Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 342 of 362
Found at i:113632341 original size:22 final size:24
Alignment explanation
Indices: 113632311--113632355 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
113632301 GTTTTTTTAA
113632311 TATTATTTA-ACAATATTT-TAAAG
1 TATTATTTATA-AATATTTCTAAAG
113632334 TATT-TTTATAAATATTTCTAAA
1 TATTATTTATAAATATTTCTAAA
113632356 AACTAATAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.51
Consensus pattern (24 bp):
TATTATTTATAAATATTTCTAAAG
Found at i:113641365 original size:13 final size:13
Alignment explanation
Indices: 113641347--113641378 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
113641337 ATTAATTTTT
113641347 AAAAAAGTATAAA
1 AAAAAAGTATAAA
*
113641360 AAAAAATTATAAA
1 AAAAAAGTATAAA
113641373 AAAAAA
1 AAAAAA
113641379 AAGAGTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (13 bp):
AAAAAAGTATAAA
Found at i:113642210 original size:21 final size:19
Alignment explanation
Indices: 113642131--113642212 Score: 69
Period size: 19 Copynumber: 4.1 Consensus size: 19
113642121 AATAGCAAAA
113642131 ATTTTCTATAA-ATTTTTAAT
1 ATTTT-TATAATA-TTTTAAT
* * *
113642151 ACTTTTATAACAATTTAAT
1 ATTTTTATAATATTTTAAT
113642170 ATTTTTATAATATTTATAAT
1 ATTTTTATAATATTT-TAAT
113642190 ATTCATTT-TAATACTTTTAAT
1 ATT--TTTATAATA-TTTTAAT
113642211 AT
1 AT
113642213 AAATACCTAA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
19 23 0.44
20 12 0.23
21 11 0.21
22 6 0.12
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTTTATAATATTTTAAT
Found at i:113642329 original size:30 final size:29
Alignment explanation
Indices: 113642288--113642354 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 29
113642278 ATTCTTTCTT
* **
113642288 ATTTTTCATAATATATTAATGGTTTTTATA
1 ATTTTTAATAATATATTAAT-CATTTTATA
*
113642318 ATTTTTAATAATATTTTAATCATTTTATA
1 ATTTTTAATAATATATTAATCATTTTATA
*
113642347 ATTATTAA
1 ATTTTTAA
113642355 AAATTTTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 14 0.44
30 18 0.56
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (29 bp):
ATTTTTAATAATATATTAATCATTTTATA
Found at i:113642344 original size:29 final size:28
Alignment explanation
Indices: 113642288--113642371 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 28
113642278 ATTCTTTCTT
* * *
113642288 ATTTTTCATAATATATTAATGGTTTTTATA
1 ATTTTTAATAATATTTTAAT--ATTTTATA
113642318 ATTTTTAATAATATTTTAATCATTTTATA
1 ATTTTTAATAATATTTTAAT-ATTTTATA
* *
113642347 ATTATTAAAAAT-TTTATAATATTTT
1 ATTTTTAATAATATTT-TAATATTTT
113642372 TCTACAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 8 0.17
29 21 0.45
30 18 0.38
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (28 bp):
ATTTTTAATAATATTTTAATATTTTATA
Found at i:113642402 original size:19 final size:19
Alignment explanation
Indices: 113642355--113642403 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
113642345 TAATTATTAA
* *
113642355 AAATTTTATAATATTTTTCT
1 AAATTTT-TTATAGTTTTCT
113642375 ACAA-TTTTTATAGTTTTCT
1 A-AATTTTTTATAGTTTTCT
113642394 AAATTTTTTA
1 AAATTTTTTA
113642404 ATCATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 2 0.08
19 17 0.68
20 4 0.16
21 2 0.08
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (19 bp):
AAATTTTTTATAGTTTTCT
Found at i:113643439 original size:18 final size:17
Alignment explanation
Indices: 113643417--113643462 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
113643407 CACTATTAAA
113643417 ATATTAAAATATTAATTT
1 ATATTAAAATATT-ATTT
* *
113643435 TTATTATAATATTATTT
1 ATATTAAAATATTATTT
*
113643452 ATATTGAAATA
1 ATATTAAAATA
113643463 ATTGTTATTG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
ATATTAAAATATTATTT
Found at i:113643701 original size:35 final size:35
Alignment explanation
Indices: 113643652--113643723 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
113643642 TAAGTGGCTG
*
113643652 ATAGATTTTGTTACTTGCCATATTTGAAATTGACA
1 ATAGATTTTATTACTTGCCATATTTGAAATTGACA
113643687 ATAGATTTTATTACTTGCCATATTTGAAATTGACA
1 ATAGATTTTATTACTTGCCATATTTGAAATTGACA
113643722 AT
1 AT
113643724 TTTTGAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.43
Consensus pattern (35 bp):
ATAGATTTTATTACTTGCCATATTTGAAATTGACA
Found at i:113645936 original size:86 final size:87
Alignment explanation
Indices: 113645786--113645953 Score: 286
Period size: 86 Copynumber: 1.9 Consensus size: 87
113645776 GTATGTTGGG
* * *
113645786 TATACGACTTTTGTAGTATGTAGCATCATTCACAATAGTGTAATTCATAGCTAAACTAATGGGTA
1 TATACGACTTCTGTAATATGTAGCATCATTCACAATAGTGAAATTCATAGCTAAACTAATGGGTA
113645851 AATGAT-ATCTTCTCATTGATAT
66 AATGATAAT-TTCTCATTGATAT
113645873 TATA-GACTTCTGTAATATGTAGCATCATTCACAATAGTGAAATTCATAGCTAAACTAATGGGTA
1 TATACGACTTCTGTAATATGTAGCATCATTCACAATAGTGAAATTCATAGCTAAACTAATGGGTA
113645937 AATGATAATTTCTCATT
66 AATGATAATTTCTCATT
113645954 AACATTACAT
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
86 71 0.92
87 6 0.08
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (87 bp):
TATACGACTTCTGTAATATGTAGCATCATTCACAATAGTGAAATTCATAGCTAAACTAATGGGTA
AATGATAATTTCTCATTGATAT
Found at i:113648979 original size:24 final size:24
Alignment explanation
Indices: 113648952--113649012 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
113648942 AATTAATTTT
* *
113648952 TATATAATTTTTTAAATTTTTATA
1 TATATAATTTTTTAAAATTTCATA
*
113648976 TATATATTTTTTTAAAATTTCATA
1 TATATAATTTTTTAAAATTTCATA
*
113649000 AATTATAATTTTT
1 TA-TATAATTTTT
113649013 ATTTACAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
24 22 0.71
25 9 0.29
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TATATAATTTTTTAAAATTTCATA
Found at i:113653462 original size:20 final size:21
Alignment explanation
Indices: 113653437--113653484 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
113653427 ATAAAAATCT
*
113653437 TAATTAATAAATATCT-TTTA
1 TAATTAATAAATATCTATTAA
113653457 TAATTAATAAATATCTATTAA
1 TAATTAATAAATATCTATTAA
113653478 TAATTAA
1 TAATTAA
113653485 ATACATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (21 bp):
TAATTAATAAATATCTATTAA
Found at i:113654075 original size:19 final size:21
Alignment explanation
Indices: 113654029--113654075 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
113654019 TATAATAACT
*
113654029 TAATTTAATATCATATATTAC
1 TAATTAAATATCATATATTAC
113654050 TAA-TAAATAT-ATATATTA-
1 TAATTAAATATCATATATTAC
113654068 TAATTAAA
1 TAATTAAA
113654076 ATCTAAGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.12
19 12 0.50
20 6 0.25
21 3 0.12
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (21 bp):
TAATTAAATATCATATATTAC
Found at i:113654567 original size:17 final size:17
Alignment explanation
Indices: 113654545--113654599 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
113654535 GAGTAAGCAT
113654545 TTCAAATGCTTAGTAAG
1 TTCAAATGCTTAGTAAG
113654562 TTCAAAACTGC--A-TAAG
1 TTC-AAA-TGCTTAGTAAG
113654578 ATTTCAAATGCTTAGTAAG
1 --TTCAAATGCTTAGTAAG
113654597 TTC
1 TTC
113654600 GTATAACAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
16 7 0.23
17 10 0.32
18 7 0.23
19 7 0.23
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (17 bp):
TTCAAATGCTTAGTAAG
Found at i:113654584 original size:35 final size:36
Alignment explanation
Indices: 113654529--113654599 Score: 119
Period size: 35 Copynumber: 2.0 Consensus size: 36
113654519 CAGAGAAAAG
113654529 AAAACTGAGTAAGCATTTCAAATGCTTAGTAAGTTC
1 AAAACTGAGTAAGCATTTCAAATGCTTAGTAAGTTC
113654565 AAAACTGCA-TAAG-ATTTCAAATGCTTAGTAAGTTC
1 AAAACTG-AGTAAGCATTTCAAATGCTTAGTAAGTTC
113654600 GTATAACAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
35 22 0.65
36 11 0.32
37 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (36 bp):
AAAACTGAGTAAGCATTTCAAATGCTTAGTAAGTTC
Found at i:113655093 original size:24 final size:25
Alignment explanation
Indices: 113655061--113655107 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
113655051 CTTATAGGAG
*
113655061 CCATAATCGGGAAGTTCACAAAGAA
1 CCATAATCGGGAAGCTCACAAAGAA
113655086 CCAT-ATCGGGAAGCTCACAAAG
1 CCATAATCGGGAAGCTCACAAAG
113655108 CGTCATGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.15
Consensus pattern (25 bp):
CCATAATCGGGAAGCTCACAAAGAA
Found at i:113657144 original size:15 final size:15
Alignment explanation
Indices: 113657124--113657177 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
113657114 ATACTACAAA
113657124 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
113657139 ATATTTATAATTATAAT
1 ATATTTATTA-T-TAAT
*
113657156 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
113657173 ATATT
1 ATATT
113657178 AATATTGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:113657163 original size:19 final size:19
Alignment explanation
Indices: 113657139--113657175 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
113657129 TATTATTAAT
*
113657139 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
113657158 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
113657176 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:113657235 original size:15 final size:16
Alignment explanation
Indices: 113657215--113657244 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
113657205 ATAATATTAT
113657215 TTAAAA-TTATTATTC
1 TTAAAATTTATTATTC
113657230 TTAAAATTTATTATT
1 TTAAAATTTATTATT
113657245 AAAATAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (16 bp):
TTAAAATTTATTATTC
Found at i:113672794 original size:29 final size:29
Alignment explanation
Indices: 113672745--113672818 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
113672735 ATATACATGT
* *
113672745 AATAATTTTAATAATTTTATATTTTAAAAA
1 AATAATTATAATAATTATATATTTT-AAAA
113672775 AATAA-TATAATAATTATATATTTTAAAA
1 AATAATTATAATAATTATATATTTTAAAA
*
113672803 AATAATTTTAATAATT
1 AATAATTATAATAATT
113672819 TTAAAATCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
28 9 0.22
29 26 0.65
30 5 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
AATAATTATAATAATTATATATTTTAAAA
Found at i:113672808 original size:20 final size:22
Alignment explanation
Indices: 113672783--113672824 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
113672773 AAAATAATAT
113672783 AATAATTAT-AT-ATTTTAAAA
1 AATAATTATAATAATTTTAAAA
*
113672803 AATAATTTTAATAATTTTAAAA
1 AATAATTATAATAATTTTAAAA
113672825 TCATTTGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 2 0.11
22 9 0.47
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AATAATTATAATAATTTTAAAA
Found at i:113673318 original size:8 final size:8
Alignment explanation
Indices: 113673290--113673323 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
113673280 AATTAAAACT
113673290 TAAAATAA
1 TAAAATAA
*
113673298 TACAATCAA
1 TAAAAT-AA
113673307 TAAAATAA
1 TAAAATAA
113673315 TAAAATAA
1 TAAAATAA
113673323 T
1 T
113673324 TGTTTTGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (8 bp):
TAAAATAA
Found at i:113676348 original size:20 final size:20
Alignment explanation
Indices: 113676325--113676364 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
113676315 TTTATTATTA
*
113676325 TTATTATTA-TTTCATTTGTT
1 TTATT-TTACTTTCAATTGTT
113676345 TTATTTTACTTTCAATTGTT
1 TTATTTTACTTTCAATTGTT
113676365 AACTAAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (20 bp):
TTATTTTACTTTCAATTGTT
Found at i:113676552 original size:26 final size:25
Alignment explanation
Indices: 113676518--113676566 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
113676508 ATATTATTAT
113676518 TATTATTATTATT-TTGTTTTATTTAA
1 TATTATTATT-TTCTT-TTTTATTTAA
*
113676544 TATTTTTATTTTCTTTTTTATTT
1 TATTATTATTTTCTTTTTTATTT
113676567 TACAATTAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (25 bp):
TATTATTATTTTCTTTTTTATTTAA
Found at i:113678361 original size:66 final size:67
Alignment explanation
Indices: 113678280--113678413 Score: 191
Period size: 66 Copynumber: 2.0 Consensus size: 67
113678270 AGTCCTTTTC
*
113678280 AGAGAGCACACTCTCGCAAACC-CTATTTCTTACAGCAGAATTAGCAGTCC-AGCTAAATCCCCT
1 AGAGAGCACACTCTCGCAAACCTC-ATTTCTTACAGCAGAATTAGCAGTCCAAGCTAAATCCCAT
113678343 GTA
65 GTA
* * * **
113678346 AGAGAGCACACTCTCGCGAACCTCATTTCTTACAGCGGGATTATTAGTCCAAGCTAAATCCCATG
1 AGAGAGCACACTCTCGCAAACCTCATTTCTTACAGCAGAATTAGCAGTCCAAGCTAAATCCCATG
113678411 TA
66 TA
113678413 A
1 A
113678414 TGACAAATAC
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
66 43 0.72
67 17 0.28
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (67 bp):
AGAGAGCACACTCTCGCAAACCTCATTTCTTACAGCAGAATTAGCAGTCCAAGCTAAATCCCATG
TA
Found at i:113678577 original size:58 final size:58
Alignment explanation
Indices: 113678482--113678626 Score: 164
Period size: 58 Copynumber: 2.5 Consensus size: 58
113678472 CATTTACTTT
* * * ** * * * * *
113678482 GGATTACCCGTCCGGGATAAATCCATTTCGCACATATTTTTTGGGAGGGCTTATATTA
1 GGATCACCCGTCCGGGCTAGATCTTTTTCACACATATTCTTTAGGAAGGCTTATATCA
113678540 GGATCACCCGTCCGGGCTAGATCTTTTTCACACATATTCTTTAGGAAGGCTTATATCA
1 GGATCACCCGTCCGGGCTAGATCTTTTTCACACATATTCTTTAGGAAGGCTTATATCA
* * *
113678598 GGATCACTCGTTCGAGCTAGATCCTTTTT
1 GGATCACCCGTCCGGGCTAGAT-CTTTTT
113678627 ACTGTCAAAT
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
58 67 0.92
59 6 0.08
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (58 bp):
GGATCACCCGTCCGGGCTAGATCTTTTTCACACATATTCTTTAGGAAGGCTTATATCA
Found at i:113681107 original size:20 final size:20
Alignment explanation
Indices: 113681070--113681125 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
113681060 ACAAAAAAAA
* *
113681070 TCAAAATATTTTTCAAAAGTT
1 TCAAAATATTTAT-AAAAATT
113681091 T-AAAATATTTATAAAAATT
1 TCAAAATATTTATAAAAATT
113681110 TCAAAAT-TTTA-AAAAA
1 TCAAAATATTTATAAAAA
113681126 AAATTTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 5 0.16
19 11 0.34
20 15 0.47
21 1 0.03
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (20 bp):
TCAAAATATTTATAAAAATT
Found at i:113681129 original size:21 final size:21
Alignment explanation
Indices: 113681103--113681143 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
113681093 AAATATTTAT
* *
113681103 AAAAATTTCAAAATTTTAAAA
1 AAAAATTTAAAAATTCTAAAA
113681124 AAAAATTTAAAAATTCTAAA
1 AAAAATTTAAAAATTCTAAA
113681144 GAATATATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAAATTTAAAAATTCTAAAA
Found at i:113690035 original size:34 final size:34
Alignment explanation
Indices: 113689992--113690060 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
113689982 CAAGTTTTAG
113689992 ATTTAATTTGTGGATGAAAGGTGAGAACAAAAGA
1 ATTTAATTTGTGGATGAAAGGTGAGAACAAAAGA
*
113690026 ATTTAATTTGTGGATGAAAGGTGAGAACAAGAGA
1 ATTTAATTTGTGGATGAAAGGTGAGAACAAAAGA
113690060 A
1 A
113690061 ATTAGTGAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.43, C:0.03, G:0.28, T:0.26
Consensus pattern (34 bp):
ATTTAATTTGTGGATGAAAGGTGAGAACAAAAGA
Found at i:113694128 original size:38 final size:38
Alignment explanation
Indices: 113694058--113694143 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 38
113694048 AAATATAACC
* *
113694058 AAAAATAAATAAAATTTAAAAATACTTAAATCA-ATAATT
1 AAAAATAAA-AAAATTGAAAAATACATAAATCACA-AATT
*
113694097 AAAAATAAAAAAATTGATAAAATTCAT-AATCACAAATT
1 AAAAATAAAAAAATTGA-AAAATACATAAATCACAAATT
113694135 AAAAA-AAAA
1 AAAAATAAAA
113694144 CTAAAATCAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
37 4 0.10
38 21 0.50
39 17 0.40
ACGTcount: A:0.67, C:0.06, G:0.01, T:0.26
Consensus pattern (38 bp):
AAAAATAAAAAAATTGAAAAATACATAAATCACAAATT
Found at i:113696945 original size:18 final size:18
Alignment explanation
Indices: 113696924--113696958 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
113696914 TATATAGCTA
*
113696924 AATATATATAATAATAAC
1 AATATATAAAATAATAAC
113696942 AATATATAAAATAATAA
1 AATATATAAAATAATAA
113696959 TGATAACAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
AATATATAAAATAATAAC
Found at i:113698577 original size:164 final size:162
Alignment explanation
Indices: 113698243--113699387 Score: 733
Period size: 164 Copynumber: 7.2 Consensus size: 162
113698233 GCGTGAGCCA
* **
113698243 AGGCTCAACTCACCTCTCGCAATATGAGTCGA--TTTTTTGAAAGGTAAAATTGAAAACAGAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAATAAAATTGAAAACAGAATT
* * * ** * *
113698306 AAAATACCTCGGCATGTGACCTGAGGCTCAACTCGTCTCTCGCAATACGAGTTGATTTTTTTTAT
66 AAAATAACTC-GAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
*
113698371 AACAGAAAATTGAAATTACCTCAGCATGTCCTG
130 AACAGAAAATTGAAAATACCTCAGCATGTCCTG
* *
113698404 AGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAAAATATAAATTTAAAAGCAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAATA-AAATTGAAAA-CAG-A
* * * *
113698469 ATTGAAATTAACTC-AACGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA-TTTTT
63 ATT-AAAATAACTCGAACGTGACC-TGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTT
*
113698531 TGAAAGACA-AAAATTGAAAATACCTCAGCATGTCTTG
126 TGAAA-ACAGAAAATTGAAAATACCTCAGCATGTCCTG
** * * *
113698568 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTACAACA-GAAATTG-----A-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA-AAAATAAAATTGAAAACAGAAT
* * * *
113698625 T----TACCTC-AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGA
65 TAAAATAACTCGAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTG-ATTTTTTTG-
* * * *
113698685 AAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTG
128 -------AA---AACAG-A-AAATTGAAAATACCTCAGCATGTCC-TG
* *
113698732 AGGCTCAACTCACCTCTTGCAATATGAGTTGA--TTTTTTG-------AAA--GACAA-A-AATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAATAAAATTGAAAACAGAATT
* * * * * * * *
113698784 GAAAATACCTC-AGCATGTCTTGAGGCTCAACTCA---CTAGCAATATGAGTTGATTTTTTTGAC
66 -AAAATAACTCGAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
* *
113698845 AACAG-AAATTGAAATTACCTCAGCGTGTCCTG
130 AACAGAAAATTGAAAATACCTCAGCATGTCCTG
* *
113698877 AAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAATA-AAATTGAAAA-CAG-A
* * * *
113698942 ATTGAAATTACCTC-AACGTG-CCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA--TTTT
63 ATT-AAAATAACTCGAACGTGACC-TGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTT
* *
113699003 TGACAAACAG-AAATTGAAATTACCTCAGCGTGTCCTG
126 TGA-AAACAGAAAATTGAAAATACCTCAGCATGTCCTG
** * * *
113699040 AGGCTCAACTCATTTCTCGTAATATGAGTTGA---TTTTTGAAAAAT-AGATTGAAACACAAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAATAAAATTGAAA-ACAGAAT
* * *
113699101 TGACAAT-ACATC-AGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
65 T-AAAATAAC-TCGAACGTGACCT-GAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTT
*
113699161 GAAAAACA-AAAATTGAAAATACCTCAGCATGTCTTG
127 G-AAAACAGAAAATTGAAAATACCTCAGCATGTCCTG
* * *
113699197 AGGCTCAACTCA---CTAGCAATATGAGTTGA-TTTTTTTGACAACA-GAAATTG-----A-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA-AAAATAAAATTGAAAACAGAAT
* * * * *
113699250 T----TACCTC-AGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTTA
65 TAAAATAACTCGAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTG-A---TTTTT-
* *
113699310 AATTGAAAAGCAG-AAATTGAAAATTACCTCAACGTG-CCTTG
125 --TTGAAAA-CAGAAAATTGAAAA-TACCTCAGCATGTCC-TG
*
113699351 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
113699388 GACAAACAGA
Statistics
Matches: 820, Mismatches: 77, Indels: 177
0.76 0.07 0.16
Matches are distributed among these distances:
144 40 0.05
145 58 0.07
146 2 0.00
147 7 0.01
148 4 0.00
149 42 0.05
150 8 0.01
151 9 0.01
152 4 0.00
153 17 0.02
154 40 0.05
155 8 0.01
156 9 0.01
157 128 0.16
158 16 0.02
159 13 0.02
160 28 0.03
161 64 0.08
162 14 0.02
163 106 0.13
164 149 0.18
165 42 0.05
166 4 0.00
167 8 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (162 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAATAAAATTGAAAACAGAATT
AAAATAACTCGAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAAA
ACAGAAAATTGAAAATACCTCAGCATGTCCTG
Found at i:113698588 original size:74 final size:74
Alignment explanation
Indices: 113698467--113698700 Score: 290
Period size: 75 Copynumber: 3.1 Consensus size: 74
113698457 TTAAAAGCAG
* * * * * *
113698467 AAATTGAAATTAACTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
113698531 TGAAAGACAA
66 TGAAA-ACAA
* **
113698541 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* * *
113698606 TTTACAACAG
65 TTGAAAACAA
* *
113698616 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTT
* *
113698681 TTGAAAATAT
65 TTGAAAACAA
113698691 AAATTGAAAA
1 AAATTGAAAA
113698701 GCAGAAATTG
Statistics
Matches: 135, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
74 50 0.37
75 76 0.56
76 9 0.07
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAACAA
Found at i:113698787 original size:74 final size:74
Alignment explanation
Indices: 113698694--113698934 Score: 296
Period size: 74 Copynumber: 3.3 Consensus size: 74
113698684 AAAATATAAA
* * *
113698694 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAA-CAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTAGCAATATGA
113698759 GTTGA-TTTT
65 GTTGATTTTT
* * *
113698768 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCA---CTAGCAATATGA
1 TTGAAA-ACAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTAGCAATATGA
113698830 GTTGATTTTT
65 GTTGATTTTT
* * * *
113698840 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCC-TGAAGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAAAAATTGAAATTACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTAGCAATATGA
113698904 GTTGAATTTTT
65 GTTG-ATTTTT
113698915 TTGAAAA-ATATAAATTGAAA
1 TTGAAAACA-A-AAATTGAAA
113698935 AGCAGAAATT
Statistics
Matches: 143, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
71 52 0.36
72 10 0.07
74 59 0.41
75 13 0.09
76 9 0.06
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (74 bp):
TTGAAAACAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTAGCAATATGAG
TTGATTTTT
Found at i:113698864 original size:71 final size:73
Alignment explanation
Indices: 113698698--113698934 Score: 284
Period size: 71 Copynumber: 3.2 Consensus size: 73
113698688 TATAAATTGA
* * *
113698698 AAAG-CAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA-C-CTAGCAATATGAGTT
113698762 GA-TTTTTTG
64 GATTTTTTTG
* * *
113698771 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCA-CTAGCAATATGAGTTGA
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTAGCAATATGAGTTGA
113698835 TTTTTTTG
66 TTTTTTTG
* * * *
113698843 ACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA-C-CTAGCAATATGAGTT
113698907 GAATTTTTTTG
64 G-ATTTTTTTG
* * *
113698918 AAAAATATAAATTGAAA
1 AAAGACAGAAATTGAAA
113698935 AGCAGAAATT
Statistics
Matches: 141, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
71 54 0.38
72 9 0.06
73 4 0.03
74 52 0.37
75 11 0.08
76 11 0.08
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (73 bp):
AAAGACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTAGCAATATGAGTTGA
TTTTTTTG
Found at i:113699154 original size:84 final size:84
Alignment explanation
Indices: 113699013--113699166 Score: 240
Period size: 84 Copynumber: 1.8 Consensus size: 84
113699003 TGACAAACAG
* ** *
113699013 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTG
1 AAATTGAAATTACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
113699078 AAAAATAGATTGAAACACA
66 AAAAATAGATTGAAACACA
113699097 AAATTGACAA-TACATCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGA-AATTACATCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
113699160 TGAAAAA
64 TGAAAAA
113699167 CAAAAATTGA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
83 3 0.05
84 59 0.92
85 2 0.03
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (84 bp):
AAATTGAAATTACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAATAGATTGAAACACA
Found at i:113699205 original size:73 final size:73
Alignment explanation
Indices: 113698929--113699466 Score: 333
Period size: 73 Copynumber: 7.1 Consensus size: 73
113698919 AAAATATAAA
* * * * *
113698929 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
113698994 GTTGATTT
66 GTTGATTT
* * * ** *
113699002 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
113699067 GTTGATTT
66 GTTGATTT
* *** * * * * * * * *
113699075 TTGAAAAATAGATTGAAACACAAAATTGACAATACATC-AG-C--GTGCCTCGAGGCTCAACTCA
1 TTG-AAAA-ACA--GAAATTGAAAA-T-AC-CT-CAGCGTGTCTTGAGGCTC-A-ACTCACCTCT
* *
113699136 C-C--TCTCGCAATATGAGTTGATT
56 CGCAATAT-G-AGT-TGA--T--TT
** * * *
113699158 TTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCA---CTAGCAATATG
1 TTGAAAAA-CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
113699220 AGTTGATTTTT
65 AGTTGA--TTT
* * * *
113699231 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
113699295 GTTGAATTTTTTTT
66 GTTG-A-----TTT
* * * *
113699309 AAATTGAAAAGCAGAAATTGAAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAAT
1 ---TTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
113699374 ATGAGTTGATTT
62 ATGAGTTGATTT
* * * ** *
113699386 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
113699451 GTTGATTT
66 GTTGATTT
113699459 TTGAAAAA
1 TTGAAAAA
113699467 TAGATTGAAA
Statistics
Matches: 356, Mismatches: 72, Indels: 74
0.71 0.14 0.15
Matches are distributed among these distances:
71 37 0.10
72 3 0.01
73 123 0.35
74 36 0.10
75 9 0.03
76 8 0.02
77 19 0.05
78 18 0.05
79 15 0.04
80 14 0.04
81 8 0.02
82 19 0.05
83 47 0.13
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:113699227 original size:391 final size:390
Alignment explanation
Indices: 113698541--113699723 Score: 1742
Period size: 384 Copynumber: 3.0 Consensus size: 390
113698531 TGAAAGACAA
* * * * ** *
113698541 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA---TTT
* ** *
113698606 TTTAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
63 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGA
* * * *
113698670 GTTGAATTTTTTTGAAAATATAAATTGAAA-AGCAGAAATTGA-AATTACCTCAACGTGCCTTGA
128 GTTG-A--TTTTTGAAAA-ATAGATTGAAACA-CA-AAATTGACAA-TACATCAGCGTGCCTCGA
* *
113698733 GGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
186 GGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAAAAATTGAAAATACCTCAGC
113698798 ATGTCTTGAGGCTCAACTCACTAGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTAC
250 ATGTCTTGAGGCTCAACTCACTAGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTAC
113698863 CTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAA
315 CTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG-AAAATATAA
113698928 ATTGAAAAGCAG
379 ATTGAAAAGCAG
113698940 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTG
1 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTG
113699005 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTT
66 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTT
113699070 GATTTTTGAAAAATAGATTGAAACACAAAATTGACAATACATCAGCGTGCCTCGAGGCTCAACTC
131 GATTTTTGAAAAATAGATTGAAACACAAAATTGACAATACATCAGCGTGCCTCGAGGCTCAACTC
113699135 ACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGG
196 ACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGG
113699200 CTCAACTCACTAGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTC
261 CTCAACTCACTAGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTC
113699265 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAA-TTTTTT-----T-TAAATTGAAAAGCAG
326 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAATATAAATTGAAAAGCAG
113699323 AAATTGAAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 AAATTG-AAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
113699388 GACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGT
65 GACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGT
113699453 TGATTTTTGAAAAATAGATTGAAACACAAAAATTGACAATACATCAGCGTGCCTCGAGGCTCAAC
130 TGATTTTTGAAAAATAGATTGAAACAC-AAAATTGACAATACATCAGCGTGCCTCGAGGCTCAAC
* * * *
113699518 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATATCTCAGCGTGTCCTGA
194 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGA
* ** *
113699583 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAA
259 GGCTCAACTCA---CTAGCAATATGAGTTGATTTTT--------TTGA--CAACAGAAATTGAAA
* * * **
113699648 CTACCTCAACGTGTCTTG-AGACTCAACTCATTTCTCGCAATATGAGTTG-ATTTTTTTGAAAAG
311 TTACCTCAGCGTGTCCTGAAG-CTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAA-
*
113699711 TAGAAATTGAAAA
374 TATAAATTGAAAA
113699724 TACCTCAATG
Statistics
Matches: 726, Mismatches: 31, Indels: 48
0.90 0.04 0.06
Matches are distributed among these distances:
383 21 0.03
384 151 0.21
385 109 0.15
388 21 0.03
390 6 0.01
391 144 0.20
392 52 0.07
393 14 0.02
394 11 0.02
396 10 0.01
397 63 0.09
398 61 0.08
399 52 0.07
404 1 0.00
405 10 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (390 bp):
AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTG
ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTT
GATTTTTGAAAAATAGATTGAAACACAAAATTGACAATACATCAGCGTGCCTCGAGGCTCAACTC
ACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGG
CTCAACTCACTAGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTC
CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAATATAAATTGAAAAGCAG
Found at i:113699326 original size:473 final size:460
Alignment explanation
Indices: 113698292--113699779 Score: 1516
Period size: 473 Copynumber: 3.2 Consensus size: 460
113698282 AAAGGTAAAA
* * ** *
113698292 TTGAAAACAG-AATT-AAAATACCTCGGCATGTGACCTGAGGCTCAACTCGTCTCTCGCAATACG
1 TTGAAAACAGAAATTGAAAATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
113698355 AGTTGATTTTTTTTA-T-AACAG-A-AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCA
64 AGTTGATTTTTTTTATTGAAAAGCAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
*
113698416 CCTCTCGCAATATGAGTT-AATTTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAA
129 CCTCTCGCAATATGAGTTGAA-TTTTTTTGAAAAATATAAA-TTAAAAGCAGAAATTGAAATTAC
* * *
113698480 CTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAAT
192 CTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACACAAAAAT
* * *
113698545 TGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT-T-TT
257 TG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGTAAT
113698608 TACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
321 TA-AACAGAAATTGAAA-TA-CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
113698673 GAATTTTTTTGAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTC
383 G-A--TTTTTG---------A---AAAA-CAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTC
*
113698738 AACTCACCTCTTGCAATATGAGTTGA-TTTT
432 AACTCA--TCTAGCAATATGAGTTGATTTTT
* * * *
113698768 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCA---CTAGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
113698830 GTTGA---TTTTT-TTGACAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCAC
65 GTTGATTTTTTTTATTGAAAAGCAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
113698890 CTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCT
130 CTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATT-AAAAGCAGAAATTGAAATTACCT
* *
113698955 CAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTGACAA-ACAGAAATT
194 CAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AACACAAAAATT
*
113699018 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTGAAAAA
258 GAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG-----
*
113699083 TAGATTGAAACACAAAATTGACAATACATCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAAT
317 TA-ATT-AAACA-GAAATTGA-AATAC-TCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAAT
* *
113699147 ATGAGTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCA-CT
376 ATGAGTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCT
113699211 AGCAATATGAGTTGATTTTT
441 AGCAATATGAGTTGATTTTT
* * *
113699231 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
113699296 TTGAATTTTTTTTAAATTGAAAAGCAGAAATTGAAAATTACCTCAACGTG-CCTTGAGGCTCAAC
66 TTG-ATTTTTTTT--ATTGAAAAGCAGAAATTG-AAATTACCTCAGCGTGTCC-TGAGGCTCAAC
* *
113699360 TCACCTCTTGCAATATGAGTTG-A--TTTTTG----------A--CAAA-CAGAAATTGAAATTA
126 TCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTAAAAGCAGAAATTGAAATTA
* ** *
113699409 CCTCAGCGTGTCC-TGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTGAAAAATAGATT
191 CCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT------T---TT
* **
113699473 GAAACACAAAAATTGACAATACATCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAG
244 GAAACACAAAAATTGA-AATACCTCAGCGTGTCCT-GAGGCTCAACTCATTTCTCGCAATATGAG
113699537 TTGATTTTTG-AA--AAACAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
307 TTGATTTTTGTAATTAAACAGAAATTG-AAATA-CTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
113699599 CGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCT
370 CGCAATATGAGTTGATTTTTGAAAAAC---------A-A-AAATTGAAAATACCTCAACGTGTCT
* *
113699664 TGAGACTCAACTCATTTCTCGCAATATGAGTTGATTTTT
424 TGAGGCTCAACTCA--TCTAGCAATATGAGTTGATTTTT
* ** * * *
113699703 TTGAAAAGTAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTATTGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
113699768 GTTGATTTTTTT
65 GTTGATTTTTTT
113699780 GAAACAGAAA
Statistics
Matches: 875, Mismatches: 65, Indels: 148
0.80 0.06 0.14
Matches are distributed among these distances:
457 54 0.06
458 68 0.08
459 10 0.01
460 2 0.00
461 1 0.00
462 55 0.06
463 10 0.01
465 52 0.06
466 6 0.01
467 1 0.00
468 6 0.01
469 102 0.12
470 2 0.00
471 15 0.02
472 113 0.13
473 204 0.23
474 63 0.07
476 6 0.01
477 19 0.02
478 11 0.01
479 12 0.01
480 11 0.01
481 50 0.06
482 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (460 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTTATTGAAAAGCAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
TCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTAAAAGCAGAAATTGAAATTACCTCA
ACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACACAAAAATTGAA
ATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGTAATTAAAC
AGAAATTGAAATACTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTAGCAATATGAGTTGA
TTTTT
Found at i:113699542 original size:542 final size:536
Alignment explanation
Indices: 113698530--113699790 Score: 1587
Period size: 542 Copynumber: 2.3 Consensus size: 536
113698520 AGTTGATTTT
* *
113698530 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAACAC-AAAATTG-AAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
** * * *
113698595 GTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 GTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA-C-CT
*
113698660 CGCAATATGAGTTGAATTTTTTTGAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACG
126 AGCAATATGAGTTG-A----TTT-----T-T---TTG-AAA-CAGAAATTGAAATTACCTCAACG
* *
113698725 TGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAAT
175 TGCCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAAT
* *
113698790 ACCTCAGCATGTCTTGAGGCTCAACTCACTAGCAATATGAGTTGATTTTTTTGACAACAGAAATT
240 ACCTCAACATGCCTTGAGGCTCAACTCACTAGCAATATGAGTTGA-TTTTTTGACAACAGAAATT
113698855 GAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAA
304 GAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAA-TTTTTTGAA
* * * *
113698920 AAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTT
368 AAATATAAATTGAAAAGCAAAAATTGAAATTACATCAACGTGCCTCGAGGCTCAACTCACCTCTC
* *
113698985 GCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
433 GCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT
** * *
113699050 CATTTCTCGTAATATGAGTTGATTTTTG-AAAA-ATAGA
498 CACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAA
* * * **
113699087 TTGAAACACAAAATTGACAATACATCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAACACAAAATTGA-AATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
* *
113699152 TTGA-TTTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCA-CTAGCA
65 TTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTAGCA
*
113699215 ATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCC-TGAAGCTCAACTC
130 ATATGAGTTGATTTTTTTGA-AACAGAAATTGAAATTACCTCAACGTG-CCTTGAAGCTCAACTC
* * *
113699279 ACCTCTCGCAATATGAGTTGAATTTTTTTTAAATTGAAAAGCAGAAATTGAAAATTACCTCAACG
193 ACCTCTCGCAATATGAGTTG-A-TTTTTTGAAA--G---A-CAAAAATTGAAAA-TACCTCAACA
*
113699344 TGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTGACAAACAGAAATTGAAATT
249 TGCCTTGAGGCTCAACTCA---CTAGCAATATGAGTTGATTTTTTGAC-AACAGAAATTGAAATT
* ** *
113699408 ACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTG-A-TTTTTG-AAAA-ATA
310 ACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAATATA
* *
113699469 GATTGAAACA-CAAAAATTGACAA-TACATCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAAT
375 AATTGAAA-AGCAAAAATTGA-AATTACATCAACGTGCCTCGAGGCTCAACTCACCTCTCGCAAT
*
113699532 ATGAGTTGATTTTTGAAAAACAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCT
438 ATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
113699597 CTCGCAATATGAGTTGATTTTTGAAAAACATAAA
503 CTCGCAATATGAGTTGATTTTTGAAAAACATAAA
* * *
113699631 TTG-AACA-GAAATTGAAACTACCTCAACGTGTCTTGAGACTCAACTCATTTCTCGCAATATGAG
1 TTGAAACACAAAATTGAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
** **
113699694 TTGATTTTTTTGAAAAGTAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTATT
65 TTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTA--
113699759 GCAATATGAGTTGATTTTTTTGAAACAGAAAT
127 GCAATATGAGTTGATTTTTTTGAAACAGAAAT
113699791 AAAAACATCA
Statistics
Matches: 623, Mismatches: 55, Indels: 63
0.84 0.07 0.09
Matches are distributed among these distances:
536 56 0.09
537 8 0.01
538 9 0.01
540 2 0.00
541 3 0.00
542 186 0.30
543 16 0.03
544 72 0.12
545 29 0.05
546 21 0.03
547 82 0.13
548 16 0.03
550 1 0.00
551 15 0.02
554 46 0.07
555 1 0.00
556 52 0.08
557 8 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (536 bp):
TTGAAACACAAAATTGAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
TGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTAGCAA
TATGAGTTGATTTTTTTGAAACAGAAATTGAAATTACCTCAACGTGCCTTGAAGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAACATGCCTTGAGGCT
CAACTCACTAGCAATATGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
AAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTGAAAAGCAAAAA
TTGAAATTACATCAACGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAACATAAA
Found at i:113699562 original size:158 final size:159
Alignment explanation
Indices: 113699163--113699777 Score: 747
Period size: 158 Copynumber: 3.9 Consensus size: 159
113699153 TGATTTTTGA
* * * *
113699163 AAAACAAAAATTGAAAA-TACCTCAGCATGTCTTGAGGCTCAACTCA---CTAGCAATATGAGTT
1 AAAACAAAAATTGAAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
113699224 GATTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGC
66 GA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
**
113699288 AATATGAGTTGAATTTTT----TTTAAATTG
130 AATATGAGTTG-ATTTTTGAAAAATAAATTG
* * *
113699315 AAAAGCAGAAATTGAAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGT
1 AAAA-CAAAAATTGAAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * ** *
113699380 TGA-TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGT
65 TGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
*
113699444 AATATGAGTTGATTTTTGAAAAATAGATTG
130 AATATGAGTTGATTTTTGAAAAATAAATTG
* * * *
113699474 AAACACAAAAATTGACAA-TACATCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAA-ACAAAAATTGAAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
113699538 TGA-TTTTTGAAAAACAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
65 TGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
113699602 AATATGAGTTGATTTTTGAAAAACATAAATTG
130 AATATGAGTTGATTTTTG-AAAA-ATAAATTG
* * * **
113699634 --AACAGAAATTG-AAACTACCTCAACGTGTCTTGAGACTCAACTCATTTCTCGCAATATGAGTT
1 AAAACAAAAATTGAAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
** ** * * *
113699696 GATTTTTTTGAAAAGTAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTATTGC
66 GA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
113699761 AATATGAGTTGATTTTT
130 AATATGAGTTGATTTTT
113699778 TTGAAACAGA
Statistics
Matches: 403, Mismatches: 44, Indels: 25
0.85 0.09 0.05
Matches are distributed among these distances:
152 4 0.01
153 12 0.03
154 26 0.06
155 12 0.03
156 61 0.15
157 67 0.17
158 119 0.30
159 94 0.23
160 8 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (159 bp):
AAAACAAAAATTGAAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTGAAAAATAAATTG
Found at i:113699590 original size:73 final size:73
Alignment explanation
Indices: 113699471--113699777 Score: 312
Period size: 73 Copynumber: 4.0 Consensus size: 73
113699461 GAAAAATAGA
* * * *
113699471 TTGAAACACAAAAATTGACAATA-CATCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATATC-TCAACGTGTCCT-GAGGCTCAACTCACCTCTCGCAATAT
113699534 GAGTTGATTT
64 GAGTTGATTT
*
113699544 TTGAAAAACAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATATCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
113699609 GTTGATTT
66 GTTGATTT
* * * **
113699617 TTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGACTCAACTCATTTC
1 TTGAAAAACAGAAATTG---A-AAA-T---A-T--CTCAACGTGTCCTGAGGCTCAACTCACCTC
113699682 TCGCAATATGAGTTGATTTTT
55 TCGCAATATGAGTTGA--TTT
** * * * * *
113699703 TTGAAAAGTAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTATTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATATCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
113699768 GTTGATTT
66 GTTGATTT
113699776 TT
1 TT
113699778 TTGAAACAGA
Statistics
Matches: 200, Mismatches: 19, Indels: 30
0.80 0.08 0.12
Matches are distributed among these distances:
73 85 0.43
74 4 0.02
75 40 0.20
76 1 0.00
77 3 0.01
78 2 0.01
81 2 0.01
82 4 0.02
83 1 0.00
84 41 0.20
86 17 0.09
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATATCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:113699763 original size:75 final size:75
Alignment explanation
Indices: 113699637--113699783 Score: 231
Period size: 75 Copynumber: 2.0 Consensus size: 75
113699627 TAAATTGAAC
* ** *
113699637 AGAAATTGAAACTACCTCAACGTGTCTTGAGACTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGACTCAACTCACCTATCGCAATATGAGTTGATTTT
113699702 TTTGAAAAGT
66 TTTGAAAAGT
* * *
113699712 AGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTATTGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGACTCAACTCACCTATCGCAATATGAGTTGATTTT
113699777 TTTGAAA
66 TTTGAAA
113699784 CAGAAATAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (75 bp):
AGAAATTGAAAATACCTCAACGTGTCTTGAGACTCAACTCACCTATCGCAATATGAGTTGATTTT
TTTGAAAAGT
Found at i:113708058 original size:12 final size:12
Alignment explanation
Indices: 113708038--113708073 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
113708028 TGGGATATGC
*
113708038 AATGAATGAATG
1 AATGCATGAATG
113708050 AATGCATGAATG
1 AATGCATGAATG
*
113708062 AATGCATAAATG
1 AATGCATGAATG
113708074 TCAAATGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.47, C:0.06, G:0.22, T:0.25
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:113711337 original size:55 final size:55
Alignment explanation
Indices: 113711276--113711385 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
113711266 GATTTTCTAT
113711276 TATTTCTTTTTCTATTTTGTAGGTGATGGTGGTAGACAATGGATATCAAAAATGG
1 TATTTCTTTTTCTATTTTGTAGGTGATGGTGGTAGACAATGGATATCAAAAATGG
113711331 TATTTCTTTTTCTATTTTGTAGGTGATGGTGGTAGACAATGGATATCAAAAATGG
1 TATTTCTTTTTCTATTTTGTAGGTGATGGTGGTAGACAATGGATATCAAAAATGG
113711386 GAGGAAAAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.42
Consensus pattern (55 bp):
TATTTCTTTTTCTATTTTGTAGGTGATGGTGGTAGACAATGGATATCAAAAATGG
Found at i:113712085 original size:16 final size:18
Alignment explanation
Indices: 113712051--113712088 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
113712041 ATCCTTATTT
*
113712051 AAATAAAATATAATGGTA
1 AAATAAAATATAATAGTA
113712069 AAATAAAATA-AA-AGTA
1 AAATAAAATATAATAGTA
113712085 AAAT
1 AAAT
113712089 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 2 0.11
18 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATAAAATATAATAGTA
Found at i:113715020 original size:30 final size:30
Alignment explanation
Indices: 113714983--113715103 Score: 188
Period size: 30 Copynumber: 4.0 Consensus size: 30
113714973 TAAATCTTAG
*
113714983 CCTTTTCCACCACCAATTCCACTAGCCACA
1 CCTTTTCCACCACCAAATCCACTAGCCACA
* * *
113715013 GCTTTTCCACCACCAAATCCATTAGCCACT
1 CCTTTTCCACCACCAAATCCACTAGCCACA
*
113715043 CCTTTTCCACCACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAAATCCACTAGCCACA
*
113715073 CCTTTTTCACCACCAAATCCACTAGCCACA
1 CCTTTTCCACCACCAAATCCACTAGCCACA
113715103 C
1 C
113715104 TTGCTCCATT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.27, C:0.45, G:0.04, T:0.23
Consensus pattern (30 bp):
CCTTTTCCACCACCAAATCCACTAGCCACA
Found at i:113715122 original size:60 final size:60
Alignment explanation
Indices: 113714988--113715147 Score: 189
Period size: 60 Copynumber: 2.7 Consensus size: 60
113714978 CTTAGCCTTT
* * * * *
113714988 TCCACCACCAATTCCACTAGCCACAGCTTTTCCACCACCAAATCCATTAGCCACTCCTTT
1 TCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAAATCCACTAGCCACTACTTC
*
113715048 TCCACCACCAACTCCACTAGCCACACCTTTTTCACCACCAAATCCACTAGCCAC-ACTTGC
1 TCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAAATCCACTAGCCACTACTT-C
** * * *
113715108 TCCATTACCTACTCCACTAACCACA-CTTACTCCACCACCA
1 TCCACCACCAACTCCACTAGCCACACCTT-TTCCACCACCA
113715148 CTTGTACCTA
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
59 6 0.07
60 80 0.93
ACGTcount: A:0.28, C:0.46, G:0.04, T:0.23
Consensus pattern (60 bp):
TCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAAATCCACTAGCCACTACTTC
Found at i:113715722 original size:23 final size:24
Alignment explanation
Indices: 113715640--113715762 Score: 92
Period size: 23 Copynumber: 5.2 Consensus size: 24
113715630 ATATTTCTTA
*
113715640 ATATT-ATA-TATATTATATATAT
1 ATATTAATACTATATTATGTATAT
** * *
113715662 ATATTCTTTTAATATATTAGGTATAT
1 ATA-T-TAATACTATATTATGTATAT
* * * *
113715688 -TCTAAATTCTATATTACGTATAT
1 ATATTAATACTATATTATGTATAT
*
113715711 ATATT-ATACTATTTTATGTATAT
1 ATATTAATACTATATTATGTATAT
*
113715734 ATATTTAATACTATATTATTTATAT
1 ATA-TTAATACTATATTATGTATAT
113715759 ATAT
1 ATAT
113715763 ATTTTACATG
Statistics
Matches: 77, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
22 3 0.04
23 33 0.43
24 7 0.09
25 22 0.29
26 12 0.16
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (24 bp):
ATATTAATACTATATTATGTATAT
Found at i:113715734 original size:25 final size:25
Alignment explanation
Indices: 113715640--113715836 Score: 111
Period size: 25 Copynumber: 8.0 Consensus size: 25
113715630 ATATTTCTTA
*
113715640 ATATTATA-TATATTATATATATAT
1 ATATTATACTATATTATGTATATAT
* * * *
113715664 ATTCTTTTAATATATTAGGTATAT-T
1 A-TATTATACTATATTATGTATATAT
* * * *
113715689 CTA-AATTCTATATTACG--TATAT
1 ATATTATACTATATTATGTATATAT
*
113715711 ATATTATACTATTTTATGTATATAT
1 ATATTATACTATATTATGTATATAT
*
113715736 AT-TTAATACTATATTATTTATATAT
1 ATATT-ATACTATATTATGTATATAT
* * * *
113715761 ATATTTTAC-ATGTTATCTTATGTAT
1 ATATTATACTATATTAT-GTATATAT
* * *
113715786 ATATTTTAATTATATTATGTATGTAT
1 ATATTAT-ACTATATTATGTATATAT
* * * *
113715812 TTTTTACACTATATTATGTACATAT
1 ATATTATACTATATTATGTATATAT
113715837 TTTTAATATT
Statistics
Matches: 131, Mismatches: 31, Indels: 21
0.72 0.17 0.11
Matches are distributed among these distances:
21 3 0.02
22 3 0.02
23 19 0.15
24 10 0.08
25 65 0.50
26 25 0.19
27 6 0.05
ACGTcount: A:0.36, C:0.06, G:0.05, T:0.54
Consensus pattern (25 bp):
ATATTATACTATATTATGTATATAT
Found at i:113715829 original size:47 final size:47
Alignment explanation
Indices: 113715659--113715865 Score: 129
Period size: 48 Copynumber: 4.3 Consensus size: 47
113715649 ATATTATATA
* * * *
113715659 TATATATTCTTTTA-A-TATATTAGGTATAT-TCTAAATTCTATATTACG
1 TATATATT-TTTTACACTATATTATGTATATATTTTAA-T-TATATTATG
* * * *
113715706 TATATA--TATTATACTATTTTATGTATATATATTTAATACTATATTATT
1 TATATATTTTTTACACTATATTATGTATATAT-TTTAAT--TATATTATG
* *
113715754 TATATATATATTTTACATGTTATCTTATGTATATATTTTAATTATATTATG
1 TATATAT-T-TTTTACA--CTATATTATGTATATATTTTAATTATATTATG
* * * *
113715805 TATGTATTTTTTACACTATATTATGTACATATTTTTAA-TATTATCACG
1 TATATATTTTTTACACTATATTATGTATATA-TTTTAATTA-TATTATG
*
113715853 TATTTATTTTTTA
1 TATATATTTTTTA
113715866 TATATGTACA
Statistics
Matches: 128, Mismatches: 19, Indels: 25
0.74 0.11 0.15
Matches are distributed among these distances:
44 4 0.03
45 1 0.01
46 12 0.09
47 23 0.18
48 40 0.31
49 7 0.05
50 1 0.01
51 14 0.11
52 5 0.04
53 6 0.05
54 15 0.12
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.56
Consensus pattern (47 bp):
TATATATTTTTTACACTATATTATGTATATATTTTAATTATATTATG
Found at i:113715847 original size:20 final size:20
Alignment explanation
Indices: 113715822--113715880 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
113715812 TTTTTACACT
113715822 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
113715842 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
113715865 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
113715881 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:113716016 original size:16 final size:15
Alignment explanation
Indices: 113715992--113716026 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
113715982 TAATTATTAT
113715992 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
113716008 TATTTTAATATTTTA
1 TATTCTAATATTTTA
113716023 TATT
1 TATT
113716027 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:113726134 original size:73 final size:72
Alignment explanation
Indices: 113726015--113726168 Score: 263
Period size: 73 Copynumber: 2.1 Consensus size: 72
113726005 ATTTCCGTTT
113726015 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGC
*
113726080 TGAGGTAA
65 CGAGGTAA
*
113726088 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCC
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCC
*
113726153 GAGGTAT
66 GAGGTAA
*
113726160 TTTTAATTT
1 TTTCAATTT
113726169 CTATTTTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
72 21 0.27
73 56 0.73
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (72 bp):
TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCC
GAGGTAA
Found at i:113726181 original size:14 final size:13
Alignment explanation
Indices: 113726157--113726203 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
113726147 CACGCCGAGG
113726157 TATTTTTAATTTC
1 TATTTTTAATTTC
113726170 TATTTTTCAATTTC
1 TATTTTT-AATTTC
**
113726184 TGCTTTTAATTTC
1 TATTTTTAATTTC
*
113726197 TGTTTTT
1 TATTTTT
113726204 CAAAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.17, C:0.11, G:0.04, T:0.68
Consensus pattern (13 bp):
TATTTTTAATTTC
Found at i:113726225 original size:99 final size:100
Alignment explanation
Indices: 113726091--113726366 Score: 425
Period size: 99 Copynumber: 2.8 Consensus size: 100
113726081 GAGGTAATTT
* *
113726091 CAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCCGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* * *
113726155 GGTATTTTTAATTTCTATTTTTCAATTTCTG-CTTT
66 GGTATTTTCAATTTCT-GTTTTCAATTTCTGCCTTA
* *
113726190 TAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
113726255 GGTATTTTCAATTTCTGTTTTCAATTTTTGCCTTA
66 GGTATTTTCAATTTCTGTTTTCAATTTCTGCCTTA
* *
113726290 CAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
113726353 GGTATTTTCAATTT
66 GGTATTTTCAATTT
113726367 TCGTTTTTTT
Statistics
Matches: 163, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
98 61 0.37
99 62 0.38
100 40 0.25
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (100 bp):
CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
GGTATTTTCAATTTCTGTTTTCAATTTCTGCCTTA
Found at i:113726263 original size:86 final size:85
Alignment explanation
Indices: 113726173--113726862 Score: 382
Period size: 86 Copynumber: 8.1 Consensus size: 85
113726163 TAATTTCTAT
*
113726173 TTTTCAATTTCTGCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTG-TTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
113726238 GCCTCAGGGCACGCTGAGGTA
65 GCCTCAGGGCACGCTGAGGTA
* **
113726259 TTTTCAATTTCTGTTTTCAATTTTTGCCTTACAAATTCTGCTTTTCAAATCAACTCATATTGCGA
1 TTTTCAATTTCTGTTTT-AATTTATG--TT-----TT-T-C---AAAAATCAACTCATATTGCGA
*
113726324 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
53 GAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
* *** *
113726357 TTTTCAATTTTCGTTTTTTTAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
1 TTTTCAA-TTTC--TGTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
113726422 GAGCCTCA-AG-ACGCTGAGGTA
63 GAGCCTCAGGGCACGCTGAGGTA
* *
113726443 ATTTCAA---------T--TTT-TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTGTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
113726496 CCTCATGACACGCTGAGGTA
66 CCTCAGGGCACGCTGAGGTA
* *
113726516 TTTTCAAATTC-----T-A--T-T-TTTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGTTTTAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
113726571 GCCTC-GGGACACGCTGAGGTA
65 GCCTCAGGG-CACGCTGAGGTA
* *
113726592 TTTTCAATTTCTGCTTTTCA---A--------AAGAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTG-TTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
113726646 GTCTC-GGGCCACACGTCGAGGTC
65 GCCTCAGGG-CACGC-T-GAGGTA
* * * *
113726669 CTTTCAAATTCTGTTTTTAATTTTTTTTAATTTATGTGTTTTAAAAAAATCAGCTCATATTGCGA
1 TTTTCAATTTCTG-----------TTTTAATTTATGT-TTTT-CAAAAATCAACTCATATTGCGA
* * * * *
113726734 GAGGTGGGTTGAACCTCA-AG-ACACTGAGGTG
53 GAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
* *
113726765 TTTTC-ATTCTCT-TTTCAATTTCTGTTTTAATCAAAAAAATCAACTCATATTGCGAGAGGTGAG
1 TTTTCAATT-TCTGTTTTAATTTATGTTTT--TC--AAAAATCAACTCATATTGCGAGAGGTGAG
* * * **
113726828 TTGAACCTCAAGTCACATTGAGGTA
61 TTGAGCCTCAGGGCACGCTGAGGTA
113726853 TTTTCAATTT
1 TTTTCAATTT
113726863 ATCATCAAAA
Statistics
Matches: 484, Mismatches: 53, Indels: 132
0.72 0.08 0.20
Matches are distributed among these distances:
71 43 0.09
72 3 0.01
73 17 0.04
74 1 0.00
75 49 0.10
76 63 0.13
77 17 0.04
82 1 0.00
83 4 0.01
84 11 0.02
85 5 0.01
86 74 0.15
87 5 0.01
88 53 0.11
89 3 0.01
90 1 0.00
93 3 0.01
94 1 0.00
95 3 0.01
96 12 0.02
97 1 0.00
98 64 0.13
99 4 0.01
100 41 0.08
101 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (85 bp):
TTTTCAATTTCTGTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAGGGCACGCTGAGGTA
Found at i:113726342 original size:98 final size:99
Alignment explanation
Indices: 113726098--113726366 Score: 409
Period size: 98 Copynumber: 2.7 Consensus size: 99
113726088 TTTCAATTTA
*
113726098 TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCCGAGGTATTT
1 TGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
* * ** *
113726162 TTAATTTCTATTTTTCAATTTCTGCTTTTAATTTC
65 TCAATTTCTAGTTTTCAATTTCTGCTTACAAATTC
*
113726197 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
1 TGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
*
113726262 TCAATTTCT-GTTTTCAATTTTTGCCTTACAAATTC
65 TCAATTTCTAGTTTTCAATTTCTG-CTTACAAATTC
*
113726297 TGCTTTTC-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
113726361 CAATTT
66 CAATTT
113726367 TCGTTTTTTT
Statistics
Matches: 158, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
98 61 0.39
99 57 0.36
100 40 0.25
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (99 bp):
TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
CAATTTCTAGTTTTCAATTTCTGCTTACAAATTC
Found at i:113726652 original size:75 final size:74
Alignment explanation
Indices: 113726390--113726684 Score: 366
Period size: 76 Copynumber: 4.0 Consensus size: 74
113726380 TTATGTTTCA
* * * *
113726390 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC--AAGACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
* *
113726453 TTGTTTGTC
66 CTGTTTATC
**
113726462 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCATGACACGCTGAGGTATTTTCAAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTC-AATT
* *
113726526 CTATTTTTATC
65 -TCTGTTTATC
113726537 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
113726602 CTGCTTT-TC
66 CTG-TTTATC
* **
113726611 AAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACG-TCGAGGTCCTTTCA
1 AAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCA
*
113726675 AATTCTGTTT
62 ATTTCTGTTT
113726685 TTAATTTTTT
Statistics
Matches: 198, Mismatches: 15, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
71 37 0.19
73 16 0.08
74 12 0.06
75 51 0.26
76 61 0.31
77 21 0.11
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (74 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTATC
Found at i:113726898 original size:71 final size:71
Alignment explanation
Indices: 113726798--113726933 Score: 236
Period size: 71 Copynumber: 1.9 Consensus size: 71
113726788 GTTTTAATCA
*
113726798 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTT
113726863 ATCATC
66 ATCATC
* * *
113726869 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTT
113726934 CTGCTCAATT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (71 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTT
ATCATC
Found at i:113727027 original size:156 final size:155
Alignment explanation
Indices: 113726707--113727060 Score: 457
Period size: 156 Copynumber: 2.3 Consensus size: 155
113726697 AATTTATGTG
* * * * *
113726707 TTTTAAAAAAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTCAAGACACTGAGGTGTTTTCAT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACTGAGGTATTTTCAT
** *
113726772 TCTCTTTTCAATTTCTGTTTTAATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC
66 TCTCTGCTCAATTTATGTTTT-ATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC
113726837 AAGTCACATTGAGGTATTTTCAATTTA
130 AAGTCACA-TGAGGTATTTTCAATTTA
** *
113726864 TCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTC
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC--TGAGGTATTTTC
*
113726929 AATT-TCTGCTCAATTTATGTTTT-TC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
64 -ATTCTCTGCTCAATTTATGTTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC
* * *
113726991 TCACGT-GC-TGAGGTGTTTTCAATTTCTA
128 TCAAGTCACATGAGGTATTTTCAA-TT-TA
*
113727019 TTTTTCAAAAAATCAACTCCTATTGCGAGAGGTGAGTTGAGC
1 -TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
113727061 ATTGGCTTAC
Statistics
Matches: 173, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
153 13 0.08
154 2 0.01
155 3 0.02
156 79 0.46
157 46 0.27
159 27 0.16
160 3 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (155 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACTGAGGTATTTTCAT
TCTCTGCTCAATTTATGTTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA
AGTCACATGAGGTATTTTCAATTTA
Found at i:113727247 original size:76 final size:74
Alignment explanation
Indices: 113726938--113727308 Score: 426
Period size: 75 Copynumber: 5.1 Consensus size: 74
113726928 CAATTTCTGC
* * **
113726938 TCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC---ACGTGCT
1 TCAATTTCTG-TTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCT
113727000 GAGGT-GTTT
65 GAGGTAGTTT
* * * * * *
113727009 TCAATTTCTATTTTTCAAAAAATCAACTCCTATTGCGAGAGGTGAGTTGAGCATTGGCTTACACG
1 TCAATTTCT-GTTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACG
*
113727074 CTGAGGTATTTT
63 CTGAGGTAGTTT
*
113727086 TCAATTTCTGTT-T------GTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGC
1 TCAATTTCTGTTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGC
113727144 TGAGGT-GTTT
64 TGAGGTAGTTT
* *
113727154 TCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 TCAATTTCTGTTATC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCT
113727219 GAGGTAGTTT
65 GAGGTAGTTT
** *
113727229 TCAATTTCTGTTCATCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCT
1 TCAATTTCTGTT-ATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCT
113727294 GAGGTA-TTT
65 GAGGTAGTTT
113727303 TCAATT
1 TCAATT
113727309 AATGTTTTTT
Statistics
Matches: 259, Mismatches: 22, Indels: 35
0.82 0.07 0.11
Matches are distributed among these distances:
68 15 0.06
69 45 0.17
71 49 0.19
74 21 0.08
75 68 0.26
76 49 0.19
77 12 0.05
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (74 bp):
TCAATTTCTGTTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG
AGGTAGTTT
Found at i:113727479 original size:87 final size:87
Alignment explanation
Indices: 113727246--113727539 Score: 273
Period size: 88 Copynumber: 3.4 Consensus size: 87
113727236 CTGTTCATCA
113727246 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCAC-GCTGAGGTATTTTCAATTA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGGCACTGCTGAGGTATTTTCAA--A
* *
113727310 ATGT-TTTTTCAATTTATGCTTTTC
63 ATCTGTTTTACAATTTATGCTTTTC
* * * *
113727334 AAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGG-CAC-TGCTGAGGTATTTTCAAAA
113727399 TCTGTTTTACAAATTT-TG-TTTT-
64 TCTGTTTTAC-AATTTATGCTTTTC
* * * * * * **
113727421 AAAAATCAACTCATATTGGGATAAGTAAGTTGAGCCTTGGCGCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGG-GCAC-TGCTGAGGTATTTTCAAAA
*
113727486 TCTGTTTT-TAATGTT-TAG-TTTT-
64 TCTGTTTTACAAT-TTAT-GCTTTTC
* *
113727508 AAAGAGTCAATTCATATTGCGAGAAATGAGTT
1 AAA-AATCAACTCATATTGCGAGAAATGAGTT
113727540 AAGCTCAGGA
Statistics
Matches: 171, Mismatches: 26, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
85 3 0.02
86 3 0.02
87 69 0.40
88 70 0.41
89 7 0.04
90 19 0.11
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGCACTGCTGAGGTATTTTCAAAATC
TGTTTTACAATTTATGCTTTTC
Found at i:113727537 original size:175 final size:175
Alignment explanation
Indices: 113727246--113727561 Score: 408
Period size: 175 Copynumber: 1.8 Consensus size: 175
113727236 CTGTTCATCA
* * *
113727246 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTAA
1 AAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCGGCGCACGCTGAGCTATTTTCAATTAA
* * *
113727311 TGTTTTTTCAATTTATGCTTTTCAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTC-GGG
66 TGTTTTTTCAATTTATGCTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTAAG-CTCAGGA
113727375 TCACATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTGTTTT
130 TCACATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTGTTTT
* * * *
113727421 AAAAATCAACTCATATTGGGATAAGTAAGTTGAGCCTTGGCGCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCGGCGCAC--GCTGAGCTATTTTCAATT
** * * *
113727486 TCTG-TTTTT-AATGTT-TAG-TTTTAAAGAGTCAATTCATATTGCGAGAAATGAGTTAAGCTCA
64 AATGTTTTTTCAAT-TTAT-GCTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTAAGCTCA
*
113727547 GGATCACATGCCGAG
127 GGATCACATACCGAG
113727562 TAAAGAATCA
Statistics
Matches: 120, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
174 3 0.03
175 90 0.75
176 8 0.07
177 19 0.16
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (175 bp):
AAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCGGCGCACGCTGAGCTATTTTCAATTAA
TGTTTTTTCAATTTATGCTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTAAGCTCAGGAT
CACATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTGTTTT
Found at i:113728226 original size:30 final size:29
Alignment explanation
Indices: 113728192--113728277 Score: 108
Period size: 30 Copynumber: 3.0 Consensus size: 29
113728182 TAAATCCTAG
*
113728192 CCTTTGCCACTACCAACTCCACTAGACACA
1 CCTTTGCCAC-ACCAACTCCACTAGCCACA
*
113728222 CCTTTTCCACCACCAACTCCACTAGCCACA
1 CCTTTGCCA-CACCAACTCCACTAGCCACA
113728252 -C-TTG-C-CACCAACTCCACTAGCCACA
1 CCTTTGCCACACCAACTCCACTAGCCACA
113728277 C
1 C
113728278 TCCACCACCA
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
25 20 0.39
27 1 0.02
28 2 0.04
29 1 0.02
30 26 0.51
31 1 0.02
ACGTcount: A:0.28, C:0.48, G:0.06, T:0.19
Consensus pattern (29 bp):
CCTTTGCCACACCAACTCCACTAGCCACA
Found at i:113728259 original size:25 final size:25
Alignment explanation
Indices: 113728231--113728305 Score: 109
Period size: 25 Copynumber: 3.0 Consensus size: 25
113728221 ACCTTTTCCA
113728231 CCACCAACTCCACTAGCCACACTTG
1 CCACCAACTCCACTAGCCACACTTG
**
113728256 CCACCAACTCCACTAGCCACACTCCA
1 CCACCAACTCCACTAGCCACACT-TG
113728282 CCACCAA-TCCA-TAGCCACACTTG
1 CCACCAACTCCACTAGCCACACTTG
113728305 C
1 C
113728306 TCCATTACCT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
23 1 0.02
24 10 0.22
25 27 0.60
26 7 0.16
ACGTcount: A:0.29, C:0.49, G:0.07, T:0.15
Consensus pattern (25 bp):
CCACCAACTCCACTAGCCACACTTG
Found at i:113728330 original size:54 final size:51
Alignment explanation
Indices: 113728227--113728332 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 51
113728217 ACACACCTTT
*
113728227 TCCACCACCAACTCCACTAGCCACACTTGCCACCAACTCCACTAGCCACAC
1 TCCACCACCAACTCCACTAGCCACACTTGCCACCAACTCCACTAACCACAC
*
113728278 TCCACCACCAA-TCCA-TAGCCACACTTGCTCCATTACCTACTCCACTAACCACAC
1 TCCACCACCAACTCCACTAGCCACACTTG--CC---ACCAACTCCACTAACCACAC
113728332 T
1 T
113728333 TGCTCCACCA
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
49 12 0.25
50 4 0.08
51 13 0.27
54 19 0.40
ACGTcount: A:0.29, C:0.48, G:0.05, T:0.18
Consensus pattern (51 bp):
TCCACCACCAACTCCACTAGCCACACTTGCCACCAACTCCACTAACCACAC
Found at i:113729033 original size:25 final size:25
Alignment explanation
Indices: 113728890--113729036 Score: 111
Period size: 25 Copynumber: 5.8 Consensus size: 25
113728880 ATTCTAAATT
* * * *
113728890 CTATATTACGTATATATATATTATA
1 CTATATTATGTATATATTTTTTACA
* * * *
113728915 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATTTTTTACA
*
113728940 CTATATTATTTATATATATATTTTACA
1 CTATATTATGTATATAT-T-TTTTACA
* *
113728967 TGTTATCTTATGTATATA--TTTTA-A
1 --CTATATTATGTATATATTTTTTACA
* *
113728991 TTATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATTTTTTACA
*
113729016 CTATATTATGTACATATTTTT
1 CTATATTATGTATATATTTTT
113729037 AATATTATCA
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
22 14 0.14
24 6 0.06
25 59 0.61
27 5 0.05
29 13 0.13
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (25 bp):
CTATATTATGTATATATTTTTTACA
Found at i:113729213 original size:16 final size:15
Alignment explanation
Indices: 113729189--113729223 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
113729179 TAATTATTAT
113729189 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
113729205 TATTTTAATATTTTA
1 TATTCTAATATTTTA
113729220 TATT
1 TATT
113729224 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:113732998 original size:37 final size:37
Alignment explanation
Indices: 113732948--113733032 Score: 134
Period size: 37 Copynumber: 2.3 Consensus size: 37
113732938 ACAAGTGACA
*
113732948 AGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATC
1 AGTGACAAGTGGTAGCCTCAGCTACACTTATCTGATC
* * *
113732985 AGTGACAAGTGGTAGCTTTAGCTACACTTATCTGATT
1 AGTGACAAGTGGTAGCCTCAGCTACACTTATCTGATC
113733022 AGTGACAAGTG
1 AGTGACAAGTG
113733033 ACAAGTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (37 bp):
AGTGACAAGTGGTAGCCTCAGCTACACTTATCTGATC
Found at i:113734837 original size:9 final size:9
Alignment explanation
Indices: 113734823--113734861 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
113734813 TAACATATTG
113734823 TTATTTTTA
1 TTATTTTTA
113734832 TTA-TTTTA
1 TTATTTTTA
113734840 TTATTTTTA
1 TTATTTTTA
113734849 TT-TTTATTA
1 TTATTT-TTA
113734858 TTAT
1 TTAT
113734862 CATGGTACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 11 0.41
9 15 0.56
10 1 0.04
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTATTTTTA
Found at i:113735370 original size:19 final size:19
Alignment explanation
Indices: 113735346--113735382 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
113735336 TCGTAGACCA
113735346 AAATCGTTT-TTAATAAATC
1 AAATCGTTTATTAA-AAATC
113735365 AAATCGTTTATTAAAAAT
1 AAATCGTTTATTAAAAAT
113735383 AACCACTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (19 bp):
AAATCGTTTATTAAAAATC
Found at i:113735762 original size:12 final size:12
Alignment explanation
Indices: 113735747--113735776 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
113735737 ATATCTAAAT
113735747 TTAATTATAATA
1 TTAATTATAATA
*
113735759 TTAATAATAATA
1 TTAATTATAATA
113735771 TTAATT
1 TTAATT
113735777 TATATAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TTAATTATAATA
Found at i:113736809 original size:1 final size:1
Alignment explanation
Indices: 113736805--113736831 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
113736795 TTTCTTTTAG
113736805 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
113736832 GACCATTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:113741185 original size:15 final size:14
Alignment explanation
Indices: 113741159--113741245 Score: 63
Period size: 15 Copynumber: 6.0 Consensus size: 14
113741149 TATTCTAATA
*
113741159 CTATTGTTATTTAT
1 CTATTTTTATTTAT
113741173 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
* *
113741188 CTATTTATATTTCT
1 CTATTTTTATTTAT
113741202 ACTATTATTCTA-TT-T
1 -CTATT-TT-TATTTAT
113741217 CTATTTATTATATT-T
1 CTATTT-TTAT-TTAT
*
113741232 CTATTTCTATTTAT
1 CTATTTTTATTTAT
113741246 ATACTAATAT
Statistics
Matches: 60, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
13 5 0.08
14 22 0.37
15 28 0.47
16 3 0.05
17 2 0.03
ACGTcount: A:0.24, C:0.10, G:0.01, T:0.64
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:113741198 original size:14 final size:15
Alignment explanation
Indices: 113741166--113741199 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
113741156 ATACTATTGT
*
113741166 TATTTATCTAATTTT
1 TATTTATCTAATTTA
113741181 TATTTATCT-ATTTA
1 TATTTATCTAATTTA
113741195 TATTT
1 TATTT
113741200 CTACTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTATCTAATTTA
Found at i:113741409 original size:25 final size:25
Alignment explanation
Indices: 113741381--113741429 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
113741371 CTCATTTCAA
* *
113741381 ATTTTTATACATTATTTACTTTAAT
1 ATTTTCATACATTATGTACTTTAAT
* *
113741406 ATTTTCATATATTATGTATTTTAA
1 ATTTTCATACATTATGTACTTTAA
113741430 ACTTTTTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (25 bp):
ATTTTCATACATTATGTACTTTAAT
Found at i:113743306 original size:19 final size:20
Alignment explanation
Indices: 113743282--113743322 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
113743272 AGGTGAGAAG
113743282 TAAAAA-TTTAGGGGGAAAA
1 TAAAAAGTTTAGGGGGAAAA
*
113743301 TAAAAAGTTTTGGGGGAAAA
1 TAAAAAGTTTAGGGGGAAAA
113743321 TA
1 TA
113743323 GTAGATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (20 bp):
TAAAAAGTTTAGGGGGAAAA
Found at i:113744146 original size:28 final size:28
Alignment explanation
Indices: 113744115--113744169 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
113744105 TTAAATATGA
113744115 TAAT-TTATTTTTTAATTTAATATTAAAT
1 TAATATTATTTTTTAATTTAA-ATTAAAT
* * *
113744143 TAATATTTTTTTTTCATTTCAATTAAA
1 TAATATTATTTTTTAATTTAAATTAAA
113744170 AATAACATGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 10 0.43
29 13 0.57
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (28 bp):
TAATATTATTTTTTAATTTAAATTAAAT
Found at i:113752206 original size:29 final size:30
Alignment explanation
Indices: 113752147--113752204 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
113752137 TCCGAGCCTT
*
113752147 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
113752177 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
113752205 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:113752434 original size:13 final size:13
Alignment explanation
Indices: 113752416--113752447 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
113752406 TTTCCAGCAA
113752416 TTATGAATTTATT
1 TTATGAATTTATT
113752429 TTATGAATTTATT
1 TTATGAATTTATT
*
113752442 TGATGA
1 TTATGA
113752448 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:113752655 original size:50 final size:50
Alignment explanation
Indices: 113752542--113752783 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
113752532 ATTTGGGTAA
* * *
113752542 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
113752598 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
113752648 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
113752698 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
113752748 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
113752784 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:113752731 original size:100 final size:103
Alignment explanation
Indices: 113752542--113752791 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
113752532 ATTTGGGTAA
113752542 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
113752607 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
113752648 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
113752710 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
113752748 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
113752792 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:113759797 original size:29 final size:30
Alignment explanation
Indices: 113759738--113759795 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
113759728 TCCGAGCCTT
*
113759738 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
113759768 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
113759796 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:113760025 original size:13 final size:13
Alignment explanation
Indices: 113760007--113760038 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
113759997 TTTCCAGCAA
113760007 TTATGAATTTATT
1 TTATGAATTTATT
113760020 TTATGAATTTATT
1 TTATGAATTTATT
*
113760033 TGATGA
1 TTATGA
113760039 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:113760246 original size:50 final size:50
Alignment explanation
Indices: 113760133--113760374 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
113760123 ATTTGGGTAA
* * *
113760133 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
113760189 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
113760239 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
113760289 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
113760339 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
113760375 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:113760322 original size:100 final size:103
Alignment explanation
Indices: 113760133--113760382 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
113760123 ATTTGGGTAA
113760133 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
113760198 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
113760239 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
113760301 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
113760339 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
113760383 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:113781033 original size:17 final size:17
Alignment explanation
Indices: 113781011--113781047 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
113781001 GGGAACTATG
113781011 ATAATTATTAGTAATTT
1 ATAATTATTAGTAATTT
113781028 ATAATTATTAGTAATTT
1 ATAATTATTAGTAATTT
113781045 ATA
1 ATA
113781048 TATGTAAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
ATAATTATTAGTAATTT
Found at i:113785482 original size:27 final size:25
Alignment explanation
Indices: 113785435--113785484 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
113785425 TTTAAATAAT
**
113785435 TAATATAAATTATTTGTAAAATTAA
1 TAATATAAAAAATTTGTAAAATTAA
113785460 TAATATAAAAAATATTGTTAAAATT
1 TAATATAAAAAAT-TTG-TAAAATT
113785485 TTAAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 3 0.14
27 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
TAATATAAAAAATTTGTAAAATTAA
Found at i:113785504 original size:30 final size:27
Alignment explanation
Indices: 113785456--113785524 Score: 70
Period size: 30 Copynumber: 2.4 Consensus size: 27
113785446 ATTTGTAAAA
113785456 TTAATA-ATATAAAAAATATTGTTAAA-ATT
1 TTAATATA-ATAAAAAATA-T-TTAAATA-T
*
113785485 TTAAATATAATAAATAATATTTAAATAT
1 TT-AATATAATAAAAAATATTTAAATAT
113785513 TTAATATAATAA
1 TTAATATAATAA
113785525 TATATAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
27 10 0.28
28 8 0.22
29 4 0.11
30 13 0.36
31 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (27 bp):
TTAATATAATAAAAAATATTTAAATAT
Found at i:113785509 original size:20 final size:21
Alignment explanation
Indices: 113785484--113785538 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 21
113785474 TTGTTAAAAT
113785484 TTTAAATATAATA-AATAATA
1 TTTAAATATAATATAATAATA
113785504 TTTAAATATTTAATATAATAATA
1 TTTAAATA--TAATATAATAATA
*
113785527 TATAAAATATAA
1 T-TTAAATATAA
113785539 ATCAATCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 8 0.27
22 8 0.27
23 8 0.27
24 6 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TTTAAATATAATATAATAATA
Found at i:113785510 original size:27 final size:27
Alignment explanation
Indices: 113785460--113785536 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 27
113785450 GTAAAATTAA
* * *
113785460 TAATATAAAAAATATTGTTAAAAT-TT
1 TAATATAATAAATAATATTAAAATATT
*
113785486 TAAATATAATAAATAATATTTAAATATT
1 T-AATATAATAAATAATATTAAAATATT
113785514 TAATATAAT-AAT-ATA-TAAAATAT
1 TAATATAATAAATAATATTAAAATAT
113785537 AAATCAATCT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
24 7 0.16
25 3 0.07
26 4 0.09
27 27 0.61
28 3 0.07
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (27 bp):
TAATATAATAAATAATATTAAAATATT
Found at i:113796163 original size:35 final size:35
Alignment explanation
Indices: 113796123--113796193 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
113796113 CACATAATTC
113796123 TATATGTATCTATGAGATTGAGTATGGAATTCTGT
1 TATATGTATCTATGAGATTGAGTATGGAATTCTGT
113796158 TATATGTATCTATGAGATTGAGTATGGAATTCTGT
1 TATATGTATCTATGAGATTGAGTATGGAATTCTGT
113796193 T
1 T
113796194 TACTCACTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.44
Consensus pattern (35 bp):
TATATGTATCTATGAGATTGAGTATGGAATTCTGT
Found at i:113804742 original size:17 final size:18
Alignment explanation
Indices: 113804720--113804756 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
113804710 TAATAAAAAT
113804720 ATAA-TTATATTATTT-TA
1 ATAATTTATA-TATTTGTA
113804737 ATAATTTATATATTTGTA
1 ATAATTTATATATTTGTA
113804755 AT
1 AT
113804757 TTTTAAAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
ATAATTTATATATTTGTA
Found at i:113808396 original size:3 final size:3
Alignment explanation
Indices: 113808388--113808412 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
113808378 TTCATCTTCA
113808388 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
113808413 AAAGAGTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:113809240 original size:11 final size:11
Alignment explanation
Indices: 113809224--113809250 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
113809214 ATAAAAATCC
113809224 ATTAATTAAAT
1 ATTAATTAAAT
113809235 ATTAATTAAAT
1 ATTAATTAAAT
113809246 ATTAA
1 ATTAA
113809251 ACACTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATTAATTAAAT
Found at i:113815888 original size:31 final size:31
Alignment explanation
Indices: 113815853--113815922 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
113815843 TATTTCTTTA
*
113815853 AATGTGTACAACTGAATCAAAA-TCAAAGTTT
1 AATGTGTACAACTGAACCAAAAGT-AAAGTTT
**
113815884 AATGTGTACATTTGAACCAAAAGTAAAGTTT
1 AATGTGTACAACTGAACCAAAAGTAAAGTTT
*
113815915 CATGTGTA
1 AATGTGTA
113815923 TAATTACATC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 33 0.97
32 1 0.03
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.31
Consensus pattern (31 bp):
AATGTGTACAACTGAACCAAAAGTAAAGTTT
Found at i:113818686 original size:18 final size:19
Alignment explanation
Indices: 113818650--113818687 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
113818640 TTTTAATTTC
*
113818650 TATTCCTGAATACTTTGTT
1 TATTCATGAATACTTTGTT
113818669 TATTCATGAATA-TTTGTT
1 TATTCATGAATACTTTGTT
113818687 T
1 T
113818688 CCTTGAGCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.55
Consensus pattern (19 bp):
TATTCATGAATACTTTGTT
Found at i:113824319 original size:56 final size:56
Alignment explanation
Indices: 113824259--113824373 Score: 230
Period size: 56 Copynumber: 2.1 Consensus size: 56
113824249 AAGTGTGGGT
113824259 TTTGAAATTAGGACATGTAATGGAAGAACAACAGTTATTTATCCATTAACAGGCTC
1 TTTGAAATTAGGACATGTAATGGAAGAACAACAGTTATTTATCCATTAACAGGCTC
113824315 TTTGAAATTAGGACATGTAATGGAAGAACAACAGTTATTTATCCATTAACAGGCTC
1 TTTGAAATTAGGACATGTAATGGAAGAACAACAGTTATTTATCCATTAACAGGCTC
113824371 TTT
1 TTT
113824374 AATGGTTTCT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (56 bp):
TTTGAAATTAGGACATGTAATGGAAGAACAACAGTTATTTATCCATTAACAGGCTC
Found at i:113833722 original size:18 final size:18
Alignment explanation
Indices: 113833698--113833743 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
113833688 TTATAAATAG
*
113833698 TATTATTTTCATATATCCT
1 TATTATTTTCAT-TATACT
113833717 TA-TATTTATCATTATACT
1 TATTATTT-TCATTATACT
113833735 TATTATTTT
1 TATTATTTT
113833744 ATCCTAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTATTTTCATTATACT
Found at i:113842557 original size:3 final size:3
Alignment explanation
Indices: 113842551--113842575 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
113842541 ATAATAATAC
113842551 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
113842576 AGTCTTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:113842992 original size:2 final size:2
Alignment explanation
Indices: 113842985--113843009 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
113842975 TGGCTCTTTT
113842985 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
113843010 TTCGTTCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:113847263 original size:42 final size:42
Alignment explanation
Indices: 113847196--113847283 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
113847186 GGTCTTCAAT
*
113847196 ATAATAATAATAATAATAATAAGTACTAGACAAAGATGAGTA
1 ATAACAATAATAATAATAATAAGTACTAGACAAAGATGAGTA
*
113847238 ATAACAATAATAATAATAATTAGTACTAGACAAAGATGAGTA
1 ATAACAATAATAATAATAATAAGTACTAGACAAAGATGAGTA
113847280 ATAA
1 ATAA
113847284 TAGCTAGGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.57, C:0.06, G:0.11, T:0.26
Consensus pattern (42 bp):
ATAACAATAATAATAATAATAAGTACTAGACAAAGATGAGTA
Found at i:113856037 original size:18 final size:18
Alignment explanation
Indices: 113856003--113856039 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
113855993 TGAATTTTCG
**
113856003 AATTCAAATAATTCGAAT
1 AATTCAAATAAACCGAAT
113856021 AATTCAAATAAACCGAAT
1 AATTCAAATAAACCGAAT
113856039 A
1 A
113856040 TAAATTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (18 bp):
AATTCAAATAAACCGAAT
Found at i:113856797 original size:17 final size:17
Alignment explanation
Indices: 113856775--113856826 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 17
113856765 AATTTCCCAA
113856775 AGTAATAATGTAATATT
1 AGTAATAATGTAATATT
*
113856792 AGTAATAATATAATATT
1 AGTAATAATGTAATATT
* **
113856809 ATTAATACCGTAATATT
1 AGTAATAATGTAATATT
113856826 A
1 A
113856827 ATAGAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (17 bp):
AGTAATAATGTAATATT
Found at i:113857140 original size:99 final size:97
Alignment explanation
Indices: 113857030--113857324 Score: 435
Period size: 91 Copynumber: 3.1 Consensus size: 97
113857020 TATGCTGTTG
* * *
113857030 TATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAACTATAGTTTAATATACTATTTTT
1 TATATTAATTTAGGCTTCAATTAACTAATTTTAAAGTTTAAACTGTAGTTTAACATAC--TTTTT
113857095 TTTTGTTTAATTTATGCTGTTGTACTTGTACTAT
64 TTTTGTTTAATTTATGCTGTTGTACTTGTACTAT
* * * *
113857129 TATATTAATTTAGGCTTCAATTAACTAATTTTAAATTTTAAACGGTAGCTTAACAAACTTTTTTT
1 TATATTAATTTAGGCTTCAATTAACTAATTTTAAAGTTTAAACTGTAGTTTAACATACTTTTTTT
113857194 TTGTTTAATTTATGC-----TA-TTGTACTAT
66 TTGTTTAATTTATGCTGTTGTACTTGTACTAT
*
113857220 TATATTAATTTAGGCTTCAATTAACTAATTTTAAAGTTTAAAATGTAGTTTAACATAC--TTTTT
1 TATATTAATTTAGGCTTCAATTAACTAATTTTAAAGTTTAAACTGTAGTTTAACATACTTTTTTT
*
113857283 TTGTTTAATTTATGCTGTTGTACCTGTACTAT
66 TTGTTTAATTTATGCTGTTGTACTTGTACTAT
113857315 TATATTAATT
1 TATATTAATT
113857325 AATTTTTAAT
Statistics
Matches: 177, Mismatches: 13, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
89 20 0.11
91 62 0.35
92 2 0.01
94 2 0.01
95 18 0.10
97 22 0.12
99 51 0.29
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (97 bp):
TATATTAATTTAGGCTTCAATTAACTAATTTTAAAGTTTAAACTGTAGTTTAACATACTTTTTTT
TTGTTTAATTTATGCTGTTGTACTTGTACTAT
Found at i:113858374 original size:90 final size:93
Alignment explanation
Indices: 113858206--113858499 Score: 405
Period size: 90 Copynumber: 3.1 Consensus size: 93
113858196 ATTAAAAATT
113858206 AATTAATATAATAGTACAAGTACAGCAGCATAAATTAAACAAAAAAAAAAGTATGTTAAACTACA
1 AATTAATATAATAGTACAAGT--A--AGCATAAATTAAAC-AAAAAAAAAGTATGTTAAACTACA
*
113858271 TTTTAAACTTTAAAGTTAGTTAATTGAAGCCTA
61 GTTTAAACTTTAAAGTTAGTTAATTGAAGCCTA
* * *
113858304 AATTAATATAATAGTACAA-T-AGCATAAATTAAAC-AAAAAAAAGTTTGTTAAGCTACCGTTTA
1 AATTAATATAATAGTACAAGTAAGCATAAATTAAACAAAAAAAAAGTATGTTAAACTACAGTTTA
*
113858366 AAATTTAAAGTTAGTTAATTGAAGCCTA
66 AACTTTAAAGTTAGTTAATTGAAGCCTA
*
113858394 AATTAATATAATAGTACAAGTACAACGGCATAAATTAAACAAAAAAAAATAGTATGTTAAACTAT
1 AATTAATATAATAGTACAAGT--AA--GCATAAATTAAAC-AAAAAAAA-AGTATGTTAAACTAC
*
113858459 AGTTTAAACTTTAAAGTTAATTAATTGAAGCCTA
60 AGTTTAAACTTTAAAGTTAGTTAATTGAAGCCTA
113858493 AATTAAT
1 AATTAAT
113858500 GTACAACAGC
Statistics
Matches: 176, Mismatches: 11, Indels: 17
0.86 0.05 0.08
Matches are distributed among these distances:
90 70 0.40
91 1 0.01
92 14 0.08
94 1 0.01
96 13 0.07
97 1 0.01
98 26 0.15
99 50 0.28
ACGTcount: A:0.50, C:0.09, G:0.10, T:0.31
Consensus pattern (93 bp):
AATTAATATAATAGTACAAGTAAGCATAAATTAAACAAAAAAAAAGTATGTTAAACTACAGTTTA
AACTTTAAAGTTAGTTAATTGAAGCCTA
Found at i:113858724 original size:17 final size:17
Alignment explanation
Indices: 113858702--113858753 Score: 86
Period size: 17 Copynumber: 3.1 Consensus size: 17
113858692 TTTTCTCTAT
*
113858702 TAATATTACGTTATTAC
1 TAATATTACATTATTAC
*
113858719 TAATATTATATTATTAC
1 TAATATTACATTATTAC
113858736 TAATATTACATTATTAC
1 TAATATTACATTATTAC
113858753 T
1 T
113858754 TTGGGAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (17 bp):
TAATATTACATTATTAC
Found at i:113866579 original size:41 final size:42
Alignment explanation
Indices: 113866534--113866836 Score: 257
Period size: 41 Copynumber: 7.4 Consensus size: 42
113866524 GCGTTTTACC
*
113866534 AAAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGCTTTAGTA
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGTA
* * * *
113866575 AAAAACACCGCTAAAAAGCAGAGCAATAGCGGCGCATTTGGT-
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC-TTTAGTA
* *
113866617 -AAAACGCCGTTAAAAACCAAAGCATTAGCGGCGCTTTTAGT-
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC-TTTAGTA
* * * ** * *
113866658 -AAAATGCCACTAAAAACTAGAGCATTAGCTACGCTTTTG-G
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGTA
* * * *
113866698 AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCTCTTTTG-G
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGTA
* * * *
113866739 AAAAATGCCGCTAAAAACCAAAGCATTAGCGGCACTTTTG-A
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGTA
* * * * * *
113866780 TAAAATGCCGCTAAAAACCAAAACACTAGTGGCGCTTT--TA
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGTA
113866820 GAAAAACGCCGCTAAAA
1 -AAAAACGCCGCTAAAA
113866837 GTCATATAAC
Statistics
Matches: 222, Mismatches: 34, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
40 5 0.02
41 195 0.88
42 17 0.08
43 5 0.02
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (42 bp):
AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGTA
Found at i:113866671 original size:82 final size:81
Alignment explanation
Indices: 113866535--113866836 Score: 329
Period size: 82 Copynumber: 3.7 Consensus size: 81
113866525 CGTTTTACCA
* * *
113866535 AAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGC-TTTAGTAAAAAACACCGCTAAAAAGCAGAG
1 AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTAG--AAAAACGCCGCTAAAAA-CAGAG
* *
113866598 CAATAGCGGCGCATTTGGT
63 CATTAGCGGCGCTTTTGGT
* * * *
113866617 AAAACGCCGTTAAAAACCAAAGCATTAGCGGCGCTTTTAGTAAAATGCCACTAAAAACTAGAGCA
1 AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTAGAAAAACGCCGCTAAAAAC-AGAGCA
** *
113866682 TTAGCTACGCTTTTGGA
65 TTAGCGGCGCTTTTGGT
* * * * * *
113866699 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCTCTTTTGGAAAAATGCCGCTAAAAACCAAAGCA
1 AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTAGAAAAACGCCGCTAAAAA-CAGAGCA
* *
113866764 TTAGCGGCACTTTTGAT
65 TTAGCGGCGCTTTTGGT
* * * *
113866781 AAAATGCCGCTAAAAACCAAAACACTAGTGGCGCTTTTAGAAAAACGCCGCTAAAA
1 AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTAGAAAAACGCCGCTAAAA
113866837 GTCATATAAC
Statistics
Matches: 182, Mismatches: 34, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
81 1 0.01
82 160 0.88
83 16 0.09
84 5 0.03
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (81 bp):
AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTAGAAAAACGCCGCTAAAAACAGAGCAT
TAGCGGCGCTTTTGGT
Found at i:113866728 original size:123 final size:122
Alignment explanation
Indices: 113866535--113866836 Score: 358
Period size: 123 Copynumber: 2.5 Consensus size: 122
113866525 CGTTTTACCA
* * * * *
113866535 AAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTAGTAAAAAACACCGCTAAAAAGCAGAGCA
1 AAAATGCCGCTAAAAACAGAGCAATAGCTGCGCTTTTG-GAAAAACGCCGCTAAAAAGCAGAGCA
* * *
113866600 ATAGCGGCGCATTTGGTAAAACGCCGTTAAAAACCAAAGCATTAGCGGCGCTTTT-AGT
65 ATAGCGGCGCATTTGGAAAAACGCCGCTAAAAACCAAAGCATTAGCGGCACTTTTGA-T
* * *
113866658 AAAATGCCACTAAAAACTAGAGCATTAGCTACGCTTTTGGAAAAACGCCGCTAAAAA-CTAGAGC
1 AAAATGCCGCTAAAAAC-AGAGCAATAGCTGCGCTTTTGGAAAAACGCCGCTAAAAAGC-AGAGC
* * * *
113866722 ATTAGCGGCTCTTTTGGAAAAATGCCGCTAAAAACCAAAGCATTAGCGGCACTTTTGAT
64 AATAGCGGCGCATTTGGAAAAACGCCGCTAAAAACCAAAGCATTAGCGGCACTTTTGAT
* * * *
113866781 AAAATGCCGCTAAAAACCAAAACACTAG-TGGCGCTTTTAGAAAAACGCCGCTAAAA
1 AAAATGCCGCTAAAAA-CAGAGCAATAGCT-GCGCTTTTGGAAAAACGCCGCTAAAA
113866837 GTCATATAAC
Statistics
Matches: 153, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
122 2 0.01
123 132 0.86
124 19 0.12
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (122 bp):
AAAATGCCGCTAAAAACAGAGCAATAGCTGCGCTTTTGGAAAAACGCCGCTAAAAAGCAGAGCAA
TAGCGGCGCATTTGGAAAAACGCCGCTAAAAACCAAAGCATTAGCGGCACTTTTGAT
Found at i:113867049 original size:14 final size:14
Alignment explanation
Indices: 113866999--113867043 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 14
113866989 TATCATTATA
*
113866999 GTTTAAGGTTTATG
1 GTTTAAGGTTTAGG
113867013 GTTTAAGATGGTTTAGG
1 GTTT-A-A-GGTTTAGG
113867030 GTTTAAGGTTTAGG
1 GTTTAAGGTTTAGG
113867044 AGTTAACCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 12 0.44
15 2 0.07
16 2 0.07
17 11 0.41
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:113867108 original size:7 final size:7
Alignment explanation
Indices: 113867096--113867207 Score: 61
Period size: 7 Copynumber: 15.7 Consensus size: 7
113867086 GGGATTATGA
113867096 TTTAGGG
1 TTTAGGG
113867103 TTTAGGG
1 TTTAGGG
*
113867110 GTTAGGG
1 TTTAGGG
113867117 -TT-GGAG
1 TTTAGG-G
*
113867123 TTTAAGG
1 TTTAGGG
*
113867130 TGTAAGGG
1 T-TTAGGG
113867138 TTT-GGTG
1 TTTAGG-G
*
113867145 TTAAGGG
1 TTTAGGG
*
113867152 TTAAGGG
1 TTTAGGG
*
113867159 TTTAGTG
1 TTTAGGG
*
113867166 TTTAGTG
1 TTTAGGG
113867173 TTTATGGG
1 TTTA-GGG
*
113867181 -ATAGGGG
1 TTTA-GGG
*
113867188 TTAAGAGG
1 TTTAG-GG
113867196 TTTAGGG
1 TTTAGGG
113867203 TTTAG
1 TTTAG
113867208 ATTAATTAGT
Statistics
Matches: 82, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
5 2 0.02
6 5 0.06
7 58 0.71
8 17 0.21
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (7 bp):
TTTAGGG
Found at i:113873641 original size:14 final size:13
Alignment explanation
Indices: 113873622--113873653 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
113873612 TAAATCAAAC
113873622 AAAAAAAAACACGA
1 AAAAAAAAAC-CGA
113873636 AAAAAAAAACCGA
1 AAAAAAAAACCGA
113873649 AAAAA
1 AAAAA
113873654 TATGGTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.81, C:0.12, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAAAACCGA
Found at i:113887795 original size:17 final size:17
Alignment explanation
Indices: 113887770--113887803 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
113887760 AACGAAAGAG
* *
113887770 AGAAGAAAAAGGAAAAA
1 AGAAAAAAAAAGAAAAA
113887787 AGAAAAAAAAAGAAAAA
1 AGAAAAAAAAAGAAAAA
113887804 GGAAGGCCCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AGAAAAAAAAAGAAAAA
Found at i:113899713 original size:39 final size:40
Alignment explanation
Indices: 113899670--113899754 Score: 95
Period size: 39 Copynumber: 2.1 Consensus size: 40
113899660 CGATTTATTG
113899670 TTTTTAATAATTAAAATA-TATAAA-ATTA-ATTCATATTAT
1 TTTTTAATAATTAAAA-ACTA-AAATATTATATTCATATTAT
* * * *
113899709 TTTTTTATATTTAAAAACTAAAATATTATTTTCATTTTAT
1 TTTTTAATAATTAAAAACTAAAATATTATATTCATATTAT
113899749 TTTTTA
1 TTTTTA
113899755 TATTTAATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
38 4 0.11
39 20 0.53
40 14 0.37
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (40 bp):
TTTTTAATAATTAAAAACTAAAATATTATATTCATATTAT
Found at i:113912705 original size:23 final size:22
Alignment explanation
Indices: 113912671--113912716 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
113912661 TAACCAAACC
113912671 AATTCAACATATTT-TCAAGATA
1 AATTCAACATATTTAT-AAGATA
113912693 AATTCATACATATTTATAAGATA
1 AATTCA-ACATATTTATAAGATA
113912716 A
1 A
113912717 CGTCATCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 15 0.68
24 1 0.05
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (22 bp):
AATTCAACATATTTATAAGATA
Found at i:113912722 original size:23 final size:24
Alignment explanation
Indices: 113912677--113912728 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
113912667 AACCAATTCA
*
113912677 ACATATTTTCAAGATAAATTCAT-
1 ACATATTTTCAAGATAAAGTCATC
*
113912700 ACATATTTAT-AAGATAACGTCATC
1 ACATATTT-TCAAGATAAAGTCATC
113912724 ACATA
1 ACATA
113912729 CCCAAAACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (24 bp):
ACATATTTTCAAGATAAAGTCATC
Found at i:113915060 original size:15 final size:15
Alignment explanation
Indices: 113915027--113915064 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
113915017 AAAAAAGTAC
113915027 AAAAAATAAAATACGA
1 AAAAAATAAAATAC-A
113915043 AAAAAATAAAAATA-A
1 AAAAAAT-AAAATACA
113915058 AAAAAAT
1 AAAAAAT
113915065 TCTGTGGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 7 0.33
17 6 0.29
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (15 bp):
AAAAAATAAAATACA
Found at i:113915061 original size:16 final size:16
Alignment explanation
Indices: 113915027--113915064 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
113915017 AAAAAAGTAC
*
113915027 AAAAAATAAAATACGA
1 AAAAAATAAAATACAA
*
113915043 AAAAAATAAAA-ATAA
1 AAAAAATAAAATACAA
113915058 AAAAAAT
1 AAAAAAT
113915065 TCTGTGGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (16 bp):
AAAAAATAAAATACAA
Found at i:113920692 original size:18 final size:18
Alignment explanation
Indices: 113920665--113920699 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
113920655 TTGATAATTA
*
113920665 TTAAGTATTTTAAGTTAT
1 TTAAGAATTTTAAGTTAT
*
113920683 TTAAGAATTTTATGTTA
1 TTAAGAATTTTAAGTTA
113920700 ACAAGAAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.54
Consensus pattern (18 bp):
TTAAGAATTTTAAGTTAT
Done.