112670679 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
112670709 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
112670734 TGAGAAAAGT
Statistics
Matches: 107, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
28 15 0.14
29 1 0.01
30 63 0.59
31 28 0.26
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:112670687 original size:61 final size:60
Alignment explanation
Indices: 112670590--112670733 Score: 229
Period size: 61 Copynumber: 2.4 Consensus size: 60
112670580 GTAGTACAAG
*
112670590 TGGTGGTGGAGAAGGTGT-G-TAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAG-T
* *
112670649 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
112670709 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
112670734 TGAGAAAAGT
Statistics
Matches: 79, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
59 17 0.22
60 26 0.33
61 36 0.46
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.26
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:112671707 original size:76 final size:71
Alignment explanation
Indices: 112671531--112671718 Score: 211
Period size: 72 Copynumber: 2.6 Consensus size: 71
112671521 AGCATGTGAG
* * * **
112671531 CCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTTGACAAACAGAAATTGAAATTACCA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTCAAA-TAAAA
112671596 ATACTGC
65 ATACTGC
* *
112671603 CCGAGGCTCAACTCACCTTTCGAAATATGAGTTGATTTTTTGA-AAACAGAAATTCAAA-AAAAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTCAAATAAAAA
112671666 TACCTCAGC
66 TA-CT--GC
*
112671675 GGTCCTGAGGCTCAACTCAACTCTCGCAATATGA-TTGATTTTTT
1 ---CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
112671719 ACGACAGAAT
Statistics
Matches: 99, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
69 5 0.05
70 2 0.02
71 14 0.14
72 41 0.41
75 12 0.12
76 25 0.25
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.29
Consensus pattern (71 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTCAAATAAAAA
TACTGC
Found at i:112672048 original size:14 final size:14
Alignment explanation
Indices: 112672029--112672064 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
112672019 TGAGTGATTT
* *
112672029 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
112672043 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
112672057 TTGAAAAA
1 TTGAAAAA
112672065 AAGTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.64, C:0.03, G:0.11, T:0.22
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:112672224 original size:76 final size:75
Alignment explanation
Indices: 112672069--112672442 Score: 276
Period size: 76 Copynumber: 5.1 Consensus size: 75
112672059 GAAAAAAAGT
*
112672069 AAAAAACCTCAGCGTGTGAGCCGAGACTCAACT-ACCT-TCGCAA-ATGAGTTGATTTTTTGACA
1 AAAAAACCTCAGCGTGT-AGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACA
*
112672131 GAAAGCAAAATT-
65 AAAAG--AAATTG
*
112672143 -AAAAACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-A
1 AAAAAACCTCAGCGTGT-AGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACA
112672206 AAATAGAAATTG
65 AAA-AGAAATTG
112672218 AAAAAACCTCAGCAGT-T----GAGGCTCAACTCACCTCTCGCATATATGAG-T--TTTTTTGAA
1 AAAAAACCTCAGC-GTGTAGCCGAGGCTCAACTCACCTCTCGCA-ATATGAGTTGATTTTTTG--
112672275 AACAAAATTGACAGAAATTG
62 -AC-AAA---A-AGAAATTG
* * * *
112672295 AAAATACCTCA-CGGGT--CTTGA--TTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG--A
1 AAAAAACCTCAGCGTGTAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACA
112672352 AAAAGAAATTG
65 AAAAGAAATTG
* * * * *
112672363 AAAATACCTCA-TGTG-A-CTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAA
1 AAAAAACCTCAGCGTGTAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-A
*
112672425 TAAAACAGAAATTG
63 CAAAA-AGAAATTG
112672439 AAAA
1 AAAA
112672443 TAGAAATGGA
Statistics
Matches: 256, Mismatches: 12, Indels: 62
0.78 0.04 0.19
Matches are distributed among these distances:
68 26 0.10
69 8 0.03
70 28 0.11
71 22 0.09
72 17 0.07
73 29 0.11
74 12 0.05
75 14 0.05
76 53 0.21
77 39 0.15
78 6 0.02
79 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (75 bp):
AAAAAACCTCAGCGTGTAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAA
AAAGAAATTG
Found at i:112672410 original size:70 final size:68
Alignment explanation
Indices: 112672287--112672419 Score: 212
Period size: 70 Copynumber: 1.9 Consensus size: 68
112672277 CAAAATTGAC
* *
112672287 AGAAATTGAAAATACCTCACGGGTCTTGATTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
1 AGAAATTGAAAATACCTCACGGGACTTGATTCAACTCACCTCTCACAATATGAGTTGATTTTTGA
112672352 AAA
66 AAA
* *
112672355 AGAAATTGAAAATACCTCATGTGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 AGAAATTGAAAATACCTCACGGGACTTGA--TTCAACTCACCTCTCACAATATGAGTTGATTTTT
112672420 TTGAATAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
68 26 0.44
70 33 0.56
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (68 bp):
AGAAATTGAAAATACCTCACGGGACTTGATTCAACTCACCTCTCACAATATGAGTTGATTTTTGA
AAA
Found at i:112672500 original size:154 final size:144
Alignment explanation
Indices: 112672170--112672523 Score: 374
Period size: 154 Copynumber: 2.4 Consensus size: 144
112672160 AGCCAAGGCT
*
112672170 CAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAAAACCTCAGCAGTT
1 CAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AAAA-AGAAATTGAAAAAACCTCAGCACTT
* * *
112672235 GAGGCTCAACTCACCTCTCGCATATATGAGTTTTTTTGAAAACAAAATTGACAGAAATTGAAAAT
63 GAGGCTCAACTCACCTCTCACATATATGAGTTTTTTTGAAAACAAAATTGACAGAAATGGAAAAC
* *
112672300 ACCTCACGGGTCTTGATT
128 ACCTCACGCG-CTTGATG
* *
112672318 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGAAATTGAAAATACCTCATGTGACTTG
1 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGAAATTGAAAAAACCTCA-G-CACTTG
* *
112672383 AGGTTCAACTCACCTCTCACA-ATATGAGTTGATTTTTTTGAATAAAACAGAAATTGAAAATAGA
64 AGGCTCAACTCACCTCTCACATATATGA---G-TTTTTTTG---AAAACA-AAATTG---ACAGA
112672447 AATGGAAAAACACCTCA-GCG-TTGA-G
118 AATGG-AAAACACCTCACGCGCTTGATG
* * * * *
112672472 GAGCTCACCTCTCGCAATATGAGCTGATTTTTGAAACAATAAATTAAAAAAA
1 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-AAGAAATTGAAAAAA
112672524 AAAGAAATTA
Statistics
Matches: 175, Mismatches: 16, Indels: 23
0.82 0.07 0.11
Matches are distributed among these distances:
145 18 0.10
146 11 0.06
147 29 0.17
148 27 0.15
149 1 0.01
150 8 0.05
153 6 0.03
154 39 0.22
155 16 0.09
157 10 0.06
158 10 0.06
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (144 bp):
CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGAAATTGAAAAAACCTCAGCACTTGAG
GCTCAACTCACCTCTCACATATATGAGTTTTTTTGAAAACAAAATTGACAGAAATGGAAAACACC
TCACGCGCTTGATG
Found at i:112672648 original size:71 final size:72
Alignment explanation
Indices: 112672533--112672809 Score: 297
Period size: 75 Copynumber: 3.9 Consensus size: 72
112672523 AAAAGAAATT
* * *
112672533 AAAAATTG-AATTACCTCA-CGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG-TGA-TTT
1 AAAAATTGAAAATACCTCAGCGTGG-CCTAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
112672594 T-AAAAAGC
65 TGAAAAA-C
*
112672602 AAAAATTGAAAATACCTCAGCGTTGGCCTAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
1 AAAAATTGAAAATACCTCAGCG-TGGCCTAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
*
112672667 TTGATAAAAT
64 TTGA-AAAAC
* * *
112672677 AGAATTTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAAAATTGAAAATACCTCAGCGTGGCCT-AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
112672742 TGACAAAC
65 TGAAAAAC
* * * *
112672750 -AAAATTGAAATTACCTCAG-AT--CTTGAGG--CAACTCACTTCTCGCAATATGAGTTGATTTT
1 AAAAATTGAAAATACCTCAGCGTGGCCT-AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
112672809 T
65 T
112672810 TTTTGAAACA
Statistics
Matches: 182, Mismatches: 17, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
67 31 0.17
69 14 0.08
70 9 0.05
71 31 0.17
72 22 0.12
73 3 0.02
74 16 0.09
75 52 0.29
76 4 0.02
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (72 bp):
AAAAATTGAAAATACCTCAGCGTGGCCTAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GAAAAAC
Found at i:112673257 original size:132 final size:125
Alignment explanation
Indices: 112672867--112673258 Score: 334
Period size: 132 Copynumber: 3.1 Consensus size: 125
112672857 GTGTCCTGAG
* * * * *
112672867 GCTCAACTCACCTCTCGCAATATGAGTTGA-AATTAAAACACAAAAATTGAAAATACCTCAGCGT
1 GCTCAATTCACCTCTCGCAATATGAGTTGATTATTAAAAAACAGAAATTGAAAATACCTCAACGT
* * * *
112672931 GCCCCGAGGCTCAACTCACCTCT-GCAATATGAGCTGATTTTAAAAAGTAGAAATT-AAA-A
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAACAA--AGAAATTGAAATA
* * * * * * * *
112672990 GGTTCAA-CCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCA
1 -GCTCAATTCACCTCTCGCAATATGAGTTGATTATTAAAAAACAGAAATTGAAAATACCTCAACG
* * *
112673054 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGA----AAAAAATACCACAGTGTGTAAT
65 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAACAAAGA--A-A-T-TG-AA-
*
112673115 CTGAA
123 AT--A
*
112673120 GCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGAAATTGAAAATACCTCAAC
1 GCTCAATTCACCTCTCGCAATATGAGTTGA--TTATTAAAAAACAGAAATTGAAAATACCTCAAC
*
112673185 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAACAAAGAAATTGGAAA
64 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-TT-AACAAAGAAATT-GAAA
112673250 TA
124 TA
*
112673252 CCTCAAT
1 GCTCAAT
112673259 GTGTCTTGAG
Statistics
Matches: 212, Mismatches: 31, Indels: 42
0.74 0.11 0.15
Matches are distributed among these distances:
119 2 0.01
121 6 0.03
122 1 0.00
123 23 0.11
124 52 0.25
125 12 0.06
126 2 0.01
129 5 0.02
130 23 0.11
132 72 0.34
134 1 0.00
135 3 0.01
136 2 0.01
137 1 0.00
138 1 0.00
140 6 0.03
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (125 bp):
GCTCAATTCACCTCTCGCAATATGAGTTGATTATTAAAAAACAGAAATTGAAAATACCTCAACGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAACAAAGAAATTGAAATA
Found at i:112673272 original size:74 final size:75
Alignment explanation
Indices: 112673115--112673663 Score: 672
Period size: 74 Copynumber: 7.5 Consensus size: 75
112673105 AGTGTGTAAT
* * * * *
112673115 CTGAAGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACAACAGAAATTGAAATTACC
*
112673180 TCAACGTGTC
66 TCAGCGTGTC
* *
112673190 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAACAA-AGAAATTGGAAA-TAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACAACAGAAATT-GAAATTAC
**
112673253 CTCAATGTGTC
65 CTCAGCGTGTC
* *
112673264 TTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTG-ACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACAACAGAAATTGAAATTACC
112673328 TCAGCGTGTC
66 TCAGCGTGTC
* * *
112673338 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA---TTTTGAAAAACAAAAATTGAAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACAACAGAAATTG-AAATTAC
112673400 CTCAGCG-GTC
65 CTCAGCGTGTC
** * *
112673410 CTGAGGCTCAACTCATTTCCTTGCAATATGAGTTAATTTTTTTTG-ACAA-AGAAA-TGAAATTA
1 CTGAGGCTCAACTCACCT-CTCGCAATATGAGTTGA-TTTTTTTGAACAACAGAAATTGAAATTA
112673472 CCTCAGCGTGTC
64 CCTCAGCGTGTC
* * * *
112673484 CAGAGGC-CAACTCACCTCTAGCAATATGAGTTGA---TTTTGAAAAACAAAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACAACAGAAATTGAAATTACC
112673545 TCAGCGTGTC
66 TCAGCGTGTC
*
112673555 CTGAGGCTCAACTCA-TTCTCGCAATATGAGTT-ATTTTTTTGACACAA-AGAAA-T-ATAA-TA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-ACAACAGAAATTGA-AATTA
112673614 -CTCAGCGTGTC
64 CCTCAGCGTGTC
*
112673625 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
112673664 GAAAAACAAA
Statistics
Matches: 416, Mismatches: 36, Indels: 47
0.83 0.07 0.09
Matches are distributed among these distances:
68 5 0.01
69 3 0.01
70 31 0.07
71 64 0.15
72 60 0.14
73 69 0.17
74 126 0.30
75 50 0.12
76 3 0.01
77 5 0.01
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (75 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACAACAGAAATTGAAATTACC
TCAGCGTGTC
Found at i:112673537 original size:145 final size:146
Alignment explanation
Indices: 112673136--112673677 Score: 743
Period size: 148 Copynumber: 3.7 Consensus size: 146
112673126 TTCACCTCTC
* * * * *
112673136 GCAATATGAGTTGATTTTTTTAAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
1 GCAATATGAGTTGATTTTTTT-GACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
* * * **
112673201 CTCACCTCTCGCAATATGAGTTGATTTTCTTGAACAA-AGAAATTGGAAA-TACCTCAATGTGTC
65 CTCACCTCTAGCAATATGAGTTGA--TT-TTGAAAAACAAAAATT-GAAATTACCTCAGCGTGTC
*
112673264 TTGAGGCTCAACTCA--CCTTT
126 CTGAGGCTCAACTCATTCC-TT
112673284 CGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
1 -GCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
112673349 CTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAAATTACCTCAGCG-GTCCTG
65 CTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTG-AAATTACCTCAGCGTGTCCTG
112673413 AGGCTCAACTCATTTCCTT
129 AGGCTCAACTCA-TTCCTT
* *
112673432 GCAATATGAGTTAATTTTTTTTGACAA-AGAAA-TGAAATTACCTCAGCGTGTCCAGAGGC-CAA
1 GCAATATGAGTTGA-TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
112673494 CTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGA
65 CTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGA
*
112673559 GGCTCAACTCATT-CTC
130 GGCTCAACTCATTCCTT
*
112673575 GCAATATGAGTT-ATTTTTTTGACACAAAGAAA-T-ATAA-TA-CTCAGCGTGTCCTGAGGCTCA
1 GCAATATGAGTTGATTTTTTTGACA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCA
112673635 ACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT
64 ACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT
112673678 AAGGCAACTC
Statistics
Matches: 366, Mismatches: 15, Indels: 31
0.89 0.04 0.08
Matches are distributed among these distances:
141 28 0.08
142 50 0.14
143 22 0.06
144 16 0.04
145 72 0.20
146 54 0.15
147 26 0.07
148 75 0.20
149 23 0.06
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (146 bp):
GCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
TCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAG
GCTCAACTCATTCCTT
Found at i:112674373 original size:14 final size:14
Alignment explanation
Indices: 112674354--112674381 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
112674344 ATTTTTTTAC
112674354 GAACAGAAATTGAA
1 GAACAGAAATTGAA
112674368 GAACAGAAATTGAA
1 GAACAGAAATTGAA
112674382 AAGACTCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:112675030 original size:25 final size:26
Alignment explanation
Indices: 112674988--112675043 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
112674978 ATGATGTGAA
112674988 TAATAAAATATATAAAT-ATAA-ATAT
1 TAATAAAATATATAAATAATAATA-AT
112675013 TAATAAAATAT-TAGAATAATAATAAT
1 TAATAAAATATATA-AATAATAATAAT
112675039 TAATA
1 TAATA
112675044 TTGACAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
24 2 0.07
25 14 0.50
26 11 0.39
27 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
TAATAAAATATATAAATAATAATAAT
Found at i:112675303 original size:23 final size:23
Alignment explanation
Indices: 112675269--112675355 Score: 72
Period size: 23 Copynumber: 3.7 Consensus size: 23
112675259 ATATATATAT
*
112675269 ATATATAAATAATATAATATTAA
1 ATATATACATAATATAATATTAA
* *
112675292 ATATATACATAAAATAGTA-TAA
1 ATATATACATAATATAATATTAA
*
112675314 TATATATTACGTAATATAGA-ATTTAA
1 -ATATA-TACATAATATA-ATA-TTAA
*
112675340 A-ATATACCTAATATAA
1 ATATATACATAATATAA
112675356 AAAAGAATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
22 4 0.08
23 31 0.60
24 13 0.25
25 1 0.02
26 3 0.06
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (23 bp):
ATATATACATAATATAATATTAA
Found at i:112675905 original size:30 final size:28
Alignment explanation
Indices: 112675871--112676006 Score: 149
Period size: 29 Copynumber: 4.9 Consensus size: 28
112675861 GTAGTACAAG
* *
112675871 TGGTGGTGGAGAAGTGTGGCTAGTGGAGTT
1 TGGTGGTGGAAAAGAGTGGCTAGT-GAG-T
112675901 TGGT-GTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGG-AAAAGAGTGGCTAGT-GAGT
112675930 TGGT-GTGG-AAAG-GTTGGCT-GTGAGT
1 TGGTGGTGGAAAAGAG-TGGCTAGTGAGT
*
112675955 T-GTGGTGGAAAAGGTGTGGCTAGTGAGT
1 TGGTGGTGGAAAA-GAGTGGCTAGTGAGT
112675983 TGGTGGTGGAAAAGAGTGGCTAGT
1 TGGTGGTGGAAAAGAGTGGCTAGT
112676007 TGAGAAAAGT
Statistics
Matches: 95, Mismatches: 3, Indels: 18
0.82 0.03 0.16
Matches are distributed among these distances:
24 2 0.02
25 9 0.09
26 6 0.06
27 15 0.16
28 18 0.19
29 24 0.25
30 21 0.22
ACGTcount: A:0.21, C:0.04, G:0.47, T:0.28
Consensus pattern (28 bp):
TGGTGGTGGAAAAGAGTGGCTAGTGAGT
Found at i:112676756 original size:15 final size:15
Alignment explanation
Indices: 112676736--112676785 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
112676726 TGAGTGATTT
* *
112676736 TTGAAAAAATATAAA
1 TTGAAAAAACAGAAA
112676751 TTGAAAAAACAGAAA
1 TTGAAAAAACAGAAA
*
112676766 TTG-AAAAGCAGAAA
1 TTGAAAAAACAGAAA
112676780 TT-AAAA
1 TTGAAAA
112676786 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 15 0.48
15 16 0.52
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (15 bp):
TTGAAAAAACAGAAA
Found at i:112676772 original size:14 final size:14
Alignment explanation
Indices: 112676748--112676785 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
112676738 GAAAAAATAT
112676748 AAATTGAAAAAACAG
1 AAATTG-AAAAACAG
*
112676763 AAATTGAAAAGCAG
1 AAATTGAAAAACAG
112676777 AAATT-AAAA
1 AAATTGAAAA
112676786 GACCTCAGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 4 0.18
14 12 0.55
15 6 0.27
ACGTcount: A:0.66, C:0.05, G:0.13, T:0.16
Consensus pattern (14 bp):
AAATTGAAAAACAG
Found at i:112676978 original size:78 final size:73
Alignment explanation
Indices: 112676766--112676992 Score: 244
Period size: 78 Copynumber: 3.0 Consensus size: 73
112676756 AAAACAGAAA
* * * *
112676766 TTGAAAAGCAGAAATT-AAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTAAAAATACCTCAGC--GT--CCCGAGGCTCAACTCACCTCTCGCAATAT
*
112676830 GAGTT-A-ATTT
62 GAGTTGATTTTT
* * * * *
112676840 TTGACAAACAGAAATTGAAATTACCTCAGCGTCCCGAGGCTCAACTCACCTTTCGAAATATGAGT
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
112676905 TGATTTTT
66 TGATTTTT
* *
112676913 TTGAAAAACAGAAATTTAAAAAATACCTCAGCCGTGTCCTGAGGCTCAACTCATCTCTCGCAATA
1 TTGAAAAACAGAAA-TT-AAAAATACCTCAG-C--GTCCCGAGGCTCAACTCACCTCTCGCAATA
112676978 TGAGTTGATTTTT
61 TGAGTTGATTTTT
112676991 TT
1 TT
112676993 TACGAACAGA
Statistics
Matches: 129, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
71 30 0.23
72 1 0.01
73 18 0.14
74 16 0.12
75 22 0.17
76 1 0.01
78 41 0.32
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.29
Consensus pattern (73 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTT
Found at i:112677001 original size:78 final size:74
Alignment explanation
Indices: 112676802--112677005 Score: 252
Period size: 78 Copynumber: 2.7 Consensus size: 74
112676792 AGCATGTGAG
* * * *
112676802 CCGAGACTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAA-TTGAAATTAC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTTAAAAATAC
112676864 CTCAGCGTC
66 CTCAGCGTC
* * *
112676873 CCGAGGCTCAACTCACCTTTCGAAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAAATA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTT-AAAAATA
112676938 CCTCAGCCGTGTC
65 CCTCAG-C--GTC
* * * *
112676951 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAAT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAAT
112677006 GAAGAACAGA
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
71 30 0.27
72 1 0.01
73 16 0.14
74 2 0.02
75 11 0.10
76 1 0.01
78 51 0.46
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (74 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTTAAAAATAC
CTCAGCGTC
Found at i:112677475 original size:77 final size:73
Alignment explanation
Indices: 112677333--112677572 Score: 258
Period size: 77 Copynumber: 3.2 Consensus size: 73
112677323 AAAACAGAAA
* * * * *
112677333 TTGAAAGCAGAAAGT-AAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATAT
1 TTGAAAACAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATAT
112677397 GAGTTGAGTTT
64 GAGTTGA-TTT
* *
112677408 TTGACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGA-AAACAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATA
112677473 TGAGTTGATTTT
63 TGAGTTGA-TTT
* *
112677485 TTGAAAAACAGAAATTG-AAAGCACCT-AGCATGTTG--A-GCTCAACTCAACCCTCTCGCAATA
1 TTG-AAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTC-A-CCTCTCGCAATA
112677545 TGAGTTGATTT
63 TGAGTTGATTT
*
112677556 TTGAAAACATAAATTGA
1 TTGAAAACAGAAATTGA
112677573 GCAGAATTGA
Statistics
Matches: 145, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.14
71 8 0.06
72 20 0.14
74 1 0.01
75 10 0.07
76 16 0.11
77 68 0.47
78 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:112677557 original size:72 final size:71
Alignment explanation
Indices: 112677375--112677727 Score: 282
Period size: 77 Copynumber: 4.8 Consensus size: 71
112677365 TGAGCCGAGA
* *
112677375 CTCAACTCA-CCTCTCACAATATGAGTTGAGTTTTTGACAAACAGAAATTGAAAAATACCTCAGC
1 CTCAACTCACCCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTG-AAAATACCTCAGC
* *
112677439 GTGTAAGCCAAGG
64 ATGT-TG---A-G
**
112677452 CTCAACTCA-CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAGCACCT-AGCA
1 CTCAACTCACCCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCAGCA
112677515 TGTTGAG
65 TGTTGAG
*
112677522 CTCAACTCAACCCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAGCAGAATTGAAAAT
1 CTCAACTC-ACCCTCTCGCAATATGAGTTGATTTTTG---A-A-AAA--CAG-A-AATTGAAAAT
* *
112677587 ACCTCAAGCGTCTTGAGG
56 ACCTC-AGCATGTTGA-G
*
112677605 CTCAACTCA-CCTCTCGCAATATGAGTTGATTTTTG----A-TGAAATTGAAAATACCT---CAT
1 CTCAACTCACCCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCAT
112677661 GCTTGAG
66 G-TTGAG
*
112677668 -TCAACTCACCTCTCACGCAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAATA
1 CTCAACTCACC-CTCTCGCAATATGAGTTGA-TTTTTG-A--AAAACAGAAATTGAAAATA
112677728 GAAATGAAAC
Statistics
Matches: 233, Mismatches: 17, Indels: 56
0.76 0.06 0.18
Matches are distributed among these distances:
62 8 0.03
63 4 0.02
64 22 0.09
65 6 0.03
67 14 0.06
68 1 0.00
69 1 0.00
70 9 0.04
71 8 0.03
72 22 0.09
73 13 0.06
74 2 0.01
75 7 0.03
76 10 0.04
77 47 0.20
78 2 0.01
79 1 0.00
80 12 0.05
81 26 0.11
82 9 0.04
83 9 0.04
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (71 bp):
CTCAACTCACCCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCAT
GTTGAG
Found at i:112677611 original size:153 final size:146
Alignment explanation
Indices: 112677449--112677788 Score: 388
Period size: 153 Copynumber: 2.3 Consensus size: 146
112677439 GTGTAAGCCA
*
112677449 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAGCACCTAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG----A-AGAAATTGAAAACACCT--C
* * *
112677514 ATG-TTGAGCTCAACTCAACC-CTCTCGCAATATGAGTTGA-TTTTTG-AAAACATAAATTG-AG
59 ATGCTTGAG-TCAACTC-ACCTCTCACGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA
* *
112677574 CAGAATTGAAAATACCTCAAGCGTCTTG
122 CAGAAATG-AAACACCTC-AGCGTC-TG
* *
112677602 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGATGAAATTGAAAATACCTCATGCTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAGAAATTGAAAACACCTCATGCTTG
*
112677666 AGTCAACTCACCTCTCACGCAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAATAGAA
66 AGTCAACTCACCTCTCACGCAATATGAGTTGATTTTTTG-A--AAAACAGAAATTG-AAACAGAA
112677731 ATGAAACACCTCAGCGTCTG
127 ATGAAACACCTCAGCGTCTG
*
112677751 A-GCTCAACTCACCTCTCGCAATATGAGCTGATTATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTT
112677789 TTGAAACACA
Statistics
Matches: 166, Mismatches: 10, Indels: 25
0.83 0.05 0.12
Matches are distributed among these distances:
144 3 0.02
145 29 0.17
146 11 0.07
147 14 0.08
148 30 0.18
149 4 0.02
150 22 0.13
151 8 0.05
152 13 0.08
153 32 0.19
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (146 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAGAAATTGAAAACACCTCATGCTTG
AGTCAACTCACCTCTCACGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAACAGAAATGA
AACACCTCAGCGTCTG
Found at i:112677692 original size:64 final size:67
Alignment explanation
Indices: 112677577--112677702 Score: 190
Period size: 64 Copynumber: 1.9 Consensus size: 67
112677567 AATTGAGCAG
112677577 AATTGAAAATACCTCAAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAT
1 AATTGAAAATACCTCAAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAT
112677642 GA
66 GA
*
112677644 AATTGAAAATACCTC-A-TG-CTTGA-G-TCAACTCACCTCTCACGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAAGCGTCTTGAGGCTCAACTCACCTCT--CGCAATATGAGTTGATTTTT
112677703 TGAATTAAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 7
0.88 0.02 0.11
Matches are distributed among these distances:
62 13 0.23
63 1 0.02
64 25 0.45
65 1 0.02
66 1 0.02
67 15 0.27
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (67 bp):
AATTGAAAATACCTCAAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAT
GA
Found at i:112677933 original size:73 final size:73
Alignment explanation
Indices: 112677852--112678101 Score: 345
Period size: 71 Copynumber: 3.5 Consensus size: 73
112677842 TGTGGCCCGA
112677852 GCTCAACTCACCTCTCGCAATATGAGTT-ATTCTTTTAAAAACAAAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTAAAAACAAAAATTGAAAATACCTCAGCG
112677916 TGTCCCT-AG
65 TGT-CCTGAG
* *
112677925 GCTCAACTCACCTCTCGCAATATG-GTTGATTTTTTGAAAAA-TAGAATTG-AAATACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-AAAAACAAAAATTGAAAATACCTCAGCG
112677987 TGTCCTGAG
65 TGTCCTGAG
* * *
112677996 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACCTCAGCGT
* *
112678059 ATCTTGAG
66 GTCCTGAG
*
112678067 GCT-AACTCACTTCTCGCAATATGAGTTGATTTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
112678102 TTGAAACATA
Statistics
Matches: 160, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
70 33 0.21
71 55 0.34
72 29 0.18
73 43 0.27
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (73 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACCTCAGCGT
GTCCTGAG
Found at i:112678235 original size:71 final size:73
Alignment explanation
Indices: 112678111--112678255 Score: 233
Period size: 72 Copynumber: 2.0 Consensus size: 73
112678101 TTTGAAACAT
* *
112678111 AAATTAAAAAAACGAAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC-TCGCAAT
1 AAATTAAAAAAACAAAAATTGAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTTCGCAAT
112678175 ATGAGTTG
66 ATGAGTTG
*
112678183 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTTCGCAA
1 AAATTAAAAAAACAAAAATTG-AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTTCGCAA
112678246 TATGAGTTG
65 TATGAGTTG
112678255 A
1 A
112678256 TTTTGAAAAG
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
71 32 0.47
72 36 0.53
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (73 bp):
AAATTAAAAAAACAAAAATTGAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTTCGCAAT
ATGAGTTG
Found at i:112678720 original size:74 final size:73
Alignment explanation
Indices: 112678402--112678934 Score: 754
Period size: 74 Copynumber: 7.5 Consensus size: 73
112678392 CATGTGTAAT
*
112678402 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-TTTTTTT-AAAAAAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTG-AAATACCT
*
112678465 CAACG-GT-
65 CAGCGTGTC
112678472 CTGA-GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATACCTC
112678534 A-CGTGTC
66 AGCGTGTC
112678541 CTGAGGCTCAACTCACCTTCTCGCAATATGAGTTGATTTTTTTG--AACAGAAATTGAAATACCT
1 CTGAGGCTCAACTCACC-TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATACCT
112678604 CAGCGTGT-
65 CAGCGTGTC
112678612 CTGAGGCTCAACTCACCTCTCGC-A-AT-A--TG--TTTTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAA-TACCT
112678670 CAGCGTGTC
65 CAGCGTGTC
*
112678679 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAACAGAAATTGAAATACC
112678744 TCAGCGTGT-
64 TCAGCGTGTC
* *
112678753 CAGAGGCTCAACTCACCTCTAGCAATATGAGTTGA---TTTTG-AAACA-AAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAA-TACCT
112678813 CAGCGTGTC
65 CAGCGTGTC
** *
112678822 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAA-TACCT
112678887 CAGCGTGTC
65 CAGCGTGTC
*
112678896 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
112678935 GAAAAACAAA
Statistics
Matches: 421, Mismatches: 13, Indels: 54
0.86 0.03 0.11
Matches are distributed among these distances:
63 7 0.02
65 16 0.04
66 13 0.03
67 35 0.08
68 37 0.09
69 84 0.20
70 23 0.05
71 56 0.13
72 12 0.03
73 10 0.02
74 93 0.22
75 13 0.03
76 22 0.05
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (73 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATACCTC
AGCGTGTC
Found at i:112678858 original size:143 final size:143
Alignment explanation
Indices: 112678402--112678948 Score: 843
Period size: 141 Copynumber: 3.9 Consensus size: 143
112678392 CATGTGTAAT
* *
112678402 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-TTTTTTT-AAAAAAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTG-AAATACCT
* *
112678465 CAACG-GTCTGA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAA
65 CAGCGTGTCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAACAGAAATTGAAA
112678528 -TACCTCA-CGTGTC
129 TTACCTCAGCGTGTC
112678541 CTGAGGCTCAACTCACCTTCTCGCAATATGAGTTGATTTTTTTG--AACAGAAATTGAAATACCT
1 CTGAGGCTCAACTCACC-TCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATACCT
*
112678604 CAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATAT--GTT--TTTTGAAAACAGAAATTGAAAT
65 CAGCGTGTCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAGAAATTGAAAT
112678665 TACCTCAGCGTGTC
130 TACCTCAGCGTGTC
112678679 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGACAACAGAAATTGAAATACC
*
112678744 TCAGCGTGTCAGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAACA-AAATTGAAA
64 TCAGCGTGTCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAGAAATTGAAA
112678807 TTACCTCAGCGTGTC
129 TTACCTCAGCGTGTC
**
112678822 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAA-TACCT
*
112678887 CAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT
65 CAGCGTGT-CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAGAAATT
112678949 AAAAGGCTTA
Statistics
Matches: 381, Mismatches: 7, Indels: 33
0.90 0.02 0.08
Matches are distributed among these distances:
136 21 0.06
137 25 0.07
138 23 0.06
139 40 0.10
140 33 0.09
141 107 0.28
142 13 0.03
143 99 0.26
144 5 0.01
145 10 0.03
146 5 0.01
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (143 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATACCTC
AGCGTGTCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATT
ACCTCAGCGTGTC
Found at i:112679089 original size:66 final size:68
Alignment explanation
Indices: 112678952--112679121 Score: 195
Period size: 66 Copynumber: 2.5 Consensus size: 68
112678942 AAAAATTAAA
* ** * **
112678952 AGGCTTAACTCAC-TCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTT-TAACATAAACTAAAAATACCTCAACGTGC
112679016 CCCG
65 CCCG
* * *
112679020 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGA-A-AAATTAAAAATACCTCAACGTGTC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAACATAAACTAAAAATACCTCAACGTGCC
**
112679083 TTG
66 CCG
112679086 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
112679122 CCTTGAAAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
65 1 0.01
66 55 0.62
67 1 0.01
68 13 0.15
69 19 0.21
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.29
Consensus pattern (68 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAACATAAACTAAAAATACCTCAACGTGCC
CCG
Found at i:112682905 original size:32 final size:32
Alignment explanation
Indices: 112682864--112682928 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
112682854 ATTATCTTTT
112682864 GGGCTTGCTCGATTCAGGTCACGGTAATCCAC
1 GGGCTTGCTCGATTCAGGTCACGGTAATCCAC
112682896 GGGCTTGCTCGATTCAGGTCACGGTAATCCAC
1 GGGCTTGCTCGATTCAGGTCACGGTAATCCAC
112682928 G
1 G
112682929 CACATTCGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (32 bp):
GGGCTTGCTCGATTCAGGTCACGGTAATCCAC
Found at i:112687450 original size:7 final size:7
Alignment explanation
Indices: 112687438--112687467 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
112687428 ATAATAAAAT
112687438 ATATAAA
1 ATATAAA
112687445 ATATAAA
1 ATATAAA
112687452 ATATTAAA
1 ATA-TAAA
112687460 ATATAAA
1 ATATAAA
112687467 A
1 A
112687468 ATATTAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
ATATAAA
Done.