Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 349 of 362
Found at i:115739639 original size:87 final size:88
Alignment explanation
Indices: 115739480--115740257 Score: 817
Period size: 89 Copynumber: 8.9 Consensus size: 88
115739470 AGTAAAAATT
* * * * * * * *
115739480 AAAAACAG-AGTTTGAAAGACAGAATTTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCAC
1 AAAAACAGAAATTAGAAAAACAGAAATTGAAAATACCTCAG--CGTGTCCTGAGGCTCAACTCAC
*
115739544 TTCTCGCAATATGAGTTGATTTTTG
64 CTCTCGCAATATGAGTTGATTTTTG
* * * * * *
115739569 AAAAGCAGAAATT-GAAAAATATAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCT
1 AAAAACAGAAATTAGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
115739633 CTCGCAATATGAGTTGATTTTTTG
66 CTCGCAATATGAGTTGA-TTTTTG
* * * * * * *
115739657 AAAAATATAGATTGGAAAAAACACAAATTGAAAATACCTCAGCGTATCTTGAGGCTCAACTCACC
1 AAAAACAGAAATTAG-AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
115739722 TCTCGCAATATGAGTTGA--TTT-
65 TCTCGCAATATGAGTTGATTTTTG
* * *
115739743 AAAAACAGACATT--AAGAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCT
1 AAAAACAGAAATTAGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
115739806 CTCGCAATATGAGTTGATTTTTG
66 CTCGCAATATGAGTTGATTTTTG
* * * *
115739829 AAAATA-TG-AATTAAAAAAACAGAAATTGAATATACCTCAGCATGTGAGCC-GAGGCTCAACTC
1 AAAA-ACAGAAATTAGAAAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTC
* *
115739891 ACTTCTCACAATATGAGTTGATTTTTTTG
62 ACCTCTCGCAATATGAGTTGA--TTTTTG
* * * *
115739920 AAAAATATAGATTGGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
1 AAAAACAGAAATTAGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
*
115739985 CTTGC-ATATGAGTTGA--TTT-
66 CTCGCAATATGAGTTGATTTTTG
* * *
115740004 AAAAACAGACATT--AAGAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
1 AAAAACAGAAATTAGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
115740067 CTCGCAATATGAGTTGATTTTTG
66 CTCGCAATATGAGTTGATTTTTG
* * **
115740090 -AAAACATG-AATTAAAAAAACAGAAATTGAAGATACCTCAGCATGTGAGAC-GAGGCTCAACTC
1 AAAAACA-GAAATTAGAAAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTC
*
115740152 ACTTCTCGCAATATGAGTTGATTTTTG
62 ACCTCTCGCAATATGAGTTGATTTTTG
* ** * * * *
115740179 -AAAACAG-AATT-GAAAAATAGAAATTGAAGTTACCTCAGAGTGCCCTGAGGCTCAACTTACTT
1 AAAAACAGAAATTAGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
115740241 CTCGCAATATGAGTTGA
66 CTCGCAATATGAGTTGA
115740258 CTTCTTGTTT
Statistics
Matches: 592, Mismatches: 68, Indels: 62
0.82 0.09 0.09
Matches are distributed among these distances:
82 52 0.09
83 73 0.12
84 11 0.02
85 56 0.09
86 16 0.03
87 115 0.19
88 20 0.03
89 122 0.21
90 88 0.15
91 10 0.02
92 29 0.05
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (88 bp):
AAAAACAGAAATTAGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATTTTTG
Found at i:115740073 original size:261 final size:260
Alignment explanation
Indices: 115739530--115740257 Score: 1105
Period size: 261 Copynumber: 2.8 Consensus size: 260
115739520 TATGTGACCC
* * * *
115739530 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAGCA-GAAATT-GAAAAATATAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-CATG-AATTAAAAAAACAGAA
** *
115739593 ATTGAAATTACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
64 ATTGAAA-TACCTCAGCATGTGAGCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
* * *
115739656 GAAAAATATAGATTGGAAAAAACACAAATTGAAAATACCTCAGCGTATCTTGAGGCTCAACTCAC
128 GAAAAATATAGATTGG-AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
*
115739721 CTCTCGCAATATGAGTTGATTTAAAAACAGACATTAAGAACAGAAATTGAAAATACCTCAGCGTG
192 CTCTCGCAATATGAGTTGATTTAAAAACAGACATTAAGAACAAAAATTGAAAATACCTCAGCGTG
115739786 TCCT
257 TCCT
* *
115739790 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATATGAATTAAAAAAACAGAAAT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAAAAACAGAAAT
*
115739855 TGAATATACCTCAGCATGTGAGCCGAGGCTCAACTCACTTCTCACAATATGAGTTGATTTTTTTG
66 TGAA-ATACCTCAGCATGTGAGCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTTG
115739920 AAAAATATAGATTGGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
129 AAAAATATAGATTGGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
*
115739985 CTTGC-ATATGAGTTGATTTAAAAACAGACATTAAGAACAAAAATTGAAAATACCTCAGCGTGTC
194 CTCGCAATATGAGTTGATTTAAAAACAGACATTAAGAACAAAAATTGAAAATACCTCAGCGTGTC
115740049 CT
259 CT
115740051 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAAAAACAGAAAT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAAAAACAGAAAT
*
115740116 TGAAGATACCTCAGCATGTGAGACGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTG-
66 TGAA-ATACCTCAGCATGTGAGCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGA
* * * ** * * * *
115740179 AAAACAGA-ATT-GAAAAATAGAAATTGAAGTTACCTCAGAGTGCCCTGAGGCTCAACTTACTTC
130 AAAATATAGATTGGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
115740242 TCGCAATATGAGTTGA
195 TCGCAATATGAGTTGA
115740258 CTTCTTGTTT
Statistics
Matches: 431, Mismatches: 30, Indels: 17
0.90 0.06 0.04
Matches are distributed among these distances:
256 48 0.11
257 14 0.03
258 6 0.01
259 11 0.03
260 65 0.15
261 178 0.41
262 87 0.20
263 22 0.05
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (260 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAAAAACAGAAAT
TGAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAA
AAATATAGATTGGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTAAAAACAGACATTAAGAACAAAAATTGAAAATACCTCAGCGTGTCCT
Found at i:115742635 original size:40 final size:40
Alignment explanation
Indices: 115742591--115742777 Score: 311
Period size: 40 Copynumber: 4.7 Consensus size: 40
115742581 CCAACCCAAT
* *
115742591 TGCCTTCGGGATTTAGCCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
115742631 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
115742671 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCATGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
* *
115742711 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
115742751 TACCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGATATAA
115742778 TCCTCAATTG
Statistics
Matches: 136, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
Found at i:115751659 original size:4 final size:4
Alignment explanation
Indices: 115751625--115751649 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
115751615 ACATGTATGC
115751625 AATG AATG AATG AATG AATG AATG A
1 AATG AATG AATG AATG AATG AATG A
115751650 CAAATGAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
AATG
Found at i:115751670 original size:22 final size:22
Alignment explanation
Indices: 115751629--115751683 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
115751619 GTATGCAATG
* *
115751629 AATGAATGAATGAATGAATGACA
1 AATGAATG-TTGAATAAATGACA
**
115751652 AATGAATGTTGAATAAATGGTA
1 AATGAATGTTGAATAAATGACA
115751674 AATGAATGTT
1 AATGAATGTT
115751684 AATCGTGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.29
Consensus pattern (22 bp):
AATGAATGTTGAATAAATGACA
Found at i:115755984 original size:24 final size:22
Alignment explanation
Indices: 115755939--115756004 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
115755929 TAGATAATGG
* *
115755939 TATTAGAA-ATATGCAT-ACAA
1 TATTAAAATATATACATAACAA
115755959 TATTACAAAATATATATC-TAACAA
1 TATT--AAAATATATA-CATAACAA
115755983 TATTAAAATATATACATAACAA
1 TATTAAAATATATACATAACAA
115756005 CAAAAGTATG
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 4 0.11
21 1 0.03
22 19 0.50
23 5 0.13
24 9 0.24
ACGTcount: A:0.55, C:0.11, G:0.03, T:0.32
Consensus pattern (22 bp):
TATTAAAATATATACATAACAA
Found at i:115755993 original size:22 final size:23
Alignment explanation
Indices: 115755947--115756004 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
115755937 GGTATTAGAA
*
115755947 ATATGCAT-ACAATATTACAAAAT
1 ATATACATAACAATATTA-AAAAT
115755970 ATATATC-TAACAATATT-AAAAT
1 ATATA-CATAACAATATTAAAAAT
115755992 ATATACATAACAA
1 ATATACATAACAA
115756005 CAAAAGTATG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 1 0.03
22 16 0.52
23 5 0.16
24 9 0.29
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.31
Consensus pattern (23 bp):
ATATACATAACAATATTAAAAAT
Found at i:115756735 original size:5 final size:5
Alignment explanation
Indices: 115756720--115756756 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
115756710 AGCCCAAATC
*
115756720 AGAAA AAAAA AGAAA AGAAA AGAAA AGAAA AGAAA AG
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AG
115756757 GGAGAGAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:115757894 original size:20 final size:20
Alignment explanation
Indices: 115757865--115757938 Score: 130
Period size: 20 Copynumber: 3.7 Consensus size: 20
115757855 AGTGGCACAC
115757865 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAT
*
115757885 GCCTGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAT
*
115757905 GCCCGTGTGGCCTGGAACAT
1 GCCCGTGTGGCCTGGGACAT
115757925 GCCCGTGTGGCCTG
1 GCCCGTGTGGCCTG
115757939 CCCATGGGCA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.09, C:0.30, G:0.39, T:0.22
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGGACAT
Found at i:115758804 original size:53 final size:53
Alignment explanation
Indices: 115758747--115758882 Score: 222
Period size: 53 Copynumber: 2.6 Consensus size: 53
115758737 ATATCTCAGA
*
115758747 TATGGTCTTATACGGAATCACATTATCACATTGTACCGATGCCATAGCCCAGC
1 TATGGTCTTATACGGAATCACATTATCACATTGTACCGATGCCATAGCCCAAC
*
115758800 TATGGTCTTATACGGGATCACATTATCACATTGTACCGATGCCATAGCCCAAC
1 TATGGTCTTATACGGAATCACATTATCACATTGTACCGATGCCATAGCCCAAC
*
115758853 TATGGTCTTATACAGAAGT-ACA-TATCACAT
1 TATGGTCTTATACGGAA-TCACATTATCACAT
115758883 CTTTTCCGTC
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
52 8 0.10
53 69 0.88
54 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (53 bp):
TATGGTCTTATACGGAATCACATTATCACATTGTACCGATGCCATAGCCCAAC
Found at i:115760563 original size:14 final size:14
Alignment explanation
Indices: 115760544--115760581 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
115760534 GATTGGCTGT
115760544 AAAATGTTTTCTGG
1 AAAATGTTTTCTGG
*
115760558 AAAATGATTTCTGG
1 AAAATGTTTTCTGG
115760572 AAAATGTTTT
1 AAAATGTTTT
115760582 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.42
Consensus pattern (14 bp):
AAAATGTTTTCTGG
Found at i:115760590 original size:20 final size:20
Alignment explanation
Indices: 115760565--115760604 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
115760555 TGGAAAATGA
*
115760565 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
115760585 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
115760605 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:115760596 original size:34 final size:35
Alignment explanation
Indices: 115760550--115760616 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
115760540 CTGTAAAATG
*
115760550 TTTTCTGGAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCTGGAAAATGATTTACTGGAAAATATTTTAC
*
115760584 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCTGGAAAATGATTTACTGGAAAATATTTT
115760617 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.46
Consensus pattern (35 bp):
TTTTCTGGAAAATGATTTACTGGAAAATATTTTAC
Found at i:115760719 original size:20 final size:20
Alignment explanation
Indices: 115760691--115760767 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
115760681 TCCGGAAAAG
115760691 TTATTTTTACATATATTAAA
1 TTATTTTTACATATATTAAA
* *
115760711 TTGTTTTTACATATATATTAA
1 TTATTTTTACATATAT-TAAA
* *
115760732 TAAATTTTT--ATATTTTAAA
1 T-TATTTTTACATATATTAAA
115760751 TTATTTTTACATATATT
1 TTATTTTTACATATATT
115760768 GCAATGATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
18 6 0.13
19 4 0.09
20 26 0.58
21 4 0.09
22 5 0.11
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (20 bp):
TTATTTTTACATATATTAAA
Found at i:115763091 original size:21 final size:22
Alignment explanation
Indices: 115763053--115763098 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
115763043 GAGGATGTGG
115763053 AAGAAGATTTGCTTAGAAGAGA
1 AAGAAGATTTGCTTAGAAGAGA
*
115763075 AAGAAGA-TTGTTTAGAAGAGA
1 AAGAAGATTTGCTTAGAAGAGA
115763096 AAG
1 AAG
115763099 GAGAAAGGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.48, C:0.02, G:0.28, T:0.22
Consensus pattern (22 bp):
AAGAAGATTTGCTTAGAAGAGA
Found at i:115767399 original size:30 final size:31
Alignment explanation
Indices: 115767342--115767422 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
115767332 ACCTATTACC
* *
115767342 AAGTTTTCATTTAAGT-AGTGAATTATTC-AA
1 AAGTTTT-ATTTAAGTCATTGAACTATTCGAA
115767372 AAGTTTTATTTAAGTCATTGAACTATTCGAA
1 AAGTTTTATTTAAGTCATTGAACTATTCGAA
***
115767403 TTTTTTTATTTAAGTCATTG
1 AAGTTTTATTTAAGTCATTG
115767423 GGCTGTTATG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
29 8 0.18
30 17 0.39
31 19 0.43
ACGTcount: A:0.32, C:0.07, G:0.12, T:0.48
Consensus pattern (31 bp):
AAGTTTTATTTAAGTCATTGAACTATTCGAA
Found at i:115768139 original size:31 final size:31
Alignment explanation
Indices: 115768101--115768176 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 31
115768091 AATCTTTTGC
** *
115768101 AAAAAAGTTTAATTTGACCATCAACCTTTAA
1 AAAAAAGTCGAATTTAACCATCAACCTTTAA
* *
115768132 AAAAAAGTCGAATTTAACCATCAATCTTTCA
1 AAAAAAGTCGAATTTAACCATCAACCTTTAA
* *
115768163 AAAAGAGTCAAATT
1 AAAAAAGTCGAATT
115768177 GTTGTTTTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.47, C:0.16, G:0.08, T:0.29
Consensus pattern (31 bp):
AAAAAAGTCGAATTTAACCATCAACCTTTAA
Found at i:115769467 original size:3 final size:3
Alignment explanation
Indices: 115769459--115769634 Score: 80
Period size: 3 Copynumber: 58.3 Consensus size: 3
115769449 TAGTACAATG
* * * * * *
115769459 ATA ATA ATA AGA TTA ATA ATA A-A ATA ATA AAA ATA ACA AT- ATG TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
115769505 CTA ATA ATA ATAA ATAA ATAA ATA ATG GTA ATA A-A TATA TATA A-A
1 ATA ATA ATA AT-A AT-A AT-A ATA ATA ATA ATA ATA -ATA -ATA ATA
* * *
115769550 ATA ATA GTA ACA GTA ATA A-A ATA A-A TATA AT- ATA ATA A-A TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA -ATA
* * *
115769593 ATA ATA AGTA ATA ATA TATA ATA ATA ACA ATA TTA AAA ATA A
1 ATA ATA A-TA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA A
115769635 CACTCTCCCC
Statistics
Matches: 131, Mismatches: 28, Indels: 28
0.70 0.15 0.15
Matches are distributed among these distances:
2 13 0.10
3 94 0.72
4 24 0.18
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:115769499 original size:20 final size:20
Alignment explanation
Indices: 115769461--115769499 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
115769451 GTACAATGAT
* * *
115769461 AATAATAAGATTAATAATAA
1 AATAATAAAAATAACAATAA
115769481 AATAATAAAAATAACAATA
1 AATAATAAAAATAACAATA
115769500 TGTTACTAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
AATAATAAAAATAACAATAA
Found at i:115769549 original size:31 final size:30
Alignment explanation
Indices: 115769514--115769612 Score: 76
Period size: 32 Copynumber: 3.0 Consensus size: 30
115769504 ACTAATAATA
115769514 ATAAATAAATAAATAATGGTAATAAATATAT
1 ATAAATAAATAAATAAT-GTAATAAATATAT
**
115769545 ATAAAATAATAGTAACAGTAATAAAATAAATATA-
1 AT-AAATAA-A-TAA-A-TAATGTAATAAATATAT
115769579 ATATAATAAATATAATAATAAGTAAT-AATATAT
1 ATA-AATAAATA-AATAAT--GTAATAAATATAT
115769612 A
1 A
115769613 ATAATAACAA
Statistics
Matches: 54, Mismatches: 4, Indels: 18
0.71 0.05 0.24
Matches are distributed among these distances:
31 6 0.11
32 15 0.28
33 8 0.15
34 10 0.19
35 11 0.20
36 4 0.07
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (30 bp):
ATAAATAAATAAATAATGTAATAAATATAT
Found at i:115769570 original size:20 final size:21
Alignment explanation
Indices: 115769545--115769621 Score: 76
Period size: 20 Copynumber: 3.9 Consensus size: 21
115769535 ATAAATATAT
*
115769545 ATAAA-ATAATAGTAACAGTA
1 ATAAATATAATAATAACAGTA
*
115769565 ATAAA-ATAA-ATATAATA-TA
1 ATAAATATAATA-ATAACAGTA
115769584 ATAAATATAATAAT-A-AGTA
1 ATAAATATAATAATAACAGTA
115769603 ATAATATATAATAATAACA
1 ATAA-ATATAATAATAACA
115769622 ATATTAAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
18 1 0.02
19 15 0.31
20 29 0.60
21 2 0.04
22 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.30
Consensus pattern (21 bp):
ATAAATATAATAATAACAGTA
Found at i:115769853 original size:19 final size:21
Alignment explanation
Indices: 115769808--115769853 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
115769798 ACTTTCGTAT
*
115769808 ATAAAAAAATATAAAATTGAA
1 ATAAAAAAATATAAAATTAAA
*
115769829 A-GAAAAAA-ATAAAA-TAAA
1 ATAAAAAAATATAAAATTAAA
115769847 ATAAAAA
1 ATAAAAA
115769854 CTTAAAACGA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
18 4 0.19
19 10 0.48
20 6 0.29
21 1 0.05
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (21 bp):
ATAAAAAAATATAAAATTAAA
Found at i:115770409 original size:23 final size:25
Alignment explanation
Indices: 115770357--115770410 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
115770347 AAATTAATAT
*
115770357 TTTAATTCATATTTTTGTTAAAAGA
1 TTTAATTCAAATTTTTGTTAAAAGA
* *
115770382 -ATAATTTAAATTTTT-TTAAAA-A
1 TTTAATTCAAATTTTTGTTAAAAGA
115770404 TTTAATT
1 TTTAATT
115770411 ATCATATTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
22 1 0.04
23 11 0.46
24 12 0.50
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (25 bp):
TTTAATTCAAATTTTTGTTAAAAGA
Found at i:115771316 original size:25 final size:24
Alignment explanation
Indices: 115771283--115771331 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
115771273 TATTAAGTTG
115771283 CTTTTA-TTTTAAAAAATAAATTAT
1 CTTTTATTTTTAAAAAAT-AATTAT
*
115771307 CTTTTAATTTTTATAAAATAATTAT
1 CTTTT-ATTTTTAAAAAATAATTAT
115771332 ACAAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 7 0.32
26 10 0.45
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
CTTTTATTTTTAAAAAATAATTAT
Found at i:115777957 original size:27 final size:25
Alignment explanation
Indices: 115777908--115777957 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
115777898 TTAATCATAA
*
115777908 ATTTTTAATAAAAATAATTAATTTT
1 ATTTTTAATAAAAATAATAAATTTT
*
115777933 ATTTTTAATATAACATATATAAATT
1 ATTTTTAATA-AAAATA-ATAAATT
115777958 AATTTACCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 5 0.24
27 6 0.29
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
ATTTTTAATAAAAATAATAAATTTT
Found at i:115777962 original size:26 final size:25
Alignment explanation
Indices: 115777907--115777962 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
115777897 ATTAATCATA
*
115777907 AATTTTTAATAAAAATAATTAATTT
1 AATTTTTAATAAAAATAATTAAATT
* *
115777932 TATTTTTAATATAACAT-ATATAAATT
1 AATTTTTAATA-AAAATAAT-TAAATT
115777958 AATTT
1 AATTT
115777963 ACCTATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
AATTTTTAATAAAAATAATTAAATT
Found at i:115778841 original size:31 final size:31
Alignment explanation
Indices: 115778806--115778871 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
115778796 TAAAATTGTT
*
115778806 ATTGAATTATTCAAAAATTTTCATTTAAGTC
1 ATTGAACTATTCAAAAATTTTCATTTAAGTC
* ** * *
115778837 ATTGAACTATTCGAATGTTTTTATTTAAGTT
1 ATTGAACTATTCAAAAATTTTCATTTAAGTC
115778868 ATTG
1 ATTG
115778872 GATCAGTATC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.48
Consensus pattern (31 bp):
ATTGAACTATTCAAAAATTTTCATTTAAGTC
Found at i:115779412 original size:27 final size:28
Alignment explanation
Indices: 115779359--115779412 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 28
115779349 CACTCGTTCA
115779359 TATTTAATATATATTCTCTAATCCAATC
1 TATTTAATATATATTCTCTAATCCAATC
*
115779387 TATTTAATATAT-TTCTCTAATTCAAT
1 TATTTAATATATATTCTCTAATCCAAT
115779413 TTAGTTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (28 bp):
TATTTAATATATATTCTCTAATCCAATC
Found at i:115786075 original size:12 final size:12
Alignment explanation
Indices: 115786058--115786092 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
115786048 GCCATTCATG
115786058 TACATATATACA
1 TACATATATACA
*
115786070 TACATAAATACA
1 TACATATATACA
*
115786082 TACATGTATAC
1 TACATATATAC
115786093 TCCTAGTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.49, C:0.17, G:0.03, T:0.31
Consensus pattern (12 bp):
TACATATATACA
Found at i:115797175 original size:31 final size:31
Alignment explanation
Indices: 115797138--115797203 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
115797128 GTTATTAAAT
* *
115797138 TATTT-AAAATTTTTCATTTAAGTCATTGAAC
1 TATTTAAAAAATTTT-ATTCAAGTCATTGAAC
115797169 TATTTAAAAAATTTTATTCAAGTCATTGAAC
1 TATTTAAAAAATTTTATTCAAGTCATTGAAC
115797200 TATT
1 TATT
115797204 AAACCTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 24 0.75
32 8 0.25
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (31 bp):
TATTTAAAAAATTTTATTCAAGTCATTGAAC
Found at i:115798436 original size:15 final size:16
Alignment explanation
Indices: 115798416--115798448 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
115798406 TATATATTTT
115798416 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
115798431 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
115798448 T
1 T
115798449 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:115798521 original size:21 final size:21
Alignment explanation
Indices: 115798495--115798553 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
115798485 GTTTTAAGAA
115798495 TTGTTTTAATATTATTTTTAT
1 TTGTTTTAATATTATTTTTAT
*
115798516 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATA-TTATTTTTAT
*
115798538 GT-TTTTAA-ATATATTT
1 TTGTTTTAATAT-TATTT
115798554 GATTTATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 1 0.03
20 5 0.15
21 17 0.52
22 10 0.30
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (21 bp):
TTGTTTTAATATTATTTTTAT
Found at i:115798528 original size:12 final size:12
Alignment explanation
Indices: 115798483--115798534 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 12
115798473 AATTTGTGTA
* *
115798483 TTGTTTTAAGAA
1 TTGTTTTAATAT
115798495 TTGTTTTAATA-
1 TTGTTTTAATAT
*
115798506 TTATTTT--TAT
1 TTGTTTTAATAT
115798516 TTGTTTTAATAT
1 TTGTTTTAATAT
115798528 TTGTTTT
1 TTGTTTT
115798535 TATGTTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 6 0.18
11 6 0.18
12 20 0.59
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (12 bp):
TTGTTTTAATAT
Found at i:115798584 original size:25 final size:26
Alignment explanation
Indices: 115798524--115798572 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
115798514 ATTTGTTTTA
*
115798524 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
115798548 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
115798573 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:115800000 original size:17 final size:17
Alignment explanation
Indices: 115799980--115800027 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
115799970 TCCTTTTTCT
115799980 TTCTTTCTTTCTTTCCC
1 TTCTTTCTTTCTTTCCC
* * * *
115799997 TTCTCTGTTTCGTCCCC
1 TTCTTTCTTTCTTTCCC
115800014 TTCTTTCTTTCTTT
1 TTCTTTCTTTCTTT
115800028 TCTATTCTTT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.00, C:0.33, G:0.04, T:0.62
Consensus pattern (17 bp):
TTCTTTCTTTCTTTCCC
Found at i:115800095 original size:5 final size:5
Alignment explanation
Indices: 115800085--115800115 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
115800075 TTATTATACG
*
115800085 AATAT AATAT AATAT AATAT TATAT AATAT A
1 AATAT AATAT AATAT AATAT AATAT AATAT A
115800116 TATTTATACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
AATAT
Found at i:115800109 original size:15 final size:15
Alignment explanation
Indices: 115800085--115800123 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
115800075 TTATTATACG
*
115800085 AATATAATATAATAT
1 AATATTATATAATAT
115800100 AATATTATATAATAT
1 AATATTATATAATAT
115800115 -ATATT-TATA
1 AATATTATATA
115800124 CTTAAATACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 4 0.17
14 5 0.22
15 14 0.61
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATTATATAATAT
Found at i:115802017 original size:31 final size:29
Alignment explanation
Indices: 115801982--115802053 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
115801972 ATCCCAAAAC
*
115801982 TATACATGAAATATGGTTTGATGTATAATGG
1 TATACATGAAATATGATTT--TGTATAATGG
* * **
115802013 TATACATGAATTTTGATTTTGTATAATTT
1 TATACATGAAATATGATTTTGTATAATGG
115802042 TATACATGAAAT
1 TATACATGAAAT
115802054 TTTGATTTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 19 0.54
31 16 0.46
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.44
Consensus pattern (29 bp):
TATACATGAAATATGATTTTGTATAATGG
Found at i:115802045 original size:29 final size:30
Alignment explanation
Indices: 115802003--115802061 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
115801993 TATGGTTTGA
115802003 TGTATAATGGTATACATG-AATTTTGATTT
1 TGTATAATGGTATACATGAAATTTTGATTT
**
115802032 TGTATAATTTTATACATGAAATTTTGATTT
1 TGTATAATGGTATACATGAAATTTTGATTT
115802062 GATCAAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.32, C:0.03, G:0.14, T:0.51
Consensus pattern (30 bp):
TGTATAATGGTATACATGAAATTTTGATTT
Found at i:115802762 original size:6 final size:7
Alignment explanation
Indices: 115802736--115802761 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
115802726 TATGAAAGCA
115802736 AAAAAAT
1 AAAAAAT
115802743 AAAAAAT
1 AAAAAAT
115802750 AAAAAAT
1 AAAAAAT
115802757 AAAAA
1 AAAAA
115802762 TGAGAGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:115807767 original size:20 final size:20
Alignment explanation
Indices: 115807742--115807781 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
115807732 CATCAGATGA
*
115807742 AAAACAGCCATGGAAGGGGG
1 AAAACAGCAATGGAAGGGGG
115807762 AAAACAGCAATGGAAGGGGG
1 AAAACAGCAATGGAAGGGGG
115807782 TTCAAGCTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.40, T:0.05
Consensus pattern (20 bp):
AAAACAGCAATGGAAGGGGG
Found at i:115809754 original size:47 final size:46
Alignment explanation
Indices: 115809600--115809818 Score: 258
Period size: 46 Copynumber: 4.7 Consensus size: 46
115809590 ATGAAATTTG
* *
115809600 TAAGACCATGGTTGAAAGATACCATGACAACGTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGACAACATGACATGAAATGAA
* *
115809646 TAAGACCATGGTTGAAAGATACCATGACAACTTGACATGAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGACAACATGACATGAAATGAA
* * **
115809692 TAAGACCATGGTTGAAAGATATCATGGCAACATGACGGGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGACAACATGACATG-AAATGAA
* * * ** * *
115809739 TAAGACAATGGTTGAAAGATACTATGGCAACATGACAAAAAACGAG
1 TAAGACCATGGTTGAAAGATACCATGACAACATGACATGAAATGAA
* * * *
115809785 TAAAACCATAGTTGAAAGATACTATGACATCATG
1 TAAGACCATGGTTGAAAGATACCATGACAACATG
115809819 TCGAAGATAA
Statistics
Matches: 150, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
46 111 0.74
47 39 0.26
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGACAACATGACATGAAATGAA
Found at i:115809775 original size:93 final size:92
Alignment explanation
Indices: 115809590--115809818 Score: 278
Period size: 93 Copynumber: 2.5 Consensus size: 92
115809580 GCTCTCTAAT
** * * * *
115809590 ATGAAATTTGTAAGACCATGGTTGAAAGATACCATGACAACGTGATATGAAATGAATAAGACCAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGACAACATGACAGGAAATGAATAAGACAAT
*
115809655 GGTTGAAAGATACCATGACAACTTGAC
66 GGTTGAAAGATACCATGACAACATGAC
* * *
115809682 ATGAAATGAGTAAGACCATGGTTGAAAGATATCATGGCAACATGACGGGAAAATGAATAAGACAA
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGACAACATGACAGG-AAATGAATAAGACAA
* *
115809747 TGGTTGAAAGATACTATGGCAACATGAC
65 TGGTTGAAAGATACCATGACAACATGAC
** * * * * *
115809775 AAAAAACGAGTAAAACCATAGTTGAAAGATACTATGACATCATG
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGACAACATG
115809819 TCGAAGATAA
Statistics
Matches: 115, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
92 41 0.36
93 74 0.64
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.22
Consensus pattern (92 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGACAACATGACAGGAAATGAATAAGACAAT
GGTTGAAAGATACCATGACAACATGAC
Found at i:115811004 original size:8 final size:8
Alignment explanation
Indices: 115810991--115811016 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
115810981 TGAGGCGATT
115810991 ATTTGAAA
1 ATTTGAAA
115810999 ATTTGAAA
1 ATTTGAAA
115811007 ATTTGAAA
1 ATTTGAAA
115811015 AT
1 AT
115811017 GGAATTTCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (8 bp):
ATTTGAAA
Found at i:115811861 original size:3 final size:3
Alignment explanation
Indices: 115811847--115812243 Score: 113
Period size: 3 Copynumber: 132.3 Consensus size: 3
115811837 AAACATACAC
* * * * **
115811847 TAA TAT TAA TAA TAA TAA TAA TAG TAA TAA TATG TAT TAAA TGG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TAA
* * * * * * *
115811894 -AA GAA TAA TAG TAA CAA TAA -AT TAA -AA AAA TGA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * ** *
115811939 AAA TAA -AA TAA TAG CGA TAA TAA TAA TAA TAA TAAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
** * *
115811984 TAA TACA TTAA TAA TAA T-A TGT TAA TAA CAA TAA -AT TAA TGAA TTAA
1 TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA -TAA
* * * * * * *
115812031 TAA CAA -AA CAG TAA GTAAA TAA -ACA CAA AAA TAA GATA TAA TTA TAA
1 TAA TAA TAA TAA TAA -T-AA TAA TA-A TAA TAA TAA TA-A TAA TAA TAA
* * * *
115812078 TAG TAA TAT TAA CAA -AA TAA TAA TAA TAA TAA TAA TAA T-A TAT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * ** *
115812124 TAA -AA -AA TAA TAA TAA -AA GGAA TAA AAA CAA TGT TAA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * ** * *
115812167 GAA TAT TAA TAA TGG TAA CAA TAA CAA TAA T-A TAAA TAA TAA TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A
* * * *
115812213 TACA TGA GAA AAA AAA T-A TAA TAA TAA TAA T
1 TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA T
115812244 GATAGAAGTA
Statistics
Matches: 282, Mismatches: 84, Indels: 56
0.67 0.20 0.13
Matches are distributed among these distances:
2 27 0.10
3 223 0.79
4 27 0.10
5 5 0.02
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:115811997 original size:14 final size:14
Alignment explanation
Indices: 115811955--115812023 Score: 72
Period size: 14 Copynumber: 5.1 Consensus size: 14
115811945 AATAATAGCG
115811955 ATAATAATA-A-TA
1 ATAATAATATATTA
*
115811967 ATAATAA-ATAGTA
1 ATAATAATATATTA
*
115811980 ATAATAATACATTA
1 ATAATAATATATTA
*
115811994 ATAATAATATGTTA
1 ATAATAATATATTA
* *
115812008 ATAACAATAAATTA
1 ATAATAATATATTA
115812022 AT
1 AT
115812024 GAATTAATAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
11 1 0.02
12 8 0.17
13 9 0.19
14 29 0.62
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (14 bp):
ATAATAATATATTA
Found at i:115818412 original size:19 final size:20
Alignment explanation
Indices: 115818370--115818412 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
115818360 AAATGCACAT
** *
115818370 TTTTATTAATTTTTTTATTT
1 TTTTATTAATTTTTAAATTA
115818390 TTTTA-TAATTTTTAAATTA
1 TTTTATTAATTTTTAAATTA
115818409 TTTT
1 TTTT
115818413 GATTTTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTATTAATTTTTAAATTA
Found at i:115818458 original size:19 final size:18
Alignment explanation
Indices: 115818407--115818459 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 18
115818397 ATTTTTAAAT
115818407 TATTTTG-ATTTTTTT-A
1 TATTTTGAATTTTTTTAA
*
115818423 TATTTT--ATTTTTATAA
1 TATTTTGAATTTTTTTAA
115818439 TATTTTAGAATTTTTTTAA
1 TATTTT-GAATTTTTTTAA
115818458 TA
1 TA
115818460 ACTACAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 7 0.23
16 13 0.42
19 11 0.35
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (18 bp):
TATTTTGAATTTTTTTAA
Found at i:115818917 original size:35 final size:35
Alignment explanation
Indices: 115818859--115818953 Score: 95
Period size: 35 Copynumber: 2.7 Consensus size: 35
115818849 ATAAATTTAG
* **
115818859 TATAAATACAATTTAATTTATATTTT-ATTATTTGAT
1 TATAAATATAATTTAA-AAATATTTTGA-TATTTGAT
* *
115818895 T-TAAATATAATTTGTAAAATATTTTGATATTTTAT
1 TATAAATATAATTT-AAAAATATTTTGATATTTGAT
*
115818930 TATGAATATAATTTAAAAATATTT
1 TATAAATATAATTTAAAAATATTT
115818954 AAATTTTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
35 35 0.71
36 14 0.29
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (35 bp):
TATAAATATAATTTAAAAATATTTTGATATTTGAT
Found at i:115819199 original size:21 final size:21
Alignment explanation
Indices: 115819150--115819209 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
115819140 CATTATTTCT
*
115819150 AATCTCACCGCTATAGTATCC
1 AATCTCATCGCTATAGTATCC
*
115819171 AATCTCATTGCTATAGTATCC
1 AATCTCATCGCTATAGTATCC
* *
115819192 AATCTCATCACTACAGTA
1 AATCTCATCGCTATAGTA
115819210 ATTAATCTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (21 bp):
AATCTCATCGCTATAGTATCC
Found at i:115820762 original size:55 final size:56
Alignment explanation
Indices: 115820676--115820788 Score: 192
Period size: 57 Copynumber: 2.0 Consensus size: 56
115820666 AAGAAACAAC
115820676 TAGCTTAATATAAAGAATTTAAATAACA-TTTTTTTTATAATTTATGTAATTTATT
1 TAGCTTAATATAAAGAATTTAAATAACATTTTTTTTTATAATTTATGTAATTTATT
* *
115820731 TAGCTTAATATTAAGAATTTAAATAATATTTTTTTTTTATAATTTATGTAATTTATT
1 TAGCTTAATATAAAGAATTTAAATAACA-TTTTTTTTTATAATTTATGTAATTTATT
115820788 T
1 T
115820789 GGTGCTTGGC
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
55 26 0.48
57 28 0.52
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (56 bp):
TAGCTTAATATAAAGAATTTAAATAACATTTTTTTTTATAATTTATGTAATTTATT
Found at i:115822117 original size:23 final size:23
Alignment explanation
Indices: 115822091--115822136 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
115822081 TCATTGCCAC
115822091 AAAATTTTAAAAAATATATTTTT
1 AAAATTTTAAAAAATATATTTTT
**
115822114 AAAATTTTAAATTATATATTTTT
1 AAAATTTTAAAAAATATATTTTT
115822137 TATTTACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AAAATTTTAAAAAATATATTTTT
Found at i:115823382 original size:9 final size:9
Alignment explanation
Indices: 115823370--115823456 Score: 81
Period size: 9 Copynumber: 9.6 Consensus size: 9
115823360 TTTTTTTATT
115823370 TTTTTATAA
1 TTTTTATAA
115823379 TTTTTATAA
1 TTTTTATAA
115823388 TTTTTATAA
1 TTTTTATAA
115823397 -TTTT-TAA
1 TTTTTATAA
*
115823404 TTTTTATGA
1 TTTTTATAA
*
115823413 TATTTTAGAA
1 T-TTTTATAA
115823423 TTTTT-TAA
1 TTTTTATAA
* *
115823431 TAATTATAAACA
1 T--TTTTATA-A
115823443 TTTTTATAA
1 TTTTTATAA
115823452 TTTTT
1 TTTTT
115823457 TTTTAGTTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
7 3 0.05
8 11 0.17
9 31 0.49
10 15 0.24
11 1 0.02
12 2 0.03
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:115823417 original size:18 final size:18
Alignment explanation
Indices: 115823349--115823427 Score: 72
Period size: 18 Copynumber: 4.3 Consensus size: 18
115823339 TTAAATGCAC
* * *
115823349 ATTTTTATTTATTTTTTT
1 ATTTTTATATATTTTATA
*
115823367 ATTTTTTTATAATTTTTATA
1 ATTTTTATAT-A-TTTTATA
115823387 ATTTTTATA-ATTTT-TA
1 ATTTTTATATATTTTATA
*
115823403 ATTTTTATGATATTTTAGA
1 ATTTTTAT-ATATTTTATA
115823422 ATTTTT
1 ATTTTT
115823428 TAATAATTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
16 10 0.20
17 5 0.10
18 14 0.28
19 8 0.16
20 13 0.26
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTTATATATTTTATA
Found at i:115823426 original size:25 final size:25
Alignment explanation
Indices: 115823371--115823427 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
115823361 TTTTTTATTT
*
115823371 TTTTATAATTTTTATAATTTTTATAA
1 TTTT-TAATTTTTATAATTTTTAGAA
*
115823397 TTTTTAATTTTTATGATATTTTAGAA
1 TTTTTAATTTTTATAAT-TTTTAGAA
115823423 TTTTT
1 TTTTT
115823428 TAATAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 12 0.43
26 16 0.57
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (25 bp):
TTTTTAATTTTTATAATTTTTAGAA
Found at i:115838483 original size:17 final size:17
Alignment explanation
Indices: 115838461--115838495 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
115838451 AAGAAAGTGG
*
115838461 AGTGTAAAATCTAAAGC
1 AGTGTAAAATATAAAGC
115838478 AGTGTAAAATATAAAGC
1 AGTGTAAAATATAAAGC
115838495 A
1 A
115838496 CATAATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.09, G:0.17, T:0.23
Consensus pattern (17 bp):
AGTGTAAAATATAAAGC
Found at i:115839776 original size:17 final size:17
Alignment explanation
Indices: 115839754--115839789 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
115839744 CCAGTAGAAA
115839754 ATACACCTTCAATAGTG
1 ATACACCTTCAATAGTG
115839771 ATACACCTTCAATAGTG
1 ATACACCTTCAATAGTG
115839788 AT
1 AT
115839790 CATTACCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (17 bp):
ATACACCTTCAATAGTG
Found at i:115849667 original size:23 final size:23
Alignment explanation
Indices: 115849637--115849684 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
115849627 AATAGTTTTA
115849637 ATTGTTTATTTGAGTGGTTGTTC
1 ATTGTTTATTTGAGTGGTTGTTC
115849660 ATTGTTTATTTGAGTGGTTGTTC
1 ATTGTTTATTTGAGTGGTTGTTC
115849683 AT
1 AT
115849685 CTACTTAGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.15, C:0.04, G:0.25, T:0.56
Consensus pattern (23 bp):
ATTGTTTATTTGAGTGGTTGTTC
Found at i:115873697 original size:21 final size:21
Alignment explanation
Indices: 115873672--115873721 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
115873662 CAATAGAAGT
115873672 GTGAATGATAGGAAATTGACA
1 GTGAATGATAGGAAATTGACA
* *
115873693 GTGAATGACAGGGAATTGACA
1 GTGAATGATAGGAAATTGACA
115873714 -TGAATGAT
1 GTGAATGAT
115873722 TTTATTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.40, C:0.06, G:0.30, T:0.24
Consensus pattern (21 bp):
GTGAATGATAGGAAATTGACA
Found at i:115874031 original size:4 final size:4
Alignment explanation
Indices: 115874022--115874132 Score: 222
Period size: 4 Copynumber: 27.8 Consensus size: 4
115874012 TGAAATTAAG
115874022 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
115874070 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
115874118 GTAT GTAT GTAT GTA
1 GTAT GTAT GTAT GTA
115874133 ATTGAGTTAT
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 107 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:115880339 original size:17 final size:17
Alignment explanation
Indices: 115880301--115880339 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
115880291 TCGAAATCGG
* *
115880301 ATAATTAACTGAATTAA
1 ATAATTAACCGAAATAA
*
115880318 CTAATTAACCGAAATAA
1 ATAATTAACCGAAATAA
115880335 ATAAT
1 ATAAT
115880340 AAATATTATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (17 bp):
ATAATTAACCGAAATAA
Found at i:115881142 original size:33 final size:33
Alignment explanation
Indices: 115881095--115881163 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
115881085 CTGCCAGGTG
*
115881095 AATGACAAATTTACCCCATTTTTCAATATTTGT
1 AATGACAAACTTACCCCATTTTTCAATATTTGT
115881128 AATGACAAACTTACCCCATTTTTCAATATTTGT
1 AATGACAAACTTACCCCATTTTTCAATATTTGT
115881161 AAT
1 AAT
115881164 TTAGTGCTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.41
Consensus pattern (33 bp):
AATGACAAACTTACCCCATTTTTCAATATTTGT
Found at i:115887079 original size:8 final size:8
Alignment explanation
Indices: 115887056--115887132 Score: 57
Period size: 8 Copynumber: 8.9 Consensus size: 8
115887046 TGTCACATCA
115887056 ATAAATAAT
1 ATAAA-AAT
*
115887065 TTAAAAATT
1 ATAAAAA-T
115887074 ATAAAAAT
1 ATAAAAAT
115887082 AGTAAAAAGT
1 A-TAAAAA-T
115887092 A-AAAAATT
1 ATAAAAA-T
115887100 ATTAAAAAAT
1 A-T-AAAAAT
115887110 ATAAAAAT
1 ATAAAAAT
* *
115887118 ATATAATT
1 ATAAAAAT
115887126 ATAAAAA
1 ATAAAAA
115887133 AATTAGTGTG
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
8 28 0.51
9 18 0.33
10 4 0.07
11 5 0.09
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (8 bp):
ATAAAAAT
Found at i:115887087 original size:18 final size:17
Alignment explanation
Indices: 115887056--115887132 Score: 68
Period size: 18 Copynumber: 4.4 Consensus size: 17
115887046 TGTCACATCA
*
115887056 ATAAATAATTTAAAAATT
1 ATAAA-AATATAAAAATT
*
115887074 ATAAAAATAGTAAAAAGT
1 ATAAAAATA-TAAAAATT
*
115887092 A-AAAAATTATTAAAAAAT
1 ATAAAAA-TA-TAAAAATT
*
115887110 ATAAAAATAT-ATAATT
1 ATAAAAATATAAAAATT
115887126 ATAAAAA
1 ATAAAAA
115887133 AATTAGTGTG
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
16 11 0.22
17 9 0.18
18 25 0.50
19 5 0.10
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (17 bp):
ATAAAAATATAAAAATT
Found at i:115887100 original size:26 final size:24
Alignment explanation
Indices: 115887067--115887132 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 24
115887057 TAAATAATTT
115887067 AAAAATTATAAAAATAGTAAAAAGTA
1 AAAAATTATAAAAATA-TAAAAA-TA
115887093 AAAAATTATTAAAAAATATAAAAATA
1 AAAAATTA-T-AAAAATATAAAAATA
* *
115887119 TATAATTATAAAAA
1 AAAAATTATAAAAA
115887133 AATTAGTGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
24 5 0.14
25 1 0.03
26 16 0.44
27 7 0.19
28 7 0.19
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (24 bp):
AAAAATTATAAAAATATAAAAATA
Found at i:115893933 original size:20 final size:21
Alignment explanation
Indices: 115893893--115893933 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
115893883 TTAATCATTA
*
115893893 ATTTTATTAAAAATTATTATT
1 ATTTTATTAAAAATTAGTATT
*
115893914 ATTTT-TTAAAATTTAGTATT
1 ATTTTATTAAAAATTAGTATT
115893934 TTAATTAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTTATTAAAAATTAGTATT
Found at i:115901456 original size:41 final size:40
Alignment explanation
Indices: 115901324--115901457 Score: 100
Period size: 41 Copynumber: 3.4 Consensus size: 40
115901314 ACCAGTTTGG
* * * *
115901324 CACCCAGTGTCTCATCGGATAATTCGAAGTAATAATTTGA
1 CACCCAGTGTCTCATCGAATAATCCGAAGTAGTAAATTGA
* * * *
115901364 CACCTAGTATCTCAT--AAGCTAAACCG-A--AGTAAATTGG
1 CACCCAGTGTCTCATCGAA--TAATCCGAAGTAGTAAATTGA
* *
115901401 TACCC-GATGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
1 CACCCAG-TGTCTCATCGAA-TAATCCGAAGTAGTAAATTGA
115901442 CACCCAGTGTCTCATC
1 CACCCAGTGTCTCATC
115901458 AACTCGAAGT
Statistics
Matches: 68, Mismatches: 17, Indels: 17
0.67 0.17 0.17
Matches are distributed among these distances:
36 1 0.01
37 16 0.24
38 7 0.10
39 4 0.06
40 18 0.26
41 21 0.31
42 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (40 bp):
CACCCAGTGTCTCATCGAATAATCCGAAGTAGTAAATTGA
Found at i:115901695 original size:28 final size:29
Alignment explanation
Indices: 115901630--115901697 Score: 70
Period size: 28 Copynumber: 2.4 Consensus size: 29
115901620 CATTTCAATT
* *
115901630 CAAAAATCAATCCATTCAATATATATATA
1 CAAATATCAATTCATTCAATATATATATA
* *
115901659 CTAAT-TCAATTCATTCAATCA-AT-TATC
1 CAAATATCAATTCATTCAAT-ATATATATA
115901686 CAAATATCAATT
1 CAAATATCAATT
115901698 ACTCACCTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
27 7 0.22
28 21 0.66
29 4 0.12
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (29 bp):
CAAATATCAATTCATTCAATATATATATA
Found at i:115902430 original size:5 final size:5
Alignment explanation
Indices: 115902422--115902483 Score: 53
Period size: 5 Copynumber: 12.8 Consensus size: 5
115902412 ATTTTATCAT
*
115902422 TATAA TATAA TATAA TAT-A TATAA T-TAA TAATTAA TAT-A TAATAT
1 TATAA TATAA TATAA TATAA TATAA TATAA T-A-TAA TATAA T-ATAA
115902467 TATAA TAT-- TATAA TATA
1 TATAA TATAA TATAA TATA
115902484 TATTTTAACT
Statistics
Matches: 47, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
3 3 0.06
4 10 0.21
5 28 0.60
6 2 0.04
7 4 0.09
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (5 bp):
TATAA
Found at i:115902459 original size:16 final size:13
Alignment explanation
Indices: 115902423--115902483 Score: 69
Period size: 11 Copynumber: 5.0 Consensus size: 13
115902413 TTTTATCATT
115902423 ATAATATAATATA
1 ATAATATAATATA
115902436 ATATATATAAT-TA
1 ATA-ATATAATATA
115902449 ATAAT-TAATAT-
1 ATAATATAATATA
115902460 ATAATAT--TATA
1 ATAATATAATATA
*
115902471 ATATTATAATATA
1 ATAATATAATATA
115902484 TATTTTAACT
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
10 3 0.07
11 15 0.37
12 4 0.10
13 12 0.29
14 7 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATAATATAATATA
Found at i:115902464 original size:7 final size:7
Alignment explanation
Indices: 115902431--115902485 Score: 53
Period size: 7 Copynumber: 7.7 Consensus size: 7
115902421 TTATAATATA
115902431 ATATAAT
1 ATATAAT
115902438 ATAT-AT
1 ATATAAT
115902444 A-ATTAAT
1 ATA-TAAT
115902451 A-ATTAAT
1 ATA-TAAT
115902458 ATATAAT
1 ATATAAT
115902465 ATTATAAT
1 A-TATAAT
115902473 ATTATAAT
1 A-TATAAT
115902481 ATATA
1 ATATA
115902486 TTTTAACTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
5 1 0.02
6 4 0.09
7 23 0.52
8 16 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
ATATAAT
Found at i:115909176 original size:26 final size:26
Alignment explanation
Indices: 115909138--115909195 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
115909128 CATGAAATTC
115909138 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
115909164 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
115909190 TTATCA
1 TTATCA
115909196 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:115910214 original size:47 final size:47
Alignment explanation
Indices: 115910106--115910215 Score: 134
Period size: 47 Copynumber: 2.3 Consensus size: 47
115910096 CGGGATAAGT
* * *
115910106 ACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTAC
1 ACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTAC
* * *
115910153 ACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-AC
1 ACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTAC
115910200 ACATAGTG-TCTCATCG
1 ACATAGTGCT-TCATCG
115910216 ACTCAATGTC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 50 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.26
Consensus pattern (47 bp):
ACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTAC
Found at i:115911034 original size:4 final size:4
Alignment explanation
Indices: 115911017--115911047 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
115911007 TCTCTGTTAG
*
115911017 TCTT TCTA TCTT TCTT TCTT TCTT TCTT TCT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCT
115911048 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (4 bp):
TCTT
Found at i:115911079 original size:50 final size:50
Alignment explanation
Indices: 115910977--115911079 Score: 163
Period size: 50 Copynumber: 2.1 Consensus size: 50
115910967 TATTTATTTA
* *
115910977 TTTCTTTCCTTCTTTCTTTCTCACGTTTGCTCTCTGTTAGTCTTTCTATC
1 TTTCTTTCCTTCTTTCTTTCTCACGTTTGCTCTCTGTAACTCTTTCTATC
*
115911027 TTTCTTTCTTTCTTTCTTTCTCACGTTTGCTCTCTGTAACT-TTTCTATTC
1 TTTCTTTCCTTCTTTCTTTCTCACGTTTGCTCTCTGTAACTCTTTCTA-TC
115911077 TTT
1 TTT
115911080 ACTCATTATT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
49 6 0.12
50 43 0.88
ACGTcount: A:0.07, C:0.26, G:0.07, T:0.60
Consensus pattern (50 bp):
TTTCTTTCCTTCTTTCTTTCTCACGTTTGCTCTCTGTAACTCTTTCTATC
Found at i:115911091 original size:14 final size:14
Alignment explanation
Indices: 115911072--115911102 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
115911062 GTAACTTTTC
115911072 TATTCTTTACTCAT
1 TATTCTTTACTCAT
*
115911086 TATTCTTTATTCAT
1 TATTCTTTACTCAT
115911100 TAT
1 TAT
115911103 ACTATATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTCTTTACTCAT
Found at i:115915413 original size:40 final size:38
Alignment explanation
Indices: 115915293--115915421 Score: 170
Period size: 38 Copynumber: 3.3 Consensus size: 38
115915283 AAAATAAATT
115915293 GTGCTGAG-ATTATATCCGGGTTAAATCCCGCAGGCTTC
1 GTGCTG-GTATTATATCCGGGTTAAATCCCGCAGGCTTC
* *
115915331 GTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTA
1 GTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTC
* * *
115915369 GTGCTGGTATTATATCTGAGTTTAAAGTCCCGTAGGCTTC
1 GTGCTGGTATTATATCCG-GGTTAAA-TCCCGCAGGCTTC
*
115915409 GTGCTGGTGTTAT
1 GTGCTGGTATTAT
115915422 GTTTGGGTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
37 1 0.01
38 51 0.64
39 6 0.08
40 22 0.28
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.33
Consensus pattern (38 bp):
GTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTC
Found at i:115917708 original size:46 final size:46
Alignment explanation
Indices: 115917648--115917875 Score: 325
Period size: 46 Copynumber: 5.0 Consensus size: 46
115917638 TTTGACATGA
* * * * * *
115917648 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
115917694 TGCCATGGTATCTTTCAACCATGGTC-TAGTTGATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTA-CACATTTCATATCAGGT
115917740 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
115917786 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
115917832 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
115917876 AGAGCACATT
Statistics
Matches: 167, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
45 6 0.04
46 159 0.95
47 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:115925999 original size:19 final size:20
Alignment explanation
Indices: 115925970--115926007 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
115925960 TCTTGGGCTT
115925970 ATATGATTATATATTATAAA
1 ATATGATTATATATTATAAA
*
115925990 ATAT-ATTATATTTTATAA
1 ATATGATTATATATTATAA
115926008 TAATTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATATGATTATATATTATAAA
Found at i:115927887 original size:22 final size:20
Alignment explanation
Indices: 115927853--115927900 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 20
115927843 AACTTATAAA
115927853 TTTTTGACAAATTATGTACTTT
1 TTTTTGACAAATT-TGT-CTTT
*
115927875 TTTTTGA-ATAATTTGTGTTT
1 TTTTTGACA-AATTTGTCTTT
115927895 TTTTTG
1 TTTTTG
115927901 TCATGGTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 9 0.38
21 4 0.17
22 11 0.46
ACGTcount: A:0.21, C:0.04, G:0.12, T:0.62
Consensus pattern (20 bp):
TTTTTGACAAATTTGTCTTT
Found at i:115927956 original size:27 final size:27
Alignment explanation
Indices: 115927926--115927984 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
115927916 TATTTACATA
* *
115927926 AAATTTAATATAGTAAAAA-ACTATAGT
1 AAATATAATATA-AAAAAAGACTATAGT
* *
115927953 AAATATATTTTAAAAAAAGACTATAGT
1 AAATATAATATAAAAAAAGACTATAGT
115927980 AAATA
1 AAATA
115927985 AATTTTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATATAATATAAAAAAAGACTATAGT
Found at i:115927989 original size:27 final size:26
Alignment explanation
Indices: 115927940--115927993 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
115927930 TTAATATAGT
*
115927940 AAAAAACTATAGTAAATATATTTTAA
1 AAAAAACTATAGTAAATAAATTTTAA
115927966 AAAAAGACTATAGTAAATAAATTTTAA
1 AAAAA-ACTATAGTAAATAAATTTTAA
115927993 A
1 A
115927994 TATATTCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (26 bp):
AAAAAACTATAGTAAATAAATTTTAA
Found at i:115930591 original size:22 final size:22
Alignment explanation
Indices: 115930566--115930609 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
115930556 CATATTTGTG
115930566 AGGTTTACGTTATAGTATTATA
1 AGGTTTACGTTATAGTATTATA
*
115930588 AGGTTTATGTTATAGTATTATA
1 AGGTTTACGTTATAGTATTATA
115930610 TGTTATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (22 bp):
AGGTTTACGTTATAGTATTATA
Found at i:115937190 original size:5 final size:5
Alignment explanation
Indices: 115937182--115937223 Score: 66
Period size: 5 Copynumber: 8.2 Consensus size: 5
115937172 TATTTTATTA
*
115937182 AATCT AATCT AATCT AATGT AATCT AATCT AATCTT AATCT A
1 AATCT AATCT AATCT AATCT AATCT AATCT AATC-T AATCT A
115937224 TTCCATATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 29 0.85
6 5 0.15
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.40
Consensus pattern (5 bp):
AATCT
Found at i:115940165 original size:35 final size:35
Alignment explanation
Indices: 115939996--115940166 Score: 211
Period size: 35 Copynumber: 4.9 Consensus size: 35
115939986 CACAACTCAT
* * * *
115939996 TATGGTTAATACCATACCTAAGTTTCACAA-TACGG
1 TATGGATAATACCATACCTACGTATCATAACT-CGG
* * *
115940031 TATGGAAAATA-CTTACCTACGTATCATAGCTCGG
1 TATGGATAATACCATACCTACGTATCATAACTCGG
115940065 TATGGATAATACCATACCTACGTATCATAACTCGG
1 TATGGATAATACCATACCTACGTATCATAACTCGG
* * **
115940100 TATGGATAATACCATACCTATGCATCATAACTCAA
1 TATGGATAATACCATACCTACGTATCATAACTCGG
*
115940135 TATGGATAATACCATACCTACGTGTCATAACT
1 TATGGATAATACCATACCTACGTATCATAACT
115940167 TTGCCATGAA
Statistics
Matches: 117, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
34 26 0.22
35 91 0.78
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (35 bp):
TATGGATAATACCATACCTACGTATCATAACTCGG
Found at i:115944586 original size:19 final size:19
Alignment explanation
Indices: 115944546--115944587 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
115944536 ACAAGTCAAC
* *
115944546 AAATAATTTAAAAATGATA
1 AAATAATTTAAAAATAAAA
*
115944565 AAATATTTTAAAAATAAAA
1 AAATAATTTAAAAATAAAA
115944584 AAAT
1 AAAT
115944588 TCAATTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (19 bp):
AAATAATTTAAAAATAAAA
Found at i:115954404 original size:30 final size:31
Alignment explanation
Indices: 115954368--115954426 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
115954358 TCATCCCAAT
*
115954368 GATTTAAAT-AAAACTTTCAAATAGTTCAGC
1 GATTTAAATAAAAACTTTCAAATAATTCAGC
115954398 GATTTAAATAAAAACTTTCAAATAATTCA
1 GATTTAAATAAAAACTTTCAAATAATTCA
115954427 ATGATTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 9 0.33
31 18 0.67
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.34
Consensus pattern (31 bp):
GATTTAAATAAAAACTTTCAAATAATTCAGC
Found at i:115957439 original size:29 final size:31
Alignment explanation
Indices: 115957370--115957444 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 31
115957360 TATTCCCTTT
* * *
115957370 AAATTGTTTTTTTATAATATCTACTTTTTTT
1 AAATTGTTTTTTTATAACATCTACTTATTTA
* * *
115957401 AATTTATTTTTTTAT-GCAT-TACTTATTTA
1 AAATTGTTTTTTTATAACATCTACTTATTTA
*
115957430 AAATTGTTTTGTTAT
1 AAATTGTTTTTTTAT
115957445 TTATTTTAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
29 20 0.57
30 2 0.06
31 13 0.37
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (31 bp):
AAATTGTTTTTTTATAACATCTACTTATTTA
Found at i:115957454 original size:23 final size:24
Alignment explanation
Indices: 115957423--115957474 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
115957413 TATGCATTAC
* *
115957423 TTATTTAAAATTG-TTT-TGTTAT
1 TTATTTTAAATGGCTTTATGTTAT
115957445 TTATTTTAAATGGCTTTATGTTAT
1 TTATTTTAAATGGCTTTATGTTAT
115957469 TTATTT
1 TTATTT
115957475 CATTCTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 11 0.42
23 3 0.12
24 12 0.46
ACGTcount: A:0.25, C:0.02, G:0.10, T:0.63
Consensus pattern (24 bp):
TTATTTTAAATGGCTTTATGTTAT
Found at i:115978360 original size:18 final size:18
Alignment explanation
Indices: 115978337--115978393 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
115978327 TTGTTTATTA
115978337 TTATTCAATAACAATCAG
1 TTATTCAATAACAATCAG
* * *
115978355 TTATTCAGTATCAAGCA-
1 TTATTCAATAACAATCAG
115978372 --A-TCAATAACAATCAG
1 TTATTCAATAACAATCAG
115978387 TTATTCA
1 TTATTCA
115978394 GTCCAATAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
14 10 0.34
15 1 0.03
17 1 0.03
18 17 0.59
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (18 bp):
TTATTCAATAACAATCAG
Found at i:115979881 original size:14 final size:15
Alignment explanation
Indices: 115979863--115979900 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
115979853 TTTATTTTTA
115979863 ATAATAATCAT-AATT
1 ATAATAAT-ATAAATT
115979878 -TAATAATATAAATT
1 ATAATAATATAAATT
115979892 ATAATAATA
1 ATAATAATA
115979901 ATGAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (15 bp):
ATAATAATATAAATT
Found at i:115981149 original size:58 final size:57
Alignment explanation
Indices: 115981017--115981151 Score: 173
Period size: 58 Copynumber: 2.3 Consensus size: 57
115981007 TTTAATTCAT
* ** *
115981017 ATAATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATTAAATTATATTTA
1 ATAATAATTATATTAA-AATCTGGTTAAACTATATATTATTTTATTAAATTATATTTA
* * *
115981075 ATAATAATTATGTTAAAATCTGGTTAAACTATTTATTATTTTTATTAAATTATTTTTA
1 ATAATAATTATATTAAAATCTGGTTAAACTATATATTA-TTTTATTAAATTATATTTA
115981133 ATAATAATCT-TATTAAAAT
1 ATAATAAT-TATATTAAAAT
115981152 TTAATAACAA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
57 17 0.25
58 49 0.73
59 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (57 bp):
ATAATAATTATATTAAAATCTGGTTAAACTATATATTATTTTATTAAATTATATTTA
Found at i:115994076 original size:11 final size:11
Alignment explanation
Indices: 115994030--115994104 Score: 53
Period size: 11 Copynumber: 6.9 Consensus size: 11
115994020 AATATTCCCT
*
115994030 TCAAAAATCTA
1 TCAAAATTCTA
*
115994041 TCAAATTTC-A
1 TCAAAATTCTA
** * *
115994051 TTGAAATTTTC
1 TCAAAATTCTA
*
115994062 TCAAAATTCAA
1 TCAAAATTCTA
**
115994073 TCAAGTTTCTA
1 TCAAAATTCTA
115994084 TCAAAATTCTA
1 TCAAAATTCTA
*
115994095 TCAAATTTCT
1 TCAAAATTCT
115994105 TTGTTTAAAA
Statistics
Matches: 45, Mismatches: 18, Indels: 2
0.69 0.28 0.03
Matches are distributed among these distances:
10 6 0.13
11 39 0.87
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (11 bp):
TCAAAATTCTA
Found at i:115994087 original size:22 final size:22
Alignment explanation
Indices: 115994037--115994104 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
115994027 CCTTCAAAAA
* * *
115994037 TCTATCAAATTTCATTGAAATT
1 TCTATCAAAATTCAATCAAATT
* *
115994059 T-TCTCAAAATTCAATCAAGTT
1 TCTATCAAAATTCAATCAAATT
*
115994080 TCTATCAAAATTCTATCAAATT
1 TCTATCAAAATTCAATCAAATT
115994102 TCT
1 TCT
115994105 TTGTTTAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
21 16 0.43
22 21 0.57
ACGTcount: A:0.37, C:0.18, G:0.03, T:0.43
Consensus pattern (22 bp):
TCTATCAAAATTCAATCAAATT
Found at i:115994289 original size:48 final size:48
Alignment explanation
Indices: 115994237--115994370 Score: 173
Period size: 48 Copynumber: 2.8 Consensus size: 48
115994227 AGTGATAATT
*
115994237 TTAAATTTTCAATACTATTTGATATTTTTTTAATTTATGCAAATT-TAA
1 TTAAATTTTCAATACTATTTGATATTTTTTTCATTTATGC-AATTATAA
* * * *
115994285 TTAAATTTGCAATACTATTTGATACTTTATTCATTTACGCAATTATAA
1 TTAAATTTTCAATACTATTTGATATTTTTTTCATTTATGCAATTATAA
* **
115994333 TTAAAATTTCAATACTGCTTGAT-TTTTTTTCATTTATG
1 TTAAATTTTCAATACTATTTGATATTTTTTTCATTTATG
115994371 ATGTTTGCAT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
47 16 0.22
48 57 0.78
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (48 bp):
TTAAATTTTCAATACTATTTGATATTTTTTTCATTTATGCAATTATAA
Found at i:115999584 original size:16 final size:17
Alignment explanation
Indices: 115999560--115999593 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
115999550 GTATTGATAT
115999560 TTGACTTGAAT-GAGAA
1 TTGACTTGAATGGAGAA
*
115999576 TTGAGTTGAATGGAGAA
1 TTGACTTGAATGGAGAA
115999593 T
1 T
115999594 GTGTGTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.32
Consensus pattern (17 bp):
TTGACTTGAATGGAGAA
Found at i:116004097 original size:23 final size:23
Alignment explanation
Indices: 116004071--116004152 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 23
116004061 GCTTTTCTGA
116004071 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* ** *
116004094 TCAGGCACCTCGTGTGCCGTA--
1 TCAGGCACTTTATGTGTCGTATT
*
116004115 TCAGGCACTTTGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
116004137 T-AGGCACTTTATGTGT
1 TCAGGCACTTTATGTGT
116004153 TGTCTACTGA
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
21 31 0.63
22 1 0.02
23 17 0.35
ACGTcount: A:0.15, C:0.21, G:0.26, T:0.39
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:116006866 original size:126 final size:126
Alignment explanation
Indices: 116006718--116006972 Score: 449
Period size: 126 Copynumber: 2.0 Consensus size: 126
116006708 TTATAGCCTC
116006718 ATTTTTCTACGAACTATCGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAAAAATTTTGCTG
1 ATTTTTCTACGAACTATCGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAAAAATTTTGCTG
* *
116006783 ACAGTGCATCCTTCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
* *
116006844 ATTTTTCTACGAACTA-CTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCT
1 ATTTTTCTACGAACTATC-GTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAAAAATTTTGCT
*
116006908 GACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
65 GACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
116006970 ATT
1 ATT
116006973 CTTACAGAAA
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
125 1 0.01
126 122 0.99
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTATCGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAAAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
Found at i:116007522 original size:20 final size:20
Alignment explanation
Indices: 116007487--116007544 Score: 93
Period size: 19 Copynumber: 3.0 Consensus size: 20
116007477 ATGAATTAAG
116007487 TAACCCTAAA-TTAATCAAT
1 TAACCCTAAATTTAATCAAT
*
116007506 TAACCGTAAATTTAATCAAT
1 TAACCCTAAATTTAATCAAT
116007526 TAACCCT-AATTTAATCAAT
1 TAACCCTAAATTTAATCAAT
116007545 CTCTAATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 21 0.58
20 15 0.42
ACGTcount: A:0.45, C:0.19, G:0.02, T:0.34
Consensus pattern (20 bp):
TAACCCTAAATTTAATCAAT
Found at i:116007688 original size:16 final size:16
Alignment explanation
Indices: 116007663--116007702 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
116007653 TTAAATTCTA
*
116007663 AACCTTAAAAAACCCT
1 AACCTTAAAAAACCAT
*
116007679 AA-CTTTAAAAACCAT
1 AACCTTAAAAAACCAT
116007694 AACCTTAAA
1 AACCTTAAA
116007703 TCCTAAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.23
Consensus pattern (16 bp):
AACCTTAAAAAACCAT
Found at i:116007735 original size:22 final size:22
Alignment explanation
Indices: 116007684--116007726 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
116007674 ACCCTAACTT
116007684 TAAAAACCATAACCTTAAATCC
1 TAAAAACCATAACCTTAAATCC
116007706 TAAAAACCATAACCTTAAATC
1 TAAAAACCATAACCTTAAATC
116007727 AATTAAACCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (22 bp):
TAAAAACCATAACCTTAAATCC
Found at i:116023873 original size:21 final size:21
Alignment explanation
Indices: 116023831--116023906 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
116023821 TATTTGAAAT
116023831 TAATATAA--AAATAATAATAA
1 TAATATAATTAAATAAT-ATAA
116023851 TAATATAATTAAATAATATAA
1 TAATATAATTAAATAATATAA
* *
116023872 TAATACT-ATTACATAAGATAA
1 TAATA-TAATTAAATAATATAA
*
116023893 -AAAATAAGTTAAAT
1 TAATATAA-TTAAAT
116023907 GTATTGCACT
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
19 1 0.02
20 12 0.26
21 26 0.55
22 8 0.17
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (21 bp):
TAATATAATTAAATAATATAA
Found at i:116025714 original size:30 final size:30
Alignment explanation
Indices: 116025680--116025787 Score: 76
Period size: 30 Copynumber: 3.3 Consensus size: 30
116025670 GAAGAAAAAG
116025680 GATAAAGAGAAAAAGAAGGAAAAGAAGACA
1 GATAAAGAGAAAAAGAAGGAAAAGAAGACA
116025710 GATAACGAGGATGAACAAAAGAAGGACAAGAAGAAGA-A
1 GATAA--A-GA-G-A-AAAAGAAGG--AA-AAGAAGACA
* * *
116025748 GGATAAGGAGAAAAAGGAA-GAAGAGAAGTCA
1 -GATAAAGAGAAAAA-GAAGGAAAAGAAGACA
116025779 GATAAAGAG
1 GATAAAGAG
116025788 GATGATGTAG
Statistics
Matches: 62, Mismatches: 4, Indels: 24
0.69 0.04 0.27
Matches are distributed among these distances:
30 18 0.29
31 3 0.05
32 1 0.02
33 7 0.11
34 5 0.08
35 2 0.03
36 11 0.18
38 3 0.05
39 12 0.19
ACGTcount: A:0.59, C:0.05, G:0.31, T:0.06
Consensus pattern (30 bp):
GATAAAGAGAAAAAGAAGGAAAAGAAGACA
Found at i:116025955 original size:93 final size:92
Alignment explanation
Indices: 116025743--116026278 Score: 588
Period size: 93 Copynumber: 5.8 Consensus size: 92
116025733 GGACAAGAAG
* * * *
116025743 AAGAAGGATAAGGAGAAAAAGGAAGAAGAGAAGTCAGATAAAGAGGATGATGTAGAAGATGCCAA
1 AAGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGT-GGATAAAGAGGATGAGGTAGAAGATGCC-A
116025808 AGAGAAGGAGAAGAAGAAGAAGAAGAAAGAT
64 A-AG-AGGAGAAGAAGAAGAAGAAGAAAGAT
* ** * * * *
116025839 AATAAGGATAAGGAGAAAAAGAAAGACCAGAAGTGTGATAAAGAGGATGAGGAAGAAAATGTCGA
1 AAGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGTG-GATAAAGAGGATGAGGTAGAAGATGCCAA
*
116025904 AGAGGAGGAGAAGAAGAAGAAGAAAGAT
65 AGAGGAGAAGAAGAAGAAGAAGAAAGAT
* ** *
116025932 AAGAAGGATAACGAGAAAAAGAAAGAAAAGAAGTCGGACGAAGAGGATGATGTAGAAGATGCCAA
1 AAGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGT-GGATAAAGAGGATGAGGTAGAAGATGCCAA
* *
116025997 AGAGGCGAAGGAGAAGAAGAAGAAAGAT
65 AGAGGAGAAGAAGAAGAAGAAGAAAGAT
* * *
116026025 AACAAGGATAAGGAGAAAAAGAAAGATAAGAAGTGCGATAAAGAGGATGACGTAGAAGATGCC--
1 AAGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGTG-GATAAAGAGGATGAGGTAGAAGATGCCAA
116026088 A-A--AG-AG--G-AGAAGAAGAAAGAT
65 AGAGGAGAAGAAGAAGAAGAAGAAAGAT
* * * *
116026109 AAGAAGGATAAGGAGAAGAAGAAAGATAAGAAGTCGGATGAAGAGGATG-GAGTAGAAGATGACA
1 AAGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGT-GGATAAAGAGGATGAG-GTAGAAGATGCCA
* * *
116026173 AAGAGGAGAAAAAGAAGAAAAAGAAAGAG
64 AAGAGGAGAAGAAGAAGAAGAAGAAAGAT
* ** * * * *
116026202 AAGAAGGATAAGGAGAAAAAGAAAGAACAGAAGTCCAATAAAGAGGATGATGTAAAAGATGACGA
1 AAGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGT-GGATAAAGAGGATGAGGTAGAAGATGCCAA
*
116026267 AGAGAAGAAGAA
65 AGAGGAGAAGAA
116026279 AGATAAGAAG
Statistics
Matches: 374, Mismatches: 51, Indels: 33
0.82 0.11 0.07
Matches are distributed among these distances:
84 69 0.18
85 2 0.01
86 1 0.00
87 3 0.01
88 1 0.00
89 2 0.01
90 2 0.01
91 1 0.00
92 2 0.01
93 234 0.63
94 3 0.01
95 1 0.00
96 53 0.14
ACGTcount: A:0.55, C:0.04, G:0.32, T:0.09
Consensus pattern (92 bp):
AAGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGTGGATAAAGAGGATGAGGTAGAAGATGCCAAA
GAGGAGAAGAAGAAGAAGAAGAAAGAT
Found at i:116026114 original size:12 final size:12
Alignment explanation
Indices: 116026097--116026141 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 12
116026087 CAAAGAGGAG
116026097 AAGAAGAAAGAT
1 AAGAAGAAAGAT
*
116026109 AAGAAGGATAAGGAG
1 AAGAA-GA-AA-GAT
116026124 AAGAAGAAAGAT
1 AAGAAGAAAGAT
116026136 AAGAAG
1 AAGAAG
116026142 TCGGATGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
12 13 0.46
13 4 0.14
14 4 0.14
15 7 0.25
ACGTcount: A:0.62, C:0.00, G:0.31, T:0.07
Consensus pattern (12 bp):
AAGAAGAAAGAT
Found at i:116026281 original size:12 final size:12
Alignment explanation
Indices: 116026266--116026314 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
116026256 AAAGATGACG
116026266 AAGAGAAGAAGA
1 AAGAGAAGAAGA
*
116026278 AAGATAAGAAGGA
1 AAGAGAAGAA-GA
*
116026291 TAAGGAGAAAAAGA
1 -AA-GAGAAGAAGA
116026305 AAGAGAAGAA
1 AAGAGAAGAA
116026315 ACATGAGGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
12 16 0.53
13 4 0.13
14 4 0.13
15 6 0.20
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (12 bp):
AAGAGAAGAAGA
Found at i:116026323 original size:27 final size:27
Alignment explanation
Indices: 116026268--116026342 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
116026258 AGATGACGAA
* **
116026268 GAGAAGAAGAAAGATAAGAAGGATAAG
1 GAGAAGAAGAAAGAGAAGAAACATAAG
* *
116026295 GAGAAAAAGAAAGAGAAGAAACATGAG
1 GAGAAGAAGAAAGAGAAGAAACATAAG
* *
116026322 GATGAAGAGGAAAGGGAAGAA
1 GA-GAAGAAGAAAGAGAAGAA
116026343 GTAAGTGAAG
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
27 24 0.62
28 15 0.38
ACGTcount: A:0.59, C:0.01, G:0.35, T:0.05
Consensus pattern (27 bp):
GAGAAGAAGAAAGAGAAGAAACATAAG
Found at i:116026332 original size:177 final size:175
Alignment explanation
Indices: 116025912--116026314 Score: 578
Period size: 177 Copynumber: 2.3 Consensus size: 175
116025902 GAAGAGGAGG
* *
116025912 AGAAGAAGAAGAAGAAAGATAAGAAGGATAACGAGAAAAAGAAAGAAAAGAAGTCGGACGAAGAG
1 AGAAG-AGAAGAAGAAAGATAAGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGTCGGATGAAGAG
* * ** * *
116025977 GATGATGTAGAAGATGCCAAAGAGGCGAAGGAGAAGAAGAAGAAAGATAACAAGGATAAGGAGAA
65 GATGATGTAGAAGATGACAAAGAGGAGAAAAAGAAGAAAAAGAAAGAGAACAAGGATAAGGAGAA
* * *
116026042 AAAGAAAGATAAGAAGTGCGATAAAGAGGATGACGTAGAAGATGCCAA
130 AAAGAAAGATAAGAAGTCCAATAAAGAGGATGACGTAAAAGATG-C-A
* * *
116026090 AGAGGAGAAGAAGAAAGATAAGAAGGATAAGGAGAAGAAGAAAGATAAGAAGTCGGATGAAGAGG
1 AGAAGAGAAGAAGAAAGATAAGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGTCGGATGAAGAGG
*
116026155 ATGGA-GTAGAAGATGACAAAGAGGAGAAAAAGAAGAAAAAGAAAGAGAAGAAGGATAAGGAGAA
66 AT-GATGTAGAAGATGACAAAGAGGAGAAAAAGAAGAAAAAGAAAGAGAACAAGGATAAGGAGAA
*
116026219 AAAGAAAGA-ACAGAAGTCCAATAAAGAGGATGATGTAAAAGATG-A
130 AAAGAAAGATA-AGAAGTCCAATAAAGAGGATGACGTAAAAGATGCA
* *
116026264 CGAAGAGAAGAAGAAAGATAAGAAGGATAAGGAGAAAAAGAAAGAGAAGAA
1 AGAAGAGAAGAAGAAAGATAAGAAGGATAAGGAGAAAAAGAAAGAAAAGAA
116026315 ACATGAGGAT
Statistics
Matches: 203, Mismatches: 20, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
174 48 0.24
176 1 0.00
177 148 0.73
178 6 0.03
ACGTcount: A:0.56, C:0.04, G:0.32, T:0.08
Consensus pattern (175 bp):
AGAAGAGAAGAAGAAAGATAAGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGTCGGATGAAGAGG
ATGATGTAGAAGATGACAAAGAGGAGAAAAAGAAGAAAAAGAAAGAGAACAAGGATAAGGAGAAA
AAGAAAGATAAGAAGTCCAATAAAGAGGATGACGTAAAAGATGCA
Found at i:116039162 original size:21 final size:21
Alignment explanation
Indices: 116039136--116039176 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
116039126 ATCTGCTCAA
* *
116039136 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
116039157 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
116039177 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:116045719 original size:31 final size:29
Alignment explanation
Indices: 116045684--116045763 Score: 72
Period size: 31 Copynumber: 2.7 Consensus size: 29
116045674 TTAAAATTAA
116045684 AAAAGTATAAAGACTAAATTAGATCAATATG
1 AAAAGTATAAAGACTAAATT-GATCAA-ATG
* * * *
116045715 AAAAGTACAAATATTGAAATTGATCAAATT
1 AAAAGTATAAAGACT-AAATTGATCAAATG
**
116045745 AAAA-TATATGGACTAAATT
1 AAAAGTATAAAGACTAAATT
116045764 CAAAACTTAC
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
28 5 0.13
29 5 0.13
30 6 0.15
31 18 0.46
32 5 0.13
ACGTcount: A:0.54, C:0.06, G:0.11, T:0.29
Consensus pattern (29 bp):
AAAAGTATAAAGACTAAATTGATCAAATG
Found at i:116048595 original size:19 final size:19
Alignment explanation
Indices: 116048571--116048607 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
116048561 TATTATTAGT
*
116048571 ATATTTATAATTTTAATAA
1 ATATTTATAATTTAAATAA
*
116048590 ATATTTATTATTTAAATA
1 ATATTTATAATTTAAATA
116048608 TTAATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATATTTATAATTTAAATAA
Found at i:116048711 original size:23 final size:23
Alignment explanation
Indices: 116048685--116048729 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
116048675 AAATATTAAA
*
116048685 TAATATATTAAAATAATAAATTT
1 TAATAAATTAAAATAATAAATTT
* *
116048708 TAATAAATTATATTAATAAATT
1 TAATAAATTAAAATAATAAATT
116048730 ATTATATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
TAATAAATTAAAATAATAAATTT
Found at i:116048723 original size:13 final size:13
Alignment explanation
Indices: 116048707--116048731 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
116048697 ATAATAAATT
116048707 TTAATAAATTATA
1 TTAATAAATTATA
116048720 TTAATAAATTAT
1 TTAATAAATTAT
116048732 TATATGATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAATAAATTATA
Found at i:116049735 original size:42 final size:43
Alignment explanation
Indices: 116049653--116049783 Score: 131
Period size: 42 Copynumber: 3.0 Consensus size: 43
116049643 CATTTACTCG
* * * ** *
116049653 ATGTCATAGTTCAACTATGGTCTTACACATCTTCATATATCA-
1 ATGTCATAGTCCAGCTATGGTCTTACACGTAATCACATATCAT
*
116049695 ATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACAT
1 ATGTCATAGTCCAGCTATGGTCTTACACGTAATCACATAT--CAT
116049740 ATCGATACCATAGTCCAGCTATGGTCTTACACG-AATCACATATC
1 AT-G-T--CATAGTCCAGCTATGGTCTTACACGTAATCACATATC
116049784 TCACTGATGC
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
42 33 0.45
44 2 0.03
45 2 0.03
46 2 0.03
47 1 0.01
48 10 0.14
49 24 0.32
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (43 bp):
ATGTCATAGTCCAGCTATGGTCTTACACGTAATCACATATCAT
Found at i:116049918 original size:31 final size:31
Alignment explanation
Indices: 116049883--116050089 Score: 260
Period size: 31 Copynumber: 6.8 Consensus size: 31
116049873 CTTGTCACTT
*
116049883 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * * *
116049914 GTAGCCGGAGTTACCATTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
116049945 GTAGTCGAAGCTACTATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * * *
116049976 GTAACAGAAGCTACCACTTTTCACTTATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
116050007 GTAGCAGAAGCTACCACTTTTCACTGATC--
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
116050036 --AGCCGAAGCTACCACTTTTCACTTATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
116050065 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
116050090 TGTCATTTGT
Statistics
Matches: 150, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
27 25 0.17
31 125 0.83
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:116050174 original size:50 final size:51
Alignment explanation
Indices: 116050069--116050193 Score: 162
Period size: 50 Copynumber: 2.5 Consensus size: 51
116050059 TATCAGGTAG
* * * * *
116050069 CCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGTATAG
1 CCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGTATAA
* * *
116050120 CCGAAGCTATTACTTATCACTT-TCACTTATCTTTGATCAGATAAGTGTAA
1 CCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGTATAA
*
116050170 CCGAAGTTATCACTTATCACTTGT
1 CCGAAGCTATCACTTATCACTTGT
116050194 TGCCATGGTC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
50 43 0.68
51 20 0.32
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (51 bp):
CCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGTATAA
Found at i:116053401 original size:23 final size:22
Alignment explanation
Indices: 116053371--116053433 Score: 69
Period size: 21 Copynumber: 2.9 Consensus size: 22
116053361 ACATAAATAT
*
116053371 ATATATACCTATATATATTAAAA-
1 ATATATA-C-ATATATAATAAAAC
116053394 ATATATACATATATAATAAAAC
1 ATATATACATATATAATAAAAC
116053416 ATATACTA-ATAT-TAATAA
1 ATATA-TACATATATAATAA
116053434 TAATAAGGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
21 18 0.49
22 10 0.27
23 9 0.24
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.37
Consensus pattern (22 bp):
ATATATACATATATAATAAAAC
Found at i:116053419 original size:20 final size:21
Alignment explanation
Indices: 116053381--116053421 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
116053371 ATATATACCT
* *
116053381 ATATATATTAAAAATATATAC
1 ATATATAATAAAAACATATAC
116053402 ATATATAAT-AAAACATATAC
1 ATATATAATAAAAACATATAC
116053422 TAATATTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (21 bp):
ATATATAATAAAAACATATAC
Found at i:116053427 original size:20 final size:21
Alignment explanation
Indices: 116053383--116053433 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
116053373 ATATACCTAT
*
116053383 ATATATT-A-AAAATATATAC
1 ATATATTAATAAAACATATAC
116053402 ATATA-TAATAAAACATATAC
1 ATATATTAATAAAACATATAC
116053422 -TAATATTAATAA
1 AT-ATATTAATAA
116053434 TAATAAGGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 1 0.04
19 7 0.26
20 13 0.48
21 6 0.22
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (21 bp):
ATATATTAATAAAACATATAC
Found at i:116053523 original size:22 final size:21
Alignment explanation
Indices: 116053445--116053530 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
116053435 AATAAGGATA
116053445 ATATAAAAATATATACATGAAAC
1 ATATAAAAATATATACAT--AAC
116053468 AGTATAAAAAATATATATAACTAATAAC
1 A-TAT--AAAA-ATATAT-AC--ATAAC
116053496 AT-T-AAAATATATACATAAC
1 ATATAAAAATATATACATAAC
116053515 ATATATAAAATATATA
1 ATATA-AAAATATATA
116053531 ATTGATAATA
Statistics
Matches: 53, Mismatches: 0, Indels: 21
0.72 0.00 0.28
Matches are distributed among these distances:
19 7 0.13
20 1 0.02
21 2 0.04
22 16 0.30
23 4 0.08
24 3 0.06
26 5 0.09
27 7 0.13
28 6 0.11
30 2 0.04
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.30
Consensus pattern (21 bp):
ATATAAAAATATATACATAAC
Done.