Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 354 of 362
Found at i:117065354 original size:14 final size:15
Alignment explanation
Indices: 117065319--117065356 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
117065309 TTCCAACTCC
117065319 TCGTTTTTTCCCTCT
1 TCGTTTTTTCCCTCT
117065334 TCGTTTTTTCCCTCT
1 TCGTTTTTTCCCTCT
117065349 TC-TTTTTT
1 TCGTTTTTT
117065357 GAGTTCTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.00, C:0.29, G:0.05, T:0.66
Consensus pattern (15 bp):
TCGTTTTTTCCCTCT
Found at i:117067045 original size:21 final size:21
Alignment explanation
Indices: 117067021--117067061 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
117067011 ACATATTGTA
* *
117067021 TATTCATATCCTATTCAAAAG
1 TATTCACATCATATTCAAAAG
117067042 TATTCACATCATATTCAAAA
1 TATTCACATCATATTCAAAA
117067062 ATAGTAAGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (21 bp):
TATTCACATCATATTCAAAAG
Found at i:117071384 original size:11 final size:11
Alignment explanation
Indices: 117071325--117071385 Score: 52
Period size: 11 Copynumber: 5.2 Consensus size: 11
117071315 ATTATAAATT
117071325 TATTTTAATAA
1 TATTTTAATAA
117071336 TTCATTTTAAATTAA
1 -T-ATTTT-AA-TAA
117071351 TATTTTAA-AA
1 TATTTTAATAA
**
117071361 TAATTTTTTTAA
1 T-ATTTTAATAA
117071373 TATTTTAATAA
1 TATTTTAATAA
117071384 TA
1 TA
117071386 AATATGTAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
10 3 0.08
11 15 0.38
12 6 0.15
13 10 0.25
14 3 0.08
15 3 0.08
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (11 bp):
TATTTTAATAA
Found at i:117071442 original size:24 final size:24
Alignment explanation
Indices: 117071415--117071463 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
117071405 ATTAAAATCT
117071415 AATAAAAATTATTTT-ATAATATAA
1 AATAAAAA-TATTTTAATAATATAA
**
117071439 AATATTAATATTTTAATAATATAA
1 AATAAAAATATTTTAATAATATAA
117071463 A
1 A
117071464 TATGAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
AATAAAAATATTTTAATAATATAA
Found at i:117071452 original size:23 final size:23
Alignment explanation
Indices: 117071424--117071474 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
117071414 TAATAAAAAT
*
117071424 TATTTT-ATAATATAAAATATTAA
1 TATTTTAATAATAT-AAATATGAA
117071447 TATTTTAATAATATAAATATGAA
1 TATTTTAATAATATAAATATGAA
117071470 TATTT
1 TATTT
117071475 ATTTAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
TATTTTAATAATATAAATATGAA
Found at i:117076081 original size:27 final size:28
Alignment explanation
Indices: 117076034--117076087 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
117076024 ACATTATTAA
**
117076034 TCACTTAATTATTATTTTTTAT-TTTTG
1 TCACTTAATTATTATAATTTATCTTTTG
117076061 TCACTTAATTATTCA-AATTTATCTTTT
1 TCACTTAATTATT-ATAATTTATCTTTT
117076088 TAGTCACTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.26, C:0.11, G:0.02, T:0.61
Consensus pattern (28 bp):
TCACTTAATTATTATAATTTATCTTTTG
Found at i:117076688 original size:26 final size:25
Alignment explanation
Indices: 117076641--117076689 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
117076631 TCTCCTAAAT
** *
117076641 TTTAAAATTTTAATTATATTTTTAG
1 TTTAAAAAATTAATTAGATTTTTAG
117076666 TTTAAAAAATTAATTAGACTTTTT
1 TTTAAAAAATTAATTAGA-TTTTT
117076690 TTGAAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (25 bp):
TTTAAAAAATTAATTAGATTTTTAG
Found at i:117078477 original size:12 final size:11
Alignment explanation
Indices: 117078438--117078509 Score: 51
Period size: 12 Copynumber: 6.4 Consensus size: 11
117078428 GTATAAAATA
*
117078438 TAATAATAACTT
1 TAATTATAA-TT
117078450 T-ATTATAATT
1 TAATTATAATT
117078460 GTAATTATAATT
1 -TAATTATAATT
*
117078472 TAAATTACAATTAT
1 T-AATTATAA-T-T
*
117078486 TAATTA-AAAT
1 TAATTATAATT
117078496 T-ATTATAATT
1 TAATTATAATT
117078506 TAAT
1 TAAT
117078510 ATTGACATTA
Statistics
Matches: 49, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
9 4 0.08
10 8 0.16
11 10 0.20
12 19 0.39
13 6 0.12
14 2 0.04
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (11 bp):
TAATTATAATT
Found at i:117078495 original size:19 final size:18
Alignment explanation
Indices: 117078462--117078497 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
117078452 TTATAATTGT
*
117078462 AATTATAATTTAAATTAC
1 AATTATAATTAAAATTAC
117078480 AATTATTAATTAAAATTA
1 AATTA-TAATTAAAATTA
117078498 TTATAATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTATAATTAAAATTAC
Found at i:117078529 original size:34 final size:34
Alignment explanation
Indices: 117078463--117078529 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
117078453 TATAATTGTA
*
117078463 ATTATAATTTAAATTACAATTATTAATTAAAATT
1 ATTATAATTTAAATTACAATTATTAATAAAAATT
117078497 ATTATAATTTAATATTGAC-ATTATT-ATAAAAAT
1 ATTATAATTTAA-ATT-ACAATTATTAATAAAAAT
117078530 AATAAAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 19 0.63
35 9 0.30
36 2 0.07
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (34 bp):
ATTATAATTTAAATTACAATTATTAATAAAAATT
Found at i:117085359 original size:13 final size:14
Alignment explanation
Indices: 117085343--117085378 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
117085333 CAATCTCATA
117085343 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
117085356 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
117085369 TCTC-ATTTCA
1 TCTCAATTTCA
117085379 TTCCAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:117085368 original size:18 final size:19
Alignment explanation
Indices: 117085330--117085370 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
117085320 TGGTTCATGT
117085330 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
117085349 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
117085367 TTTC
1 TTTC
117085371 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:117085583 original size:23 final size:21
Alignment explanation
Indices: 117085531--117085626 Score: 120
Period size: 21 Copynumber: 4.5 Consensus size: 21
117085521 TCTGATCAAT
** * *
117085531 ATACGACACATTAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
* *
117085552 AAACGACACACGAGGTACCTG
1 ATACGACACACGAGGTGCCTG
117085573 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
117085594 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
117085615 AAATACGACACA
1 --ATACGACACA
117085627 TAAAGTGCCT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
21 55 0.85
23 10 0.15
ACGTcount: A:0.36, C:0.27, G:0.22, T:0.15
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:117085825 original size:19 final size:19
Alignment explanation
Indices: 117085801--117085843 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
117085791 CCCATTTTCA
117085801 CAATTCATAC-AATATCA-TT
1 CAATTCA-ACAAATAT-ATTT
117085820 CAATTCAACAAATATATTT
1 CAATTCAACAAATATATTT
117085839 CAATT
1 CAATT
117085844 ATGCACATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (19 bp):
CAATTCAACAAATATATTT
Found at i:117086030 original size:15 final size:15
Alignment explanation
Indices: 117086005--117086062 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
117085995 TCATATATAT
117086005 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
117086021 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
117086036 AATAATTTCAATCAA
1 TATAAATTCAATCAA
117086051 TATAAATTCAAT
1 TATAAATTCAAT
117086063 AAAACAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:117086047 original size:30 final size:28
Alignment explanation
Indices: 117086008--117086066 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
117085998 TATATATTAT
117086008 ATAATTCAATCAATATAAATTCAATCAAA
1 ATAATTCAATCAATATAAATTCAAT-AAA
117086037 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAA-TTCAATCAATATAAATTCAATAAA
117086066 A
1 A
117086067 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 8 0.28
30 21 0.72
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:117096597 original size:14 final size:13
Alignment explanation
Indices: 117096551--117096602 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 13
117096541 CTAACTAAAT
*
117096551 TTAAAATAAAAAC
1 TTAAAATAAATAC
*
117096564 TTAACAATCCAATAGC
1 TTAA-AAT-AAATA-C
117096580 TTAAAATAAATAC
1 TTAAAATAAATAC
117096593 TTTAAAATAA
1 -TTAAAATAA
117096603 TTTAATGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 5 0.16
14 16 0.50
15 6 0.19
16 5 0.16
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.29
Consensus pattern (13 bp):
TTAAAATAAATAC
Found at i:117097374 original size:6 final size:6
Alignment explanation
Indices: 117097363--117097401 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
117097353 TTTGAATTAT
* *
117097363 ATTTGA ATTTGA ATTTGT ATTTGA A-TTGA ATTTTA ATTT
1 ATTTGA ATTTGA ATTTGA ATTTGA ATTTGA ATTTGA ATTT
117097402 TTAATTCTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (6 bp):
ATTTGA
Found at i:117097401 original size:17 final size:17
Alignment explanation
Indices: 117097353--117097397 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
117097343 GTAGAAAAAG
*
117097353 TTTGAATTATATTTGAA
1 TTTGAATTTTATTTGAA
117097370 TTTGAATTTGTATTTGAA
1 TTTGAATTT-TATTTGAA
117097388 -TTGAATTTTA
1 TTTGAATTTTA
117097398 ATTTTTAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 2 0.08
17 16 0.62
18 8 0.31
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (17 bp):
TTTGAATTTTATTTGAA
Found at i:117098368 original size:58 final size:58
Alignment explanation
Indices: 117098271--117098392 Score: 151
Period size: 58 Copynumber: 2.1 Consensus size: 58
117098261 ATTCTATAGT
* *
117098271 TAATTATAGAAGCTGCATTGATGTTTACATCCGCTAATCACTAATGCTTACTCTGTTA
1 TAATTATAGAAGCTGCATAGATGTTTACATCCGCTAATCACTAATGCTTACTCTGTCA
* * * *
117098329 TAATTATAGAAGCTGCATCAG-TGTTTACATTC-TTGAATCACTAATGTTTATTCTGTCA
1 TAATTATAGAAGCTGCAT-AGATGTTTACATCCGCT-AATCACTAATGCTTACTCTGTCA
117098387 T-ATTAT
1 TAATTAT
117098393 TTAAGAATAT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
57 6 0.11
58 49 0.88
59 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41
Consensus pattern (58 bp):
TAATTATAGAAGCTGCATAGATGTTTACATCCGCTAATCACTAATGCTTACTCTGTCA
Found at i:117114200 original size:2 final size:2
Alignment explanation
Indices: 117114195--117114224 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
117114185 TATTATATAT
*
117114195 AG AG AG AG AG AC AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
117114225 TACCTTTGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:117114913 original size:31 final size:31
Alignment explanation
Indices: 117114840--117114913 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
117114830 AATTTCGAGA
* *
117114840 GTTTAATTAAGATTTTTGAAACTTTTGTAAG
1 GTTTAATTAAAATTTTTAAAACTTTTGTAAG
* *
117114871 GCTTAATTAAAATTTTTAAAATTTTTG-AAG
1 GTTTAATTAAAATTTTTAAAACTTTTGTAAG
*
117114901 GATTTAAATAAAA
1 G-TTTAATTAAAA
117114914 ATTAAAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
30 4 0.11
31 32 0.89
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.45
Consensus pattern (31 bp):
GTTTAATTAAAATTTTTAAAACTTTTGTAAG
Found at i:117119407 original size:16 final size:16
Alignment explanation
Indices: 117119353--117119407 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
117119343 TTAATTTTTG
*
117119353 TTATTTTTT-TAGAAA
1 TTATTTTTTATAGTAA
*
117119368 TTATTTTTATCATACTAA
1 TTATTTTT-T-ATAGTAA
*
117119386 TAATTTTTTATAGTAA
1 TTATTTTTTATAGTAA
117119402 TTATTT
1 TTATTT
117119408 AAAAAAATGA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 8 0.25
16 12 0.38
17 1 0.03
18 11 0.34
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (16 bp):
TTATTTTTTATAGTAA
Found at i:117119970 original size:29 final size:28
Alignment explanation
Indices: 117119923--117120003 Score: 74
Period size: 29 Copynumber: 2.8 Consensus size: 28
117119913 ACATTTGAAC
* *
117119923 CAAAATCAAGTTT-ACTATATAAGATTGCA
1 CAAAATCAAATTTCA-TATATAA-ATTACA
117119952 CAAAATCAAATTTCATATATCAAATTACA
1 CAAAATCAAATTTCATATAT-AAATTACA
* *
117119981 AATTAAATCAAAATTCATATATA
1 CA--AAATCAAATTTCATATATA
117120004 TTTTTTATAC
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
29 23 0.52
30 4 0.09
31 17 0.39
ACGTcount: A:0.51, C:0.14, G:0.04, T:0.32
Consensus pattern (28 bp):
CAAAATCAAATTTCATATATAAATTACA
Found at i:117120366 original size:11 final size:11
Alignment explanation
Indices: 117120350--117120382 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
117120340 TCATAAACCC
117120350 TTTGATTTGAT
1 TTTGATTTGAT
117120361 TTTGATTTGAT
1 TTTGATTTGAT
117120372 TTTGATATTGA
1 TTTGAT-TTGA
117120383 AGTAAATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (11 bp):
TTTGATTTGAT
Found at i:117128931 original size:20 final size:20
Alignment explanation
Indices: 117128908--117128949 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
117128898 TTTTCTACGT
117128908 AATAAAGC-ATAAATGAAAAA
1 AATAAAGCAATAAA-GAAAAA
*
117128928 AATAAATCAATAAAGAAAAA
1 AATAAAGCAATAAAGAAAAA
117128948 AA
1 AA
117128950 CCCTCATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (20 bp):
AATAAAGCAATAAAGAAAAA
Found at i:117133511 original size:33 final size:33
Alignment explanation
Indices: 117133456--117133518 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
117133446 TTTAACCAAA
*
117133456 CTATACAAAATTTTGGATTTAGCTTGTATAACC
1 CTATACAAAATTTTGGATTTAGCTCGTATAACC
117133489 CTATACAAAATTTTGGATTTAGCTCGTATA
1 CTATACAAAATTTTGGATTTAGCTCGTATA
117133519 CCACTAAACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (33 bp):
CTATACAAAATTTTGGATTTAGCTCGTATAACC
Found at i:117140573 original size:20 final size:21
Alignment explanation
Indices: 117140530--117140575 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
117140520 TACTAATTAA
*
117140530 AAATATTTAATAGTTATATTT
1 AAATATTTAATAGATATATTT
117140551 AAATATTTAA-A-ATATAGTTT
1 AAATATTTAATAGATATA-TTT
117140571 AAATA
1 AAATA
117140576 CTCTAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 9 0.39
21 10 0.43
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (21 bp):
AAATATTTAATAGATATATTT
Found at i:117140850 original size:13 final size:13
Alignment explanation
Indices: 117140834--117140868 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
117140824 ATTAAAATTT
117140834 TCAAAAACACTTC
1 TCAAAAACACTTC
*
117140847 TCAAAAACACTTT
1 TCAAAAACACTTC
117140860 TCAAAAACA
1 TCAAAAACA
117140869 TTACCAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (13 bp):
TCAAAAACACTTC
Found at i:117153354 original size:16 final size:16
Alignment explanation
Indices: 117153335--117153376 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
117153325 AAGTAAAAAT
117153335 ATAATTTATTAATTTA
1 ATAATTTATTAATTTA
* *
117153351 ATAATTTA-TATTTTT
1 ATAATTTATTAATTTA
117153366 ATAATTT-TTAA
1 ATAATTTATTAA
117153377 AAAATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATAATTTATTAATTTA
Found at i:117153403 original size:30 final size:29
Alignment explanation
Indices: 117153362--117153435 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
117153352 TAATTTATAT
*
117153362 TTTTATAATTTTTAAAAAATTAAAT-TAAAA
1 TTTTATTATTTTTAAAAAA-T-AATGTAAAA
* * *
117153392 TTTTATTATTTTTGAAGAATAATGTATAA
1 TTTTATTATTTTTAAAAAATAATGTAAAA
*
117153421 TTTTATTATTATTAA
1 TTTTATTATTTTTAA
117153436 TTTATAAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
28 3 0.08
29 18 0.49
30 16 0.43
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (29 bp):
TTTTATTATTTTTAAAAAATAATGTAAAA
Found at i:117153423 original size:29 final size:28
Alignment explanation
Indices: 117153350--117153435 Score: 82
Period size: 30 Copynumber: 2.9 Consensus size: 28
117153340 TTATTAATTT
* *
117153350 AATAATTTATATTTTTATAATTTTTAAAA
1 AATAA-TTATAATTTTATTATTTTTAAAA
* * *
117153379 AATTAAATTAAAATTTTATTATTTTTGAAG
1 AA-T-AATTATAATTTTATTATTTTTAAAA
*
117153409 AATAATGTATAATTTTATTATTATTAA
1 AATAAT-TATAATTTTATTATTTTTAA
117153436 TTTATAAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
28 3 0.07
29 20 0.43
30 21 0.46
31 2 0.04
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (28 bp):
AATAATTATAATTTTATTATTTTTAAAA
Found at i:117154280 original size:28 final size:24
Alignment explanation
Indices: 117154237--117154294 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 24
117154227 TGTATTAATA
*
117154237 AAAATATTGCATTAAAAATTAAAATCT
1 AAAATATTGCAGT--AAATTAAAAT-T
*
117154264 ATAAATATTTCAGTAAATTAAAATT
1 A-AAATATTGCAGTAAATTAAAATT
117154289 AAAATA
1 AAAATA
117154295 ATTATTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 5 0.18
25 2 0.07
26 10 0.36
27 1 0.04
28 10 0.36
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.34
Consensus pattern (24 bp):
AAAATATTGCAGTAAATTAAAATT
Found at i:117154313 original size:20 final size:20
Alignment explanation
Indices: 117154288--117154333 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
117154278 AAATTAAAAT
*
117154288 TAAAATAATTATTTTTAAT-A
1 TAAAATAATTA-ATTTAATAA
117154308 TAAAAT-ATTAATTTAATAA
1 TAAAATAATTAATTTAATAA
117154327 TAAAATA
1 TAAAATA
117154334 CATAAAATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 6 0.26
19 11 0.48
20 6 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAAATAATTAATTTAATAA
Found at i:117154428 original size:17 final size:16
Alignment explanation
Indices: 117154404--117154441 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
117154394 TAGGAAAATA
117154404 TAAAATTA-ATTTATGT
1 TAAAATTATATTTAT-T
117154420 TAAATATTATATTTATT
1 TAAA-ATTATATTTATT
117154437 TAAAA
1 TAAAA
117154442 CTGATAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.25
17 9 0.45
18 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TAAAATTATATTTATT
Found at i:117158219 original size:23 final size:24
Alignment explanation
Indices: 117158173--117158220 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
117158163 TAGTTATTTC
*
117158173 TGATTGTTTGATTTTTACAGAAAT
1 TGATTGTTTGATTTTTACAAAAAT
117158197 TGATTGTTTGA-TTTTACAAAAAT
1 TGATTGTTTGATTTTTACAAAAAT
117158220 T
1 T
117158221 TTATAGAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.31, C:0.04, G:0.15, T:0.50
Consensus pattern (24 bp):
TGATTGTTTGATTTTTACAAAAAT
Found at i:117163626 original size:17 final size:16
Alignment explanation
Indices: 117163582--117163649 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
117163572 TTTGGTTCGC
117163582 TGTATTGGATTAGA-G
1 TGTATTGGATTAGAGG
*
117163597 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
117163613 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
117163630 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
117163646 TGTA
1 TGTA
117163650 ATAGCTAATC
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
15 13 0.27
16 21 0.43
17 15 0.31
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:117163641 original size:33 final size:31
Alignment explanation
Indices: 117163582--117163649 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 31
117163572 TTTGGTTCGC
117163582 TGTATTGGATTAGAGTGTATTAGATTAGAGG
1 TGTATTGGATTAGAGTGTATTAGATTAGAGG
*
117163613 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGA-GTGTATTAGATTAGAGG
117163646 TGTA
1 TGTA
117163650 ATAGCTAATC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 6 0.18
32 8 0.24
33 20 0.59
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (31 bp):
TGTATTGGATTAGAGTGTATTAGATTAGAGG
Found at i:117163714 original size:44 final size:45
Alignment explanation
Indices: 117163630--117163720 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 45
117163620 GGATTAGAGG
* * * *
117163630 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTAAA
***
117163675 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTAAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTAAA
117163719 TG
1 TG
117163721 GAATAGAGGT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 18 0.46
45 21 0.54
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTAAA
Found at i:117163902 original size:16 final size:16
Alignment explanation
Indices: 117163865--117163919 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
117163855 TTAATCATAT
*
117163865 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
117163881 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
117163896 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
117163914 -TAAAAT
1 TTAAAAT
117163920 TCTTATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:117163912 original size:18 final size:18
Alignment explanation
Indices: 117163871--117163919 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
117163861 ATATTTAAAC
117163871 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
117163889 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
117163905 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
117163920 TCTTATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:117164038 original size:67 final size:67
Alignment explanation
Indices: 117163967--117164179 Score: 163
Period size: 67 Copynumber: 3.1 Consensus size: 67
117163957 ATTGTTAATG
*
117163967 TTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATCTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATCTTAATCATATTTAAACATAAT
117164032 TA
66 TA
* * * * ***
117164034 TTATTAAATATATTTTAATTAAAATATATAATT-T-AAT-A-AAAT-TCTT-ATAATTAGCAGAA
1 TTATT---TAAATTTTAA-TAAGAT-TATTATTATCAATAATAAATATCTTAATCA-TA-TTTAA
** * *
117164093 ATTTGTTATTG
59 A--CATAATTA
*
117164104 TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATTTAAACATAA
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAAT-ATCTTAATCATATTTAAACATAA
117164168 TTA
65 TTA
117164171 TTA-TTAAAT
1 TTATTTAAAT
117164180 ACATTATAAT
Statistics
Matches: 106, Mismatches: 24, Indels: 33
0.65 0.15 0.20
Matches are distributed among these distances:
65 5 0.05
66 15 0.14
67 30 0.28
68 8 0.08
69 8 0.08
70 24 0.23
71 10 0.09
72 6 0.06
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (67 bp):
TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATCTTAATCATATTTAAACATAAT
TA
Found at i:117164056 original size:156 final size:156
Alignment explanation
Indices: 117163772--117164099 Score: 611
Period size: 156 Copynumber: 2.1 Consensus size: 156
117163762 TAGAATACCC
* *
117163772 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
*
117163837 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
117163902 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
117163928 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
*
117163993 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
117164058 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
*
117164084 TTAGCAGAAATTTGTT
1 TTAGCAGAAAATTGTT
117164100 ATTGTTATTT
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 167 1.00
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:117164062 original size:18 final size:17
Alignment explanation
Indices: 117164041--117164075 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
117164031 TTATTATTAA
*
117164041 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
117164059 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
117164076 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:117164066 original size:137 final size:137
Alignment explanation
Indices: 117163958--117164217 Score: 387
Period size: 137 Copynumber: 1.9 Consensus size: 137
117163948 TAAATGATTA
* *
117163958 TTGTTAATGTTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAAT-ATCTTAATCATATT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATT
* * * *
117164022 TAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTATAATTA
65 TAAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAAGAAAATTCTTATAAGTA
*
117164087 GCAGAAAT
130 GAAGAAAT
*
117164095 TTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
**** *
117164160 AAACATAATTATTATTAAATACATTATAATTTTGGTATATAATTTAATAAAATTCTTA
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAAGAAAATTCTTA
117164218 ATAATTCATA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
137 111 0.98
138 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (137 bp):
TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAAGAAAATTCTTATAAGTAG
AAGAAAT
Found at i:117164257 original size:137 final size:135
Alignment explanation
Indices: 117163979--117164257 Score: 332
Period size: 137 Copynumber: 2.0 Consensus size: 135
117163969 ATTTAAATTT
* *
117163979 TAATAAGATTATTATTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
* * * *
117164044 TATTTTAATTAAAATATATAATTTAATAAAATTCTTATAATTAGCAGAAATTTGTTATTGTTATT
66 CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTA-CA-AAATTTCTTATTGTTACT
* **
117164109 TAAATTT
129 CAAATCA
117164116 TAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATTTAAACATAATTATTATTAAAT
1 TAATAAGATTATTAATATCAATAATAAAT-ATCTTAATCATATTTAAACATAATTATTATTAAAT
**** *
117164180 ACATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT-C-ATA-TTCTTATATGAATT
65 ACATTATAATTAAAATATATAATTTAATAAAATTCTT-ATAATTACAAAATTTCTTAT-TG---T
117164242 TACTCAAATCA
125 TACTCAAATCA
117164253 TAATA
1 TAATA
117164258 TAATGAAGAT
Statistics
Matches: 122, Mismatches: 14, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
133 6 0.05
134 4 0.03
136 1 0.01
137 103 0.84
138 8 0.07
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.45
Consensus pattern (135 bp):
TAATAAGATTATTAATATCAATAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTACAAAATTTCTTATTGTTACTCA
AATCA
Found at i:117168963 original size:11 final size:12
Alignment explanation
Indices: 117168944--117168971 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
117168934 TTGTTGCTTT
117168944 AATTTTTTTTAA
1 AATTTTTTTTAA
117168956 AATTTTTTTTAA
1 AATTTTTTTTAA
117168968 AATT
1 AATT
117168972 GATGTGTACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
AATTTTTTTTAA
Found at i:117178427 original size:154 final size:154
Alignment explanation
Indices: 117178206--117178517 Score: 606
Period size: 154 Copynumber: 2.0 Consensus size: 154
117178196 TTAGGTAATA
117178206 AAAAATGTCTAGCACATGGAAGGATACAGACCATCTAAAATCTAAATAAACGAGAAATATGTGAT
1 AAAAATGTCTAGCACATGGAAGGATACAGACCATCTAAAATCTAAATAAACGAGAAATATGTGAT
**
117178271 CGATAAGAAAATTAGATCTAAATCATCACTATAAACAGTCAAGTCTGTATGATAAACAAGTGGAA
66 CGATAAGAAAATTAGATCTAAATCATCACTATAAACAGTCAAGTCCATATGATAAACAAGTGGAA
117178336 ACATTCCTAAGAACATGCACAGAT
131 ACATTCCTAAGAACATGCACAGAT
117178360 AAAAATGTCTAGCACATGGAAGGATACAGACCATCTAAAATCTAAATAAACGAGAAATATGTGAT
1 AAAAATGTCTAGCACATGGAAGGATACAGACCATCTAAAATCTAAATAAACGAGAAATATGTGAT
117178425 CGATAAGAAAATTAGATCTAAATCATCACTATAAACAGTCAAGTCCATATGATAAACAAGTGGAA
66 CGATAAGAAAATTAGATCTAAATCATCACTATAAACAGTCAAGTCCATATGATAAACAAGTGGAA
117178490 ACATTCCTAAGAACATGCACAGAT
131 ACATTCCTAAGAACATGCACAGAT
117178514 AAAA
1 AAAA
117178518 TTAGAAAGTC
Statistics
Matches: 156, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
154 156 1.00
ACGTcount: A:0.47, C:0.16, G:0.15, T:0.22
Consensus pattern (154 bp):
AAAAATGTCTAGCACATGGAAGGATACAGACCATCTAAAATCTAAATAAACGAGAAATATGTGAT
CGATAAGAAAATTAGATCTAAATCATCACTATAAACAGTCAAGTCCATATGATAAACAAGTGGAA
ACATTCCTAAGAACATGCACAGAT
Found at i:117182166 original size:19 final size:17
Alignment explanation
Indices: 117182124--117182184 Score: 61
Period size: 19 Copynumber: 3.4 Consensus size: 17
117182114 CTGATTCTAC
117182124 ATAAAAAAA-TTAAAAA
1 ATAAAAAAATTTAAAAA
*
117182140 ACTCAAAAATATTTAAAAA
1 A-T-AAAAAAATTTAAAAA
117182159 TATAAAAAAATTCTAGAAAA
1 -ATAAAAAAATT-TA-AAAA
117182179 ATAAAA
1 ATAAAA
117182185 TCTTAAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
16 1 0.03
17 1 0.03
18 14 0.38
19 16 0.43
20 5 0.14
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (17 bp):
ATAAAAAAATTTAAAAA
Found at i:117183202 original size:31 final size:31
Alignment explanation
Indices: 117183159--117183229 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
117183149 AAGAGTTACA
117183159 ATTTAA-TTATTAAAATTTTTAAAAGTTT-TC
1 ATTTAAGTTATTAAAATTTTTAAAA-TTTATC
*
117183189 ATTTAAGTTATTAAAATTTTTAAAATTTATT
1 ATTTAAGTTATTAAAATTTTTAAAATTTATC
117183220 ATTTAAGTTA
1 ATTTAAGTTA
117183230 CTAAGTTGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
30 9 0.24
31 29 0.76
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (31 bp):
ATTTAAGTTATTAAAATTTTTAAAATTTATC
Found at i:117191389 original size:269 final size:269
Alignment explanation
Indices: 117190910--117191448 Score: 997
Period size: 269 Copynumber: 2.0 Consensus size: 269
117190900 TTAAAGTTTT
* *
117190910 ATATATACATCTAAACTGAAAATTGAGTTTAATGTGTATGATTACACAAAAATCAAACTTCATTT
1 ATATATACATCTAAACCGAAAATTGAGTTTAATGTATATGATTACACAAAAATCAAACTTCATTT
117190975 ATTAAATTGTATCAAATTACATATTAAATCAAAATTGATGTATAAATTTAATATTTACCCCTAAA
66 ATTAAATTGTATCAAATTACATATTAAATCAAAATTGATGTATAAATTTAATATTTACCCCTAAA
117191040 AAAATAGTCTACCTCGATTTTAAAAATATTAGCTTTAAATATACTTTACGTCTTATTCAGCTGAT
131 AAAATAGTCTACCTCGATTTTAAAAATATTAGCTTTAAATATACTTTACGTCTTATTCAGCTGAT
117191105 ATTTAACATCCATTTGGACGAGAGAAGAACTTGATTAATACAATAATGATACTTTAAGAGTCCGG
196 ATTTAACATCCATTTGGACGAGAGAAGAACTTGATTAATACAATAATGATACTTTAAGAGTCCGG
117191170 GGACATATA
261 GGACATATA
*
117191179 ATATATACATCTAAACCGAAAATTGAGTTTAATGTATATGATTACACAAAGATCAAACTTCATTT
1 ATATATACATCTAAACCGAAAATTGAGTTTAATGTATATGATTACACAAAAATCAAACTTCATTT
* * *
117191244 ATTAAATTGTATCAAATTATATATTAAATCAAAGTTGATGTATAAATTTAATATTTATCCCTAAA
66 ATTAAATTGTATCAAATTACATATTAAATCAAAATTGATGTATAAATTTAATATTTACCCCTAAA
117191309 AAAATAGTCTACCTCGATTTTAAAAATATTAGCTTTAAATATACTTTACGTCTTATTCAGCTGAT
131 AAAATAGTCTACCTCGATTTTAAAAATATTAGCTTTAAATATACTTTACGTCTTATTCAGCTGAT
* * *
117191374 GTTTAACATCCATTTGGACGAGAGAATAACTTGATTAATACGATAATGATACTTTAAGAGTCCGG
196 ATTTAACATCCATTTGGACGAGAGAAGAACTTGATTAATACAATAATGATACTTTAAGAGTCCGG
117191439 GGACATATA
261 GGACATATA
117191448 A
1 A
117191449 CGCAATTAAC
Statistics
Matches: 261, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
269 261 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (269 bp):
ATATATACATCTAAACCGAAAATTGAGTTTAATGTATATGATTACACAAAAATCAAACTTCATTT
ATTAAATTGTATCAAATTACATATTAAATCAAAATTGATGTATAAATTTAATATTTACCCCTAAA
AAAATAGTCTACCTCGATTTTAAAAATATTAGCTTTAAATATACTTTACGTCTTATTCAGCTGAT
ATTTAACATCCATTTGGACGAGAGAAGAACTTGATTAATACAATAATGATACTTTAAGAGTCCGG
GGACATATA
Found at i:117193247 original size:20 final size:20
Alignment explanation
Indices: 117193207--117193244 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
117193197 AATTGTAATT
117193207 TTTAAATAAAACTCTTTAAA
1 TTTAAATAAAACTCTTTAAA
117193227 TTTAAA-AAAACT-TTTAAA
1 TTTAAATAAAACTCTTTAAA
117193245 AATACAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 6 0.33
20 6 0.33
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (20 bp):
TTTAAATAAAACTCTTTAAA
Found at i:117195100 original size:39 final size:39
Alignment explanation
Indices: 117195046--117195210 Score: 258
Period size: 39 Copynumber: 4.2 Consensus size: 39
117195036 TTCAGTGATG
*
117195046 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
117195085 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
117195124 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
117195163 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTTGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
117195202 TATGTCCGG
1 TATATCCGG
117195211 GCTAAAGTCC
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 118 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:117195224 original size:39 final size:39
Alignment explanation
Indices: 117195046--117195237 Score: 179
Period size: 39 Copynumber: 4.9 Consensus size: 39
117195036 TTCAGTGATG
** * * *
117195046 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
** * * *
117195085 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
** * * *
117195124 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
* *
117195163 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTTGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
* * * *
117195202 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGG
1 TATATCCGGACTTAAAGT-CCGCAGGCTACGTGCTGG
117195238 TATTATACCG
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
38 5 0.04
39 134 0.96
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
Found at i:117195237 original size:78 final size:78
Alignment explanation
Indices: 117195046--117195248 Score: 223
Period size: 78 Copynumber: 2.6 Consensus size: 78
117195036 TTCAGTGATG
** * * * *
117195046 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGTAGGC
1 TATATCCGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATATCCGGACTTAAGGTCCGCAGGC
* *
117195111 TATGTGCTGGAAT
66 TACGTGCTGGAAA
** * *
117195124 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGC
1 TATATCCGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATATCCGGACTTAAGGTCCGCAGGC
*
117195189 TACGTGCTTGAAA
66 TACGTGCTGGAAA
* * *
117195202 TATGTCCGGGC-TAAAGTCCCGCAGGCT-TCGAGCTGGTATTATA-CCGG
1 TATATCCGGACTTAAAGT-CCGCAGGCTAT-GAGCTGGAATTATATCCGG
117195249 GTTTAAATTC
Statistics
Matches: 109, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
77 9 0.08
78 100 0.92
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (78 bp):
TATATCCGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATATCCGGACTTAAGGTCCGCAGGC
TACGTGCTGGAAA
Found at i:117203249 original size:19 final size:18
Alignment explanation
Indices: 117203221--117203257 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
117203211 CATTAACCTT
*
117203221 AACAATGGCTAACAAAAAC
1 AACAAAGGCTAA-AAAAAC
117203240 AACAAAGGCTAAAAAAAC
1 AACAAAGGCTAAAAAAAC
117203258 GAAAATGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.62, C:0.19, G:0.11, T:0.08
Consensus pattern (18 bp):
AACAAAGGCTAAAAAAAC
Found at i:117215216 original size:27 final size:27
Alignment explanation
Indices: 117215178--117215230 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
117215168 TGGAGCAAAT
117215178 ATATCATAATCTCAACATCAATATACC
1 ATATCATAATCTCAACATCAATATACC
117215205 ATATCATAATCTCAACATCAATATAC
1 ATATCATAATCTCAACATCAATATAC
117215231 TAAGCATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (27 bp):
ATATCATAATCTCAACATCAATATACC
Found at i:117215412 original size:259 final size:259
Alignment explanation
Indices: 117214947--117215418 Score: 806
Period size: 259 Copynumber: 1.8 Consensus size: 259
117214937 GGAGCAAATT
* *
117214947 TATCACAATCTCAACATCAATATACTCAGTAACAAAGCAGGACTACATTCAACCAGTGTCCCATA
1 TATCACAATCTCAACATCAATATACTAAGCAACAAAGCAGGACTACATTCAACCAGTGTCCCATA
117215012 TTTAATATTTGCATACAATCTCTGCTCAAGGAAAAGTGAAACTAATTAAATATTAGGAACACAAT
66 TTTAATATTTGCATACAATCTCTGCTCAAGGAAAAGTGAAACTAATTAAATATTAGGAACACAAT
**
117215077 AAAACCATGCAGCGTCCTTGTGTCCTTCTAATCTCACATATAAAAGGAGGGCTCTTTTATTAACC
131 AAAACCATGCAGCGTCCTCATGTCCTTCTAATCTCACATATAAAAGGAGGGCTCTTTTATTAACC
117215142 ATTTATGGAAGTCCTAAGTATAGCAATGGAGCAAATATATCATAATCTCAACATCAATATACCA
196 ATTTATGGAAGTCCTAAGTATAGCAATGGAGCAAATATATCATAATCTCAACATCAATATACCA
* *
117215206 TATCATAATCTCAACATCAATATACTAAGCATCAAAGCAGGACTACATTTCAACCAGTGTCCCAT
1 TATCACAATCTCAACATCAATATACTAAGCAACAAAGCAGGACTACA-TTCAACCAGTGTCCCAT
** *
117215271 ATTTAATATTTGTGTACAATCTCTGCTC-GGAGAAAAGTGAAACTAATTAAATATTAGGAACACA
65 ATTTAATATTTGCATACAATCTCTGCTCAAG-GAAAAGTGAAACTAATTAAATATTAGGAACACA
*
117215335 AT-AAACCATAG-AGCTTCCTCATGTCCTTCTAATCTCACATATAAAAGGAGGGCTCTTTTATTA
129 ATAAAACCAT-GCAGCGTCCTCATGTCCTTCTAATCTCACATATAAAAGGAGGGCTCTTTTATTA
117215398 ACCATTTATGGAAGTCCTAAG
193 ACCATTTATGGAAGTCCTAAG
117215419 AAATTTTACC
Statistics
Matches: 200, Mismatches: 10, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
259 121 0.61
260 79 0.40
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.29
Consensus pattern (259 bp):
TATCACAATCTCAACATCAATATACTAAGCAACAAAGCAGGACTACATTCAACCAGTGTCCCATA
TTTAATATTTGCATACAATCTCTGCTCAAGGAAAAGTGAAACTAATTAAATATTAGGAACACAAT
AAAACCATGCAGCGTCCTCATGTCCTTCTAATCTCACATATAAAAGGAGGGCTCTTTTATTAACC
ATTTATGGAAGTCCTAAGTATAGCAATGGAGCAAATATATCATAATCTCAACATCAATATACCA
Found at i:117220503 original size:16 final size:16
Alignment explanation
Indices: 117220455--117220497 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
117220445 AATTCGGAAT
117220455 ATATATAATTTAGAAA
1 ATATATAATTTAGAAA
*
117220471 ATATATAATTTATAAA
1 ATATATAATTTAGAAA
117220487 ATATATAATTT
1 ATATATAATTT
117220498 TAAAAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
ATATATAATTTAGAAA
Found at i:117220614 original size:15 final size:15
Alignment explanation
Indices: 117220596--117220626 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
117220586 AATAATTTTT
117220596 TATAAAATTCTAAAA
1 TATAAAATTCTAAAA
*
117220611 TATATAATTCTAAAA
1 TATAAAATTCTAAAA
117220626 T
1 T
117220627 TCTAAAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
TATAAAATTCTAAAA
Found at i:117220742 original size:28 final size:28
Alignment explanation
Indices: 117220694--117220764 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 28
117220684 TTTTTTAATT
*
117220694 TTTTAACATTTTTCAATTTAT-A-TATATTA
1 TTTTAA-A-TTTTAAATTTATAATTATA-TA
117220723 TTTTAATATTTTAAATTTATAATTATATA
1 TTTTAA-ATTTTAAATTTATAATTATATA
117220752 TTTTAGAATTTTA
1 TTTTA-AATTTTA
117220765 TAAAAAATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
28 11 0.30
29 21 0.57
30 5 0.14
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (28 bp):
TTTTAAATTTTAAATTTATAATTATATA
Found at i:117220774 original size:22 final size:21
Alignment explanation
Indices: 117220727--117220782 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
117220717 ATATTATTTT
*
117220727 AATATTTTAAATTTATAATTA
1 AATATTTTAAATTTATAATAA
*
117220748 TATATTTTAGAATTTTATAA-AA
1 AATATTTTA-AA-TTTATAATAA
117220770 AATATTTTTAAAT
1 AATA-TTTTAAAT
117220783 ATTTTTAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 9 0.31
22 8 0.28
23 12 0.41
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
AATATTTTAAATTTATAATAA
Found at i:117220784 original size:10 final size:10
Alignment explanation
Indices: 117220769--117220825 Score: 62
Period size: 10 Copynumber: 5.8 Consensus size: 10
117220759 ATTTTATAAA
117220769 AAATATTTTT
1 AAATATTTTT
117220779 AAATATTTTT
1 AAATATTTTT
*
117220789 AAACATTTTT
1 AAATATTTTT
* *
117220799 ATATA-TTAT
1 AAATATTTTT
*
117220808 ATATATTTTT
1 AAATATTTTT
*
117220818 ATATATTT
1 AAATATTT
117220826 AATCAATATA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
9 8 0.20
10 33 0.80
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (10 bp):
AAATATTTTT
Found at i:117228032 original size:5 final size:5
Alignment explanation
Indices: 117228022--117228046 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
117228012 AGAACTTATT
117228022 AATTA AATTA AATTA AATTA AATTA
1 AATTA AATTA AATTA AATTA AATTA
117228047 TAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTA
Found at i:117229596 original size:57 final size:57
Alignment explanation
Indices: 117229533--117229646 Score: 185
Period size: 57 Copynumber: 2.0 Consensus size: 57
117229523 AATTATTCAT
* *
117229533 CCTGAACCAATTTAAAAA-AAATTAAATTTATATTTAATTTCGACCCGATCTAAAATG
1 CCTGAACCAATTTAAAAATAAA-TAAATTTATACTTAATTTCGACCCGATCCAAAATG
*
117229590 CCTGAACCAATTTAAAAATAAATAAATTTATACTTAATTTCGACTCGATCCAAAATG
1 CCTGAACCAATTTAAAAATAAATAAATTTATACTTAATTTCGACCCGATCCAAAATG
117229647 TTATAATATT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
57 50 0.94
58 3 0.06
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (57 bp):
CCTGAACCAATTTAAAAATAAATAAATTTATACTTAATTTCGACCCGATCCAAAATG
Found at i:117230304 original size:45 final size:46
Alignment explanation
Indices: 117230253--117230360 Score: 164
Period size: 45 Copynumber: 2.4 Consensus size: 46
117230243 TTTTTTAAAT
* * **
117230253 TTTAAATAAATAATGATAAAATTGTACTTTATCTAAAAAAAAA-GG
1 TTTAAATCAATAATGATAAAATTATACTTTATCTAAAAAAAAACAA
*
117230298 TTTAAATCAATAATGATAAATTTATACTTTATCTAAAAAAAAACAA
1 TTTAAATCAATAATGATAAAATTATACTTTATCTAAAAAAAAACAA
117230344 TTTAAATCAATAATGAT
1 TTTAAATCAATAATGAT
117230361 TTTTTTTAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 40 0.70
46 17 0.30
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (46 bp):
TTTAAATCAATAATGATAAAATTATACTTTATCTAAAAAAAAACAA
Found at i:117232237 original size:120 final size:120
Alignment explanation
Indices: 117232106--117232344 Score: 469
Period size: 120 Copynumber: 2.0 Consensus size: 120
117232096 TCTAAATAAA
117232106 AATATATTTTAAAATGATTAATTTAAATTCAAATACCTACTTAGTTTGCGAAAAGATATATATAA
1 AATATATTTTAAAATGATTAATTTAAATTCAAATACCTACTTAGTTTGCGAAAAGATATATATAA
117232171 TTCAAATTAATTTTTATGAAAATTTGTTTTTCGTATAATTTGTGTCTTTTTTTTC
66 TTCAAATTAATTTTTATGAAAATTTGTTTTTCGTATAATTTGTGTCTTTTTTTTC
*
117232226 AATATATTTTAAAATGATTAATTTAAATTCAAATACCTACTTAGTTTGCGAACAGATATATATAA
1 AATATATTTTAAAATGATTAATTTAAATTCAAATACCTACTTAGTTTGCGAAAAGATATATATAA
117232291 TTCAAATTAATTTTTATGAAAATTTGTTTTTCGTATAATTTGTGTCTTTTTTTT
66 TTCAAATTAATTTTTATGAAAATTTGTTTTTCGTATAATTTGTGTCTTTTTTTT
117232345 TCAAAAAAGA
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.49
Consensus pattern (120 bp):
AATATATTTTAAAATGATTAATTTAAATTCAAATACCTACTTAGTTTGCGAAAAGATATATATAA
TTCAAATTAATTTTTATGAAAATTTGTTTTTCGTATAATTTGTGTCTTTTTTTTC
Found at i:117232750 original size:23 final size:23
Alignment explanation
Indices: 117232723--117232770 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
117232713 ATTCGCTTTT
117232723 GATTTGTTACATAAAATTTTTGG
1 GATTTGTTACATAAAATTTTTGG
* ** *
117232746 GATTTTTTTGATAAGATTTTTGG
1 GATTTGTTACATAAAATTTTTGG
117232769 GA
1 GA
117232771 ATTTTATGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.02, G:0.21, T:0.50
Consensus pattern (23 bp):
GATTTGTTACATAAAATTTTTGG
Found at i:117237984 original size:76 final size:78
Alignment explanation
Indices: 117237855--117238091 Score: 214
Period size: 76 Copynumber: 3.0 Consensus size: 78
117237845 TTTGTTTATG
* * ** * ***
117237855 TAAAAAATAATAAATTAATTAATGTATA-TTAGATTAAAGAATAAGCTAATATTTTTT-TTGTTA
1 TAAAAAATAATAAATTGATTTATGTA-ACTTAGATTAAAGAATAAATTAGTATTTTTTATTAAAA
117237918 AATTT-TTTATTTT
65 AATTTATTTATTTT
* * * *
117237931 TAAAAAATAGTAAATTGGTTTATGTAACTTAGATCAAAGAGTAAATTAGTATTTTTTATTAAAAA
1 TAAAAAATAATAAATTGATTTATGTAACTTAGATTAAAGAATAAATTAGTATTTTTTATTAAAAA
117237996 ATTTATTTATTTT
66 ATTTATTTATTTT
* * * * * *
117238009 TACTGTTAAAAATAACAAATTGTTTTATATATCCTAGATTAAAGACTAAATTAGTA-TTTTTATT
1 TA-----AAAAATAATAAATTGATTTATGTAACTTAGATTAAAGAATAAATTAGTATTTTTTATT
*
117238073 AAAAAA-TTATTAATTTT
61 AAAAAATTTATTTATTTT
117238090 TA
1 TA
117238092 GGATTAAAAA
Statistics
Matches: 132, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
75 1 0.01
76 46 0.35
77 8 0.06
78 10 0.08
81 12 0.09
82 14 0.11
83 41 0.31
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (78 bp):
TAAAAAATAATAAATTGATTTATGTAACTTAGATTAAAGAATAAATTAGTATTTTTTATTAAAAA
ATTTATTTATTTT
Found at i:117238047 original size:83 final size:81
Alignment explanation
Indices: 117237933--117238091 Score: 219
Period size: 83 Copynumber: 1.9 Consensus size: 81
117237923 TTTATTTTTA
** * * *
117237933 AAAAATAGTAAATTGGTTTATGTAACTTAGATCAAAGAGTAAATTAGTATTTTTTATTAAAAAAT
1 AAAAATAACAAATTGGTTTATATAACCTAGATCAAAGACTAAATTAGTA-TTTTTATTAAAAAA-
*
117237998 TTATTTATTTTTACTGTT
64 TTATTAATTTTTACTGTT
* * *
117238016 AAAAATAACAAATTGTTTTATATATCCTAGATTAAAGACTAAATTAGTATTTTTATTAAAAAATT
1 AAAAATAACAAATTGGTTTATATAACCTAGATCAAAGACTAAATTAGTATTTTTATTAAAAAATT
117238081 ATTAATTTTTA
66 ATTAATTTTTA
117238092 GGATTAAAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
81 12 0.18
82 14 0.21
83 41 0.61
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (81 bp):
AAAAATAACAAATTGGTTTATATAACCTAGATCAAAGACTAAATTAGTATTTTTATTAAAAAATT
ATTAATTTTTACTGTT
Found at i:117241643 original size:21 final size:22
Alignment explanation
Indices: 117241610--117241650 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
117241600 GGAAAGACAA
*
117241610 CTATGTGCCAGTTTAAGTCTTT
1 CTATGTGCAAGTTTAAGTCTTT
*
117241632 CTAT-TGCAAGTTTTAGTCT
1 CTATGTGCAAGTTTAAGTCT
117241651 GTGTTATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (22 bp):
CTATGTGCAAGTTTAAGTCTTT
Found at i:117248096 original size:18 final size:18
Alignment explanation
Indices: 117248062--117248112 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
117248052 AGGGGTGTGC
117248062 AAAATTCGGTTAAAACCGAA
1 AAAATTCGGTT--AACCGAA
*
117248082 AAAATTCGGTTAACCGAT
1 AAAATTCGGTTAACCGAA
**
117248100 CGAATTCGGTTAA
1 AAAATTCGGTTAA
117248113 TCGGTCGGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 17 0.61
20 11 0.39
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (18 bp):
AAAATTCGGTTAACCGAA
Found at i:117248319 original size:13 final size:13
Alignment explanation
Indices: 117248301--117248327 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
117248291 CCTCCAGGCT
117248301 CTAAGCCCAAGAA
1 CTAAGCCCAAGAA
117248314 CTAAGCCCAAGAA
1 CTAAGCCCAAGAA
117248327 C
1 C
117248328 AATTCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.33, G:0.15, T:0.07
Consensus pattern (13 bp):
CTAAGCCCAAGAA
Found at i:117248342 original size:7 final size:7
Alignment explanation
Indices: 117248330--117248388 Score: 73
Period size: 7 Copynumber: 8.3 Consensus size: 7
117248320 CCAAGAACAA
117248330 TTCATGT
1 TTCATGT
117248337 TTCATGT
1 TTCATGT
117248344 TTCATGT
1 TTCATGT
*
117248351 TTCACGAT
1 TTCATG-T
117248359 TTCATGT
1 TTCATGT
**
117248366 TTCATAC
1 TTCATGT
*
117248373 TGCATGT
1 TTCATGT
117248380 TTCATGT
1 TTCATGT
117248387 TT
1 TT
117248389 TCTTCTGTAC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
7 37 0.86
8 6 0.14
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.53
Consensus pattern (7 bp):
TTCATGT
Found at i:117248678 original size:37 final size:37
Alignment explanation
Indices: 117248635--117248740 Score: 158
Period size: 37 Copynumber: 2.9 Consensus size: 37
117248625 TGTGTTAAAG
*
117248635 ACTTATGTAATGTTTTTAATTATTTAGTGATTCAAAA
1 ACTTATGTAATGTTTTTAATTATATAGTGATTCAAAA
* * * *
117248672 ATTTATGTAATGTTTTTAGTTATGTAGTGATTCAAAG
1 ACTTATGTAATGTTTTTAATTATATAGTGATTCAAAA
*
117248709 ACTTATGTAATTTTTTTAATTATATAGTGATT
1 ACTTATGTAATGTTTTTAATTATATAGTGATT
117248741 TAAATCGGTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.32, C:0.04, G:0.13, T:0.51
Consensus pattern (37 bp):
ACTTATGTAATGTTTTTAATTATATAGTGATTCAAAA
Found at i:117248768 original size:9 final size:9
Alignment explanation
Indices: 117248740--117248806 Score: 107
Period size: 9 Copynumber: 7.4 Consensus size: 9
117248730 ATATAGTGAT
117248740 TTAAATCGG
1 TTAAATCGG
* *
117248749 TTAAGTTGG
1 TTAAATCGG
117248758 TTAAATCGG
1 TTAAATCGG
117248767 TTAAATCGG
1 TTAAATCGG
117248776 TTAAATCGG
1 TTAAATCGG
*
117248785 TTAAATAGG
1 TTAAATCGG
117248794 TTAAATCGG
1 TTAAATCGG
117248803 TTAA
1 TTAA
117248807 TTTTTAACCA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (9 bp):
TTAAATCGG
Found at i:117248983 original size:12 final size:12
Alignment explanation
Indices: 117248966--117248990 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
117248956 AACTAATTCG
117248966 GGTCGGTTAACC
1 GGTCGGTTAACC
117248978 GGTCGGTTAACC
1 GGTCGGTTAACC
117248990 G
1 G
117248991 AATGCACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:117252507 original size:31 final size:33
Alignment explanation
Indices: 117252472--117252538 Score: 93
Period size: 34 Copynumber: 2.1 Consensus size: 33
117252462 CAAGTTGAAA
*
117252472 AAACTCAGGTACCA-AAA-TGAATATTGAAGTC
1 AAACTCAGGTACCACAAATTGAATATTGAAATC
*
117252503 AAACTCATGTACCACCAAATTGAATATTGAAATC
1 AAACTCAGGTACCA-CAAATTGAATATTGAAATC
117252537 AA
1 AA
117252539 GTTCAAGTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 13 0.42
33 3 0.10
34 15 0.48
ACGTcount: A:0.46, C:0.18, G:0.12, T:0.24
Consensus pattern (33 bp):
AAACTCAGGTACCACAAATTGAATATTGAAATC
Found at i:117252549 original size:34 final size:34
Alignment explanation
Indices: 117252482--117252549 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
117252472 AAACTCAGGT
* *
117252482 ACCAAAATGAATATTGAAGTCAAACTCATGTACC
1 ACCAAAATGAATATTGAAATCAAACTCAAGTACC
* **
117252516 ACCAAATTGAATATTGAAATCAAGTTCAAGTACC
1 ACCAAAATGAATATTGAAATCAAACTCAAGTACC
117252550 GAATAGTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (34 bp):
ACCAAAATGAATATTGAAATCAAACTCAAGTACC
Found at i:117255912 original size:31 final size:32
Alignment explanation
Indices: 117255859--117255920 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
117255849 AATAGTTATT
*
117255859 AAACTATTTGAAAGTTTTTTATTTAAGTCACA
1 AAACTATTCGAAAGTTTTTTATTTAAGTCACA
*
117255891 AAACTATTCGAGAG-TTTTTATTTAAGTCAC
1 AAACTATTCGAAAGTTTTTTATTTAAGTCAC
117255921 TGAGCTGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.42
Consensus pattern (32 bp):
AAACTATTCGAAAGTTTTTTATTTAAGTCACA
Found at i:117258867 original size:21 final size:20
Alignment explanation
Indices: 117258829--117258868 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
117258819 GAAAATACAA
* *
117258829 AATTTAAAAAAAATATAAAG
1 AATTCAAAAAAAAGATAAAG
117258849 AATTCAAAAAATAAGATAAA
1 AATTCAAAAAA-AAGATAAA
117258869 ATAATTTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.23
Consensus pattern (20 bp):
AATTCAAAAAAAAGATAAAG
Found at i:117260122 original size:12 final size:12
Alignment explanation
Indices: 117260107--117260133 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
117260097 AATCAGATTT
117260107 AAAATTAAAATA
1 AAAATTAAAATA
117260119 AAAATTAAAATA
1 AAAATTAAAATA
117260131 AAA
1 AAA
117260134 TGTAAAGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (12 bp):
AAAATTAAAATA
Found at i:117260139 original size:12 final size:11
Alignment explanation
Indices: 117260106--117260139 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
117260096 AAATCAGATT
117260106 TAAAATTAAAA
1 TAAAATTAAAA
117260117 TAAAAATTAAAA
1 T-AAAATTAAAA
117260129 TAAAATGTAAA
1 TAAAAT-TAAA
117260140 GTATTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (11 bp):
TAAAATTAAAA
Found at i:117260416 original size:10 final size:9
Alignment explanation
Indices: 117260401--117260461 Score: 54
Period size: 9 Copynumber: 6.6 Consensus size: 9
117260391 AAATAACTTG
117260401 AATATTATAA
1 AATATTA-AA
117260411 AATATTAAA
1 AATATTAAA
117260420 AA-ATATAAA
1 AATAT-TAAA
117260429 AATA-TAAA
1 AATATTAAA
*
117260437 AGTTCATTAAA
1 A-AT-ATTAAA
*
117260448 AATTTTAAA
1 AATATTAAA
117260457 AATAT
1 AATAT
117260462 ATATACGTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
8 7 0.17
9 20 0.48
10 10 0.24
11 5 0.12
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (9 bp):
AATATTAAA
Found at i:117262316 original size:175 final size:177
Alignment explanation
Indices: 117261996--117262324 Score: 450
Period size: 175 Copynumber: 1.9 Consensus size: 177
117261986 TTTAATCTCA
* * *
117261996 TTTTTGCATTAAGATCTTGTTTAGCAATGAACATTTGATTTATATGGTTGGTTTTATGTATGATG
1 TTTTTGCATTAAAATCTTGTTTAGCAATGAACATTTGA-GTATAT-GATGG-TTTATGTATGATG
* * * * *
117262061 TTTCCTTATCTATATAGCTTTAAAATCAATCAATTTTATCTTATATCTCTTCTTGTATGAATGAA
63 ATTACTTATATATATAGCTTTAAAATCAAGCAATTTTATCTTATATCTCTTCTTATATGAATGAA
*
117262126 CTACTTGCCAGCCCCATGGTGTTGGTATCTTTTAATGTTTTAACTTGGTT
128 CTACTTGCCAGCCCCATGATGTTGGTATCTTTTAATGTTTTAACTTGGTT
*
117262176 TTTTTGCATTAAAAATCTTGTTTAGCAATGATCATTTG-GTATAT-ATGG-TTATGTATGATGAT
1 TTTTTGCATT-AAAATCTTGTTTAGCAATGAACATTTGAGTATATGATGGTTTATGTATGATGAT
* * *
117262238 TACTTGTATATATAGCTTTGAAATCAAGCAATTTTATCTTATAAT-TGTTCTTATATGAATGAAC
65 TACTTATATATATAGCTTTAAAATCAAGCAATTTTATCTTAT-ATCTCTTCTTATATGAATGAAC
* *
117262302 TGCTTGCTAGCCCCATGATGTTG
129 TACTTGCCAGCCCCATGATGTTG
117262325 TAATATAATT
Statistics
Matches: 132, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
175 87 0.66
176 2 0.02
177 3 0.02
179 5 0.04
180 10 0.08
181 25 0.19
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (177 bp):
TTTTTGCATTAAAATCTTGTTTAGCAATGAACATTTGAGTATATGATGGTTTATGTATGATGATT
ACTTATATATATAGCTTTAAAATCAAGCAATTTTATCTTATATCTCTTCTTATATGAATGAACTA
CTTGCCAGCCCCATGATGTTGGTATCTTTTAATGTTTTAACTTGGTT
Found at i:117267860 original size:22 final size:22
Alignment explanation
Indices: 117267835--117267878 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
117267825 TTTAAAAACG
*
117267835 TTGGAGGGTCTAATTAAAATTT
1 TTGGAAGGTCTAATTAAAATTT
* *
117267857 TTGGAAGGTTTAATTAGAATTT
1 TTGGAAGGTCTAATTAAAATTT
117267879 CTAAAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (22 bp):
TTGGAAGGTCTAATTAAAATTT
Found at i:117269930 original size:16 final size:17
Alignment explanation
Indices: 117269908--117269947 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
117269898 AAATTATTCC
117269908 AAAATTATGTATTT-GT
1 AAAATTATGTATTTCGT
* *
117269924 TAAATTATGTTTTTCGT
1 AAAATTATGTATTTCGT
117269941 AAAATTA
1 AAAATTA
117269948 ATTTTTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.50
Consensus pattern (17 bp):
AAAATTATGTATTTCGT
Found at i:117271030 original size:11 final size:11
Alignment explanation
Indices: 117271014--117271039 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
117271004 TTAAATCGAT
117271014 TTGTATCGTTG
1 TTGTATCGTTG
117271025 TTGTATCGTTG
1 TTGTATCGTTG
117271036 TTGT
1 TTGT
117271040 TGTAAGTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.27, T:0.58
Consensus pattern (11 bp):
TTGTATCGTTG
Found at i:117272036 original size:13 final size:13
Alignment explanation
Indices: 117272018--117272060 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
117272008 TCAAGGTGGG
117272018 TTCTTCTTTTGTT
1 TTCTTCTTTTGTT
*
117272031 TTCTTCTTTGGATT
1 TTCTTCTTTTG-TT
* *
117272045 TTTTTTTTTTGTT
1 TTCTTCTTTTGTT
117272058 TTC
1 TTC
117272061 CTTTCAATAC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.02, C:0.12, G:0.09, T:0.77
Consensus pattern (13 bp):
TTCTTCTTTTGTT
Found at i:117282868 original size:22 final size:26
Alignment explanation
Indices: 117282824--117282869 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 26
117282814 ATTTCCCTAT
117282824 TTTTATAACAATACAAATGAATAAAA
1 TTTTATAACAATACAAATGAATAAAA
117282850 TTTT-TAAC-ATA-AAA-GAATAA
1 TTTTATAACAATACAAATGAATAA
117282870 TTTTCTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 3 0.15
25 4 0.20
26 4 0.20
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (26 bp):
TTTTATAACAATACAAATGAATAAAA
Found at i:117288108 original size:6 final size:6
Alignment explanation
Indices: 117288090--117288146 Score: 78
Period size: 6 Copynumber: 9.5 Consensus size: 6
117288080 ACCATCACCA
* * * *
117288090 TCATCT TCTTTT TCATTT TCATCT TCATCT CCATCT TCATCT TCATCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
117288138 TCATCT TCA
1 TCATCT TCA
117288147 ACATCATCCT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.53
Consensus pattern (6 bp):
TCATCT
Found at i:117288153 original size:18 final size:18
Alignment explanation
Indices: 117288114--117288154 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
117288104 ATTTTCATCT
* *
117288114 TCATCTCCATCTTCATCT
1 TCATCTCCATCTTCAACA
*
117288132 TCATCTTCATCTTCAACA
1 TCATCTCCATCTTCAACA
117288150 TCATC
1 TCATC
117288155 CTCTCCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.22, C:0.37, G:0.00, T:0.41
Consensus pattern (18 bp):
TCATCTCCATCTTCAACA
Found at i:117289366 original size:129 final size:129
Alignment explanation
Indices: 117289228--117289469 Score: 387
Period size: 129 Copynumber: 1.9 Consensus size: 129
117289218 AGCTTCACAT
* * * *
117289228 CTTTTTCCTTCAATTTTGGGTCCCGGCTTCTCACCTACATGAAAACATTGAAATTTCATGACAAA
1 CTTTTTCCTTCAATTTTGGATCACGGCTTCTCACCTACATGAAAACATTGAAATCTCAAGACAAA
*
117289293 AA-ATCACTAATAAATTGACAAAAATTTCAATTTTCACACCAATTAGCAAAAAAAAAAAAAAACA
66 AAGATCACTAATAAATTAACAAAAATTTCAATTTTCACA-CAATTAGCAAAAAAAAAAAAAAACA
* * *
117289357 CTTTTTCCTTCAATTTTGGATCACTGCTTCTCGCCTACATGAAAACATTGAAATCTCAAGATAAA
1 CTTTTTCCTTCAATTTTGGATCACGGCTTCTCACCTACATGAAAACATTGAAATCTCAAGACAAA
*
117289422 AAGATCACTAATAAATTAACAAAAATTTCAATTTTCACACAGTTAGCA
66 AAGATCACTAATAAATTAACAAAAATTTCAATTTTCACACAATTAGCA
117289470 GAACAACAAC
Statistics
Matches: 103, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
129 68 0.66
130 35 0.34
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (129 bp):
CTTTTTCCTTCAATTTTGGATCACGGCTTCTCACCTACATGAAAACATTGAAATCTCAAGACAAA
AAGATCACTAATAAATTAACAAAAATTTCAATTTTCACACAATTAGCAAAAAAAAAAAAAAACA
Found at i:117290800 original size:6 final size:6
Alignment explanation
Indices: 117290789--117290823 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
117290779 GGTATGCCAC
*
117290789 TTTCTT TTTCTT TTTCTT TCTCTT TTTCTT TTTCT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCT
117290824 AATTTCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTCTT
Found at i:117297997 original size:6 final size:6
Alignment explanation
Indices: 117297983--117298011 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
117297973 ATCTGCAACA
117297983 AAAAT- AAAATG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG
117298012 GGAAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:117302951 original size:44 final size:43
Alignment explanation
Indices: 117302872--117302964 Score: 100
Period size: 44 Copynumber: 2.1 Consensus size: 43
117302862 TAGGATTCAT
** *
117302872 TTATTCCATGTTATCATTTTTTATAAAATATTTATTCAACATTA
1 TTATTCCATGTTAGAATTATTTATAAAATATTTATTCAACA-TA
* *
117302916 TTATTCCATGTTAAGAATTATTTATTAAAA-A-TTATTTAATATA
1 TTATTCCATGTT-AGAATTATTTA-TAAAATATTTATTCAACATA
117302959 TTATTC
1 TTATTC
117302965 ATAAAAGAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
43 8 0.19
44 20 0.48
45 9 0.21
46 5 0.12
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.52
Consensus pattern (43 bp):
TTATTCCATGTTAGAATTATTTATAAAATATTTATTCAACATA
Found at i:117304294 original size:15 final size:16
Alignment explanation
Indices: 117304269--117304304 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
117304259 AAGTGAAGAA
117304269 TATTATTAAAAATTAT
1 TATTATTAAAAATTAT
*
117304285 TATT-TTAAAATTTAT
1 TATTATTAAAAATTAT
117304300 TATTA
1 TATTA
117304305 AAATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTATTAAAAATTAT
Found at i:117304308 original size:13 final size:13
Alignment explanation
Indices: 117304269--117304308 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
117304259 AAGTGAAGAA
*
117304269 TATTATTAAAAAT
1 TATTATTAAAATT
117304282 TATTATTTTAAAATT
1 TATTA--TTAAAATT
117304297 TATTATTAAAAT
1 TATTATTAAAAT
117304309 AAAATTGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 12 0.50
15 12 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TATTATTAAAATT
Found at i:117307091 original size:71 final size:71
Alignment explanation
Indices: 117306957--117307100 Score: 198
Period size: 71 Copynumber: 2.0 Consensus size: 71
117306947 GATTATAGAT
* * *
117306957 AATGGTGGAGAAAAGAACGTAAAAGCTAAGGGTTAAAAGAGTGCTGATAGAGCATAAAGTTAGTA
1 AATGGTGGAGAAAAGAACGTAAAAGCTAAGGGCTAAAAGAGTGCTGACAGAGCATAAACTTAGTA
117307022 TTATTG
66 TTATTG
* * * * * *
117307028 AATGGTGGAGAAAAGAATGTAAAGGCTAAGGGCTAAAAGAGTGTTGGCAGAGTATAGACTTAGTA
1 AATGGTGGAGAAAAGAACGTAAAAGCTAAGGGCTAAAAGAGTGCTGACAGAGCATAAACTTAGTA
*
117307093 TTTTTG
66 TTATTG
117307099 AA
1 AA
117307101 GGGTTGATCA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.40, C:0.06, G:0.29, T:0.25
Consensus pattern (71 bp):
AATGGTGGAGAAAAGAACGTAAAAGCTAAGGGCTAAAAGAGTGCTGACAGAGCATAAACTTAGTA
TTATTG
Found at i:117320057 original size:39 final size:39
Alignment explanation
Indices: 117320014--117320089 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
117320004 GGATCCATAA
*
117320014 ACTATTCATAATTGCATGTTTGAAGTTGAAACAATAGGC
1 ACTATTCATAATTGCATGTTTGAAATTGAAACAATAGGC
117320053 ACTATTCATAATTGCATGTTTGAAATTGAAACAATAG
1 ACTATTCATAATTGCATGTTTGAAATTGAAACAATAG
117320090 CCTTTTGCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (39 bp):
ACTATTCATAATTGCATGTTTGAAATTGAAACAATAGGC
Found at i:117324532 original size:3 final size:3
Alignment explanation
Indices: 117324524--117324568 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
117324514 GATCATATTT
*
117324524 ATA ATA ATA ATA ATA ACA ATA ATA AT- ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
117324569 AAGAAGAAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:117326958 original size:11 final size:11
Alignment explanation
Indices: 117326937--117326990 Score: 67
Period size: 11 Copynumber: 5.0 Consensus size: 11
117326927 GATTAGTTCG
117326937 ATTTAATTAAAA
1 ATTT-ATTAAAA
117326949 ATTTATTAAAA
1 ATTTATTAAAA
117326960 ATTTA-TAAAA
1 ATTTATTAAAA
* *
117326970 ATTAAATAAAA
1 ATTTATTAAAA
117326981 A-TTATTAAAA
1 ATTTATTAAAA
117326991 TAAAAATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
10 16 0.42
11 18 0.47
12 4 0.11
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
ATTTATTAAAA
Found at i:117326969 original size:21 final size:20
Alignment explanation
Indices: 117326944--117327003 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
117326934 TCGATTTAAT
* *
117326944 TAAAAATTTATTAAAAATTTA
1 TAAAAATTAAATAAAAA-TTA
117326965 TAAAAATTAAATAAAAATTA
1 TAAAAATTAAATAAAAATTA
* *
117326985 TTAAAATAAAAATAAAAAT
1 TAAAAAT-TAAATAAAAAT
117327004 AAAAATTCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.26
21 25 0.74
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAAATTAAATAAAAATTA
Found at i:117326989 original size:10 final size:10
Alignment explanation
Indices: 117326942--117326990 Score: 55
Period size: 10 Copynumber: 4.7 Consensus size: 10
117326932 GTTCGATTTA
117326942 ATTAAAAATTT
1 ATTAAAAA-TT
117326953 ATTAAAAATT
1 ATTAAAAATT
117326963 -TATAAAAATT
1 AT-TAAAAATT
*
117326973 AAATAAAAATT
1 -ATTAAAAATT
117326984 ATTAAAA
1 ATTAAAA
117326991 TAAAAATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
9 1 0.03
10 16 0.48
11 16 0.48
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAAATT
Found at i:117330116 original size:126 final size:126
Alignment explanation
Indices: 117329887--117330116 Score: 313
Period size: 126 Copynumber: 1.8 Consensus size: 126
117329877 AGTTTTAAGA
* * *
117329887 GGATATTCGAATACTTAAAACGAATAAAGAAAACGAAACACAGTACGTTAAGGCACGATTCTTTG
1 GGATATTCGAATACTTAAAACAAACAAAGAAAACGAAACACAGTACGTTAAGGCACGATTCTCTG
* * *
117329952 AATTCTTTAAATACCAAACATTGCCTTCGTTTTGAAAATTTTTTAGAGTGAACCGATAAAG
66 AATTCTTTAAATACCAAACATTGCATTCATTTTAAAAATTTTTTAGAGTGAACCGATAAAG
* * * *
117330013 GGATATTCTG-ATA-TTCAAAACAAACAAAGAAAGCGAAACCCAGTATGTTAGGGCACGATTCTC
1 GGATATTC-GAATACTT-AAAACAAACAAAGAAAACGAAACACAGTACGTTAAGGCACGATTCTC
*
117330076 TGAATTCTTTAAATACCGAACATTGTCATT-ATTTTAAAAAT
64 TGAATTCTTTAAATACCAAACATTG-CATTCATTTTAAAAAT
117330117 GATTGAAAAT
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
125 2 0.02
126 84 0.93
127 4 0.04
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.30
Consensus pattern (126 bp):
GGATATTCGAATACTTAAAACAAACAAAGAAAACGAAACACAGTACGTTAAGGCACGATTCTCTG
AATTCTTTAAATACCAAACATTGCATTCATTTTAAAAATTTTTTAGAGTGAACCGATAAAG
Found at i:117330309 original size:18 final size:18
Alignment explanation
Indices: 117330283--117330342 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 18
117330273 TAATCAAGAC
*
117330283 CATAGTAAAAAAAGATAA
1 CATAATAAAAAAAGATAA
* *
117330301 CATAAT-AAACAAG--AC
1 CATAATAAAAAAAGATAA
*
117330316 CATAGTAAAAAAAGATAA
1 CATAATAAAAAAAGATAA
117330334 CATAATAAA
1 CATAATAAA
117330343 CATAGCAATA
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
15 6 0.19
16 6 0.19
17 6 0.19
18 14 0.44
ACGTcount: A:0.65, C:0.10, G:0.08, T:0.17
Consensus pattern (18 bp):
CATAATAAAAAAAGATAA
Found at i:117330314 original size:33 final size:33
Alignment explanation
Indices: 117330269--117330344 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
117330259 AGAATTAATA
*
117330269 ATAATAATCAAGACCATAGTAAAAAAAGATAAC
1 ATAATAAACAAGACCATAGTAAAAAAAGATAAC
117330302 ATAATAAACAAGACCATAGTAAAAAAAGATAAC
1 ATAATAAACAAGACCATAGTAAAAAAAGATAAC
117330335 ATAATAAACA
1 ATAATAAACA
117330345 TAGCAATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.63, C:0.12, G:0.08, T:0.17
Consensus pattern (33 bp):
ATAATAAACAAGACCATAGTAAAAAAAGATAAC
Found at i:117332074 original size:14 final size:14
Alignment explanation
Indices: 117332055--117332084 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
117332045 TAAAAATTAT
117332055 AAATAATAATAGTA
1 AAATAATAATAGTA
*
117332069 AAATAATAGTAGTA
1 AAATAATAATAGTA
117332083 AA
1 AA
117332085 CGGTAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (14 bp):
AAATAATAATAGTA
Found at i:117332291 original size:16 final size:16
Alignment explanation
Indices: 117332270--117332319 Score: 63
Period size: 15 Copynumber: 3.4 Consensus size: 16
117332260 TGAAAATGAT
117332270 ATAATAAGTATAATAA
1 ATAATAAGTATAATAA
*
117332286 ATAAT-AGTGTAA-AA
1 ATAATAAGTATAATAA
117332300 A-AATAA-TATAATAA
1 ATAATAAGTATAATAA
117332314 ATAATA
1 ATAATA
117332320 GGAAAGTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
13 7 0.24
14 7 0.24
15 10 0.34
16 5 0.17
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (16 bp):
ATAATAAGTATAATAA
Found at i:117333722 original size:43 final size:43
Alignment explanation
Indices: 117333669--117333757 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
117333659 ACATAGCTAC
*
117333669 TAATATGTATTTCATTTATTTCAAAACATGACACCGATGAATT
1 TAATACGTATTTCATTTATTTCAAAACATGACACCGATGAATT
117333712 TAATACGTATTTCATTTATTTCAAAACATGACACCGATGAATT
1 TAATACGTATTTCATTTATTTCAAAACATGACACCGATGAATT
117333755 TAA
1 TAA
117333758 CTAAAAGGCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (43 bp):
TAATACGTATTTCATTTATTTCAAAACATGACACCGATGAATT
Found at i:117334859 original size:27 final size:29
Alignment explanation
Indices: 117334829--117334883 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 29
117334819 AACTTTAATT
* *
117334829 TTAAACCAAA-TATTTGA-ATATTAAATC
1 TTAAACCAAACAAATTGATATATTAAATC
*
117334856 TTAAATCAAACAAATTGATATATTAAAT
1 TTAAACCAAACAAATTGATATATTAAAT
117334884 TTATATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 9 0.39
28 5 0.22
29 9 0.39
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (29 bp):
TTAAACCAAACAAATTGATATATTAAATC
Found at i:117344918 original size:163 final size:164
Alignment explanation
Indices: 117344643--117344969 Score: 541
Period size: 163 Copynumber: 2.0 Consensus size: 164
117344633 TCAAAATTTG
* * * *
117344643 AACATTAAATCATGCGGTTTTGGATGTAGTATGGTGCAGAGGAAGTAAAACTTGGTTGCTTATTG
1 AACACTAAATCATGCGGTTTTAGATGTAGTATGGTGCAGAGGAAGTAAAAATTGATTGCTTATTG
* *
117344708 TCTTCCAATAAATAACATTTAAAATTTCTATGTTCTTGTTGGTTGAGAATCTTCTGTTTTGATTC
66 TCTGCCAATAAATAACATTTAAAATTTCTATGATCTTGTTGGTTGAGAATCTTCTGTTTTGATTC
*
117344773 TGATTGAGGTCA-GGTCATTTTTATCAATATAGT
131 TGATTGAGGTCATGATCATTTTTATCAATATAGT
*
117344806 AACACTAAATCATGTGGTTTTAGATGTAGTATGGTGCAGAGGAAGTAAAAATTGATTGCTTATTG
1 AACACTAAATCATGCGGTTTTAGATGTAGTATGGTGCAGAGGAAGTAAAAATTGATTGCTTATTG
* *
117344871 TCTGCCTATAAATAACATTT-TAATTTGCTATGATCTTGTTGGTTGAGAATCTTCTGTTTTGATT
66 TCTGCCAATAAATAACATTTAAAATTT-CTATGATCTTGTTGGTTGAGAATCTTCTGTTTTGATT
117344935 CTGATTGAGGTCATGATCATTTTTATCAATATAGT
130 CTGATTGAGGTCATGATCATTTTTATCAATATAGT
117344970 TAAATTCTTT
Statistics
Matches: 152, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
162 5 0.03
163 127 0.84
164 20 0.13
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (164 bp):
AACACTAAATCATGCGGTTTTAGATGTAGTATGGTGCAGAGGAAGTAAAAATTGATTGCTTATTG
TCTGCCAATAAATAACATTTAAAATTTCTATGATCTTGTTGGTTGAGAATCTTCTGTTTTGATTC
TGATTGAGGTCATGATCATTTTTATCAATATAGT
Found at i:117351542 original size:47 final size:46
Alignment explanation
Indices: 117351481--117351592 Score: 152
Period size: 47 Copynumber: 2.4 Consensus size: 46
117351471 TGCAACTGAA
* * *
117351481 TAATATTTTCTGTAATTACACAAATACACATAACATTACCGAAGTTG
1 TAATATTTT-TGTAATTACACAAATACACAAAACATTACAGAAGTCG
* *
117351528 TAATAGTTTTTGTAATTACATAAATATACAAAACATTACAGAAGTCG
1 TAATA-TTTTTGTAATTACACAAATACACAAAACATTACAGAAGTCG
117351575 TAATAATTTTTGTAATTA
1 TAAT-ATTTTTGTAATTA
117351593 GGTAATGTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
47 53 0.91
48 5 0.09
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.38
Consensus pattern (46 bp):
TAATATTTTTGTAATTACACAAATACACAAAACATTACAGAAGTCG
Found at i:117362596 original size:6 final size:6
Alignment explanation
Indices: 117362585--117362668 Score: 60
Period size: 6 Copynumber: 14.0 Consensus size: 6
117362575 CCCAGGGAGC
* ** * * * **
117362585 TGGAAT TGGAAT TGGGAT TCAAAT TGGAAG TGGAAC TGGGAT TCAAAT
1 TGGAAT TGGAAT TGGAAT TGGAAT TGGAAT TGGAAT TGGAAT TGGAAT
* * **
117362633 TGGAAA TGGAAT TGGAAT TGGGAT TCAAAT TGGAAT
1 TGGAAT TGGAAT TGGAAT TGGAAT TGGAAT TGGAAT
117362669 GCGCATCCCC
Statistics
Matches: 55, Mismatches: 23, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
6 55 1.00
ACGTcount: A:0.35, C:0.05, G:0.31, T:0.30
Consensus pattern (6 bp):
TGGAAT
Found at i:117362643 original size:30 final size:30
Alignment explanation
Indices: 117362609--117362667 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
117362599 GGATTCAAAT
117362609 TGGAAGTGGAACTGGGATTCAAATTGGAAA
1 TGGAAGTGGAACTGGGATTCAAATTGGAAA
* *
117362639 TGGAATTGGAATTGGGATTCAAATTGGAA
1 TGGAAGTGGAACTGGGATTCAAATTGGAA
117362668 TGCGCATCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.36, C:0.05, G:0.32, T:0.27
Consensus pattern (30 bp):
TGGAAGTGGAACTGGGATTCAAATTGGAAA
Found at i:117362668 original size:24 final size:24
Alignment explanation
Indices: 117362585--117362647 Score: 99
Period size: 24 Copynumber: 2.6 Consensus size: 24
117362575 CCCAGGGAGC
*
117362585 TGGAATTGGAATTGGGATTCAAAT
1 TGGAAATGGAATTGGGATTCAAAT
* *
117362609 TGGAAGTGGAACTGGGATTCAAAT
1 TGGAAATGGAATTGGGATTCAAAT
117362633 TGGAAATGGAATTGG
1 TGGAAATGGAATTGG
117362648 AATTGGGATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.33, C:0.05, G:0.33, T:0.29
Consensus pattern (24 bp):
TGGAAATGGAATTGGGATTCAAAT
Found at i:117364151 original size:17 final size:18
Alignment explanation
Indices: 117364126--117364163 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
117364116 TTCAACTGAG
117364126 TTTGACTTTAATGTGTAA
1 TTTGACTTTAATGTGTAA
*
117364144 TTTG-CTTTAATGTTTAA
1 TTTGACTTTAATGTGTAA
117364161 TTT
1 TTT
117364164 AATATTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.24, C:0.05, G:0.13, T:0.58
Consensus pattern (18 bp):
TTTGACTTTAATGTGTAA
Found at i:117369691 original size:73 final size:74
Alignment explanation
Indices: 117369552--117369695 Score: 227
Period size: 73 Copynumber: 2.0 Consensus size: 74
117369542 AACCTTAATT
* * * *
117369552 TCTTTTTAGATTATTTTTATTCTCAACTTTCAAATCTTTAATCAAATTATTTAATTTAGATGAAA
1 TCTTTTCAAATTATTTTGATTCTCAACCTTCAAATCTTTAATCAAATTATTTAATTTAGATGAAA
117369617 AAGTTACTA
66 AAGTTACTA
* *
117369626 TCTTTTCAAATTATTTTGATTTTCAACCTTCAAATC-TTAATCAAATTATTTATTTTAGATGAAA
1 TCTTTTCAAATTATTTTGATTCTCAACCTTCAAATCTTTAATCAAATTATTTAATTTAGATGAAA
117369690 AAGTTA
66 AAGTTA
117369696 ATTAAACCAT
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
73 33 0.52
74 31 0.48
ACGTcount: A:0.35, C:0.11, G:0.06, T:0.48
Consensus pattern (74 bp):
TCTTTTCAAATTATTTTGATTCTCAACCTTCAAATCTTTAATCAAATTATTTAATTTAGATGAAA
AAGTTACTA
Found at i:117377042 original size:23 final size:23
Alignment explanation
Indices: 117377014--117377059 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
117377004 GTTCCTTAGC
117377014 CCAAAATGAGACCGCATTAACAG
1 CCAAAATGAGACCGCATTAACAG
117377037 CCAAAATGAGACCGCATTAACAG
1 CCAAAATGAGACCGCATTAACAG
117377060 TAGTAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.26, G:0.17, T:0.13
Consensus pattern (23 bp):
CCAAAATGAGACCGCATTAACAG
Found at i:117378771 original size:16 final size:16
Alignment explanation
Indices: 117378750--117378782 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
117378740 GTCCATCATT
117378750 ATACACTAAAATTGCC
1 ATACACTAAAATTGCC
*
117378766 ATACACTAAAGTTGCC
1 ATACACTAAAATTGCC
117378782 A
1 A
117378783 AACATATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.24
Consensus pattern (16 bp):
ATACACTAAAATTGCC
Done.