Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 339 of 362
Found at i:112687452 original size:16 final size:16
Alignment explanation
Indices: 112687431--112687471 Score: 68
Period size: 15 Copynumber: 2.7 Consensus size: 16
112687421 GATGTGAATA
112687431 ATAAAATATATAAAAT
1 ATAAAATATATAAAAT
112687447 ATAAAATAT-TAAAAT
1 ATAAAATATATAAAAT
112687462 ATAAAA-ATAT
1 ATAAAATATAT
112687472 TAGAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 2 0.08
15 13 0.54
16 9 0.38
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAAATATATAAAAT
Found at i:112687454 original size:24 final size:24
Alignment explanation
Indices: 112687427--112687482 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
112687417 TAATGATGTG
112687427 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATATA-AAAATATTAA
* *
112687451 AATATTAAAATATAAAAATATTAG
1 AATAATAAAATATAAAAATATTAA
112687475 AATAATAA
1 AATAATAA
112687483 TTAATATTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 6 0.21
24 22 0.79
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATAAAAATATTAA
Found at i:112687461 original size:8 final size:8
Alignment explanation
Indices: 112687427--112687478 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
112687417 TAATGATGTG
*
112687427 AATAATAA
1 AATATTAA
112687435 AATATATAA
1 AATAT-TAA
112687444 AATA-TAA
1 AATATTAA
112687451 AATATTAA
1 AATATTAA
*
112687459 AATATAAA
1 AATATTAA
*
112687467 AATATTAG
1 AATATTAA
112687475 AATA
1 AATA
112687479 ATAATTAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:112687472 original size:16 final size:16
Alignment explanation
Indices: 112687433--112687505 Score: 69
Period size: 16 Copynumber: 4.4 Consensus size: 16
112687423 TGTGAATAAT
112687433 AAAATATATAAAATAT-
1 AAAATAT-TAAAATATA
112687449 AAAATATTAAAATATA
1 AAAATATTAAAATATA
*
112687465 AAAATATTAGAATAATA
1 AAAATATTAAAAT-ATA
*
112687482 ATTAATATTGACAAATA-A
1 A-AAATATT-A-AAATATA
112687500 AAAATA
1 AAAATA
112687506 AAATAGAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
15 8 0.17
16 19 0.40
17 8 0.17
18 8 0.17
19 2 0.04
20 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (16 bp):
AAAATATTAAAATATA
Found at i:112687641 original size:20 final size:20
Alignment explanation
Indices: 112687589--112687645 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
112687579 ATACTACATC
*
112687589 AATATGTACATATATAAAAAA
1 AATATGTACATA-ATATAAAA
* * *
112687610 AATACGT-GATAATATTAAA
1 AATATGTACATAATATAAAA
112687629 AATATGTACATAATATA
1 AATATGTACATAATATA
112687646 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AATATGTACATAATATAAAA
Found at i:112687687 original size:22 final size:24
Alignment explanation
Indices: 112687624--112687688 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
112687614 CGTGATAATA
*
112687624 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
112687649 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
112687672 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
112687689 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:112687840 original size:23 final size:24
Alignment explanation
Indices: 112687714--112687842 Score: 83
Period size: 23 Copynumber: 5.5 Consensus size: 24
112687704 ATATATATAT
*
112687714 ATATA-ATAATATAATATTAAAGAT
1 ATATACATAATATAATATT-AAGAA
* * *
112687738 ATATACATAA-ATAGTATAAATATA
1 ATATACATAATATAATATTAAGA-A
* *
112687762 TATATACGTAATATAGA-ATTTA-AA
1 -ATATACATAATATA-ATATTAAGAA
* * *
112687786 ATATACCTAATATATTA-AAAG-A
1 ATATACATAATATAATATTAAGAA
*
112687808 ATATATATAATATAATATTAAGAA
1 ATATACATAATATAATATTAAGAA
112687832 ATATA-ATAATA
1 ATATACATAATA
112687843 ACAAAAAAGG
Statistics
Matches: 80, Mismatches: 16, Indels: 19
0.70 0.14 0.17
Matches are distributed among these distances:
22 16 0.20
23 26 0.32
24 18 0.22
25 14 0.17
26 6 0.08
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.36
Consensus pattern (24 bp):
ATATACATAATATAATATTAAGAA
Found at i:112687842 original size:45 final size:48
Alignment explanation
Indices: 112687710--112687842 Score: 134
Period size: 45 Copynumber: 2.8 Consensus size: 48
112687700 AAAAATATAT
* *
112687710 ATATATATAATAATATAATATTAAAGATATATACATAA-ATAGTATAAAT
1 ATATATAT-ATAATATAATATT-AAGAAATATACATAATATAGTATAAAG
* * *
112687759 ATATATATACGTAATATAGA-ATTTA-AAATATACCTAATATATTA-AAAG
1 ATATATATA--TAATATA-ATATTAAGAAATATACATAATATAGTATAAAG
112687807 A-ATATATATAATATAATATTAAGAAATATA-ATAATA
1 ATATATATATAATATAATATTAAGAAATATACATAATA
112687843 ACAAAAAAGG
Statistics
Matches: 71, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
44 1 0.01
45 16 0.23
46 7 0.10
47 7 0.10
48 15 0.21
49 14 0.20
50 10 0.14
51 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (48 bp):
ATATATATATAATATAATATTAAGAAATATACATAATATAGTATAAAG
Found at i:112688366 original size:30 final size:30
Alignment explanation
Indices: 112688330--112688503 Score: 296
Period size: 30 Copynumber: 5.8 Consensus size: 30
112688320 TAGGTACAAG
* *
112688330 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
112688360 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
112688390 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
112688420 TGGTGGTGGAAAA-GAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
112688449 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
112688479 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
112688504 TGAGAAAAGT
Statistics
Matches: 135, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
29 28 0.21
30 107 0.79
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:112688460 original size:59 final size:59
Alignment explanation
Indices: 112688330--112688503 Score: 321
Period size: 59 Copynumber: 2.9 Consensus size: 59
112688320 TAGGTACAAG
*
112688330 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGG-AAAAGAGTGGCTAGTGGAGT
112688390 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
112688449 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAA-GAGTGGCTAGT
112688504 TGAGAAAAGT
Statistics
Matches: 112, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
59 63 0.56
60 49 0.44
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (59 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
Found at i:112688499 original size:89 final size:90
Alignment explanation
Indices: 112688330--112688503 Score: 296
Period size: 89 Copynumber: 1.9 Consensus size: 90
112688320 TAGGTACAAG
* *
112688330 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
1 TGGTGGTGGAGAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
*
112688395 GTGGAAAAGGTGTGGCTAGTGGAGT
66 GTGGAAAAGGAGTGGCTAGTGGAGT
* *
112688420 TGGTGGTGGA-AAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTG
1 TGGTGGTGGAGAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
112688484 GTGGAAAAGGAGTGGCTAGT
66 GTGGAAAAGGAGTGGCTAGT
112688504 TGAGAAAAGT
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 69 0.87
90 10 0.13
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (90 bp):
TGGTGGTGGAGAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
GTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:112701564 original size:12 final size:12
Alignment explanation
Indices: 112701547--112701582 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
112701537 CACTCAAGAG
*
112701547 CTTTCTCCTCTC
1 CTTTCTCTTCTC
112701559 CTTTCTCTTCTC
1 CTTTCTCTTCTC
112701571 CTTTCTCTTCTC
1 CTTTCTCTTCTC
112701583 TAACTTTCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (12 bp):
CTTTCTCTTCTC
Found at i:112701737 original size:26 final size:26
Alignment explanation
Indices: 112701701--112701784 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
112701691 TATGAAATTC
112701701 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
112701727 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
112701753 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
112701779 TTATCA
1 TTATCA
112701785 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:112704197 original size:27 final size:26
Alignment explanation
Indices: 112704138--112704198 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
112704128 CCCCCCCAAA
*
112704138 AAAAACCTAACCCCCCCCAAAAAAAAG
1 AAAAACCTAA-CCCCCCCAAAAAAAAC
*
112704165 AAAAACCTAA-CCCTCCAAAAAAAACC
1 AAAAACCTAACCCCCCCAAAAAAAA-C
112704191 AAGAAACC
1 AA-AAACC
112704199 CTAGCCACCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 13 0.43
26 2 0.07
27 15 0.50
ACGTcount: A:0.57, C:0.34, G:0.03, T:0.05
Consensus pattern (26 bp):
AAAAACCTAACCCCCCCAAAAAAAAC
Found at i:112704999 original size:11 final size:13
Alignment explanation
Indices: 112704983--112705015 Score: 52
Period size: 11 Copynumber: 2.7 Consensus size: 13
112704973 AATACGTATA
112704983 TATATATATT-T-
1 TATATATATTATG
112704994 TATATATATTATG
1 TATATATATTATG
112705007 TATATATAT
1 TATATATAT
112705016 ATTTTTAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.50
12 1 0.05
13 9 0.45
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (13 bp):
TATATATATTATG
Found at i:112704999 original size:15 final size:15
Alignment explanation
Indices: 112704979--112705022 Score: 58
Period size: 13 Copynumber: 3.1 Consensus size: 15
112704969 TTCTAATACG
112704979 TATATATATATATTT
1 TATATATATATATTT
*
112704994 TATATATAT-TA-TG
1 TATATATATATATTT
112705007 TATATATATAT-TTT
1 TATATATATATATTT
112705021 TA
1 TA
112705023 ATGCCATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 10 0.40
14 6 0.24
15 9 0.36
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (15 bp):
TATATATATATATTT
Found at i:112707025 original size:12 final size:12
Alignment explanation
Indices: 112707008--112707043 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
112706998 ATTCATTTGA
112707008 CATTCATGCATT
1 CATTCATGCATT
112707020 CATTCATGCATT
1 CATTCATGCATT
*
112707032 CATTCATACATT
1 CATTCATGCATT
112707044 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:112715404 original size:71 final size:69
Alignment explanation
Indices: 112715302--112715476 Score: 190
Period size: 71 Copynumber: 2.5 Consensus size: 69
112715292 TTTTCAAGGG
* * * *
112715302 AAATCAACTCATATTGCGAG-AGATAATTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
112715366 GTTTT
65 GTTTT
*** ** *
112715371 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGGTACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
112715436 TGTTTT
64 TGTTTT
** * *
112715442 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
112715477 TTTAATTTTT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
69 31 0.35
71 56 0.63
72 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:112715476 original size:69 final size:70
Alignment explanation
Indices: 112715347--112715477 Score: 192
Period size: 69 Copynumber: 1.9 Consensus size: 70
112715337 CAAGACACGT
* *
112715347 TGAGGTATTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGG
1 TGAGGTATTTTTAATTTATGTTTT-AAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTGGG
112715412 GTACGC
65 GTACGC
* ** *
112715418 TGAGGTATTTTTAGTTTATGTTTT-AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTT
1 TGAGGTATTTTTAATTTATGTTTTAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTT
112715478 TTAATTTTTG
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
69 32 0.59
71 22 0.41
ACGTcount: A:0.25, C:0.11, G:0.24, T:0.40
Consensus pattern (70 bp):
TGAGGTATTTTTAATTTATGTTTTAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTGGGG
TACGC
Found at i:112715597 original size:72 final size:71
Alignment explanation
Indices: 112715476--112715641 Score: 217
Period size: 72 Copynumber: 2.3 Consensus size: 71
112715466 GAGTTAAGCC
** * * ** *
112715476 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGGCACCC
112715540 TGAGGTA
65 TGAGGTA
*
112715547 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGTCACCC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGGCACCC
112715612 TGAGGTA
65 TGAGGTA
* *
112715619 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
112715642 ACGTTGTTCA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
71 12 0.14
72 67 0.81
73 4 0.05
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAAGGCACCCT
GAGGTA
Found at i:112716037 original size:139 final size:140
Alignment explanation
Indices: 112715574--112716088 Score: 926
Period size: 140 Copynumber: 3.7 Consensus size: 140
112715564 TTAATTTCAA
* * *
112715574 CTCATATTGCGAGAGCTGAGTTGAGCCTCAAGTCACCCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
112715639 TTTACGTTGTTCAAGAATCAACTCATATTGCGAG-AGATGGGTTGAACCTTTTAATTTTTACTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAG-TGGGTTGAACCTTTTAATTTCTACTTT
112715703 TTCAAAATCAG
130 TTCAAAATCAG
*
112715714 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCATTTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
112715779 TTTACGTTGTTCAAGAATCAACTCATATTGAGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
112715844 TCAAAATCAG
131 TCAAAATCAG
*
112715854 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
112715919 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGT-GGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
112715983 TCAAAATCAG
131 TCAAAATCAG
*
112715993 CTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
112716058 TTTACGTTGTTCAAGAATCAACTCATATTGC
66 TTTACGTTGTTCAAGAATCAACTCATATTGC
112716089 TTAATCCTGT
Statistics
Matches: 361, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
139 130 0.36
140 230 0.64
141 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:112716075 original size:279 final size:280
Alignment explanation
Indices: 112715574--112716087 Score: 942
Period size: 279 Copynumber: 1.8 Consensus size: 280
112715564 TTAATTTCAA
*
112715574 CTCATATTGCGAGAGCTGAGTTGAGCCTCAAGTCACCCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGCTGAGTTGAGCCTCAAGTCACCCTAAGGTATTTTCAATTTCTGTTTTCAA
*
112715639 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGATGGGTTGAACCTTTTAATTTTTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGATGGGTTGAACCTTTTAATTTCTACTTTT
*
112715704 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCATTTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
112715769 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGAGAGAGGTGGGTTGAACCTTTTAAT
196 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGAGAGAGGTGGGTTGAACCTTTTAAT
112715834 TTCTACTTTTTCAAAATCAG
261 TTCTACTTTTTCAAAATCAG
* * *
112715854 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGCTGAGTTGAGCCTCAAGTCACCCTAAGGTATTTTCAATTTCTGTTTTCAA
112715919 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGA-A-GTGGTTGAACCTTTTAATTTCTACTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGATG-GGTTGAACCTTTTAATTTCTACTTT
*
112715982 TTCAAAATCAGCTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATT
130 TTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATT
112716047 TCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTG
195 TCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTG
112716088 CTTAATCCTG
Statistics
Matches: 226, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
278 1 0.00
279 129 0.57
280 96 0.42
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (280 bp):
CTCATATTGCGAGAGCTGAGTTGAGCCTCAAGTCACCCTAAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGATGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGAGAGAGGTGGGTTGAACCTTTTAAT
TTCTACTTTTTCAAAATCAG
Found at i:112716682 original size:20 final size:20
Alignment explanation
Indices: 112716654--112716697 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
112716644 ACCCTCGTAA
*
112716654 ACTTCTTCCAAGATTAACTT
1 ACTTATTCCAAGATTAACTT
112716674 ACTTATTCCAAGATTAACTT
1 ACTTATTCCAAGATTAACTT
112716694 ACTT
1 ACTT
112716698 CCACGGTGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.41
Consensus pattern (20 bp):
ACTTATTCCAAGATTAACTT
Found at i:112722609 original size:17 final size:17
Alignment explanation
Indices: 112722587--112722620 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
112722577 GATATGATAC
112722587 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
112722604 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
112722621 CCGGGAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:112722918 original size:23 final size:22
Alignment explanation
Indices: 112722875--112722932 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
112722865 AAAAGGTATC
* *
112722875 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
112722896 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
112722919 TGCATATCATATCT
1 TACAAATCATATCT
112722933 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:112722935 original size:19 final size:19
Alignment explanation
Indices: 112722911--112722965 Score: 94
Period size: 18 Copynumber: 2.9 Consensus size: 19
112722901 AATCATATCT
112722911 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
112722930 TCTAAGATTGCA-ATAATA
1 TCTAAGATTGCATATCATA
112722948 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
112722966 TGAATATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
18 17 0.52
19 16 0.48
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:112723121 original size:21 final size:20
Alignment explanation
Indices: 112723084--112723122 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
112723074 TTGGACTTTG
**
112723084 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
112723104 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
112723123 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:112723852 original size:18 final size:18
Alignment explanation
Indices: 112723829--112723868 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
112723819 AATAAATAAA
112723829 ATCTTGATTTTTAGTAAC
1 ATCTTGATTTTTAGTAAC
112723847 ATCTTGATTTTTAGTAAC
1 ATCTTGATTTTTAGTAAC
112723865 ATCT
1 ATCT
112723869 GTCAAGTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.50
Consensus pattern (18 bp):
ATCTTGATTTTTAGTAAC
Found at i:112729233 original size:44 final size:45
Alignment explanation
Indices: 112729179--112729271 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 45
112729169 TACAATATTT
112729179 ATTCCATTCAACCAAACACA-AGAA-TACT-ATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACA-ATA-AATTACTGATTACAGCTCTATTCC
112729223 ATTCCATTCAACCAAACAATTAAATTACTGATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAA-TAAATTACTGATTACAGCTCTATTCC
112729269 ATT
1 ATT
112729272 ACAGCCCTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
43 1 0.02
44 20 0.44
45 5 0.11
46 19 0.42
ACGTcount: A:0.38, C:0.27, G:0.04, T:0.31
Consensus pattern (45 bp):
ATTCCATTCAACCAAACAATAAATTACTGATTACAGCTCTATTCC
Found at i:112729274 original size:16 final size:16
Alignment explanation
Indices: 112729253--112729307 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
112729243 TAAATTACTG
*
112729253 ATTACAGCTCTATTCC
1 ATTACAGCCCTATTCC
*
112729269 ATTACAGCCCTATTCA
1 ATTACAGCCCTATTCC
*
112729285 ATTACAACCCTATTCC
1 ATTACAGCCCTATTCC
112729301 ATTACAG
1 ATTACAG
112729308 TGAACAAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.31, C:0.31, G:0.05, T:0.33
Consensus pattern (16 bp):
ATTACAGCCCTATTCC
Found at i:112729951 original size:17 final size:17
Alignment explanation
Indices: 112729929--112729963 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
112729919 ATATAATATG
112729929 TGTATATAA-AATGGTGT
1 TGTATA-AATAATGGTGT
112729946 TGTATAAATAATGGTGT
1 TGTATAAATAATGGTGT
112729963 T
1 T
112729964 AGTGGTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (17 bp):
TGTATAAATAATGGTGT
Found at i:112732648 original size:25 final size:27
Alignment explanation
Indices: 112732596--112732672 Score: 73
Period size: 27 Copynumber: 2.7 Consensus size: 27
112732586 TGTATAGTAG
* * *
112732596 TTTAAAATAAATAATATATGGAAAAAGAAC
1 TTTAAAATAAATAACATAT---AAGAGAGC
*
112732626 TTTAAAATAAATAACATATAAGAGAGT
1 TTTAAAATAAATAACATATAAGAGAGC
* *
112732653 TTTAACATAAATAATATATA
1 TTTAAAATAAATAACATATA
112732673 TATAAAGACT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
27 23 0.56
30 18 0.44
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTAAAATAAATAACATATAAGAGAGC
Found at i:112732757 original size:20 final size:20
Alignment explanation
Indices: 112732718--112732757 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
112732708 AATTTTTTAG
*
112732718 AAATAAATAAATGAATAAGT
1 AAATAAATAAATGAACAAGT
* *
112732738 AAATAGATAAATGAGCAAGT
1 AAATAAATAAATGAACAAGT
112732758 TTAGCAAACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.60, C:0.03, G:0.15, T:0.23
Consensus pattern (20 bp):
AAATAAATAAATGAACAAGT
Found at i:112736987 original size:23 final size:22
Alignment explanation
Indices: 112736959--112737003 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
112736949 AAACTAAATC
112736959 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
112736982 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
112737004 AAGATTGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:112737038 original size:35 final size:37
Alignment explanation
Indices: 112736975--112737072 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
112736965 ATTACAAAAT
112736975 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
112737011 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
*
112737046 CATATCATACCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
112737073 TGAAGATTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 22 0.39
36 18 0.32
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:112737051 original size:14 final size:15
Alignment explanation
Indices: 112736996--112737051 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
112736986 AGATTGCATA
112736996 TCATATCTAAGATTG
1 TCATATCTAAGATTG
112737011 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
112737029 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
112737046 -CATATC
1 TCATATC
112737052 ATACCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:112737080 original size:17 final size:19
Alignment explanation
Indices: 112736982--112737072 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
112736972 AATCATATCT
112736982 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
112737001 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
112737019 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
112737036 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
112737055 CCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
112737073 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:112737228 original size:21 final size:20
Alignment explanation
Indices: 112737191--112737229 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
112737181 TTGGACGACG
**
112737191 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
112737211 TTTTATTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
112737230 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.13, C:0.03, G:0.13, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:112737549 original size:44 final size:45
Alignment explanation
Indices: 112737444--112737560 Score: 164
Period size: 44 Copynumber: 2.6 Consensus size: 45
112737434 TGATCTGTTT
* * *
112737444 CCCGTCTAATACAGAGACGCCAAATCTGTTATATTCGATCTGCTC
1 CCCGTCTAATACAGAGAAGCCAAATCTGCTATATTCAATCTGCTC
* * *
112737489 CCCGTCTAATATAGAGAAGCCAAATCTGCT-TCTTCAATTTGCTC
1 CCCGTCTAATACAGAGAAGCCAAATCTGCTATATTCAATCTGCTC
*
112737533 CCCGTCTAATACAGAGATGCCAAATCTG
1 CCCGTCTAATACAGAGAAGCCAAATCTG
112737561 GCATCTTGGA
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 37 0.58
45 27 0.42
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (45 bp):
CCCGTCTAATACAGAGAAGCCAAATCTGCTATATTCAATCTGCTC
Found at i:112737719 original size:78 final size:78
Alignment explanation
Indices: 112737590--112737884 Score: 475
Period size: 78 Copynumber: 3.8 Consensus size: 78
112737580 ATGTAAACAC
*
112737590 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
112737655 TGAATCTGCTTCA
66 TGGATCTGCTTCA
* * *
112737668 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCTAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
112737732 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
*
112737746 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
112737811 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * **
112737824 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCTGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
112737885 TGTTTCTTCG
Statistics
Matches: 202, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
77 2 0.01
78 198 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:112737779 original size:37 final size:37
Alignment explanation
Indices: 112737730--112737857 Score: 107
Period size: 37 Copynumber: 3.4 Consensus size: 37
112737720 TGCTAAATCA
*
112737730 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
** * ** * *
112737767 TCTTCGATCTGCTCTCCGTCTAA--TACAGAGATGCCAAATCA
1 TCTTCGATCTGCT-TCAAT-GAAGGT-CAGATCTG-C-TAT-G
*
112737808 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
112737845 TCTTCGATCTGCT
1 TCTTCGATCTGCT
112737858 CTCTGTCGAA
Statistics
Matches: 66, Mismatches: 17, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
37 25 0.38
38 11 0.17
39 6 0.09
40 11 0.17
41 13 0.20
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.34
Consensus pattern (37 bp):
TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
Found at i:112738413 original size:21 final size:20
Alignment explanation
Indices: 112738388--112738434 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
112738378 ACGTCACCAG
*
112738388 TCATTCTTTC-GTCGAAGTTTA
1 TCATTCTTTCTCTCGAAG--TA
*
112738409 TCATTATTTCTCTCGAAGTA
1 TCATTCTTTCTCTCGAAGTA
112738429 TCATTC
1 TCATTC
112738435 CTACTCAGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 7 0.32
21 9 0.41
22 6 0.27
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (20 bp):
TCATTCTTTCTCTCGAAGTA
Found at i:112748252 original size:20 final size:18
Alignment explanation
Indices: 112748216--112748260 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
112748206 AAACCTTGAA
112748216 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
112748234 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
112748254 -TTTCCCT
1 TTTTCCCT
112748261 GCTTTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 10 0.40
20 7 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:112748495 original size:20 final size:20
Alignment explanation
Indices: 112748472--112748511 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
112748462 TATAATTATT
*
112748472 TAATTAATAAATATCTTTTA
1 TAATTAATAAATATATTTTA
112748492 TAATTAATAAATATATTTTA
1 TAATTAATAAATATATTTTA
112748512 ATACTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTAATAAATATATTTTA
Found at i:112754754 original size:45 final size:45
Alignment explanation
Indices: 112754702--112754789 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
112754692 TATGTAATTT
*
112754702 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACACCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGACACCC
112754747 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGACAC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGACAC
112754790 ATGTTTTGGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGACACCC
Found at i:112756137 original size:40 final size:40
Alignment explanation
Indices: 112756031--112756146 Score: 123
Period size: 40 Copynumber: 2.9 Consensus size: 40
112756021 CGGCGTTTTT
* *
112756031 TATAGGTACATCTTTAGTAGCGTTTTTTAAAAAGCGCCGC
1 TATAGCTACATCTTTAGCAGCGTTTTTTAAAAAGCGCCGC
* * *
112756071 TATAGGTACACCTTTAGC-GACATTTTTTAAAAAGCGCCGC
1 TATAGCTACATCTTTAGCAG-CGTTTTTTAAAAAGCGCCGC
*
112756111 TA-ATGCT-CGATCTTTAGCAGCG-TTTTTCAAAAGCGC
1 TATA-GCTAC-ATCTTTAGCAGCGTTTTTTAAAAAGCGC
112756147 TGCAAAAGAG
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
39 16 0.25
40 48 0.74
41 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (40 bp):
TATAGCTACATCTTTAGCAGCGTTTTTTAAAAAGCGCCGC
Found at i:112756238 original size:40 final size:40
Alignment explanation
Indices: 112756170--112756304 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 40
112756160 TGGAAAACAG
* * *
112756170 CTTTAACGGCGC-CTTTTAAAAACACCGCTATATGTACAC
1 CTTTAGCGGCGCTTTTTTAAAAACGCCGCTATATGTACAC
*
112756209 CTTTAGCGGCGCTTTTTTAAAAACGCCGCTATAGGTACAC
1 CTTTAGCGGCGCTTTTTTAAAAACGCCGCTATATGTACAC
* * * **
112756249 CTTTAGCGGCGCTTTTTAAAAAACGCTGCTA-ATGTTCGTT
1 CTTTAGCGGCGCTTTTTTAAAAACGCCGCTATATGTAC-AC
112756289 CTTTAGCGGCGCTTTT
1 CTTTAGCGGCGCTTTT
112756305 AAAAAAACAC
Statistics
Matches: 84, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 15 0.18
40 69 0.82
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (40 bp):
CTTTAGCGGCGCTTTTTTAAAAACGCCGCTATATGTACAC
Found at i:112757133 original size:22 final size:21
Alignment explanation
Indices: 112757108--112757158 Score: 75
Period size: 22 Copynumber: 2.4 Consensus size: 21
112757098 GAGTTACTAT
*
112757108 TTTAAGGATTGTGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
*
112757130 TTTAAGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
112757151 TTTAAGGA
1 TTTAAGGA
112757159 GTGAGGTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.43
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:112757437 original size:22 final size:22
Alignment explanation
Indices: 112757412--112757454 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
112757402 ATTTATGATA
* *
112757412 TAGGGTTTTGGGTTTAAGGGTT
1 TAGGGGTTGGGGTTTAAGGGTT
112757434 TAGGGGTTGGGGTTTAAGGGT
1 TAGGGGTTGGGGTTTAAGGGT
112757455 AAATAAAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.00, G:0.47, T:0.40
Consensus pattern (22 bp):
TAGGGGTTGGGGTTTAAGGGTT
Found at i:112762550 original size:36 final size:32
Alignment explanation
Indices: 112762505--112762605 Score: 76
Period size: 36 Copynumber: 2.9 Consensus size: 32
112762495 TATATAATAG
112762505 TTAAGTTTAGAAATACAATTTAAAATAATTTTTATT
1 TTAA-TTTAGAAATA-AATTTAAAAT-ATTTTT-TT
* * * *
112762541 TTAATTTTAGGAATAATTTTTTAAATATATATTTT
1 TTAA-TTTAGAAATAA-ATTTAAAATAT-TTTTTT
*
112762576 TTAATTTAGAAATAAAATTCAAAATCATTT
1 TTAATTTAGAAAT-AAATTTAAAAT-ATTT
112762606 AGAAATAATA
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
34 15 0.29
35 13 0.25
36 23 0.45
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (32 bp):
TTAATTTAGAAATAAATTTAAAATATTTTTTT
Found at i:112762762 original size:13 final size:13
Alignment explanation
Indices: 112762709--112762764 Score: 53
Period size: 13 Copynumber: 4.3 Consensus size: 13
112762699 TAAAGTTTTA
112762709 TTTATTAAATAAAT
1 TTTATTAAAT-AAT
112762723 TTT-TTAAATAA-
1 TTTATTAAATAAT
* * *
112762734 TTTATCTCACTTAT
1 TTTAT-TAAATAAT
112762748 TTTATTAAATAAT
1 TTTATTAAATAAT
112762761 TTTA
1 TTTA
112762765 AAATATTTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
11 3 0.09
12 3 0.09
13 19 0.58
14 8 0.24
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTATTAAATAAT
Found at i:112763375 original size:18 final size:18
Alignment explanation
Indices: 112763348--112763382 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
112763338 CTAAATTGAA
* *
112763348 AAAACTCAAACATAAAAT
1 AAAACCCAAAAATAAAAT
112763366 AAAACCCAAAAATAAAA
1 AAAACCCAAAAATAAAA
112763383 AATGTGGCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.17, G:0.00, T:0.11
Consensus pattern (18 bp):
AAAACCCAAAAATAAAAT
Found at i:112764454 original size:21 final size:21
Alignment explanation
Indices: 112764381--112764456 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 21
112764371 TTATCAATTT
* * *
112764381 TTTAAAAAATAATTATATATTT
1 TTTAAAAAATATTTATTTA-TA
* * *
112764403 TTTAAAAATTACTTTAATTAAA
1 TTTAAAAAATA-TTTATTTATA
* *
112764425 TGTATAAAATATTTATTTATA
1 TTTAAAAAATATTTATTTATA
112764446 TTTAAAAAATA
1 TTTAAAAAATA
112764457 AAATAAAAAT
Statistics
Matches: 40, Mismatches: 13, Indels: 3
0.71 0.23 0.05
Matches are distributed among these distances:
21 17 0.43
22 18 0.45
23 5 0.12
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (21 bp):
TTTAAAAAATATTTATTTATA
Found at i:112767806 original size:24 final size:24
Alignment explanation
Indices: 112767761--112767807 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
112767751 CCCCCATTAG
* *
112767761 CAAATATCGTATGACCCCTACCAA
1 CAAAAATCGTATAACCCCTACCAA
* *
112767785 CAAAAATCGTATAATCCTTACCA
1 CAAAAATCGTATAACCCCTACCA
112767808 GTAGGTGCAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.30, G:0.06, T:0.23
Consensus pattern (24 bp):
CAAAAATCGTATAACCCCTACCAA
Found at i:112770769 original size:22 final size:23
Alignment explanation
Indices: 112770731--112770790 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 23
112770721 AATAAAGACA
112770731 TAAAATAAATAATATAAAACAATT-
1 TAAAATAAAT-A-ATAAAACAATTC
*
112770755 TAAAATAAATAATAAGACAATTC
1 TAAAATAAATAATAAAACAATTC
*
112770778 T-AAACAAATAATA
1 TAAAATAAATAATA
112770791 CATAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 21 0.64
23 2 0.06
24 10 0.30
ACGTcount: A:0.65, C:0.07, G:0.02, T:0.27
Consensus pattern (23 bp):
TAAAATAAATAATAAAACAATTC
Found at i:112770896 original size:27 final size:28
Alignment explanation
Indices: 112770853--112770907 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
112770843 AATAATTTAA
* *
112770853 AAAATTAATATACAAAACAGTTTAAAAT
1 AAAATTAATATACAAAACAATCTAAAAT
*
112770881 AAAA-TAATATATAAAACAATCTAAAAT
1 AAAATTAATATACAAAACAATCTAAAAT
112770908 GACTAATTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (28 bp):
AAAATTAATATACAAAACAATCTAAAAT
Found at i:112771066 original size:26 final size:26
Alignment explanation
Indices: 112770992--112771204 Score: 127
Period size: 26 Copynumber: 8.2 Consensus size: 26
112770982 TACATAATAT
* * *
112770992 ATAAA-AA-ATATAAAACAGTTTTAA
1 ATAAATAATATATAAAATAATTTAAA
* *
112771016 A-AAATAATAATGTAAAAGAATTTTAAA
1 ATAAATAAT-ATATAAAATAA-TTTAAA
* *
112771043 GTAAATAACATATAAAATAATTTAAA
1 ATAAATAATATATAAAATAATTTAAA
** * * *
112771069 CCAAGTAATACATATAAA-ACTTTAAA
1 ATAAATAATATATA-AAATAATTTAAA
** * *
112771095 ATTGATAATATACACAAA-GATTTAAA
1 ATAAATAATATATA-AAATAATTTAAA
*
112771121 ATAAATTATATATGGAAAATAA-TTAAA
1 ATAAATAATATAT--AAAATAATTTAAA
*
112771148 ATAAATAATATGTAAAAATAATTTAAA
1 ATAAATAATATAT-AAAATAATTTAAA
*
112771175 ATAAATAATACATAAAAT--TTTAAA
1 ATAAATAATATATAAAATAATTTAAA
*
112771199 GTAAAT
1 ATAAAT
112771205 GACGTACAAA
Statistics
Matches: 144, Mismatches: 35, Indels: 20
0.72 0.18 0.10
Matches are distributed among these distances:
23 3 0.02
24 14 0.10
26 67 0.47
27 52 0.36
28 8 0.06
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (26 bp):
ATAAATAATATATAAAATAATTTAAA
Found at i:112771148 original size:27 final size:28
Alignment explanation
Indices: 112771114--112771184 Score: 96
Period size: 27 Copynumber: 2.6 Consensus size: 28
112771104 ATACACAAAG
*
112771114 ATTTAAAATAAATTATATATG-GAAAATA
1 ATTTAAAATAAATTA-ATATGTAAAAATA
112771142 A-TTAAAATAAA-TAATATGTAAAAATA
1 ATTTAAAATAAATTAATATGTAAAAATA
112771168 ATTTAAAATAAA-TAATA
1 ATTTAAAATAAATTAATA
112771185 CATAAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
25 5 0.12
26 9 0.22
27 25 0.62
28 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (28 bp):
ATTTAAAATAAATTAATATGTAAAAATA
Found at i:112771155 original size:13 final size:13
Alignment explanation
Indices: 112771137--112771183 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
112771127 TATATATGGA
112771137 AAATAATTAAAAT
1 AAATAATTAAAAT
**
112771150 AAATAATATGTAA-
1 AAATAAT-TAAAAT
112771163 AAATAATTTAAAAT
1 AAATAA-TTAAAAT
112771177 AAATAAT
1 AAATAAT
112771184 ACATAAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
13 17 0.63
14 10 0.37
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (13 bp):
AAATAATTAAAAT
Found at i:112771586 original size:26 final size:24
Alignment explanation
Indices: 112771533--112771586 Score: 63
Period size: 26 Copynumber: 2.2 Consensus size: 24
112771523 TAAAAGTAGA
* *
112771533 AAATAATAATAAAACAAACAATTT
1 AAATAATAATAAAACAAACAACTG
*
112771557 AAATAATTAAATAAAACAAAGAACTG
1 AAATAA-T-AATAAAACAAACAACTG
112771583 AAAT
1 AAAT
112771587 TAAATGCGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 6 0.24
25 1 0.04
26 18 0.72
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (24 bp):
AAATAATAATAAAACAAACAACTG
Found at i:112772301 original size:19 final size:18
Alignment explanation
Indices: 112772273--112772308 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
112772263 ATCGAAGGTG
112772273 CGTTTTTTATTACTATTT
1 CGTTTTTTATTACTATTT
*
112772291 CGTTCTTTTATTATTATT
1 CGTT-TTTTATTACTATT
112772309 ACTTAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.67
Consensus pattern (18 bp):
CGTTTTTTATTACTATTT
Found at i:112773558 original size:17 final size:18
Alignment explanation
Indices: 112773536--112773576 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
112773526 ACCCAAATTG
*
112773536 ATAAAACCC-AACATAAA
1 ATAAAACCCAAAAATAAA
112773553 ATAAAACCCAAAAATAAA
1 ATAAAACCCAAAAATAAA
112773571 ATAAAA
1 ATAAAA
112773577 ATACCCAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.71, C:0.17, G:0.00, T:0.12
Consensus pattern (18 bp):
ATAAAACCCAAAAATAAA
Found at i:112776135 original size:32 final size:34
Alignment explanation
Indices: 112776099--112776161 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
112776089 ATAGTGGTAC
*
112776099 TGGGCCAGAG-CCCTT-TTCAGATTACAATAAAT
1 TGGGCCAGAGCCCCTTATTCAGATAACAATAAAT
**
112776131 TGGGCCTTAGCCCCTTATTCAGATAACAATA
1 TGGGCCAGAGCCCCTTATTCAGATAACAATA
112776162 TGGCCCATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 8 0.31
33 5 0.19
34 13 0.50
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (34 bp):
TGGGCCAGAGCCCCTTATTCAGATAACAATAAAT
Found at i:112776499 original size:26 final size:26
Alignment explanation
Indices: 112776470--112776522 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
112776460 TCAAATATGC
112776470 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
112776496 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
112776522 A
1 A
112776523 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:112777909 original size:6 final size:6
Alignment explanation
Indices: 112777898--112777927 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
112777888 GAAAAGAGAA
112777898 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
112777928 GGGTCTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:112779692 original size:14 final size:14
Alignment explanation
Indices: 112779673--112779702 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
112779663 TATTTGATTG
112779673 TTAGTCCATCATTT
1 TTAGTCCATCATTT
*
112779687 TTAGTCCATTATTT
1 TTAGTCCATCATTT
112779701 TT
1 TT
112779703 GTGTTGTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.17, G:0.07, T:0.57
Consensus pattern (14 bp):
TTAGTCCATCATTT
Found at i:112780430 original size:132 final size:132
Alignment explanation
Indices: 112780044--112780434 Score: 482
Period size: 132 Copynumber: 3.0 Consensus size: 132
112780034 TTTAAAAATT
* * * * * *
112780044 CTTTAAAACG-AAGACGATGTTCGATATTTGGCAACTCGCGAAATTGTGCCCTAACGTGCTGGGT
1 CTTTAAAACGAAAGA-AATGTTCGATGTTTGGCAATTCGGGGAATTGTGCCCTATCGTGCTGGGT
* * * * * ** * * *
112780108 CGCAATTTCTCGTTTGCTCAAGATAATCGAAGGTCTCTTTAGAATTTCATTCATGATTTGTAAAA
65 TGCAATTTCTCGTTTGTTCAAAATGATCGAAGATCTCTTCGGAATTTCACTCATGTTTTCT-AAA
112780173 AACC
129 AACC
* *
112780177 CTTTAAAACGAAAGAAATGTTCGATGTTTGGTAATTC-GAGAATTGTGCCCTATCGTGCTGGGTT
1 CTTTAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGGAATTGTGCCCTATCGTGCTGGGTT
* * * * *
112780241 GCACTTTTTCATTTGTTCAAAACGATCGAAGAT-TCCTTCGGAATTTCACTCACGTTTTCTAAAA
66 GCAATTTCTCGTTTGTTCAAAATGATCGAAGATCT-CTTCGGAATTTCACTCATGTTTTCTAAAA
112780305 ACC
130 ACC
*
112780308 CTTTAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGGAATAGTGCCCTATCGTGCTGGGTT
1 CTTTAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGGAATTGTGCCCTATCGTGCTGGGTT
* * * *
112780373 GCAATCTCCCGTTTGTTCAAAATGATCGAATATCTCTTCGGAATTTCACTCGTGTTTTCTAA
66 GCAATTTCTCGTTTGTTCAAAATGATCGAAGATCTCTTCGGAATTTCACTCATGTTTTCTAA
112780435 GGTGAGGCAA
Statistics
Matches: 219, Mismatches: 35, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
131 44 0.20
132 142 0.65
133 29 0.13
134 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (132 bp):
CTTTAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGGAATTGTGCCCTATCGTGCTGGGTT
GCAATTTCTCGTTTGTTCAAAATGATCGAAGATCTCTTCGGAATTTCACTCATGTTTTCTAAAAA
CC
Found at i:112784098 original size:16 final size:15
Alignment explanation
Indices: 112784077--112784110 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
112784067 ATTTGGTTAT
112784077 TTTTAATTTCTATAAA
1 TTTTAATTTCTA-AAA
*
112784093 TTTTAATTTTTAAAA
1 TTTTAATTTCTAAAA
112784108 TTT
1 TTT
112784111 CAGTCATCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTAATTTCTAAAA
Found at i:112787816 original size:29 final size:31
Alignment explanation
Indices: 112787778--112787846 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
112787768 TATATATAGA
*
112787778 CTAAATAAAATAATAAAAT-AATAA-AA-TAT
1 CTAATTAAAAT-ATAAAATAAATAATAATTAT
* *
112787807 CTTATTAAAATATTAAATAAATAATAATTAT
1 CTAATTAAAATATAAAATAAATAATAATTAT
112787838 CTAATTAAA
1 CTAATTAAA
112787847 TAACTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 2 0.06
31 11 0.33
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (31 bp):
CTAATTAAAATATAAAATAAATAATAATTAT
Found at i:112787823 original size:8 final size:8
Alignment explanation
Indices: 112787781--112787805 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
112787771 ATATAGACTA
112787781 AATAAAAT
1 AATAAAAT
112787789 AATAAAAT
1 AATAAAAT
112787797 AATAAAAT
1 AATAAAAT
112787805 A
1 A
112787806 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:112788125 original size:30 final size:31
Alignment explanation
Indices: 112788066--112788127 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 31
112788056 AAAATATCTG
*
112788066 CACTATTAATCCTTCAAATTTTTTATATTTA
1 CACTATTAATCCTTCAAATTTTTGATATTTA
112788097 CACT-TTAATCCCTT-AAA-TTTTGAGTATTTA
1 CACTATTAAT-CCTTCAAATTTTTGA-TATTTA
112788127 C
1 C
112788128 TCTTGGGCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
29 5 0.18
30 15 0.54
31 8 0.29
ACGTcount: A:0.31, C:0.18, G:0.03, T:0.48
Consensus pattern (31 bp):
CACTATTAATCCTTCAAATTTTTGATATTTA
Found at i:112791027 original size:36 final size:36
Alignment explanation
Indices: 112790944--112791027 Score: 89
Period size: 36 Copynumber: 2.3 Consensus size: 36
112790934 AAGGAAGTAA
* * *
112790944 ACCAGCGCCACCGCCACCACCAGCTCCTGCTCCACC
1 ACCAGCACCACCGCCAACACCAGCTCCTACTCCACC
* * * *
112790980 TCCAACTCCACCGCCAACAGC-GCCTCCTACTCCACC
1 ACCAGCACCACCGCCAACACCAG-CTCCTACTCCACC
112791016 ACCAGCACCACC
1 ACCAGCACCACC
112791028 AAATCCACCG
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
35 1 0.03
36 37 0.97
ACGTcount: A:0.23, C:0.57, G:0.11, T:0.10
Consensus pattern (36 bp):
ACCAGCACCACCGCCAACACCAGCTCCTACTCCACC
Found at i:112791044 original size:27 final size:27
Alignment explanation
Indices: 112791026--112791144 Score: 166
Period size: 27 Copynumber: 4.4 Consensus size: 27
112791016 ACCAGCACCA
* *
112791026 CCAAATCCACCGACTCCACCGGTTCCT
1 CCAAGTCCACCGACTCCACCGGTACCT
112791053 CCAAGTCCACCGACTCCACCGGTACCT
1 CCAAGTCCACCGACTCCACCGGTACCT
* * *
112791080 CCAAGTCCACCGAATCCACCGGTTCGT
1 CCAAGTCCACCGACTCCACCGGTACCT
* * *
112791107 CCAAGTCCACCGAATCCTCCGGTTCCT
1 CCAAGTCCACCGACTCCACCGGTACCT
112791134 CCAAGTCCACC
1 CCAAGTCCACC
112791145 CAAACCACCA
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.22, C:0.46, G:0.14, T:0.18
Consensus pattern (27 bp):
CCAAGTCCACCGACTCCACCGGTACCT
Found at i:112791072 original size:54 final size:54
Alignment explanation
Indices: 112791014--112791119 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 54
112791004 TCCTACTCCA
*
112791014 CCACCAGCACCACCAAATCCACCGACTCCACCGGTTCCTCCAAGTCCACCGACT
1 CCACCAGCACCACCAAATCCACCGAATCCACCGGTTCCTCCAAGTCCACCGACT
* * * * *
112791068 CCACCGGTACCTCCAAGTCCACCGAATCCACCGGTTCGTCCAAGTCCACCGA
1 CCACCAGCACCACCAAATCCACCGAATCCACCGGTTCCTCCAAGTCCACCGA
112791120 ATCCTCCGGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.25, C:0.47, G:0.14, T:0.14
Consensus pattern (54 bp):
CCACCAGCACCACCAAATCCACCGAATCCACCGGTTCCTCCAAGTCCACCGACT
Found at i:112791129 original size:54 final size:54
Alignment explanation
Indices: 112791026--112791153 Score: 184
Period size: 54 Copynumber: 2.4 Consensus size: 54
112791016 ACCAGCACCA
* * *
112791026 CCAAATCCACCGACTCCACCGGTTCCTCCAAGTCCACCGACTCCACCGGTACCT
1 CCAAGTCCACCGAATCCACCGGTTCCTCCAAGTCCACCGAATCCACCGGTACCT
* * *
112791080 CCAAGTCCACCGAATCCACCGGTTCGTCCAAGTCCACCGAATCCTCCGGTTCCT
1 CCAAGTCCACCGAATCCACCGGTTCCTCCAAGTCCACCGAATCCACCGGTACCT
* *
112791134 CCAAGTCCACCCAAACCACC
1 CCAAGTCCACCGAATCCACC
112791154 ACCACCACCA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.23, C:0.47, G:0.13, T:0.16
Consensus pattern (54 bp):
CCAAGTCCACCGAATCCACCGGTTCCTCCAAGTCCACCGAATCCACCGGTACCT
Found at i:112791165 original size:54 final size:54
Alignment explanation
Indices: 112791053--112791171 Score: 139
Period size: 54 Copynumber: 2.2 Consensus size: 54
112791043 ACCGGTTCCT
* * * **** **
112791053 CCAAGTCCACCGACTCCACCGGTACCTCCAAGTCCACCGAATCCACCGGTTCGT
1 CCAAGTCCACCGAATCCACCGGTACCTCCAAGTCCACCCAAACCACCACCACCA
* *
112791107 CCAAGTCCACCGAATCCTCCGGTTCCTCCAAGTCCACCCAAACCACCACCACCA
1 CCAAGTCCACCGAATCCACCGGTACCTCCAAGTCCACCCAAACCACCACCACCA
112791161 CCAAGTCCACC
1 CCAAGTCCACC
112791172 TACGCCACCA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.25, C:0.48, G:0.13, T:0.14
Consensus pattern (54 bp):
CCAAGTCCACCGAATCCACCGGTACCTCCAAGTCCACCCAAACCACCACCACCA
Found at i:112797597 original size:42 final size:42
Alignment explanation
Indices: 112797499--112797590 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
112797489 TATAGATTCT
* **
112797499 CCACAGCTCATGTGAGCGGCATCGTGTAGCTAACATCTCAAC
1 CCACAGCTCATGTGAACAACATCGTGTAGCTAACATCTCAAC
112797541 CCACAGCTCATGTGAACAACATCGTGTAGCTAACATCTCAAC
1 CCACAGCTCATGTGAACAACATCGTGTAGCTAACATCTCAAC
112797583 CCACAGCT
1 CCACAGCT
112797591 TGTGTGAGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (42 bp):
CCACAGCTCATGTGAACAACATCGTGTAGCTAACATCTCAAC
Found at i:112802062 original size:13 final size:13
Alignment explanation
Indices: 112802044--112802068 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
112802034 GTTAAAATCA
112802044 AATTAATTGATTG
1 AATTAATTGATTG
112802057 AATTAATTGATT
1 AATTAATTGATT
112802069 AATCAATCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
AATTAATTGATTG
Found at i:112802273 original size:16 final size:16
Alignment explanation
Indices: 112802232--112802273 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
112802222 ATATTAAACC
*
112802232 AAAAATCCATATAAAT
1 AAAAATCCAAATAAAT
*
112802248 AAAAAACCAAAT-AAT
1 AAAAATCCAAATAAAT
112802263 AAAAAGTCCAA
1 AAAAA-TCCAA
112802274 TTATTAGTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.67, C:0.14, G:0.02, T:0.17
Consensus pattern (16 bp):
AAAAATCCAAATAAAT
Found at i:112804799 original size:127 final size:127
Alignment explanation
Indices: 112804625--112804947 Score: 405
Period size: 127 Copynumber: 2.5 Consensus size: 127
112804615 GAAAATTCCT
* * * * * ** *
112804625 TAAAACCAAGGAAATATTCGATGTTTAGAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTTCG
1 TAAAA-CAAGGCAATGTTCAATATTTGGAAATTCAAGGAATCGTGCCCTATCGTGCTGGGTTTCG
**
112804690 ATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTTACTCATGTTTTCTAAATCC
65 ATTTCCTGTTTGCCCAAAATAATCGAATATTCCTTTAGAATTTTACTCATGTTTTCTAAATCC
* ** *
112804753 TAAAACAAGGCAATTTTTGATATTTGGAAATTCAAGGAA-CTGTGCCCTATAGTGCTGGGTTTCG
1 TAAAACAAGGCAATGTTCAATATTTGGAAATTCAAGGAATC-GTGCCCTATCGTGCTGGGTTTCG
* * * * * *
112804817 ATTTCCTGTTTGCCCAAAATAGTCGAATATTTCTTTGGGATTTTACTCGTGTTTTCTAAATTC
65 ATTTCCTGTTTGCCCAAAATAATCGAATATTCCTTTAGAATTTTACTCATGTTTTCTAAATCC
* * * *
112804880 TAAGATAAGGCAATGTTCAATGTTTGGAAATTCAAGGAATCGTGCCCTACCGTGCTGGGTTTCGA
1 TAAAACAAGGCAATGTTCAATATTTGGAAATTCAAGGAATCGTGCCCTATCGTGCTGGGTTTCGA
112804945 TTT
66 TTT
112804948 TTCGTTGGAC
Statistics
Matches: 168, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
127 162 0.96
128 6 0.04
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (127 bp):
TAAAACAAGGCAATGTTCAATATTTGGAAATTCAAGGAATCGTGCCCTATCGTGCTGGGTTTCGA
TTTCCTGTTTGCCCAAAATAATCGAATATTCCTTTAGAATTTTACTCATGTTTTCTAAATCC
Found at i:112805560 original size:16 final size:17
Alignment explanation
Indices: 112805524--112805567 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
112805514 AACCCAATCC
*
112805524 AAATAATTAATTTTTATT
1 AAATAATTAA-TTTTAAT
112805542 AAATAATTAA-TTTAAT
1 AAATAATTAATTTTAAT
*
112805558 AAAAAATTAA
1 AAATAATTAA
112805568 AATTCCTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.58
18 10 0.42
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
AAATAATTAATTTTAAT
Found at i:112805571 original size:18 final size:17
Alignment explanation
Indices: 112805553--112805586 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
112805543 AATAATTAAT
112805553 TTAATAAAAAATTAAAA
1 TTAATAAAAAATTAAAA
**
112805570 TTCCTAAAAAATTAAAA
1 TTAATAAAAAATTAAAA
112805587 ATAAGTTAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
TTAATAAAAAATTAAAA
Found at i:112821701 original size:88 final size:88
Alignment explanation
Indices: 112821552--112821728 Score: 266
Period size: 88 Copynumber: 2.0 Consensus size: 88
112821542 TAGGTTCAAT
* *
112821552 CTCCCAATTTTATAGTCCTTCATTCATTGATAATACACTTACTGTTTTTCTTTTTTTTGGAATCC
1 CTCCCAATTCTATAGTCCTTCATTCATTAATAATACACTTACTGTTTTTCTTTTTTTTGGAATCC
112821617 TTATGCAGATCACTTGATCTTCA
66 TTATGCAGATCACTTGATCTTCA
* ** * *
112821640 CTCCCAATTCTATAGTCCTTCACTT-GTTAATAATGTACTTACTGTTTTTTTTTTTTTTGGAATT
1 CTCCCAATTCTATAGTCCTTCA-TTCATTAATAATACACTTACTGTTTTTCTTTTTTTTGGAATC
*
112821704 CTTATGCAGATCAGTTGATCTTCA
65 CTTATGCAGATCACTTGATCTTCA
112821728 C
1 C
112821729 AAAAGGCTCA
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
88 78 0.98
89 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.47
Consensus pattern (88 bp):
CTCCCAATTCTATAGTCCTTCATTCATTAATAATACACTTACTGTTTTTCTTTTTTTTGGAATCC
TTATGCAGATCACTTGATCTTCA
Found at i:112824360 original size:22 final size:22
Alignment explanation
Indices: 112824334--112824377 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
112824324 TTTATTATAC
112824334 TTAGCATAAACAGATAACTACT
1 TTAGCATAAACAGATAACTACT
*
112824356 TTAGCATAAACAGCTAACTACT
1 TTAGCATAAACAGATAACTACT
112824378 GTGGCCTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.27
Consensus pattern (22 bp):
TTAGCATAAACAGATAACTACT
Found at i:112829358 original size:21 final size:20
Alignment explanation
Indices: 112829333--112829371 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
112829323 ATATGAGAGT
*
112829333 AAAAAGAGTGAGAAATGGGCC
1 AAAAAGAGAGA-AAATGGGCC
*
112829354 AAAAATAGAGAAAATGGG
1 AAAAAGAGAGAAAATGGG
112829372 TCAACATGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.54, C:0.05, G:0.31, T:0.10
Consensus pattern (20 bp):
AAAAAGAGAGAAAATGGGCC
Found at i:112836482 original size:29 final size:29
Alignment explanation
Indices: 112836439--112836531 Score: 125
Period size: 29 Copynumber: 3.2 Consensus size: 29
112836429 ACGGGCGTGT
*
112836439 GACACGGCAGTGTGAGATCAGTGTTGGGC
1 GACACGGCCGTGTGAGATCAGTGTTGGGC
*
112836468 AACACGGCCGTGTGAGAGT-AGTGTTGGGC
1 GACACGGCCGTGTGAGA-TCAGTGTTGGGC
* * *
112836497 GACAGGGTCGTGTGAGACCAGTGTTGGGC
1 GACACGGCCGTGTGAGATCAGTGTTGGGC
112836526 GACACG
1 GACACG
112836532 ACCATGCCTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
29 54 0.98
30 1 0.02
ACGTcount: A:0.20, C:0.18, G:0.42, T:0.19
Consensus pattern (29 bp):
GACACGGCCGTGTGAGATCAGTGTTGGGC
Found at i:112840165 original size:10 final size:10
Alignment explanation
Indices: 112840148--112840187 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
112840138 GATTTTTTTC
112840148 ATTTATCTTT
1 ATTTATCTTT
*
112840158 AATTATCTTT
1 ATTTATCTTT
112840168 ATTTAT-TTAT
1 ATTTATCTT-T
112840178 ATTTATCTTT
1 ATTTATCTTT
112840188 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:112851683 original size:20 final size:20
Alignment explanation
Indices: 112851658--112851697 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
112851648 TGGCAGTTCA
112851658 ATTAGATTTTAAGTACCAAC
1 ATTAGATTTTAAGTACCAAC
*
112851678 ATTAGATTTTAAGTGCCAAC
1 ATTAGATTTTAAGTACCAAC
112851698 TTGAATTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (20 bp):
ATTAGATTTTAAGTACCAAC
Found at i:112852428 original size:17 final size:17
Alignment explanation
Indices: 112852408--112852441 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
112852398 AGGTTTAGGT
112852408 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
112852425 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
112852442 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:112857819 original size:17 final size:17
Alignment explanation
Indices: 112857799--112857836 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
112857789 GATAGAATTT
112857799 AATTAAAATTTAAAAAA
1 AATTAAAATTTAAAAAA
* *
112857816 AATTGAAATTTAATAAA
1 AATTAAAATTTAAAAAA
112857833 AATT
1 AATT
112857837 TTCAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (17 bp):
AATTAAAATTTAAAAAA
Found at i:112861226 original size:41 final size:42
Alignment explanation
Indices: 112861164--112861276 Score: 149
Period size: 41 Copynumber: 2.7 Consensus size: 42
112861154 CTTCGTTTTC
* * *
112861164 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACAA-A
1 TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCA-AATA
112861206 T-GATGCCATAGTCCAGCTATGGTCTTACACATATTCAAATA
1 TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCAAATA
* * *
112861247 TCGATGCCATAGCCCAGTTTTGGTCTTACA
1 TCGATGCCATAGTCCAGCTATGGTCTTACA
112861277 GGTAATCACA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
40 2 0.03
41 35 0.56
42 26 0.41
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCAAATA
Found at i:112861271 original size:42 final size:41
Alignment explanation
Indices: 112861166--112861326 Score: 135
Period size: 41 Copynumber: 3.7 Consensus size: 41
112861156 TCGTTTTCTC
** * *
112861166 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACAAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACAAAT
*
112861207 GATGCCATAGTCCAGCTATGGTCTTACACATATTCA-AATAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACAA-AT
* * * *
112861248 CGATGCCATAGCCCAGTTTTGGTCTTACAGGTAATCACATATCACATAAC
1 -GATGCCATAGCCCAGCTATGGTCTTAC-----A-CATAT-TCACA-AAT
*
112861298 GATGCCATAGCCCAGCTATGGTCGTACAC
1 GATGCCATAGCCCAGCTATGGTCTTACAC
112861327 GAATCACATA
Statistics
Matches: 98, Mismatches: 11, Indels: 20
0.76 0.09 0.16
Matches are distributed among these distances:
40 2 0.02
41 35 0.36
42 24 0.24
43 1 0.01
44 1 0.01
47 1 0.01
48 4 0.04
49 27 0.28
50 2 0.02
51 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (41 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATATTCACAAAT
Found at i:112861306 original size:49 final size:48
Alignment explanation
Indices: 112861233--112861338 Score: 140
Period size: 49 Copynumber: 2.2 Consensus size: 48
112861223 TATGGTCTTA
* * * * *
112861233 CACATATTCAAATATCGATGCCATAGCCCAGTTTTGGTCTTACAGGTAAT
1 CACATA-TCAAATAACGATGCCATAGCCCAGCTATGGTCGTACACG-AAT
*
112861283 CACATATCACATAACGATGCCATAGCCCAGCTATGGTCGTACACGAAT
1 CACATATCAAATAACGATGCCATAGCCCAGCTATGGTCGTACACGAAT
112861331 CACATATC
1 CACATATC
112861339 TCACTGATGC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
48 11 0.22
49 33 0.66
50 6 0.12
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (48 bp):
CACATATCAAATAACGATGCCATAGCCCAGCTATGGTCGTACACGAAT
Found at i:112861398 original size:47 final size:46
Alignment explanation
Indices: 112861248--112861420 Score: 157
Period size: 47 Copynumber: 3.7 Consensus size: 46
112861238 ATTCAAATAT
* * * * * * *
112861248 CGATGCCATAGCCCAGTTTTGGTCTTACAGGTAATCACATATCACATAA
1 CGATGCCATATCCCAGATATGGTCTTATACG-AAGCACATATCAC--AC
* * * * * *
112861297 CGATGCCATAGCCCAGCTATGGTCGTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
112861343 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
*
112861390 CGATGCCATATCCCAAATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
112861421 GAAATCACTT
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
46 27 0.25
47 40 0.38
48 12 0.11
49 27 0.25
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:112861473 original size:31 final size:31
Alignment explanation
Indices: 112861438--112861586 Score: 244
Period size: 31 Copynumber: 4.8 Consensus size: 31
112861428 CTTGTCACTT
* *
112861438 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
112861469 GTAGCCGGAGCTACCATTTTTCACTGATCAA
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
112861500 GTAACCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
112861531 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
112861562 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
112861587 TGTCATTTGT
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 109 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:112861667 original size:50 final size:51
Alignment explanation
Indices: 112861562--112861690 Score: 215
Period size: 50 Copynumber: 2.5 Consensus size: 51
112861552 CACTGATCAG
* * *
112861562 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
*
112861613 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
112861663 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
112861691 TGCCATGGTC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 48 0.66
51 25 0.34
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:112864900 original size:15 final size:15
Alignment explanation
Indices: 112864882--112864948 Score: 52
Period size: 15 Copynumber: 4.5 Consensus size: 15
112864872 TTATAATTAA
112864882 ATAAATTTTAATATT
1 ATAAATTTTAATATT
*
112864897 AT-AATAATTAATATTAT
1 ATAAAT-TTTAATA-T-T
*
112864914 ATAAATTTTTAA-ATA
1 ATAAA-TTTTAATATT
112864929 ATAAATTTT-ATATT
1 ATAAATTTTAATATT
112864943 -TAAATT
1 ATAAATT
112864949 GGAAACCTAC
Statistics
Matches: 42, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
13 7 0.17
14 9 0.21
15 13 0.31
16 2 0.05
17 4 0.10
18 6 0.14
19 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATAAATTTTAATATT
Found at i:112867065 original size:67 final size:66
Alignment explanation
Indices: 112866974--112867108 Score: 216
Period size: 67 Copynumber: 2.0 Consensus size: 66
112866964 TAACTTATTA
* *
112866974 TTAGAATTTTAACGGTTTTTGATTAAAATAAATTAATTGATAAGTTAGATGATTTTTTTTTATAA
1 TTAGAATTTTAACGGTTTTCGATTAAAATAAATTAATTGATAAGTCAGATGA-TTTTTTTTATAA
112867039 TT
65 TT
* * *
112867041 TTAGTATTTTAACGGTTTTCGATTAAAATAAATTAATTGATGAGTCAGATGATTTTTTTTATAGT
1 TTAGAATTTTAACGGTTTTCGATTAAAATAAATTAATTGATAAGTCAGATGATTTTTTTTATAAT
112867106 T
66 T
112867107 TT
1 TT
112867109 TTTAGAGTTA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
66 15 0.24
67 48 0.76
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.50
Consensus pattern (66 bp):
TTAGAATTTTAACGGTTTTCGATTAAAATAAATTAATTGATAAGTCAGATGATTTTTTTTATAAT
T
Found at i:112867809 original size:2 final size:2
Alignment explanation
Indices: 112867802--112867832 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
112867792 GAAAAATCTA
112867802 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
112867833 AACAATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:112877956 original size:27 final size:27
Alignment explanation
Indices: 112877926--112877979 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
112877916 ACAAATACAG
* *
112877926 GTTGCGCCTATATCAAATGCGCGACTA
1 GTTGAGCCTATATCAAAGGCGCGACTA
* * *
112877953 GTTGAGCCTTTCTCAGAGGCGCGACTA
1 GTTGAGCCTATATCAAAGGCGCGACTA
112877980 ATCATGCCTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (27 bp):
GTTGAGCCTATATCAAAGGCGCGACTA
Found at i:112878127 original size:13 final size:13
Alignment explanation
Indices: 112878106--112878147 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
112878096 ATGCATTATT
112878106 AAAATTAAATTAA
1 AAAATTAAATTAA
*
112878119 AATATTAAA-TAA
1 AAAATTAAATTAA
*
112878131 AAAATAAAATTATA
1 AAAATTAAATTA-A
112878145 AAA
1 AAA
112878148 CAATATGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
12 10 0.42
13 10 0.42
14 4 0.17
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAATTAAATTAA
Found at i:112878882 original size:22 final size:23
Alignment explanation
Indices: 112878850--112878893 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
112878840 ATAAAAATTT
* *
112878850 AAAAAATATTTTATTTAAAAAAC
1 AAAAAATATTTAATATAAAAAAC
112878873 AAAAAA-ATTTAATATAAAAAA
1 AAAAAATATTTAATATAAAAAA
112878894 TTGAATCGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
AAAAAATATTTAATATAAAAAAC
Found at i:112884086 original size:13 final size:13
Alignment explanation
Indices: 112884068--112884094 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
112884058 AATTTATAAT
112884068 AAATAAATATTTA
1 AAATAAATATTTA
112884081 AAATAAATATTTA
1 AAATAAATATTTA
112884094 A
1 A
112884095 TATATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
AAATAAATATTTA
Found at i:112887035 original size:2 final size:2
Alignment explanation
Indices: 112887023--112887054 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
112887013 CTAAATATTT
*
112887023 TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
112887055 CTTCTTCCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
TC
Found at i:112890722 original size:20 final size:22
Alignment explanation
Indices: 112890699--112890738 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
112890689 ATGAAAATAA
112890699 TTTTAGGGGC-TAAA-AAATTG
1 TTTTAGGGGCATAAATAAATTG
112890719 TTTTAGGGGCATAAATAAAT
1 TTTTAGGGGCATAAATAAAT
112890739 AAATAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 4 0.22
22 4 0.22
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.35
Consensus pattern (22 bp):
TTTTAGGGGCATAAATAAATTG
Found at i:112892809 original size:6 final size:6
Alignment explanation
Indices: 112892798--112892850 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
112892788 AATGGCCTAC
* * * *
112892798 ATACAT ATACAT ATACAT ATACGTAT GTACAT AAACAT ATACAC ATGCAT
1 ATACAT ATACAT ATACAT ATAC--AT ATACAT ATACAT ATACAT ATACAT
112892848 ATA
1 ATA
112892851 AAACAGGGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (6 bp):
ATACAT
Found at i:112898898 original size:4 final size:4
Alignment explanation
Indices: 112898889--112898927 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
112898879 AGATGGTTAA
*
112898889 TATG TATG TATG TATG TATG TATG AATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
112898928 ACATGTGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:112907731 original size:36 final size:36
Alignment explanation
Indices: 112907660--112907731 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
112907650 TGGGGATAGG
* *
112907660 TTATTTCGTGGATTTTAGTGGTGGTATAGGGATGAA
1 TTATTTCGTGGATTTTAGTGGTGGTATAAGAATGAA
*
112907696 TTATTTCGTGGATTTTAGTTGTGGTATAAGAATGAA
1 TTATTTCGTGGATTTTAGTGGTGGTATAAGAATGAA
112907732 CTTTGATGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.25, C:0.03, G:0.29, T:0.43
Consensus pattern (36 bp):
TTATTTCGTGGATTTTAGTGGTGGTATAAGAATGAA
Found at i:112915183 original size:11 final size:11
Alignment explanation
Indices: 112915167--112915199 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
112915157 GACTAAGTTG
112915167 AAAATTCAAAA
1 AAAATTCAAAA
112915178 AAAATTC-AAA
1 AAAATTCAAAA
112915188 AAAATTCAAAA
1 AAAATTCAAAA
112915199 A
1 A
112915200 TATTTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (11 bp):
AAAATTCAAAA
Found at i:112915208 original size:10 final size:10
Alignment explanation
Indices: 112915167--112915199 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
112915157 GACTAAGTTG
112915167 AAAATTCAAAA
1 AAAATTC-AAA
112915178 AAAATTCAAA
1 AAAATTCAAA
112915188 AAAATTCAAA
1 AAAATTCAAA
112915198 AA
1 AA
112915200 TATTTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 15 0.68
11 7 0.32
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAATTCAAA
Found at i:112915869 original size:23 final size:23
Alignment explanation
Indices: 112915832--112915889 Score: 91
Period size: 23 Copynumber: 2.5 Consensus size: 23
112915822 AAAACATATC
*
112915832 ATTA-AAACATCATTCAAGTCCCA
1 ATTATAAACAT-ATTCAAGTCCAA
112915855 ATTATAAACATATTCAAGTCCAA
1 ATTATAAACATATTCAAGTCCAA
112915878 ATTATAAACATA
1 ATTATAAACATA
112915890 CCTAATTCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
23 27 0.82
24 6 0.18
ACGTcount: A:0.48, C:0.19, G:0.03, T:0.29
Consensus pattern (23 bp):
ATTATAAACATATTCAAGTCCAA
Found at i:112936515 original size:17 final size:17
Alignment explanation
Indices: 112936493--112936525 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
112936483 ACCACATCAG
*
112936493 CTTTTAACCGTAGAAAA
1 CTTTTAACAGTAGAAAA
112936510 CTTTTAACAGTAGAAA
1 CTTTTAACAGTAGAAA
112936526 TGGATAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (17 bp):
CTTTTAACAGTAGAAAA
Found at i:112942448 original size:28 final size:28
Alignment explanation
Indices: 112942408--112942463 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
112942398 TAAACACATA
112942408 GCTAAAACACTAAATAATATCTTAATAC
1 GCTAAAACACTAAATAATATCTTAATAC
112942436 GCTAAAACACTAAATAATATCTTAATAC
1 GCTAAAACACTAAATAATATCTTAATAC
112942464 CCCTAAGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.18, G:0.04, T:0.29
Consensus pattern (28 bp):
GCTAAAACACTAAATAATATCTTAATAC
Found at i:112948264 original size:28 final size:28
Alignment explanation
Indices: 112948224--112948279 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
112948214 TAAACACATA
112948224 GCTAAAACACTAAATAATATCTTAATAC
1 GCTAAAACACTAAATAATATCTTAATAC
112948252 GCTAAAACACTAAATAATATCTTAATAC
1 GCTAAAACACTAAATAATATCTTAATAC
112948280 CCCTAAGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.18, G:0.04, T:0.29
Consensus pattern (28 bp):
GCTAAAACACTAAATAATATCTTAATAC
Found at i:112970850 original size:39 final size:39
Alignment explanation
Indices: 112970806--112970941 Score: 191
Period size: 39 Copynumber: 3.5 Consensus size: 39
112970796 GCTCTGATGA
* *
112970806 GCTTCAGTTAGCCTCCGGGATTCTGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGATTCCGTTTAGCACTTGTGT
* *
112970845 GCTTCAGTTAGCCTTTGGGTTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGATTCCGTTTAGCACTTGTGT
* * *
112970884 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGATTCCGTTTAGCACTTGTGT
* *
112970923 GCTTCAGCTAGACTTCGGG
1 GCTTCAGTTAGCCTTCGGG
112970942 TTTCAAATCA
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.13, C:0.24, G:0.25, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGATTCCGTTTAGCACTTGTGT
Found at i:112970866 original size:78 final size:78
Alignment explanation
Indices: 112970783--112970946 Score: 204
Period size: 78 Copynumber: 2.1 Consensus size: 78
112970773 AACCCTTTTG
* * * *
112970783 GGGTTTCAGTTCAGCTC-TGATGAGCTTCAGTTAGCCTCCGGGATTCTGTTTAGCACTTGTGTGC
1 GGGTTTCAGTTCAGCACTTG-TGAGCTTCAGTTAGCCTCCAGGATTCCGTTTAGCACTTATGTGC
* * *
112970847 TTCAGTTAGCCTTT
65 TTCAGCTAGACTTC
* * * * *
112970861 GGGTTTCCGTTTAGCACTTGTGTGCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGTGCT
1 GGGTTTCAGTTCAGCACTTGTGAGCTTCAGTTAGCCTCCAGGATTCCGTTTAGCACTTATGTGCT
112970926 TCAGCTAGACTTC
66 TCAGCTAGACTTC
112970939 GGGTTTCA
1 GGGTTTCA
112970947 AATCACGATG
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 70 0.97
79 2 0.03
ACGTcount: A:0.14, C:0.23, G:0.25, T:0.38
Consensus pattern (78 bp):
GGGTTTCAGTTCAGCACTTGTGAGCTTCAGTTAGCCTCCAGGATTCCGTTTAGCACTTATGTGCT
TCAGCTAGACTTC
Found at i:112971640 original size:3 final size:3
Alignment explanation
Indices: 112971634--112971659 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
112971624 TTTTTTTTTA
112971634 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
112971660 AAGTAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:112978238 original size:39 final size:39
Alignment explanation
Indices: 112978195--112978334 Score: 217
Period size: 39 Copynumber: 3.6 Consensus size: 39
112978185 GCTCTGATGA
* *
112978195 GCTTCAGTTAGCCTTCAGGCTTCTGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
112978234 GCTTCAGTTAGCCTTTGGGTTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
112978273 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
112978312 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
112978335 AGATCACGAT
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:112978263 original size:78 final size:78
Alignment explanation
Indices: 112978172--112978318 Score: 215
Period size: 78 Copynumber: 1.9 Consensus size: 78
112978162 AACCCTTTTG
* * *
112978172 GGGTTTCAATTTAGCTC-TGATGAGCTTCAGTTAGCCTTCAGGCTTCTGTTTAGCACTTGTGTGC
1 GGGTTTCAATTTAGCACTTG-TGAGCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGTGC
112978236 TTCAGTTAGCCTTT
65 TTCAGTTAGCCTTT
** * *
112978250 GGGTTTCCGTTTAGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCT
1 GGGTTTCAATTTAGCACTTGTGAGCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGTGCT
112978315 TCAG
66 TCAG
112978319 CTAGACTTCG
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 59 0.97
79 2 0.03
ACGTcount: A:0.14, C:0.22, G:0.24, T:0.40
Consensus pattern (78 bp):
GGGTTTCAATTTAGCACTTGTGAGCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGTGCT
TCAGTTAGCCTTT
Found at i:112988070 original size:28 final size:28
Alignment explanation
Indices: 112988039--112988092 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
112988029 CAATAAGTAC
*
112988039 TGTATGTAGTGGTAATTAATATTATAGT
1 TGTATGTAGTGGTAACTAATATTATAGT
*
112988067 TGTATGTAGTGGTAACTGATATTATA
1 TGTATGTAGTGGTAACTAATATTATA
112988093 CTTTTAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.31, C:0.02, G:0.22, T:0.44
Consensus pattern (28 bp):
TGTATGTAGTGGTAACTAATATTATAGT
Done.